Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88713.t1 | XP_003615537.2 | 74.5 | 876 | 209 | 5 | 1 | 870 | 1 | 868 | 0.00E+00 | 1194.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88713.t1 | Q8VZS6 | 60.3 | 68 | 26 | 1 | 5 | 71 | 9 | 76 | 1.1e-15 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88713.t1 | G7KE04 | 74.5 | 876 | 209 | 5 | 1 | 870 | 1 | 868 | 0.0e+00 | 1194.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050953 | MS.gene88713 | -0.813891 | 2.03E-51 | -1.69E-46 |
| MS.gene052965 | MS.gene88713 | 0.82257 | 2.21E-53 | -1.69E-46 |
| MS.gene054405 | MS.gene88713 | -0.814124 | 1.81E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene88713 | -0.843114 | 1.71E-58 | -1.69E-46 |
| MS.gene057194 | MS.gene88713 | -0.81847 | 1.93E-52 | -1.69E-46 |
| MS.gene05761 | MS.gene88713 | -0.803492 | 3.40E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88713.t1 | MTR_5g069290 | 83.105 | 876 | 134 | 5 | 1 | 870 | 1 | 868 | 0.0 | 1400 |
| MS.gene88713.t1 | MTR_5g096290 | 48.347 | 242 | 106 | 6 | 635 | 870 | 545 | 773 | 5.54e-50 | 189 |
| MS.gene88713.t1 | MTR_5g096290 | 35.503 | 169 | 98 | 4 | 397 | 562 | 371 | 531 | 5.81e-13 | 73.2 |
| MS.gene88713.t1 | MTR_8g019650 | 26.743 | 703 | 367 | 34 | 225 | 870 | 395 | 1006 | 3.05e-33 | 139 |
| MS.gene88713.t1 | MTR_8g019650 | 56.250 | 96 | 40 | 2 | 14 | 108 | 22 | 116 | 6.12e-22 | 102 |
| MS.gene88713.t1 | MTR_8g088190 | 52.055 | 73 | 32 | 1 | 10 | 82 | 18 | 87 | 6.36e-17 | 86.3 |
| MS.gene88713.t1 | MTR_3g048270 | 40.449 | 89 | 47 | 3 | 10 | 98 | 23 | 105 | 3.97e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88713.t1 | AT3G07660 | 45.876 | 885 | 420 | 22 | 1 | 870 | 1 | 841 | 0.0 | 619 |
| MS.gene88713.t1 | AT3G13990 | 28.770 | 504 | 290 | 20 | 10 | 474 | 15 | 488 | 8.36e-27 | 118 |
| MS.gene88713.t1 | AT3G13990 | 28.911 | 505 | 288 | 21 | 10 | 474 | 15 | 488 | 8.42e-27 | 118 |
| MS.gene88713.t1 | AT3G13222 | 49.153 | 118 | 46 | 4 | 5 | 121 | 9 | 113 | 1.95e-23 | 106 |
| MS.gene88713.t1 | AT1G55820 | 46.218 | 119 | 50 | 5 | 3 | 120 | 6 | 111 | 1.02e-19 | 94.4 |
| MS.gene88713.t1 | AT4G18150 | 46.591 | 88 | 42 | 3 | 10 | 97 | 15 | 97 | 2.29e-15 | 81.3 |
| MS.gene88713.t1 | AT5G46380 | 32.468 | 154 | 89 | 6 | 9 | 149 | 10 | 161 | 1.88e-11 | 68.2 |
| MS.gene88713.t1 | AT5G46380 | 32.468 | 154 | 89 | 6 | 9 | 149 | 65 | 216 | 1.96e-11 | 68.2 |
| MS.gene88713.t1 | AT1G29350 | 46.067 | 89 | 46 | 2 | 10 | 98 | 17 | 103 | 4.16e-11 | 67.4 |
Find 251 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGATCTCTTTGATATTC+TGG | 0.088348 | 5.4:-54141224 | None:intergenic |
| GATGAGTGGTAGTGGGTTTA+AGG | 0.186674 | 5.4:+54141170 | None:intergenic |
| TAAATTCACAGGTACTTTAT+TGG | 0.208556 | 5.4:-54147069 | None:intergenic |
| GGAAGTTTGGGAGTCAATTT+TGG | 0.226603 | 5.4:+54145941 | MS.gene88713:CDS |
| GCAACAGTTGCTTCTGAAAC+TGG | 0.237265 | 5.4:+54145005 | MS.gene88713:CDS |
| GGAAGACAGGGGCAGGTTGC+TGG | 0.253745 | 5.4:-54149042 | None:intergenic |
| TGTGGGACCATTGGCAATAA+TGG | 0.263583 | 5.4:-54144841 | None:intergenic |
| TGCAACCTCATTTGATTTAT+CGG | 0.269819 | 5.4:-54144985 | None:intergenic |
| CACTCAGAAGCTTCTTCTTC+AGG | 0.272953 | 5.4:+54141311 | MS.gene88713:CDS |
| AATACATGTGGTCAAAATTC+TGG | 0.285084 | 5.4:+54145716 | MS.gene88713:CDS |
| AAATTCACAGGTACTTTATT+GGG | 0.291071 | 5.4:-54147068 | None:intergenic |
| AGTCCTTCTCTTTCGTCTGC+TGG | 0.293341 | 5.4:+54144894 | MS.gene88713:CDS |
| CGGGTCATCTAGTGCTATTC+AGG | 0.293663 | 5.4:+54147109 | MS.gene88713:CDS |
| ATTCCTGGGGCTGACACATT+TGG | 0.295584 | 5.4:-54149223 | None:intergenic |
| ACCGGCAGTTAATTTGTTCT+TGG | 0.306812 | 5.4:-54145183 | None:intergenic |
| CTCAGACACTTGATATTTCT+CGG | 0.309032 | 5.4:+54147273 | MS.gene88713:CDS |
| CATGTAATGCCAAATGCTTT+TGG | 0.314911 | 5.4:+54149301 | MS.gene88713:CDS |
| TCTTGAGGAGATTGAGCATT+TGG | 0.318940 | 5.4:-54147552 | None:intergenic |
| GGAAGAAATACTGCTGTTAC+AGG | 0.321232 | 5.4:+54144337 | MS.gene88713:CDS |
| CGCAACATTGCCATTGTACT+TGG | 0.328043 | 5.4:-54147517 | None:intergenic |
| GAGATAACGGTTCAATCTTC+TGG | 0.330603 | 5.4:+54144924 | MS.gene88713:CDS |
| ACAAAACCATAGCTGTAATT+TGG | 0.334471 | 5.4:-54147203 | None:intergenic |
| TTCCGTGGGCAGCCTGAGTC+GGG | 0.336024 | 5.4:-54150074 | None:intergenic |
| CCTCCAAACTACATTCCTTA+TGG | 0.336677 | 5.4:+54149094 | MS.gene88713:CDS |
| GGAGCTGAGAACCCAACATT+GGG | 0.344599 | 5.4:-54147229 | None:intergenic |
| CTCAGCATGCACAGATGAAT+TGG | 0.346650 | 5.4:+54150208 | MS.gene88713:CDS |
| CAGCACCTGGTCGGTAAAGC+TGG | 0.351254 | 5.4:-54147449 | None:intergenic |
| AATTTGTTCTTCTCAGAATC+AGG | 0.352162 | 5.4:-54145911 | None:intergenic |
| TCAGGTACTATGATATGATT+TGG | 0.352194 | 5.4:-54145893 | None:intergenic |
| GCAGCTGTCACTGCTTGTGC+GGG | 0.362104 | 5.4:-54150117 | None:intergenic |
| CCACATGTATTTGTTGGCTT+TGG | 0.363258 | 5.4:-54145704 | None:intergenic |
| GGAAGAGGATATTTGATTCC+TGG | 0.365318 | 5.4:-54149238 | None:intergenic |
| GGTCCCACAAATGTGGCTTC+TGG | 0.366040 | 5.4:+54144855 | MS.gene88713:CDS |
| TGGTTCCATCGGATAATTCA+TGG | 0.369194 | 5.4:+54145075 | MS.gene88713:CDS |
| CATGATTCTTCGCCACTCCC+TGG | 0.369843 | 5.4:-54145350 | None:intergenic |
| GGGGCAGGTTGCTGGGTAAC+AGG | 0.370121 | 5.4:-54149034 | None:intergenic |
| GCTGGAGGTGGGACATAAAA+TGG | 0.372492 | 5.4:-54149130 | None:intergenic |
| ATCAACATCAACCCTCTCTT+GGG | 0.382542 | 5.4:+54145138 | MS.gene88713:CDS |
| GTGGGACCATTGGCAATAAT+GGG | 0.385629 | 5.4:-54144840 | None:intergenic |
| CTCATGAGAGTTCGAATTCC+CGG | 0.392360 | 5.4:-54149374 | None:intergenic |
| GGAATGTAGTTTGGAGGGTA+AGG | 0.397457 | 5.4:-54149088 | None:intergenic |
| GCAGGGCTCACAATAAAGTT+TGG | 0.397497 | 5.4:-54147299 | None:intergenic |
| TTGGGTGATTGTGGATGGTC+AGG | 0.398594 | 5.4:-54147050 | None:intergenic |
| AGCTTCTGAGTGGTTTCATT+GGG | 0.399045 | 5.4:-54141300 | None:intergenic |
| ATTTCCGATTTCGCGTCTAA+TGG | 0.401669 | 5.4:-54145117 | None:intergenic |
| AAGCTTCTGAGTGGTTTCAT+TGG | 0.402439 | 5.4:-54141301 | None:intergenic |
| AATACTTAAAGAATGTTCTA+TGG | 0.404978 | 5.4:+54141275 | MS.gene88713:CDS |
| CCACAGATTCTTCAATATCC+TGG | 0.405162 | 5.4:-54146033 | None:intergenic |
| TGACCATAAGGAATGTAGTT+TGG | 0.407257 | 5.4:-54149097 | None:intergenic |
| TTGGCATTACATGGTGAGTC+AGG | 0.407647 | 5.4:-54149291 | None:intergenic |
| CGTATATATCAGCGGACAAC+AGG | 0.410693 | 5.4:+54149429 | MS.gene88713:CDS |
| GGTGCCATTAGACGCGAAAT+CGG | 0.415212 | 5.4:+54145113 | MS.gene88713:CDS |
| TCGGATAATTCATGGTTTCC+TGG | 0.418254 | 5.4:+54145083 | MS.gene88713:CDS |
| AGACCGGTTATTGTAATTAG+AGG | 0.419401 | 5.4:-54145436 | None:intergenic |
| CTCCTCCTCTGATCCAGTAC+TGG | 0.419937 | 5.4:+54145055 | MS.gene88713:CDS |
| GTCCTTCTCTTTCGTCTGCT+GGG | 0.424713 | 5.4:+54144895 | MS.gene88713:CDS |
| CCTGGGGCTGACACATTTGG+AGG | 0.425575 | 5.4:-54149220 | None:intergenic |
| TTCAACAGCTGGTTCTACTA+AGG | 0.427096 | 5.4:+54145673 | MS.gene88713:intron |
| ATATAGTAGTCACCTTGTTC+CGG | 0.429202 | 5.4:-54144446 | None:intergenic |
| TTCAAAACTGCAAAGGAAGC+TGG | 0.429461 | 5.4:+54145832 | MS.gene88713:CDS |
| CTCCACTTGGCCGGAAGACA+GGG | 0.429804 | 5.4:-54149054 | None:intergenic |
| TCTCTTTCGTCTGCTGGGAA+TGG | 0.431522 | 5.4:+54144900 | MS.gene88713:CDS |
| ATTCTACAACCTTCCACCTC+AGG | 0.432658 | 5.4:+54150032 | MS.gene88713:CDS |
| CATAATTCTGCAGCGACTAC+CGG | 0.433684 | 5.4:+54149355 | MS.gene88713:CDS |
| AATCAACATCAACCCTCTCT+TGG | 0.437546 | 5.4:+54145137 | MS.gene88713:CDS |
| CCAGGTTTGTATTGTGGAAG+AGG | 0.437588 | 5.4:-54149253 | None:intergenic |
| TTTGGAGAAATTTGCACGCC+TGG | 0.442549 | 5.4:-54147185 | None:intergenic |
| CCATATAGTCCAAAAGCATT+TGG | 0.443159 | 5.4:-54149310 | None:intergenic |
| ACTCCACTTGGCCGGAAGAC+AGG | 0.445426 | 5.4:-54149055 | None:intergenic |
| TGCATTTCCTCAACAACCTC+AGG | 0.448502 | 5.4:+54149177 | MS.gene88713:CDS |
| AGCAACCTGCCCCTGTCTTC+CGG | 0.452385 | 5.4:+54149044 | MS.gene88713:CDS |
| TTATCCGATGGAACCAGTAC+TGG | 0.452921 | 5.4:-54145068 | None:intergenic |
| GAAGACAGGGGCAGGTTGCT+GGG | 0.456269 | 5.4:-54149041 | None:intergenic |
| CCTAGTTACTTCGACTGATA+CGG | 0.457040 | 5.4:-54145765 | None:intergenic |
| ATTTCTCCAAATTACAGCTA+TGG | 0.457763 | 5.4:+54147197 | MS.gene88713:CDS |
| CTTCCTCTAATTACAATAAC+CGG | 0.460825 | 5.4:+54145433 | MS.gene88713:CDS |
| GTTCCGTGGGCAGCCTGAGT+CGG | 0.461637 | 5.4:-54150075 | None:intergenic |
| CCTGCAGCTTGAGTCGCAAC+AGG | 0.462078 | 5.4:-54148992 | None:intergenic |
| ACTCAGAAGCTTCTTCTTCA+GGG | 0.463390 | 5.4:+54141312 | MS.gene88713:CDS |
| CAAAAGCATTTGGCATTACA+TGG | 0.464966 | 5.4:-54149300 | None:intergenic |
| GCGATGTGGGTGGCTGCACC+TGG | 0.465326 | 5.4:+54149979 | MS.gene88713:CDS |
| TCATGGTTTCCTGGTGCTGT+TGG | 0.471403 | 5.4:+54145092 | MS.gene88713:CDS |
| TCTCGGTTCTTCCCAATTCA+AGG | 0.472058 | 5.4:+54149399 | MS.gene88713:CDS |
| GGAGATTGAGCATTTGGAGC+AGG | 0.474746 | 5.4:-54147546 | None:intergenic |
| GAAGAGGATATTTGATTCCT+GGG | 0.475782 | 5.4:-54149237 | None:intergenic |
| CCGTATCAGTCGAAGTAACT+AGG | 0.477477 | 5.4:+54145765 | MS.gene88713:CDS |
| GTTCCAGAAGCCACATTTGT+GGG | 0.477983 | 5.4:-54144858 | None:intergenic |
| AACCGGTCTCAACAATTGAT+TGG | 0.483215 | 5.4:+54145450 | MS.gene88713:CDS |
| AGCCACATTTGTGGGACCAT+TGG | 0.483541 | 5.4:-54144850 | None:intergenic |
| ATGATTCTTCGCCACTCCCT+GGG | 0.483592 | 5.4:-54145349 | None:intergenic |
| AATGCAACAAGCTACGTTAG+TGG | 0.488197 | 5.4:+54145968 | MS.gene88713:CDS |
| TCTGTGCAAGGAAAGATTCA+AGG | 0.488966 | 5.4:+54145321 | MS.gene88713:CDS |
| GCTGACACATTTGGAGGTGG+TGG | 0.491420 | 5.4:-54149214 | None:intergenic |
| ACCTCATTTGATTTATCGGA+AGG | 0.494113 | 5.4:-54144981 | None:intergenic |
| CAACAGTTGCTTCTGAAACT+GGG | 0.494539 | 5.4:+54145006 | MS.gene88713:CDS |
| GCCTGGGTATTGATGACCTT+CGG | 0.496749 | 5.4:-54147168 | None:intergenic |
| GTGGAACCACGCGGGAGACC+TGG | 0.496767 | 5.4:+54143861 | MS.gene88713:CDS |
| CTATATGGCTCCTCTCCAGC+TGG | 0.497010 | 5.4:+54149325 | MS.gene88713:CDS |
| CTTATGGCAGCTTCTGAGAC+TGG | 0.497242 | 5.4:+54145291 | MS.gene88713:intron |
| GAATTGGCCAAGCAATTACT+AGG | 0.497727 | 5.4:+54150224 | MS.gene88713:CDS |
| TCCTGGGATGTTTCAGAAAG+TGG | 0.497962 | 5.4:-54146016 | None:intergenic |
| CAGAATATCAAAGAGATCAC+AGG | 0.502371 | 5.4:+54141225 | MS.gene88713:CDS |
| GAATGTAGTTTGGAGGGTAA+GGG | 0.502558 | 5.4:-54149087 | None:intergenic |
| CACAGATTCTTCAATATCCT+GGG | 0.503160 | 5.4:-54146032 | None:intergenic |
| AACATTGCCATTGTACTTGG+TGG | 0.503298 | 5.4:-54147514 | None:intergenic |
| AGCTGGGCATAGTAACTAGC+TGG | 0.503589 | 5.4:-54147432 | None:intergenic |
| TATGACTTTCGCCCCGACTC+AGG | 0.504267 | 5.4:+54150062 | MS.gene88713:CDS |
| GTGGCTTCTGGAACTATTAG+TGG | 0.504498 | 5.4:+54144867 | MS.gene88713:CDS |
| AGGCAGTTACAGTCTGCGTC+TGG | 0.504814 | 5.4:+54145785 | MS.gene88713:CDS |
| GGGGCTGACACATTTGGAGG+TGG | 0.505162 | 5.4:-54149217 | None:intergenic |
| AAGAAAGAGGGACAAAAGAA+AGG | 0.505867 | 5.4:+54143402 | MS.gene88713:CDS |
| CTTTATTGGGTGATTGTGGA+TGG | 0.508931 | 5.4:-54147055 | None:intergenic |
| TGCAGCTGTCACTGCTTGTG+CGG | 0.509492 | 5.4:-54150118 | None:intergenic |
| TAGAATCGAGTGAGATTGAC+GGG | 0.511740 | 5.4:+54147090 | MS.gene88713:CDS |
| GGCCAATCAATTGTTGAGAC+CGG | 0.518629 | 5.4:-54145452 | None:intergenic |
| GAGTGGAGCTCATCTACCTT+CGG | 0.521935 | 5.4:+54144366 | MS.gene88713:CDS |
| CTTGGCCGGAAGACAGGGGC+AGG | 0.522527 | 5.4:-54149049 | None:intergenic |
| GTACATGAACTCCACTTGGC+CGG | 0.523164 | 5.4:-54149063 | None:intergenic |
| GCTTCTCATAATATATCTCA+TGG | 0.523993 | 5.4:+54143924 | MS.gene88713:CDS |
| AATTGGTGCATTGCTGGAGG+TGG | 0.527682 | 5.4:-54149142 | None:intergenic |
| CCTCTTCCACAATACAAACC+TGG | 0.528261 | 5.4:+54149253 | MS.gene88713:CDS |
| CTAGTTACTTCGACTGATAC+GGG | 0.529217 | 5.4:-54145764 | None:intergenic |
| AAGTAGCTTCTTCAGTGTCA+AGG | 0.529371 | 5.4:-54145811 | None:intergenic |
| CCATCATCATCAGTAACTCA+TGG | 0.530096 | 5.4:+54145390 | MS.gene88713:CDS |
| GGGAGCTGAGAACCCAACAT+TGG | 0.531833 | 5.4:-54147230 | None:intergenic |
| TTCATGAGGTCAAAAGAAAG+AGG | 0.534333 | 5.4:+54143389 | MS.gene88713:CDS |
| AAAGATTCAAGGTAAATCCC+AGG | 0.535552 | 5.4:+54145332 | MS.gene88713:CDS |
| TCTCAAACAATGGCAGGACC+TGG | 0.536492 | 5.4:+54150165 | MS.gene88713:CDS |
| TGCTGGGAATGGAGAGATAA+CGG | 0.537141 | 5.4:+54144911 | MS.gene88713:CDS |
| CCATAAGGAATGTAGTTTGG+AGG | 0.538103 | 5.4:-54149094 | None:intergenic |
| GGTACTTTATTGGGTGATTG+TGG | 0.538256 | 5.4:-54147059 | None:intergenic |
| CAGCTGGTTCTACTAAGGAA+TGG | 0.538516 | 5.4:+54145678 | MS.gene88713:intron |
| AAAGAGGGACAAAAGAAAGG+AGG | 0.538778 | 5.4:+54143405 | MS.gene88713:CDS |
| CGGTTATTGTAATTAGAGGA+AGG | 0.539416 | 5.4:-54145432 | None:intergenic |
| ATAATTCTGCAGCGACTACC+GGG | 0.541023 | 5.4:+54149356 | MS.gene88713:CDS |
| CAATTGATTGGCCCTCAGAA+AGG | 0.541403 | 5.4:+54145462 | MS.gene88713:CDS |
| GAATTATGATTATAACCAGC+TGG | 0.541828 | 5.4:-54149340 | None:intergenic |
| ACCTTCCGATAAATCAAATG+AGG | 0.542848 | 5.4:+54144980 | MS.gene88713:CDS |
| TACTGCGCCTAGTAATTGCT+TGG | 0.543688 | 5.4:-54150231 | None:intergenic |
| AATGTAGTTTGGAGGGTAAG+GGG | 0.544692 | 5.4:-54149086 | None:intergenic |
| CAATTCATCTGTGCATGCTG+AGG | 0.546216 | 5.4:-54150207 | None:intergenic |
| TTGGAGAAATTTGCACGCCT+GGG | 0.546367 | 5.4:-54147184 | None:intergenic |
| AGCACCTGGTCGGTAAAGCT+GGG | 0.546603 | 5.4:-54147448 | None:intergenic |
| CCTCCAAATGTGTCAGCCCC+AGG | 0.547907 | 5.4:+54149220 | MS.gene88713:CDS |
| CTAATGGCACCAACAGCACC+AGG | 0.548656 | 5.4:-54145101 | None:intergenic |
| AAACTTCCCCGACCACCCCT+AGG | 0.549061 | 5.4:-54143900 | None:intergenic |
| GCCCCTGTCTTCCGGCCAAG+TGG | 0.549737 | 5.4:+54149052 | MS.gene88713:CDS |
| AACTGGGTCGGCATCGTCAT+CGG | 0.551030 | 5.4:+54145022 | MS.gene88713:CDS |
| AGTTCCAGAAGCCACATTTG+TGG | 0.551364 | 5.4:-54144859 | None:intergenic |
| GAGATTGTTGTAGCAACGGA+TGG | 0.553068 | 5.4:-54150146 | None:intergenic |
| TTAGAATCGAGTGAGATTGA+CGG | 0.553569 | 5.4:+54147089 | MS.gene88713:CDS |
| TCGAACTCTCATGAGGATCT+CGG | 0.553962 | 5.4:+54149382 | MS.gene88713:CDS |
| CATAAGGAATGTAGTTTGGA+GGG | 0.554153 | 5.4:-54149093 | None:intergenic |
| GTAGCCCCAGCAGAAGCAAA+AGG | 0.554741 | 5.4:-54147492 | None:intergenic |
| TCCGTGGGCAGCCTGAGTCG+GGG | 0.556072 | 5.4:-54150073 | None:intergenic |
| CAACAATCTCAAACAATGGC+AGG | 0.556793 | 5.4:+54150159 | MS.gene88713:CDS |
| AAATTAGTCATGTCTCGGCC+AGG | 0.558993 | 5.4:-54149997 | None:intergenic |
| GATTGAGCATTTGGAGCAGG+TGG | 0.559667 | 5.4:-54147543 | None:intergenic |
| GCCCCGACTCAGGCTGCCCA+CGG | 0.563199 | 5.4:+54150072 | MS.gene88713:CDS |
| GCCAAGAACAAATTAACTGC+CGG | 0.563373 | 5.4:+54145182 | MS.gene88713:CDS |
| GAGGAAGGGCGACTAACTGA+AGG | 0.568207 | 5.4:-54145417 | None:intergenic |
| CCTGTTGCGACTCAAGCTGC+AGG | 0.568319 | 5.4:+54148992 | MS.gene88713:CDS |
| CAGAAGCAAAAGGAGAAAGA+CGG | 0.569551 | 5.4:-54147482 | None:intergenic |
| AACACTGCTTTGCCGTCCGA+AGG | 0.570438 | 5.4:+54147152 | MS.gene88713:CDS |
| TCTCAAGAAATAGTATCTGA+AGG | 0.570506 | 5.4:+54144415 | MS.gene88713:CDS |
| CCATGAGTTACTGATGATGA+TGG | 0.570613 | 5.4:-54145390 | None:intergenic |
| CTGTGGAGGAGCAGAACTCA+AGG | 0.570858 | 5.4:+54146050 | MS.gene88713:CDS |
| TCTGCGCCCATTATTGCCAA+TGG | 0.571659 | 5.4:+54144834 | MS.gene88713:CDS |
| TTCTACAACCTTCCACCTCA+GGG | 0.571700 | 5.4:+54150033 | MS.gene88713:CDS |
| AGCATTTGATTCCCCAAGAG+AGG | 0.572579 | 5.4:-54145150 | None:intergenic |
| GTGCTTCCCTGAGGTTGTTG+AGG | 0.573411 | 5.4:-54149184 | None:intergenic |
| CTGTCACTGCTTGTGCGGGG+TGG | 0.573678 | 5.4:-54150113 | None:intergenic |
| TGTTGATAAACATTTCCTCC+AGG | 0.575150 | 5.4:-54150183 | None:intergenic |
| AAATGCTCAATCTCCTCAAG+AGG | 0.577511 | 5.4:+54147554 | MS.gene88713:CDS |
| GCATTTGATTCCCCAAGAGA+GGG | 0.578799 | 5.4:-54145149 | None:intergenic |
| TGCCAATGGTCCCACAAATG+TGG | 0.583114 | 5.4:+54144848 | MS.gene88713:CDS |
| GCTACAACAATCTCAAACAA+TGG | 0.584988 | 5.4:+54150155 | MS.gene88713:CDS |
| ATGTAGTTTGGAGGGTAAGG+GGG | 0.585061 | 5.4:-54149085 | None:intergenic |
| TAACTAGCTGGATCATATTG+TGG | 0.585179 | 5.4:-54147420 | None:intergenic |
| CAATAATACTAATAATAATG+TGG | 0.585330 | 5.4:+54144947 | MS.gene88713:CDS |
| AGTAGCTTCTTCAGTGTCAA+GGG | 0.585388 | 5.4:-54145810 | None:intergenic |
| GTATCAATGCAAACCTCTTG+AGG | 0.587331 | 5.4:-54147567 | None:intergenic |
| TCAAGGTAAATCCCAGGGAG+TGG | 0.590490 | 5.4:+54145338 | MS.gene88713:CDS |
| AAGGTTGTAGAATGAAGTAG+TGG | 0.591342 | 5.4:-54150022 | None:intergenic |
| AAATGGTGCACTTACGTCTG+AGG | 0.591740 | 5.4:+54147016 | MS.gene88713:CDS |
| CAGCTGTCACTGCTTGTGCG+GGG | 0.592680 | 5.4:-54150116 | None:intergenic |
| CCAGGATATTGAAGAATCTG+TGG | 0.593048 | 5.4:+54146033 | MS.gene88713:CDS |
| AGATGCTTGCATAAGTTCCG+TGG | 0.593203 | 5.4:-54150089 | None:intergenic |
| AAGCTACTTCAAAACTGCAA+AGG | 0.593709 | 5.4:+54145825 | MS.gene88713:CDS |
| TGATCCAGTACTGGTTCCAT+CGG | 0.595469 | 5.4:+54145064 | MS.gene88713:CDS |
| GAGTGAAGGTTCAGCGATGT+GGG | 0.596741 | 5.4:+54149966 | MS.gene88713:intron |
| TATGCCCAGCTTTACCGACC+AGG | 0.596802 | 5.4:+54147444 | MS.gene88713:CDS |
| TGGGCAAATTAGTCATGTCT+CGG | 0.597854 | 5.4:-54150002 | None:intergenic |
| GTTTGAGATTGTTGTAGCAA+CGG | 0.600037 | 5.4:-54150150 | None:intergenic |
| ACCACTTTCTGAAACATCCC+AGG | 0.600974 | 5.4:+54146015 | MS.gene88713:CDS |
| GTCATATGCTGACCCTGAGG+TGG | 0.601191 | 5.4:-54150045 | None:intergenic |
| TTTGTTCCAGGTTTGTATTG+TGG | 0.601290 | 5.4:-54149259 | None:intergenic |
| GCTGTTACAGGCAAAGAGAG+TGG | 0.601661 | 5.4:+54144349 | MS.gene88713:CDS |
| ATGATTATAACCAGCTGGAG+AGG | 0.603104 | 5.4:-54149335 | None:intergenic |
| CGGCCGTCACTATCAGCACC+TGG | 0.604561 | 5.4:-54147462 | None:intergenic |
| TCATGAGGTCAAAAGAAAGA+GGG | 0.607899 | 5.4:+54143390 | MS.gene88713:CDS |
| ACTGGTAGCTCTTCTGTGCA+AGG | 0.609421 | 5.4:+54145309 | MS.gene88713:CDS |
| TGTGGTGCAACTTTCTCCGA+AGG | 0.612189 | 5.4:-54144382 | None:intergenic |
| AGTTGCTTCTGAAACTGGGT+CGG | 0.612810 | 5.4:+54145010 | MS.gene88713:CDS |
| GACCTTCTCTCAGATACTAG+TGG | 0.613658 | 5.4:+54144316 | MS.gene88713:intron |
| TCTCAACAACAAAGAACATG+TGG | 0.616833 | 5.4:+54143842 | MS.gene88713:CDS |
| GGTTATTGTAATTAGAGGAA+GGG | 0.617353 | 5.4:-54145431 | None:intergenic |
| TCACTCGATTCTAAATTCAC+AGG | 0.621424 | 5.4:-54147080 | None:intergenic |
| TCCACTTGGCCGGAAGACAG+GGG | 0.624961 | 5.4:-54149053 | None:intergenic |
| TGGTGCACTTACGTCTGAGG+TGG | 0.627284 | 5.4:+54147019 | MS.gene88713:CDS |
| CGGGAATTCGAACTCTCATG+AGG | 0.628522 | 5.4:+54149375 | MS.gene88713:CDS |
| TCAACATCAACCCTCTCTTG+GGG | 0.628659 | 5.4:+54145139 | MS.gene88713:CDS |
| GAAAATAACGTATATATCAG+CGG | 0.629067 | 5.4:+54149421 | MS.gene88713:CDS |
| TCCGAAGGTCATCAATACCC+AGG | 0.630730 | 5.4:+54147167 | MS.gene88713:CDS |
| AGAGTGAAGGTTCAGCGATG+TGG | 0.631509 | 5.4:+54149965 | MS.gene88713:intron |
| GATGCTTGCATAAGTTCCGT+GGG | 0.631805 | 5.4:-54150088 | None:intergenic |
| TGGAACCAGTACTGGATCAG+AGG | 0.632149 | 5.4:-54145060 | None:intergenic |
| AGAATATCAAAGAGATCACA+GGG | 0.635001 | 5.4:+54141226 | MS.gene88713:CDS |
| GCATTTCCTCAACAACCTCA+GGG | 0.638456 | 5.4:+54149178 | MS.gene88713:CDS |
| AAGATTCAAGGTAAATCCCA+GGG | 0.641814 | 5.4:+54145333 | MS.gene88713:CDS |
| TATGCTGACCCTGAGGTGGA+AGG | 0.644820 | 5.4:-54150041 | None:intergenic |
| AGGAAGGGCGACTAACTGAA+GGG | 0.645153 | 5.4:-54145416 | None:intergenic |
| GGAGGTATCTTGTCCACAGT+AGG | 0.645987 | 5.4:+54148962 | MS.gene88713:CDS |
| GGGGCTACCACCAAGTACAA+TGG | 0.647638 | 5.4:+54147507 | MS.gene88713:CDS |
| AACCAGTACTGGATCAGAGG+AGG | 0.653183 | 5.4:-54145057 | None:intergenic |
| GGGTATTGATGACCTTCGGA+CGG | 0.653740 | 5.4:-54147164 | None:intergenic |
| ATTGGTGCATTGCTGGAGGT+GGG | 0.656216 | 5.4:-54149141 | None:intergenic |
| AGTATAACGTGTTGACGCTG+TGG | 0.657592 | 5.4:-54145869 | None:intergenic |
| TTCCCAGCAGACGAAAGAGA+AGG | 0.658186 | 5.4:-54144897 | None:intergenic |
| GGAAACCATGAATTATCCGA+TGG | 0.660367 | 5.4:-54145080 | None:intergenic |
| CAAGTACAATGGCAATGTTG+CGG | 0.660818 | 5.4:+54147518 | MS.gene88713:CDS |
| CAAACAATGGCAGGACCTGG+AGG | 0.664067 | 5.4:+54150168 | MS.gene88713:CDS |
| GGATATTGAAGAATCTGTGG+AGG | 0.664638 | 5.4:+54146036 | MS.gene88713:CDS |
| AACAGGTGTTTGACCTACTG+TGG | 0.669264 | 5.4:-54148975 | None:intergenic |
| GTTACTGATGATGATGGAGA+TGG | 0.671333 | 5.4:-54145384 | None:intergenic |
| AAGAGGATATTTGATTCCTG+GGG | 0.672575 | 5.4:-54149236 | None:intergenic |
| AGCTGAGAACCCAACATTGG+GGG | 0.673015 | 5.4:-54147227 | None:intergenic |
| CGTCACTATCAGCACCTGGT+CGG | 0.674868 | 5.4:-54147458 | None:intergenic |
| CGACCAGGTGCTGATAGTGA+CGG | 0.681365 | 5.4:+54147459 | MS.gene88713:CDS |
| GAGCTGAGAACCCAACATTG+GGG | 0.682241 | 5.4:-54147228 | None:intergenic |
| CCAAAGCCAACAAATACATG+TGG | 0.688331 | 5.4:+54145704 | MS.gene88713:CDS |
| AGGTTGTAGAATGAAGTAGT+GGG | 0.688484 | 5.4:-54150021 | None:intergenic |
| GGATGTTTCAGAAAGTGGTG+TGG | 0.689678 | 5.4:-54146011 | None:intergenic |
| CTGAAGAAGAAGCTTCTGAG+TGG | 0.689817 | 5.4:-54141310 | None:intergenic |
| TCTTGAGAAGCTGATAAATG+TGG | 0.691478 | 5.4:-54144400 | None:intergenic |
| AAGAACATGTGGAACCACGC+GGG | 0.698749 | 5.4:+54143853 | MS.gene88713:CDS |
| TGAAGGTTCAGCGATGTGGG+TGG | 0.713947 | 5.4:+54149969 | MS.gene88713:CDS |
| AAAGTCATATGCTGACCCTG+AGG | 0.718391 | 5.4:-54150048 | None:intergenic |
| AAAGAACATGTGGAACCACG+CGG | 0.723349 | 5.4:+54143852 | MS.gene88713:CDS |
| GGATATATAGTGCTTCCCTG+AGG | 0.730562 | 5.4:-54149193 | None:intergenic |
| GTTACTTCGACTGATACGGG+AGG | 0.745635 | 5.4:-54145761 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 54141171 | 54150245 | 54141171 | ID=MS.gene88713 |
| chr5.4 | mRNA | 54141171 | 54150245 | 54141171 | ID=MS.gene88713.t1;Parent=MS.gene88713 |
| chr5.4 | exon | 54141171 | 54141333 | 54141171 | ID=MS.gene88713.t1.exon1;Parent=MS.gene88713.t1 |
| chr5.4 | CDS | 54141171 | 54141333 | 54141171 | ID=cds.MS.gene88713.t1;Parent=MS.gene88713.t1 |
| chr5.4 | exon | 54143383 | 54143426 | 54143383 | ID=MS.gene88713.t1.exon2;Parent=MS.gene88713.t1 |
| chr5.4 | CDS | 54143383 | 54143426 | 54143383 | ID=cds.MS.gene88713.t1;Parent=MS.gene88713.t1 |
| chr5.4 | exon | 54143840 | 54143945 | 54143840 | ID=MS.gene88713.t1.exon3;Parent=MS.gene88713.t1 |
| chr5.4 | CDS | 54143840 | 54143945 | 54143840 | ID=cds.MS.gene88713.t1;Parent=MS.gene88713.t1 |
| chr5.4 | exon | 54144329 | 54144455 | 54144329 | ID=MS.gene88713.t1.exon4;Parent=MS.gene88713.t1 |
| chr5.4 | CDS | 54144329 | 54144455 | 54144329 | ID=cds.MS.gene88713.t1;Parent=MS.gene88713.t1 |
| chr5.4 | exon | 54144833 | 54145203 | 54144833 | ID=MS.gene88713.t1.exon5;Parent=MS.gene88713.t1 |
| chr5.4 | CDS | 54144833 | 54145203 | 54144833 | ID=cds.MS.gene88713.t1;Parent=MS.gene88713.t1 |
| chr5.4 | exon | 54145301 | 54145483 | 54145301 | ID=MS.gene88713.t1.exon6;Parent=MS.gene88713.t1 |
| chr5.4 | CDS | 54145301 | 54145483 | 54145301 | ID=cds.MS.gene88713.t1;Parent=MS.gene88713.t1 |
| chr5.4 | exon | 54145681 | 54146071 | 54145681 | ID=MS.gene88713.t1.exon7;Parent=MS.gene88713.t1 |
| chr5.4 | CDS | 54145681 | 54146071 | 54145681 | ID=cds.MS.gene88713.t1;Parent=MS.gene88713.t1 |
| chr5.4 | exon | 54147013 | 54147310 | 54147013 | ID=MS.gene88713.t1.exon8;Parent=MS.gene88713.t1 |
| chr5.4 | CDS | 54147013 | 54147310 | 54147013 | ID=cds.MS.gene88713.t1;Parent=MS.gene88713.t1 |
| chr5.4 | exon | 54147414 | 54147575 | 54147414 | ID=MS.gene88713.t1.exon9;Parent=MS.gene88713.t1 |
| chr5.4 | CDS | 54147414 | 54147575 | 54147414 | ID=cds.MS.gene88713.t1;Parent=MS.gene88713.t1 |
| chr5.4 | exon | 54148962 | 54149450 | 54148962 | ID=MS.gene88713.t1.exon10;Parent=MS.gene88713.t1 |
| chr5.4 | CDS | 54148962 | 54149450 | 54148962 | ID=cds.MS.gene88713.t1;Parent=MS.gene88713.t1 |
| chr5.4 | exon | 54149967 | 54150245 | 54149967 | ID=MS.gene88713.t1.exon11;Parent=MS.gene88713.t1 |
| chr5.4 | CDS | 54149967 | 54150245 | 54149967 | ID=cds.MS.gene88713.t1;Parent=MS.gene88713.t1 |
| Gene Sequence |
| Protein sequence |
