Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88786.t1 | AES98591.2 | 94.1 | 495 | 29 | 0 | 21 | 515 | 64 | 558 | 3.20E-272 | 947.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88786.t1 | Q84KJ3 | 69.9 | 429 | 128 | 1 | 23 | 450 | 88 | 516 | 8.4e-189 | 661.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88786.t1 | G7KE47 | 94.1 | 495 | 29 | 0 | 21 | 515 | 64 | 558 | 2.3e-272 | 947.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056387 | MS.gene88786 | 0.805729 | 1.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88786 | MS.gene27972 | PPI |
| MS.gene88786 | MS.gene030901 | PPI |
| MS.gene53501 | MS.gene88786 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88786.t1 | MTR_5g070310 | 96.162 | 495 | 19 | 0 | 21 | 515 | 64 | 558 | 0.0 | 993 |
| MS.gene88786.t1 | MTR_4g116900 | 25.246 | 305 | 193 | 13 | 123 | 423 | 161 | 434 | 7.27e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88786.t1 | AT5G58760 | 75.056 | 449 | 111 | 1 | 20 | 467 | 62 | 510 | 0.0 | 729 |
| MS.gene88786.t1 | AT5G58760 | 74.515 | 412 | 105 | 0 | 56 | 467 | 1 | 412 | 0.0 | 665 |
| MS.gene88786.t1 | AT1G80710 | 25.000 | 344 | 206 | 14 | 123 | 450 | 209 | 516 | 2.38e-16 | 82.0 |
Find 120 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAGTCTGCTTGGATTT+TGG | 0.092885 | 5.4:-55232955 | None:intergenic |
| CGTATATGGGATTCTATCTT+TGG | 0.201004 | 5.4:+55231788 | MS.gene88786:CDS |
| GGATTCTATCTTTGGTAATA+TGG | 0.203494 | 5.4:+55231796 | MS.gene88786:CDS |
| AGGACAATCGTCTTCGTATA+TGG | 0.237095 | 5.4:+55231774 | MS.gene88786:CDS |
| AACACCTGGAAAATGCTTTA+TGG | 0.242204 | 5.4:+55231025 | MS.gene88786:CDS |
| CAAAGAAAACAAGGTTTCAT+AGG | 0.255454 | 5.4:-55228545 | None:intergenic |
| CATGCCATCCATCAGGATTC+AGG | 0.269004 | 5.4:-55230844 | None:intergenic |
| AACCATTAGTTGTACTGATT+TGG | 0.271261 | 5.4:+55230793 | MS.gene88786:CDS |
| CAGCTTTGAAGGGTGTTAAA+TGG | 0.287007 | 5.4:-55231862 | None:intergenic |
| CACATACTCCAAAGGTTTAG+AGG | 0.287821 | 5.4:-55229765 | None:intergenic |
| TCCTGGCAACTGGGAGTTCT+AGG | 0.318166 | 5.4:+55232167 | MS.gene88786:CDS |
| CTATATTGTAGGCGCGCATT+TGG | 0.318325 | 5.4:+55231639 | MS.gene88786:intron |
| GCATATTTCTCTCCAATAAC+TGG | 0.326448 | 5.4:+55231728 | MS.gene88786:CDS |
| AAATGAAAAGATTGAGAAAC+TGG | 0.345976 | 5.4:+55228295 | MS.gene88786:CDS |
| TTGGTCTGGAATCACACATT+TGG | 0.346565 | 5.4:-55230331 | None:intergenic |
| TGGATCCCATTCAGCTTTGA+AGG | 0.350384 | 5.4:-55231873 | None:intergenic |
| CATGACTATGCACAATTTCT+CGG | 0.350606 | 5.4:-55231829 | None:intergenic |
| TTAGAGTCACTTGCTGTTGT+TGG | 0.357110 | 5.4:+55231998 | MS.gene88786:CDS |
| AGAAAGGACAACTTGGAGTC+TGG | 0.357633 | 5.4:+55230543 | MS.gene88786:intron |
| GGACTGATGGTTGTGATGTT+CGG | 0.374930 | 5.4:-55232115 | None:intergenic |
| TTTCTGAGAGTTAGCGTAAT+GGG | 0.378118 | 5.4:-55228354 | None:intergenic |
| GTGAAGAAAACCAAAGTTAT+CGG | 0.387021 | 5.4:-55231086 | None:intergenic |
| CGTGATGATATCCTGGCAAC+TGG | 0.388271 | 5.4:+55232157 | MS.gene88786:CDS |
| TGGTCTGGAATCACACATTT+GGG | 0.388716 | 5.4:-55230330 | None:intergenic |
| TACTGAGCATGGTGTTGTTC+CGG | 0.398936 | 5.4:+55229727 | MS.gene88786:CDS |
| CTTGTATCTATAAAATCAAT+AGG | 0.399051 | 5.4:-55232061 | None:intergenic |
| TAATCCTACAAATGATTGTA+TGG | 0.401174 | 5.4:+55230748 | MS.gene88786:CDS |
| CAATTTCCATTCAGTCTGCT+TGG | 0.404544 | 5.4:-55232962 | None:intergenic |
| GACTGATGGTTGTGATGTTC+GGG | 0.410135 | 5.4:-55232114 | None:intergenic |
| TGCATCACCATTCCTATGAT+TGG | 0.418131 | 5.4:-55231442 | None:intergenic |
| CCACAAGTCAAAAGGATGTC+TGG | 0.420331 | 5.4:-55231522 | None:intergenic |
| CATCCTGTTGTCGGGAGATA+AGG | 0.421944 | 5.4:+55230425 | MS.gene88786:CDS |
| CTCCAAATCAGTACAACTAA+TGG | 0.423674 | 5.4:-55230795 | None:intergenic |
| TATATTGTAGGCGCGCATTT+GGG | 0.425675 | 5.4:+55231640 | MS.gene88786:intron |
| TCGACATGCGGTCCAATCAT+AGG | 0.436742 | 5.4:+55231430 | MS.gene88786:CDS |
| CACTTTGAATTGTCCACATC+GGG | 0.441106 | 5.4:+55229700 | MS.gene88786:CDS |
| AGTTGTACTGATTTGGAGAC+TGG | 0.447052 | 5.4:+55230800 | MS.gene88786:CDS |
| CTGGAAAATGCTTTATGGTA+TGG | 0.452127 | 5.4:+55231030 | MS.gene88786:CDS |
| TAGACCATACAATCATTTGT+AGG | 0.454241 | 5.4:-55230752 | None:intergenic |
| TAACCTTATCTCCCGACAAC+AGG | 0.455373 | 5.4:-55230428 | None:intergenic |
| ATCTGAGACGGTCGAGGAGA+AGG | 0.459772 | 5.4:+55232822 | MS.gene88786:CDS |
| GGACAATCGTCTTCGTATAT+GGG | 0.460807 | 5.4:+55231775 | MS.gene88786:CDS |
| ACAGCGCAACTCACTTGGTC+TGG | 0.463787 | 5.4:-55230345 | None:intergenic |
| TAACACCCTTCAAAGCTGAA+TGG | 0.473837 | 5.4:+55231867 | MS.gene88786:CDS |
| ACAACAGCAAGTGACTCTAA+TGG | 0.474300 | 5.4:-55231995 | None:intergenic |
| AAAAGGATGTCTGGTTGCAT+TGG | 0.474611 | 5.4:-55231513 | None:intergenic |
| TAGGAATGGCATGTCTTAGC+TGG | 0.475369 | 5.4:-55229796 | None:intergenic |
| ACCTAGAACTCCCAGTTGCC+AGG | 0.480432 | 5.4:-55232168 | None:intergenic |
| CTATAAAATCAATAGGATGC+AGG | 0.481005 | 5.4:-55232054 | None:intergenic |
| AATATTACATGCCATCCATC+AGG | 0.482629 | 5.4:-55230851 | None:intergenic |
| GATCATTTCCACAAGTCAAA+AGG | 0.485595 | 5.4:-55231530 | None:intergenic |
| GAAAGGACAACTTGGAGTCT+GGG | 0.485905 | 5.4:+55230544 | MS.gene88786:intron |
| AACACCCTTCAAAGCTGAAT+GGG | 0.487045 | 5.4:+55231868 | MS.gene88786:CDS |
| AAGAATAACATCCTGTTGTC+GGG | 0.488018 | 5.4:+55230417 | MS.gene88786:CDS |
| GTGCTCGTGGCCGATAACTT+TGG | 0.491495 | 5.4:+55231076 | MS.gene88786:CDS |
| TTTACTAGGGGCCAAACACC+TGG | 0.499445 | 5.4:+55231011 | MS.gene88786:intron |
| ACTATGCACAATTTCTCGGC+TGG | 0.500089 | 5.4:-55231825 | None:intergenic |
| AAAGAAAACAAGGTTTCATA+GGG | 0.501938 | 5.4:-55228544 | None:intergenic |
| TATAAAATCAATAGGATGCA+GGG | 0.504604 | 5.4:-55232053 | None:intergenic |
| ATCGATGAATCCGATGATGA+TGG | 0.505501 | 5.4:+55232910 | MS.gene88786:CDS |
| GAAGAATAACATCCTGTTGT+CGG | 0.505802 | 5.4:+55230416 | MS.gene88786:CDS |
| TTAAAACCCGCTTCATGACC+AGG | 0.507060 | 5.4:-55228500 | None:intergenic |
| CTGAGAAGAAACGTGGTAAG+AGG | 0.511583 | 5.4:+55232875 | MS.gene88786:CDS |
| TCATAAAAGAAAGGACAACT+TGG | 0.517742 | 5.4:+55230536 | MS.gene88786:intron |
| GGATCCCATTCAGCTTTGAA+GGG | 0.518856 | 5.4:-55231872 | None:intergenic |
| GAAAGCAAAATTGTGGTTTG+TGG | 0.518880 | 5.4:+55232847 | MS.gene88786:CDS |
| TCATCCACGTGATGATATCC+TGG | 0.520328 | 5.4:+55232150 | MS.gene88786:CDS |
| TAACAACACGCTTGTGCTCA+AGG | 0.528107 | 5.4:-55231700 | None:intergenic |
| AAGCTTATTCACCGGACTGA+TGG | 0.528676 | 5.4:-55232128 | None:intergenic |
| GTCTATTCCGCATCCTCAGA+TGG | 0.528780 | 5.4:+55230770 | MS.gene88786:CDS |
| TGATAACAGCGCAACTCACT+TGG | 0.530316 | 5.4:-55230350 | None:intergenic |
| AAAGATTGAGAAACTGGAAG+TGG | 0.531341 | 5.4:+55228301 | MS.gene88786:CDS |
| ATGGATATTCACTATGAGAA+AGG | 0.532012 | 5.4:+55231049 | MS.gene88786:CDS |
| CAAAATCCAAGCAGACTGAA+TGG | 0.532156 | 5.4:+55232956 | MS.gene88786:CDS |
| TGAGAAGGTTTACGAGAAAG+TGG | 0.536172 | 5.4:+55230571 | MS.gene88786:CDS |
| CTATGCACAATTTCTCGGCT+GGG | 0.540395 | 5.4:-55231824 | None:intergenic |
| CCATCAGGATTCAGGTTCAT+CGG | 0.543513 | 5.4:-55230836 | None:intergenic |
| AAGAAGCCTGGTCATGAAGC+GGG | 0.545678 | 5.4:+55228494 | MS.gene88786:CDS |
| CAAAATTCTTACTACGTCAC+AGG | 0.548895 | 5.4:+55231754 | MS.gene88786:CDS |
| AACTCTCAGAAAAGTTTGCA+AGG | 0.549049 | 5.4:+55228365 | MS.gene88786:CDS |
| GATATGCGTCACTTAGAAGC+TGG | 0.550288 | 5.4:+55231662 | MS.gene88786:CDS |
| AAGATTGAGAAACTGGAAGT+GGG | 0.551746 | 5.4:+55228302 | MS.gene88786:CDS |
| CCGATGAACCTGAATCCTGA+TGG | 0.557467 | 5.4:+55230836 | MS.gene88786:CDS |
| AAGAAACGTGGTAAGAGGAA+AGG | 0.563572 | 5.4:+55232880 | MS.gene88786:CDS |
| TAGTAGACGGATAACAAGCT+TGG | 0.565758 | 5.4:+55230380 | MS.gene88786:CDS |
| TTATAGGTGTGTAAGAAGCC+TGG | 0.566694 | 5.4:+55228482 | MS.gene88786:intron |
| ACAGGATGTTATTCTTCGTA+GGG | 0.566721 | 5.4:-55230410 | None:intergenic |
| GCAGTTGGTAGCAGAAGTCA+TGG | 0.572898 | 5.4:+55232090 | MS.gene88786:CDS |
| AATGGTTCCATCTGAGGATG+CGG | 0.574097 | 5.4:-55230777 | None:intergenic |
| ACAACTAATGGTTCCATCTG+AGG | 0.576667 | 5.4:-55230783 | None:intergenic |
| AGATACAAGTACAGGGCAGT+TGG | 0.578810 | 5.4:+55232075 | MS.gene88786:CDS |
| TGAGAAAGGTCTTGTGCTCG+TGG | 0.581673 | 5.4:+55231063 | MS.gene88786:CDS |
| GGAAATGAATCCATCATCAT+CGG | 0.582701 | 5.4:-55232920 | None:intergenic |
| TCTGTTCATTTGGAAGCCAA+AGG | 0.589673 | 5.4:+55232795 | MS.gene88786:CDS |
| CGTGGATGAAGCTTATTCAC+CGG | 0.591688 | 5.4:-55232136 | None:intergenic |
| CAAAGCTGAATGGGATCCAA+AGG | 0.592946 | 5.4:+55231877 | MS.gene88786:CDS |
| GAACATCACAACCATCAGTC+CGG | 0.595957 | 5.4:+55232117 | MS.gene88786:CDS |
| ACTTAGGCTTACCGTAGGAA+TGG | 0.598093 | 5.4:-55229810 | None:intergenic |
| ATGCGGTCCAATCATAGGAA+TGG | 0.598179 | 5.4:+55231435 | MS.gene88786:CDS |
| GGATGTTATTCTTCGTAGGG+TGG | 0.599457 | 5.4:-55230407 | None:intergenic |
| ATTGTCTCGCTGCTCGACAA+AGG | 0.600055 | 5.4:+55232981 | MS.gene88786:CDS |
| CTGGTTGCATTGGATTGCAA+TGG | 0.602433 | 5.4:-55231503 | None:intergenic |
| TAAGAAGCCTGGTCATGAAG+CGG | 0.617194 | 5.4:+55228493 | MS.gene88786:CDS |
| CATCGGGTCACTACTGAGCA+TGG | 0.620894 | 5.4:+55229716 | MS.gene88786:CDS |
| CGTTCAAACACATACTCCAA+AGG | 0.622066 | 5.4:-55229773 | None:intergenic |
| TTATCAGATATCATAGTAGA+CGG | 0.622532 | 5.4:+55230367 | MS.gene88786:CDS |
| GTGATGATATCCTGGCAACT+GGG | 0.623672 | 5.4:+55232158 | MS.gene88786:CDS |
| AACAGGATGTTATTCTTCGT+AGG | 0.624223 | 5.4:-55230411 | None:intergenic |
| GAAGGACGAAAGCAAAATTG+TGG | 0.625614 | 5.4:+55232840 | MS.gene88786:CDS |
| CCACTTTGAATTGTCCACAT+CGG | 0.628827 | 5.4:+55229699 | MS.gene88786:CDS |
| TGCTCAGTAGTGACCCGATG+TGG | 0.633127 | 5.4:-55229713 | None:intergenic |
| GTCATTACAGGGTCGACATG+CGG | 0.635357 | 5.4:+55231418 | MS.gene88786:intron |
| GCTAAGACATGCCATTCCTA+CGG | 0.637351 | 5.4:+55229799 | MS.gene88786:CDS |
| GCTTGTGCTCAAGGCTACAG+AGG | 0.642505 | 5.4:-55231691 | None:intergenic |
| TGAACCTGAATCCTGATGGA+TGG | 0.648338 | 5.4:+55230840 | MS.gene88786:CDS |
| CTTGTGCTCAAGGCTACAGA+GGG | 0.650690 | 5.4:-55231690 | None:intergenic |
| AGGATTCAGGTTCATCGGAG+AGG | 0.675833 | 5.4:-55230831 | None:intergenic |
| CCGATGTGGACAATTCAAAG+TGG | 0.705167 | 5.4:-55229699 | None:intergenic |
| GGAAAAGCTGAGAAGAAACG+TGG | 0.725862 | 5.4:+55232868 | MS.gene88786:CDS |
| GTTGCCAGGATATCATCACG+TGG | 0.762098 | 5.4:-55232154 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGAACAATTTAATTAT+TGG | - | chr5.4:55230163-55230182 | None:intergenic | 10.0% |
| !! | ATAATTTAAGAAAAAACATT+TGG | - | chr5.4:55230882-55230901 | None:intergenic | 10.0% |
| !!! | TAAAATTTTCACTTATATAA+CGG | - | chr5.4:55232024-55232043 | None:intergenic | 10.0% |
| !!! | TATATAAGTGAAAATTTTAA+TGG | + | chr5.4:55232025-55232044 | MS.gene88786:CDS | 10.0% |
| !! | AAGCTATATTATTAATCTTA+AGG | + | chr5.4:55232740-55232759 | MS.gene88786:intron | 15.0% |
| !! | AATCAAAATTTCAACTTTAA+AGG | - | chr5.4:55232514-55232533 | None:intergenic | 15.0% |
| !! | AGCTATATTATTAATCTTAA+GGG | + | chr5.4:55232741-55232760 | MS.gene88786:intron | 15.0% |
| !! | ATGTAATTTACAGTAATAAT+AGG | - | chr5.4:55230454-55230473 | None:intergenic | 15.0% |
| !! | ATTCTTAAAAAGATAAATGT+TGG | - | chr5.4:55231313-55231332 | None:intergenic | 15.0% |
| !! | TATACAAATAAAAAAGGAAA+TGG | - | chr5.4:55229393-55229412 | None:intergenic | 15.0% |
| !! | TTTGTTAATTAGATATACAT+AGG | + | chr5.4:55232689-55232708 | MS.gene88786:intron | 15.0% |
| !!! | AGTTTTCCTATTAAAAAATT+AGG | - | chr5.4:55229291-55229310 | None:intergenic | 15.0% |
| !!! | ATATTTTAAAAGAATGACTT+AGG | - | chr5.4:55229829-55229848 | None:intergenic | 15.0% |
| !!! | TTGAATATGTTTCTTTTAAT+TGG | + | chr5.4:55231215-55231234 | MS.gene88786:intron | 15.0% |
| !!! | TTTTAATTGAAAAACTTTGT+AGG | + | chr5.4:55230723-55230742 | MS.gene88786:intron | 15.0% |
| !! | AAAAAAATTCATAACTACGA+AGG | - | chr5.4:55231257-55231276 | None:intergenic | 20.0% |
| !! | AAAAAATTCATAACTACGAA+GGG | - | chr5.4:55231256-55231275 | None:intergenic | 20.0% |
| !! | AAAATAAGTAGAAACGAAAA+GGG | - | chr5.4:55231944-55231963 | None:intergenic | 20.0% |
| !! | AATATTGTTTATGTAATTGC+AGG | + | chr5.4:55231970-55231989 | MS.gene88786:intron | 20.0% |
| !! | ATAATTACATGACTGAAAAA+AGG | - | chr5.4:55230003-55230022 | None:intergenic | 20.0% |
| !! | CTGATAATAGTTTAAGAAAA+TGG | + | chr5.4:55228908-55228927 | MS.gene88786:intron | 20.0% |
| !! | CTTGTATCTATAAAATCAAT+AGG | - | chr5.4:55232064-55232083 | None:intergenic | 20.0% |
| !! | GAACTTGAATATGTATAAAA+AGG | - | chr5.4:55231571-55231590 | None:intergenic | 20.0% |
| !! | GTTGCATATACAAATAAAAA+AGG | - | chr5.4:55229399-55229418 | None:intergenic | 20.0% |
| !! | TAAAATAAGTAGAAACGAAA+AGG | - | chr5.4:55231945-55231964 | None:intergenic | 20.0% |
| !! | TAATTACATGACTGAAAAAA+GGG | - | chr5.4:55230002-55230021 | None:intergenic | 20.0% |
| !! | TCCACAATGAAAATATTAAA+AGG | - | chr5.4:55230136-55230155 | None:intergenic | 20.0% |
| !! | TCCATATAAAATCATCTTTA+AGG | - | chr5.4:55228767-55228786 | None:intergenic | 20.0% |
| !! | TGAATGATACATAAACATTA+TGG | - | chr5.4:55230234-55230253 | None:intergenic | 20.0% |
| !!! | AATATATTTTGCTATAATGC+CGG | - | chr5.4:55229105-55229124 | None:intergenic | 20.0% |
| !!! | ACATGACCTAATTTTTTAAT+AGG | + | chr5.4:55229282-55229301 | MS.gene88786:intron | 20.0% |
| !!! | ATGAATTTTTTTCTTGGTTA+GGG | + | chr5.4:55231265-55231284 | MS.gene88786:intron | 20.0% |
| !!! | ATTTTATAGATACAAGTACA+GGG | + | chr5.4:55232068-55232087 | MS.gene88786:CDS | 20.0% |
| !!! | GTAGTTATGAATTTTTTTCT+TGG | + | chr5.4:55231259-55231278 | MS.gene88786:intron | 20.0% |
| !!! | GTTACTTGATATAATTTTTC+AGG | + | chr5.4:55232770-55232789 | MS.gene88786:intron | 20.0% |
| !!! | TATGAATTTTTTTCTTGGTT+AGG | + | chr5.4:55231264-55231283 | MS.gene88786:intron | 20.0% |
| !!! | TATTACATTTTAGGACTATA+TGG | - | chr5.4:55231162-55231181 | None:intergenic | 20.0% |
| !!! | TCCTTAAAGATGATTTTATA+TGG | + | chr5.4:55228763-55228782 | MS.gene88786:intron | 20.0% |
| !!! | TCCTTTTAATATTTTCATTG+TGG | + | chr5.4:55230132-55230151 | MS.gene88786:intron | 20.0% |
| !!! | TGTATGTGTTATTTTTACTA+GGG | + | chr5.4:55230998-55231017 | MS.gene88786:intron | 20.0% |
| !!! | TTGTATGTGTTATTTTTACT+AGG | + | chr5.4:55230997-55231016 | MS.gene88786:intron | 20.0% |
| !!! | TTTATTGATTAGCAATATGA+TGG | + | chr5.4:55229556-55229575 | MS.gene88786:intron | 20.0% |
| !!! | TTTGATTTACAAAATTGCAA+GGG | + | chr5.4:55232527-55232546 | MS.gene88786:intron | 20.0% |
| !!! | TTTTGATTTACAAAATTGCA+AGG | + | chr5.4:55232526-55232545 | MS.gene88786:intron | 20.0% |
| ! | AAAAATGTTGTGTTTGTTTG+AGG | + | chr5.4:55228700-55228719 | MS.gene88786:intron | 25.0% |
| ! | AAAGAAAACAAGGTTTCATA+GGG | - | chr5.4:55228547-55228566 | None:intergenic | 25.0% |
| ! | AAAGATAAATGTTGGAAAGA+TGG | - | chr5.4:55231305-55231324 | None:intergenic | 25.0% |
| ! | AAAGGCTTAAAAATTTGATG+AGG | - | chr5.4:55232496-55232515 | None:intergenic | 25.0% |
| ! | AAATGAAAAGATTGAGAAAC+TGG | + | chr5.4:55228295-55228314 | MS.gene88786:CDS | 25.0% |
| ! | CAAAATGGTTTCTATATTGT+AGG | + | chr5.4:55231628-55231647 | MS.gene88786:intron | 25.0% |
| ! | CAATATGGTATATTGTGATT+TGG | + | chr5.4:55229936-55229955 | MS.gene88786:intron | 25.0% |
| ! | CTGCTTTAATCATAAAAGAA+AGG | + | chr5.4:55230527-55230546 | MS.gene88786:intron | 25.0% |
| ! | GAAAATGAACAATTACATGA+AGG | - | chr5.4:55230661-55230680 | None:intergenic | 25.0% |
| ! | GTTGAAAAGTTTGCATATTA+CGG | - | chr5.4:55229345-55229364 | None:intergenic | 25.0% |
| ! | TAAGCCTTCAATTTATGAAT+AGG | - | chr5.4:55230086-55230105 | None:intergenic | 25.0% |
| ! | TAATCCTACAAATGATTGTA+TGG | + | chr5.4:55230748-55230767 | MS.gene88786:CDS | 25.0% |
| ! | TATAAAATCAATAGGATGCA+GGG | - | chr5.4:55232056-55232075 | None:intergenic | 25.0% |
| ! | TATGATTAAAGCAGAAAAAG+AGG | - | chr5.4:55230521-55230540 | None:intergenic | 25.0% |
| ! | TCATATATGAAGGACTAAAT+AGG | - | chr5.4:55230209-55230228 | None:intergenic | 25.0% |
| ! | TTAAACAAAAAAGCTACCTT+TGG | - | chr5.4:55231896-55231915 | None:intergenic | 25.0% |
| ! | TTATCAGATATCATAGTAGA+CGG | + | chr5.4:55230367-55230386 | MS.gene88786:CDS | 25.0% |
| ! | TTCTGTATCCATACTATTAA+AGG | - | chr5.4:55232721-55232740 | None:intergenic | 25.0% |
| !! | AATTGGTTTCATATATGACA+TGG | - | chr5.4:55231370-55231389 | None:intergenic | 25.0% |
| !! | CTGTTTTATGTGTTTCAATA+TGG | + | chr5.4:55229921-55229940 | MS.gene88786:intron | 25.0% |
| !! | GATGATTTTATATGGAACAA+AGG | + | chr5.4:55228771-55228790 | MS.gene88786:intron | 25.0% |
| !! | GATTTTATAGATACAAGTAC+AGG | + | chr5.4:55232067-55232086 | MS.gene88786:CDS | 25.0% |
| !! | TTTAGCATTCACTCTTTTAT+TGG | - | chr5.4:55232441-55232460 | None:intergenic | 25.0% |
| !!! | AGAATTTTGTTTCCAGTTAT+TGG | - | chr5.4:55231743-55231762 | None:intergenic | 25.0% |
| !!! | ATGATTGATTTGTTCTTGTA+AGG | + | chr5.4:55228820-55228839 | MS.gene88786:intron | 25.0% |
| !!! | CTTTAGTTTTGAAGAATGTT+TGG | + | chr5.4:55229858-55229877 | MS.gene88786:intron | 25.0% |
| !!! | GTATGTGTTATTTTTACTAG+GGG | + | chr5.4:55230999-55231018 | MS.gene88786:intron | 25.0% |
| !!! | TAACTTTGCTACCTTTTTTA+TGG | - | chr5.4:55231476-55231495 | None:intergenic | 25.0% |
| !!! | TCTTGTTGGTTTAAAACATT+GGG | + | chr5.4:55232360-55232379 | MS.gene88786:intron | 25.0% |
| !!! | TGTTGGAATTTTGTTGTTAT+AGG | + | chr5.4:55228466-55228485 | MS.gene88786:intron | 25.0% |
| !!! | TTTGATTTTACTAGTGAATG+TGG | + | chr5.4:55228621-55228640 | MS.gene88786:intron | 25.0% |
| AAAAAAGGTAGCAAAGTTAC+TGG | + | chr5.4:55231477-55231496 | MS.gene88786:CDS | 30.0% | |
| AAAATTGAACCTACACAAAG+TGG | + | chr5.4:55232394-55232413 | MS.gene88786:intron | 30.0% | |
| ACGATTAGTATGATTATCTG+AGG | - | chr5.4:55232206-55232225 | None:intergenic | 30.0% | |
| ACTATCCTAGATTCACAATT+AGG | + | chr5.4:55229152-55229171 | MS.gene88786:intron | 30.0% | |
| ATACCAATACAAACAATACG+AGG | - | chr5.4:55228602-55228621 | None:intergenic | 30.0% | |
| ATGGATATTCACTATGAGAA+AGG | + | chr5.4:55231049-55231068 | MS.gene88786:CDS | 30.0% | |
| ATTACCCTAATTGTGAATCT+AGG | - | chr5.4:55229160-55229179 | None:intergenic | 30.0% | |
| ATTCACAATTAGGGTAATAG+TGG | + | chr5.4:55229162-55229181 | MS.gene88786:intron | 30.0% | |
| ATTCCTCGTATTGTTTGTAT+TGG | + | chr5.4:55228596-55228615 | MS.gene88786:intron | 30.0% | |
| CAAAGAAAACAAGGTTTCAT+AGG | - | chr5.4:55228548-55228567 | None:intergenic | 30.0% | |
| CACACCTATTCATAAATTGA+AGG | + | chr5.4:55230079-55230098 | MS.gene88786:intron | 30.0% | |
| CAGTGTAAACGAAAAAGTAA+TGG | - | chr5.4:55229967-55229986 | None:intergenic | 30.0% | |
| CATTATGGACTCATATATGA+AGG | - | chr5.4:55230219-55230238 | None:intergenic | 30.0% | |
| CTATAAAATCAATAGGATGC+AGG | - | chr5.4:55232057-55232076 | None:intergenic | 30.0% | |
| CTATAGCCAACAAAATTTGA+TGG | - | chr5.4:55231192-55231211 | None:intergenic | 30.0% | |
| CTATCCTAGATTCACAATTA+GGG | + | chr5.4:55229153-55229172 | MS.gene88786:intron | 30.0% | |
| CTTCAATTTATGAATAGGTG+TGG | - | chr5.4:55230081-55230100 | None:intergenic | 30.0% | |
| GACTTATTTCAACTGTTATG+CGG | + | chr5.4:55229441-55229460 | MS.gene88786:intron | 30.0% | |
| GAGAGAAAAATATTGAGACA+AGG | - | chr5.4:55229594-55229613 | None:intergenic | 30.0% | |
| GTGAAGAAAACCAAAGTTAT+CGG | - | chr5.4:55231089-55231108 | None:intergenic | 30.0% | |
| TACATGAGTTTACTCTTCAA+TGG | - | chr5.4:55232573-55232592 | None:intergenic | 30.0% | |
| TAGACCATACAATCATTTGT+AGG | - | chr5.4:55230755-55230774 | None:intergenic | 30.0% | |
| TAGTCATTGAGTCCAAAAAA+AGG | + | chr5.4:55231336-55231355 | MS.gene88786:intron | 30.0% | |
| TCATAAAAGAAAGGACAACT+TGG | + | chr5.4:55230536-55230555 | MS.gene88786:intron | 30.0% | |
| TGTCTGACATCAATAAATGT+CGG | + | chr5.4:55228942-55228961 | MS.gene88786:intron | 30.0% | |
| ! | AATAAAATGAAGAGTGTGTC+TGG | - | chr5.4:55229542-55229561 | None:intergenic | 30.0% |
| ! | ATAAAATGAAGAGTGTGTCT+GGG | - | chr5.4:55229541-55229560 | None:intergenic | 30.0% |
| ! | ATGCAATAGTGGGAAAAAAA+GGG | + | chr5.4:55229214-55229233 | MS.gene88786:intron | 30.0% |
| ! | CAGTCTAGAACTCAAATAAA+AGG | + | chr5.4:55229034-55229053 | MS.gene88786:intron | 30.0% |
| ! | GGAGGGATATATTACATTTT+AGG | - | chr5.4:55231171-55231190 | None:intergenic | 30.0% |
| ! | GGAGTTTTACAAAGAAAACA+AGG | - | chr5.4:55228557-55228576 | None:intergenic | 30.0% |
| ! | GGATTCTATCTTTGGTAATA+TGG | + | chr5.4:55231796-55231815 | MS.gene88786:CDS | 30.0% |
| ! | TGTCTCAATATTTTTCTCTC+TGG | + | chr5.4:55229594-55229613 | MS.gene88786:intron | 30.0% |
| ! | TGTGGTTTGATGATATATGA+TGG | + | chr5.4:55228639-55228658 | MS.gene88786:intron | 30.0% |
| ! | TGTTTTCTTTGTAAAACTCC+TGG | + | chr5.4:55228557-55228576 | MS.gene88786:CDS | 30.0% |
| !! | AACCATTAGTTGTACTGATT+TGG | + | chr5.4:55230793-55230812 | MS.gene88786:CDS | 30.0% |
| !! | CTCTTGTTGGTTTAAAACAT+TGG | + | chr5.4:55232359-55232378 | MS.gene88786:intron | 30.0% |
| !! | GAACAAAGGTGATTTTGTTT+TGG | + | chr5.4:55228785-55228804 | MS.gene88786:intron | 30.0% |
| !! | GCAGTTTTGATCCATAAAAA+AGG | + | chr5.4:55231462-55231481 | MS.gene88786:CDS | 30.0% |
| !! | GTTTTGATCCTAATAGGAAA+GGG | + | chr5.4:55228324-55228343 | MS.gene88786:CDS | 30.0% |
| !!! | ATGGCTATAGATCCTTTTTT+TGG | - | chr5.4:55231351-55231370 | None:intergenic | 30.0% |
| !!! | ATGTTGATTTTCAACTTACC+AGG | - | chr5.4:55228578-55228597 | None:intergenic | 30.0% |
| !!! | CTTTTATTTGAGTTCTAGAC+TGG | - | chr5.4:55229036-55229055 | None:intergenic | 30.0% |
| !!! | GTTTTTTTCCCTTTCCTATT+AGG | - | chr5.4:55228335-55228354 | None:intergenic | 30.0% |
| AAAGATTGAGAAACTGGAAG+TGG | + | chr5.4:55228301-55228320 | MS.gene88786:CDS | 35.0% | |
| AACACCTGGAAAATGCTTTA+TGG | + | chr5.4:55231025-55231044 | MS.gene88786:CDS | 35.0% | |
| AACAGGATGTTATTCTTCGT+AGG | - | chr5.4:55230414-55230433 | None:intergenic | 35.0% | |
| AACTCTCAGAAAAGTTTGCA+AGG | + | chr5.4:55228365-55228384 | MS.gene88786:CDS | 35.0% | |
| AAGAATAACATCCTGTTGTC+GGG | + | chr5.4:55230417-55230436 | MS.gene88786:CDS | 35.0% | |
| AAGATTGAGAAACTGGAAGT+GGG | + | chr5.4:55228302-55228321 | MS.gene88786:CDS | 35.0% | |
| AATATTACATGCCATCCATC+AGG | - | chr5.4:55230854-55230873 | None:intergenic | 35.0% | |
| ACAGGATGTTATTCTTCGTA+GGG | - | chr5.4:55230413-55230432 | None:intergenic | 35.0% | |
| ACATGCATGCTGAAACAAAA+TGG | + | chr5.4:55231613-55231632 | MS.gene88786:intron | 35.0% | |
| ACATTTACAGAATGACCTTG+AGG | - | chr5.4:55230946-55230965 | None:intergenic | 35.0% | |
| AGAGTATGTTATGCCATGTT+TGG | + | chr5.4:55228727-55228746 | MS.gene88786:intron | 35.0% | |
| AGCCAACAAAATTTGATGGA+GGG | - | chr5.4:55231188-55231207 | None:intergenic | 35.0% | |
| AGCTAATGTAGATGCAATAG+TGG | + | chr5.4:55229203-55229222 | MS.gene88786:intron | 35.0% | |
| AGGAATCAGTGGCTAAATAA+AGG | - | chr5.4:55230501-55230520 | None:intergenic | 35.0% | |
| ATTTGTTCTTGTAAGGACTG+GGG | + | chr5.4:55228827-55228846 | MS.gene88786:intron | 35.0% | |
| CAAAATTCTTACTACGTCAC+AGG | + | chr5.4:55231754-55231773 | MS.gene88786:CDS | 35.0% | |
| CAAGTCAATATCGCAAAAGA+TGG | - | chr5.4:55229670-55229689 | None:intergenic | 35.0% | |
| CAGAAAAACCTCTAAACCTT+TGG | + | chr5.4:55229757-55229776 | MS.gene88786:CDS | 35.0% | |
| CATCAATAAATGTCGGATAC+TGG | + | chr5.4:55228949-55228968 | MS.gene88786:intron | 35.0% | |
| CATGACTATGCACAATTTCT+CGG | - | chr5.4:55231832-55231851 | None:intergenic | 35.0% | |
| CGTATATGGGATTCTATCTT+TGG | + | chr5.4:55231788-55231807 | MS.gene88786:CDS | 35.0% | |
| CTCCAAATCAGTACAACTAA+TGG | - | chr5.4:55230798-55230817 | None:intergenic | 35.0% | |
| CTGGAAAATGCTTTATGGTA+TGG | + | chr5.4:55231030-55231049 | MS.gene88786:CDS | 35.0% | |
| GAAAGCAAAATTGTGGTTTG+TGG | + | chr5.4:55232847-55232866 | MS.gene88786:CDS | 35.0% | |
| GAACAATTACATGAAGGTTG+TGG | - | chr5.4:55230655-55230674 | None:intergenic | 35.0% | |
| GAAGAATAACATCCTGTTGT+CGG | + | chr5.4:55230416-55230435 | MS.gene88786:CDS | 35.0% | |
| GACACAATGTTATCAAACAC+CGG | + | chr5.4:55229083-55229102 | MS.gene88786:intron | 35.0% | |
| GAGTATGTTATGCCATGTTT+GGG | + | chr5.4:55228728-55228747 | MS.gene88786:intron | 35.0% | |
| GATATGTCTGGTATGCTAAT+TGG | - | chr5.4:55231387-55231406 | None:intergenic | 35.0% | |
| GATCATTTCCACAAGTCAAA+AGG | - | chr5.4:55231533-55231552 | None:intergenic | 35.0% | |
| GCATATTTCTCTCCAATAAC+TGG | + | chr5.4:55231728-55231747 | MS.gene88786:CDS | 35.0% | |
| GCTAATGTAGATGCAATAGT+GGG | + | chr5.4:55229204-55229223 | MS.gene88786:intron | 35.0% | |
| GGAAATGAATCCATCATCAT+CGG | - | chr5.4:55232923-55232942 | None:intergenic | 35.0% | |
| GGACTTTGCCTTTAATAGTA+TGG | + | chr5.4:55232710-55232729 | MS.gene88786:intron | 35.0% | |
| GGGAAAAAAAGGGAATCTTA+GGG | + | chr5.4:55229224-55229243 | MS.gene88786:intron | 35.0% | |
| TAGCCAACAAAATTTGATGG+AGG | - | chr5.4:55231189-55231208 | None:intergenic | 35.0% | |
| TGGGAAAAAAAGGGAATCTT+AGG | + | chr5.4:55229223-55229242 | MS.gene88786:intron | 35.0% | |
| TGTATCATTCACTTTGTTCC+AGG | + | chr5.4:55230243-55230262 | MS.gene88786:intron | 35.0% | |
| TTGCATATTACGGTGAATCT+AGG | - | chr5.4:55229335-55229354 | None:intergenic | 35.0% | |
| ! | AAGGTTTAGAGGTTTTTCTG+CGG | - | chr5.4:55229757-55229776 | None:intergenic | 35.0% |
| ! | AAGTTTGCAAGGTTTGTTCA+TGG | + | chr5.4:55228376-55228395 | MS.gene88786:intron | 35.0% |
| ! | AGAGTTTTTGCTCGAACTTA+GGG | + | chr5.4:55230109-55230128 | MS.gene88786:intron | 35.0% |
| ! | ATCCCTCCATCAAATTTTGT+TGG | + | chr5.4:55231183-55231202 | MS.gene88786:intron | 35.0% |
| ! | ATTGTGAATCTAGGATAGTG+TGG | - | chr5.4:55229151-55229170 | None:intergenic | 35.0% |
| ! | GATGCAATAGTGGGAAAAAA+AGG | + | chr5.4:55229213-55229232 | MS.gene88786:intron | 35.0% |
| ! | GATTTGTTCTTGTAAGGACT+GGG | + | chr5.4:55228826-55228845 | MS.gene88786:intron | 35.0% |
| ! | GCGATTTTTCTTATGAGTGT+TGG | + | chr5.4:55228449-55228468 | MS.gene88786:intron | 35.0% |
| ! | GGTGTTTGATAACATTGTGT+CGG | - | chr5.4:55229084-55229103 | None:intergenic | 35.0% |
| ! | TAACCTTCTGTGTCATTACA+GGG | + | chr5.4:55231407-55231426 | MS.gene88786:intron | 35.0% |
| ! | TTTAGGACTATATGGACATG+CGG | - | chr5.4:55231154-55231173 | None:intergenic | 35.0% |
| ! | TTTCTGAGAGTTAGCGTAAT+GGG | - | chr5.4:55228357-55228376 | None:intergenic | 35.0% |
| !! | AAGTGGGTTTTGATCCTAAT+AGG | + | chr5.4:55228318-55228337 | MS.gene88786:CDS | 35.0% |
| !! | ACTCTATCTGCTATTTCACA+TGG | + | chr5.4:55229483-55229502 | MS.gene88786:intron | 35.0% |
| !! | CATACCATAAAGCATTTTCC+AGG | - | chr5.4:55231032-55231051 | None:intergenic | 35.0% |
| !! | GGTTTTGATCCTAATAGGAA+AGG | + | chr5.4:55228323-55228342 | MS.gene88786:CDS | 35.0% |
| !! | TAAAGCATTTTCCAGGTGTT+TGG | - | chr5.4:55231025-55231044 | None:intergenic | 35.0% |
| !! | TGATTTGTTCTTGTAAGGAC+TGG | + | chr5.4:55228825-55228844 | MS.gene88786:intron | 35.0% |
| !! | TTTTCTGAGAGTTAGCGTAA+TGG | - | chr5.4:55228358-55228377 | None:intergenic | 35.0% |
| !!! | CTTTTGCGATATTGACTTGA+AGG | + | chr5.4:55229671-55229690 | MS.gene88786:intron | 35.0% |
| !!! | GTATGAGTGTTAGTTTTGTC+CGG | - | chr5.4:55228887-55228906 | None:intergenic | 35.0% |
| !!! | TTTTCAGGTCTCTGTTCATT+TGG | + | chr5.4:55232785-55232804 | MS.gene88786:intron | 35.0% |
| AAAAGGATGTCTGGTTGCAT+TGG | - | chr5.4:55231516-55231535 | None:intergenic | 40.0% | |
| AACACCCTTCAAAGCTGAAT+GGG | + | chr5.4:55231868-55231887 | MS.gene88786:CDS | 40.0% | |
| AAGAAACGTGGTAAGAGGAA+AGG | + | chr5.4:55232880-55232899 | MS.gene88786:CDS | 40.0% | |
| ACAACAGCAAGTGACTCTAA+TGG | - | chr5.4:55231998-55232017 | None:intergenic | 40.0% | |
| ACAACTAATGGTTCCATCTG+AGG | - | chr5.4:55230786-55230805 | None:intergenic | 40.0% | |
| AGCAGAAAAAGAGGAATCAG+TGG | - | chr5.4:55230512-55230531 | None:intergenic | 40.0% | |
| AGGACAATCGTCTTCGTATA+TGG | + | chr5.4:55231774-55231793 | MS.gene88786:CDS | 40.0% | |
| ATCGATGAATCCGATGATGA+TGG | + | chr5.4:55232910-55232929 | MS.gene88786:CDS | 40.0% | |
| ATGTTATGCCATGTTTGGGA+AGG | + | chr5.4:55228732-55228751 | MS.gene88786:intron | 40.0% | |
| ATTGAACCTACACAAAGTGG+TGG | + | chr5.4:55232397-55232416 | MS.gene88786:intron | 40.0% | |
| CAAAATCCAAGCAGACTGAA+TGG | + | chr5.4:55232956-55232975 | MS.gene88786:CDS | 40.0% | |
| CAATTTCCATTCAGTCTGCT+TGG | - | chr5.4:55232965-55232984 | None:intergenic | 40.0% | |
| CACAGAAGGTTAGATATGTC+TGG | - | chr5.4:55231399-55231418 | None:intergenic | 40.0% | |
| CACATACTCCAAAGGTTTAG+AGG | - | chr5.4:55229768-55229787 | None:intergenic | 40.0% | |
| CACTTTGAATTGTCCACATC+GGG | + | chr5.4:55229700-55229719 | MS.gene88786:CDS | 40.0% | |
| CCACTTTGAATTGTCCACAT+CGG | + | chr5.4:55229699-55229718 | MS.gene88786:CDS | 40.0% | |
| CGTTCAAACACATACTCCAA+AGG | - | chr5.4:55229776-55229795 | None:intergenic | 40.0% | |
| GAAGGACGAAAGCAAAATTG+TGG | + | chr5.4:55232840-55232859 | MS.gene88786:CDS | 40.0% | |
| GCCAAAGGAAAAATCTGAGA+CGG | + | chr5.4:55232810-55232829 | MS.gene88786:CDS | 40.0% | |
| GGACAATCGTCTTCGTATAT+GGG | + | chr5.4:55231775-55231794 | MS.gene88786:CDS | 40.0% | |
| TAACACCCTTCAAAGCTGAA+TGG | + | chr5.4:55231867-55231886 | MS.gene88786:CDS | 40.0% | |
| TAGTAGACGGATAACAAGCT+TGG | + | chr5.4:55230380-55230399 | MS.gene88786:CDS | 40.0% | |
| TATATTGTAGGCGCGCATTT+GGG | + | chr5.4:55231640-55231659 | MS.gene88786:intron | 40.0% | |
| TCTAGTACTCACTCTCTTGT+TGG | + | chr5.4:55232346-55232365 | MS.gene88786:intron | 40.0% | |
| TCTGTTCATTTGGAAGCCAA+AGG | + | chr5.4:55232795-55232814 | MS.gene88786:CDS | 40.0% | |
| TGAGAAGGTTTACGAGAAAG+TGG | + | chr5.4:55230571-55230590 | MS.gene88786:CDS | 40.0% | |
| TGCATCACCATTCCTATGAT+TGG | - | chr5.4:55231445-55231464 | None:intergenic | 40.0% | |
| TGTTCCAGGCTATTGATCAT+AGG | + | chr5.4:55230257-55230276 | MS.gene88786:intron | 40.0% | |
| TTATAGGTGTGTAAGAAGCC+TGG | + | chr5.4:55228482-55228501 | MS.gene88786:intron | 40.0% | |
| TTGAACCTACACAAAGTGGT+GGG | + | chr5.4:55232398-55232417 | MS.gene88786:intron | 40.0% | |
| ! | ACCGTCTCAGATTTTTCCTT+TGG | - | chr5.4:55232814-55232833 | None:intergenic | 40.0% |
| ! | AGGTTTAGAGGTTTTTCTGC+GGG | - | chr5.4:55229756-55229775 | None:intergenic | 40.0% |
| ! | CAAGGTTTGTTCATGGTCAT+TGG | + | chr5.4:55228383-55228402 | MS.gene88786:intron | 40.0% |
| ! | CATTCAGTCTGCTTGGATTT+TGG | - | chr5.4:55232958-55232977 | None:intergenic | 40.0% |
| ! | CTAACCTTCTGTGTCATTAC+AGG | + | chr5.4:55231406-55231425 | MS.gene88786:intron | 40.0% |
| ! | GAGAGTTTTTGCTCGAACTT+AGG | + | chr5.4:55230108-55230127 | MS.gene88786:intron | 40.0% |
| ! | GTCGACTCACAGATTGAAAT+CGG | - | chr5.4:55228978-55228997 | None:intergenic | 40.0% |
| ! | GTTGAAAAGTGAGTGTTGCT+AGG | + | chr5.4:55232467-55232486 | MS.gene88786:intron | 40.0% |
| ! | TGGTCTGGAATCACACATTT+GGG | - | chr5.4:55230333-55230352 | None:intergenic | 40.0% |
| ! | TTGGTCTGGAATCACACATT+TGG | - | chr5.4:55230334-55230353 | None:intergenic | 40.0% |
| !! | AGTTGTACTGATTTGGAGAC+TGG | + | chr5.4:55230800-55230819 | MS.gene88786:CDS | 40.0% |
| !! | CAGCTTTGAAGGGTGTTAAA+TGG | - | chr5.4:55231865-55231884 | None:intergenic | 40.0% |
| !! | TTAGAGTCACTTGCTGTTGT+TGG | + | chr5.4:55231998-55232017 | MS.gene88786:CDS | 40.0% |
| AAGCTTATTCACCGGACTGA+TGG | - | chr5.4:55232131-55232150 | None:intergenic | 45.0% | |
| AATGGTTCCATCTGAGGATG+CGG | - | chr5.4:55230780-55230799 | None:intergenic | 45.0% | |
| ACGTCTACATCCGTGTTTAC+AGG | - | chr5.4:55228859-55228878 | None:intergenic | 45.0% | |
| ACTATGCACAATTTCTCGGC+TGG | - | chr5.4:55231828-55231847 | None:intergenic | 45.0% | |
| ACTTAGGCTTACCGTAGGAA+TGG | - | chr5.4:55229813-55229832 | None:intergenic | 45.0% | |
| AGAAAGGACAACTTGGAGTC+TGG | + | chr5.4:55230543-55230562 | MS.gene88786:intron | 45.0% | |
| AGATACAAGTACAGGGCAGT+TGG | + | chr5.4:55232075-55232094 | MS.gene88786:CDS | 45.0% | |
| ATGCGGTCCAATCATAGGAA+TGG | + | chr5.4:55231435-55231454 | MS.gene88786:CDS | 45.0% | |
| CAAAGCTGAATGGGATCCAA+AGG | + | chr5.4:55231877-55231896 | MS.gene88786:CDS | 45.0% | |
| CCACAAGTCAAAAGGATGTC+TGG | - | chr5.4:55231525-55231544 | None:intergenic | 45.0% | |
| CCATGTTTGGGAAGGAATTG+AGG | + | chr5.4:55228740-55228759 | MS.gene88786:intron | 45.0% | |
| CCGATGTGGACAATTCAAAG+TGG | - | chr5.4:55229702-55229721 | None:intergenic | 45.0% | |
| CCTCAATTCCTTCCCAAACA+TGG | - | chr5.4:55228743-55228762 | None:intergenic | 45.0% | |
| CGTGGATGAAGCTTATTCAC+CGG | - | chr5.4:55232139-55232158 | None:intergenic | 45.0% | |
| CTATATTGTAGGCGCGCATT+TGG | + | chr5.4:55231639-55231658 | MS.gene88786:intron | 45.0% | |
| CTATGCACAATTTCTCGGCT+GGG | - | chr5.4:55231827-55231846 | None:intergenic | 45.0% | |
| CTGAGAAGAAACGTGGTAAG+AGG | + | chr5.4:55232875-55232894 | MS.gene88786:CDS | 45.0% | |
| CTGGTTGCATTGGATTGCAA+TGG | - | chr5.4:55231506-55231525 | None:intergenic | 45.0% | |
| GAAAGGACAACTTGGAGTCT+GGG | + | chr5.4:55230544-55230563 | MS.gene88786:intron | 45.0% | |
| GAACATCACAACCATCAGTC+CGG | + | chr5.4:55232117-55232136 | MS.gene88786:CDS | 45.0% | |
| GAATGACTTAGGCTTACCGT+AGG | - | chr5.4:55229818-55229837 | None:intergenic | 45.0% | |
| GACATGCGGAGACAGTAAAA+CGG | - | chr5.4:55231140-55231159 | None:intergenic | 45.0% | |
| GACTGATGGTTGTGATGTTC+GGG | - | chr5.4:55232117-55232136 | None:intergenic | 45.0% | |
| GATATGCGTCACTTAGAAGC+TGG | + | chr5.4:55231662-55231681 | MS.gene88786:CDS | 45.0% | |
| GCTAAGACATGCCATTCCTA+CGG | + | chr5.4:55229799-55229818 | MS.gene88786:CDS | 45.0% | |
| GGAAAAGCTGAGAAGAAACG+TGG | + | chr5.4:55232868-55232887 | MS.gene88786:CDS | 45.0% | |
| GGACTGATGGTTGTGATGTT+CGG | - | chr5.4:55232118-55232137 | None:intergenic | 45.0% | |
| GGATGTTATTCTTCGTAGGG+TGG | - | chr5.4:55230410-55230429 | None:intergenic | 45.0% | |
| GGGGAAAAAGCCTGTAAACA+CGG | + | chr5.4:55228846-55228865 | MS.gene88786:intron | 45.0% | |
| GTCTCCTATGATCAATAGCC+TGG | - | chr5.4:55230264-55230283 | None:intergenic | 45.0% | |
| GTGATGATATCCTGGCAACT+GGG | + | chr5.4:55232158-55232177 | MS.gene88786:CDS | 45.0% | |
| TAACAACACGCTTGTGCTCA+AGG | - | chr5.4:55231703-55231722 | None:intergenic | 45.0% | |
| TAACCTTATCTCCCGACAAC+AGG | - | chr5.4:55230431-55230450 | None:intergenic | 45.0% | |
| TAAGAAGCCTGGTCATGAAG+CGG | + | chr5.4:55228493-55228512 | MS.gene88786:CDS | 45.0% | |
| TAGGAATGGCATGTCTTAGC+TGG | - | chr5.4:55229799-55229818 | None:intergenic | 45.0% | |
| TATGTCCCACCACTTTGTGT+AGG | - | chr5.4:55232406-55232425 | None:intergenic | 45.0% | |
| TCATCCACGTGATGATATCC+TGG | + | chr5.4:55232150-55232169 | MS.gene88786:CDS | 45.0% | |
| TGAACCTGAATCCTGATGGA+TGG | + | chr5.4:55230840-55230859 | MS.gene88786:CDS | 45.0% | |
| TGATAACAGCGCAACTCACT+TGG | - | chr5.4:55230353-55230372 | None:intergenic | 45.0% | |
| TGTAAACACGGATGTAGACG+TGG | + | chr5.4:55228858-55228877 | MS.gene88786:intron | 45.0% | |
| TTAAAACCCGCTTCATGACC+AGG | - | chr5.4:55228503-55228522 | None:intergenic | 45.0% | |
| ! | CCATCAGGATTCAGGTTCAT+CGG | - | chr5.4:55230839-55230858 | None:intergenic | 45.0% |
| ! | GGTTTAGAGGTTTTTCTGCG+GGG | - | chr5.4:55229755-55229774 | None:intergenic | 45.0% |
| ! | GTGAATCTAGGATAGTGTGG+CGG | - | chr5.4:55229148-55229167 | None:intergenic | 45.0% |
| ! | TGGATCCCATTCAGCTTTGA+AGG | - | chr5.4:55231876-55231895 | None:intergenic | 45.0% |
| !! | GGATCCCATTCAGCTTTGAA+GGG | - | chr5.4:55231875-55231894 | None:intergenic | 45.0% |
| !! | GGTCATGAAGCGGGTTTTAA+GGG | + | chr5.4:55228503-55228522 | MS.gene88786:CDS | 45.0% |
| !! | TACTGAGCATGGTGTTGTTC+CGG | + | chr5.4:55229727-55229746 | MS.gene88786:CDS | 45.0% |
| !! | TGGAGTCTGGGATTTTGAGA+AGG | + | chr5.4:55230556-55230575 | MS.gene88786:CDS | 45.0% |
| !! | TGGTCATGAAGCGGGTTTTA+AGG | + | chr5.4:55228502-55228521 | MS.gene88786:CDS | 45.0% |
| !!! | CCAGACATCCTTTTGACTTG+TGG | + | chr5.4:55231522-55231541 | MS.gene88786:CDS | 45.0% |
| !!! | GGATTTTGGCTTCTTGAGCT+TGG | - | chr5.4:55232944-55232963 | None:intergenic | 45.0% |
| AAGAAGCCTGGTCATGAAGC+GGG | + | chr5.4:55228494-55228513 | MS.gene88786:CDS | 50.0% | |
| ATTGTCTCGCTGCTCGACAA+AGG | + | chr5.4:55232981-55233000 | MS.gene88786:CDS | 50.0% | |
| CAATCTGTGAGTCGACTGTG+TGG | + | chr5.4:55228982-55229001 | MS.gene88786:intron | 50.0% | |
| CATCCTGTTGTCGGGAGATA+AGG | + | chr5.4:55230425-55230444 | MS.gene88786:CDS | 50.0% | |
| CATGCCATCCATCAGGATTC+AGG | - | chr5.4:55230847-55230866 | None:intergenic | 50.0% | |
| CCGATGAACCTGAATCCTGA+TGG | + | chr5.4:55230836-55230855 | MS.gene88786:CDS | 50.0% | |
| CGACCCTGTAATGACACAGA+AGG | - | chr5.4:55231413-55231432 | None:intergenic | 50.0% | |
| CGTGATGATATCCTGGCAAC+TGG | + | chr5.4:55232157-55232176 | MS.gene88786:CDS | 50.0% | |
| CTTGTGCTCAAGGCTACAGA+GGG | - | chr5.4:55231693-55231712 | None:intergenic | 50.0% | |
| GTCATTACAGGGTCGACATG+CGG | + | chr5.4:55231418-55231437 | MS.gene88786:intron | 50.0% | |
| GTCTATTCCGCATCCTCAGA+TGG | + | chr5.4:55230770-55230789 | MS.gene88786:CDS | 50.0% | |
| GTTGCCAGGATATCATCACG+TGG | - | chr5.4:55232157-55232176 | None:intergenic | 50.0% | |
| TCGACATGCGGTCCAATCAT+AGG | + | chr5.4:55231430-55231449 | MS.gene88786:CDS | 50.0% | |
| TTTACTAGGGGCCAAACACC+TGG | + | chr5.4:55231011-55231030 | MS.gene88786:intron | 50.0% | |
| ! | AGGATTCAGGTTCATCGGAG+AGG | - | chr5.4:55230834-55230853 | None:intergenic | 50.0% |
| ! | GGAAAAATCTGAGACGGTCG+AGG | + | chr5.4:55232816-55232835 | MS.gene88786:CDS | 50.0% |
| ! | TGAGAAAGGTCTTGTGCTCG+TGG | + | chr5.4:55231063-55231082 | MS.gene88786:CDS | 50.0% |
| !! | GCAGTTGGTAGCAGAAGTCA+TGG | + | chr5.4:55232090-55232109 | MS.gene88786:CDS | 50.0% |
| ACAGCGCAACTCACTTGGTC+TGG | - | chr5.4:55230348-55230367 | None:intergenic | 55.0% | |
| ACCTAGAACTCCCAGTTGCC+AGG | - | chr5.4:55232171-55232190 | None:intergenic | 55.0% | |
| ACGGATGTAGACGTGGACAC+CGG | + | chr5.4:55228865-55228884 | MS.gene88786:intron | 55.0% | |
| CATCGGGTCACTACTGAGCA+TGG | + | chr5.4:55229716-55229735 | MS.gene88786:CDS | 55.0% | |
| GCTTGTGCTCAAGGCTACAG+AGG | - | chr5.4:55231694-55231713 | None:intergenic | 55.0% | |
| GTGCTCGTGGCCGATAACTT+TGG | + | chr5.4:55231076-55231095 | MS.gene88786:CDS | 55.0% | |
| TCCTGGCAACTGGGAGTTCT+AGG | + | chr5.4:55232167-55232186 | MS.gene88786:CDS | 55.0% | |
| TGCTCAGTAGTGACCCGATG+TGG | - | chr5.4:55229716-55229735 | None:intergenic | 55.0% | |
| ! | ATCTGAGACGGTCGAGGAGA+AGG | + | chr5.4:55232822-55232841 | MS.gene88786:CDS | 55.0% |
| TGACCTTGAGGAGACTCGCG+CGG | - | chr5.4:55230934-55230953 | None:intergenic | 60.0% | |
| ! | GAGGTTTTTCTGCGGGGTGC+CGG | - | chr5.4:55229749-55229768 | None:intergenic | 60.0% |
| TGACCGCGCGAGTCTCCTCA+AGG | + | chr5.4:55230928-55230947 | MS.gene88786:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 55228282 | 55233014 | 55228282 | ID=MS.gene88786 |
| chr5.4 | mRNA | 55228282 | 55233014 | 55228282 | ID=MS.gene88786.t1;Parent=MS.gene88786 |
| chr5.4 | exon | 55228282 | 55228386 | 55228282 | ID=MS.gene88786.t1.exon1;Parent=MS.gene88786.t1 |
| chr5.4 | CDS | 55228282 | 55228386 | 55228282 | ID=cds.MS.gene88786.t1;Parent=MS.gene88786.t1 |
| chr5.4 | exon | 55228488 | 55228578 | 55228488 | ID=MS.gene88786.t1.exon2;Parent=MS.gene88786.t1 |
| chr5.4 | CDS | 55228488 | 55228578 | 55228488 | ID=cds.MS.gene88786.t1;Parent=MS.gene88786.t1 |
| chr5.4 | exon | 55229693 | 55229820 | 55229693 | ID=MS.gene88786.t1.exon3;Parent=MS.gene88786.t1 |
| chr5.4 | CDS | 55229693 | 55229820 | 55229693 | ID=cds.MS.gene88786.t1;Parent=MS.gene88786.t1 |
| chr5.4 | exon | 55230324 | 55230446 | 55230324 | ID=MS.gene88786.t1.exon4;Parent=MS.gene88786.t1 |
| chr5.4 | CDS | 55230324 | 55230446 | 55230324 | ID=cds.MS.gene88786.t1;Parent=MS.gene88786.t1 |
| chr5.4 | exon | 55230545 | 55230633 | 55230545 | ID=MS.gene88786.t1.exon5;Parent=MS.gene88786.t1 |
| chr5.4 | CDS | 55230545 | 55230633 | 55230545 | ID=cds.MS.gene88786.t1;Parent=MS.gene88786.t1 |
| chr5.4 | exon | 55230745 | 55230865 | 55230745 | ID=MS.gene88786.t1.exon6;Parent=MS.gene88786.t1 |
| chr5.4 | CDS | 55230745 | 55230865 | 55230745 | ID=cds.MS.gene88786.t1;Parent=MS.gene88786.t1 |
| chr5.4 | exon | 55231019 | 55231110 | 55231019 | ID=MS.gene88786.t1.exon7;Parent=MS.gene88786.t1 |
| chr5.4 | CDS | 55231019 | 55231110 | 55231019 | ID=cds.MS.gene88786.t1;Parent=MS.gene88786.t1 |
| chr5.4 | exon | 55231428 | 55231557 | 55231428 | ID=MS.gene88786.t1.exon8;Parent=MS.gene88786.t1 |
| chr5.4 | CDS | 55231428 | 55231557 | 55231428 | ID=cds.MS.gene88786.t1;Parent=MS.gene88786.t1 |
| chr5.4 | exon | 55231650 | 55231898 | 55231650 | ID=MS.gene88786.t1.exon9;Parent=MS.gene88786.t1 |
| chr5.4 | CDS | 55231650 | 55231898 | 55231650 | ID=cds.MS.gene88786.t1;Parent=MS.gene88786.t1 |
| chr5.4 | exon | 55231992 | 55232188 | 55231992 | ID=MS.gene88786.t1.exon10;Parent=MS.gene88786.t1 |
| chr5.4 | CDS | 55231992 | 55232188 | 55231992 | ID=cds.MS.gene88786.t1;Parent=MS.gene88786.t1 |
| chr5.4 | exon | 55232792 | 55233014 | 55232792 | ID=MS.gene88786.t1.exon11;Parent=MS.gene88786.t1 |
| chr5.4 | CDS | 55232792 | 55233014 | 55232792 | ID=cds.MS.gene88786.t1;Parent=MS.gene88786.t1 |
| Gene Sequence |
| Protein sequence |
