Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89578.t1 | KEH42495.1 | 99.5 | 186 | 1 | 0 | 22 | 207 | 492 | 677 | 2.70E-65 | 258.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89578.t1 | Q0WTY4 | 76.8 | 194 | 35 | 1 | 22 | 205 | 27 | 220 | 2.3e-49 | 196.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89578.t1 | A0A072VWM9 | 99.5 | 186 | 1 | 0 | 22 | 207 | 492 | 677 | 2.0e-65 | 258.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene89578 | 0.801767 | 7.71E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene89578 | 0.814715 | 1.34E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89578.t1 | MTR_1g069715 | 99.462 | 186 | 1 | 0 | 22 | 207 | 492 | 677 | 1.42e-125 | 369 |
| MS.gene89578.t1 | MTR_7g097170 | 81.720 | 186 | 34 | 0 | 22 | 207 | 27 | 212 | 3.85e-97 | 281 |
| MS.gene89578.t1 | MTR_2g047875 | 72.165 | 194 | 50 | 1 | 16 | 205 | 21 | 214 | 5.76e-95 | 276 |
| MS.gene89578.t1 | MTR_8g019700 | 47.682 | 151 | 79 | 0 | 23 | 173 | 29 | 179 | 4.15e-33 | 119 |
| MS.gene89578.t1 | MTR_2g041190 | 41.969 | 193 | 102 | 2 | 23 | 205 | 29 | 221 | 4.46e-33 | 118 |
| MS.gene89578.t1 | MTR_4g057565 | 30.303 | 165 | 115 | 0 | 12 | 176 | 21 | 185 | 2.42e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89578.t1 | AT1G03950 | 71.635 | 208 | 49 | 1 | 8 | 205 | 3 | 210 | 2.10e-104 | 300 |
| MS.gene89578.t1 | AT5G44560 | 75.773 | 194 | 37 | 1 | 22 | 205 | 7 | 200 | 6.25e-102 | 293 |
| MS.gene89578.t1 | AT5G44560 | 75.773 | 194 | 37 | 1 | 22 | 205 | 27 | 220 | 1.09e-101 | 293 |
| MS.gene89578.t1 | AT5G44560 | 82.895 | 152 | 26 | 0 | 22 | 173 | 27 | 178 | 5.71e-89 | 259 |
| MS.gene89578.t1 | AT5G44560 | 77.419 | 124 | 28 | 0 | 22 | 145 | 27 | 150 | 6.57e-65 | 197 |
| MS.gene89578.t1 | AT2G06530 | 42.784 | 194 | 100 | 2 | 23 | 205 | 9 | 202 | 4.77e-35 | 123 |
| MS.gene89578.t1 | AT2G06530 | 42.784 | 194 | 100 | 2 | 23 | 205 | 30 | 223 | 6.66e-35 | 123 |
| MS.gene89578.t1 | AT5G22950 | 26.794 | 209 | 139 | 2 | 12 | 206 | 21 | 229 | 2.64e-12 | 63.9 |
Find 40 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAACTCTTGAATAATTT+TGG | 0.113072 | 1.1:-51636747 | None:intergenic |
| CCATTTGTGCTGATTGTTTC+TGG | 0.121554 | 1.1:-51636766 | None:intergenic |
| CTTCTCGATGTCATCAATTT+CGG | 0.344181 | 1.1:-51638799 | None:intergenic |
| GGCAATGGAAGCTATGAATA+AGG | 0.394968 | 1.1:+51636187 | MS.gene89578:CDS |
| TTTGAGCTCGACTACCTTGA+AGG | 0.406647 | 1.1:-51635987 | None:intergenic |
| CAACAAATTGCTAACCTTCA+AGG | 0.417491 | 1.1:+51635973 | MS.gene89578:CDS |
| CGGCGTGGATGTTGCTTCAC+AGG | 0.421005 | 1.1:+51638246 | MS.gene89578:CDS |
| CCAGGCAGTTGGTTAGGCTT+AGG | 0.424613 | 1.1:+51635950 | MS.gene89578:CDS |
| TGATGACATCGAGAAGCGTT+TGG | 0.440202 | 1.1:+51638806 | MS.gene89578:CDS |
| CAGAGAGAGTAAACGTGAAA+TGG | 0.451306 | 1.1:+51635243 | MS.gene89578:CDS |
| CCAGAAACAATCAGCACAAA+TGG | 0.451902 | 1.1:+51636766 | MS.gene89578:CDS |
| CGGCATGAAAGGTGCTAGTA+AGG | 0.457818 | 1.1:+51636166 | MS.gene89578:CDS |
| TACATTACCTCTAGTGGCAT+TGG | 0.462651 | 1.1:-51635266 | None:intergenic |
| TCTATTTCTGCCGGCATGAA+AGG | 0.465107 | 1.1:+51636155 | MS.gene89578:CDS |
| TGGCAGGTACTCGATGAAAT+CGG | 0.471009 | 1.1:+51638226 | MS.gene89578:intron |
| GACAGAAGATCTGACAAATC+AGG | 0.492127 | 1.1:+51636942 | MS.gene89578:CDS |
| TATTAGCCAGGCAGTTGGTT+AGG | 0.498748 | 1.1:+51635944 | MS.gene89578:CDS |
| GATAAAGAAAACTGCTAAGA+CGG | 0.504385 | 1.1:+51635557 | MS.gene89578:CDS |
| GCACAGTCTTCTATTTCTGC+CGG | 0.512916 | 1.1:+51636146 | MS.gene89578:CDS |
| ATTAATTAGATGTATTCCAC+AGG | 0.522510 | 1.1:+51635393 | MS.gene89578:intron |
| AACTGCTAAGACGGGAAATG+AGG | 0.530892 | 1.1:+51635566 | MS.gene89578:CDS |
| CAGTTATCAGCAGCTCCAAA+AGG | 0.534197 | 1.1:+51638375 | MS.gene89578:intron |
| ATAAAGAAAACTGCTAAGAC+GGG | 0.538319 | 1.1:+51635558 | MS.gene89578:CDS |
| AGTAATTACATTACCTCTAG+TGG | 0.549933 | 1.1:-51635272 | None:intergenic |
| AGATGCCATCGATGATGTCT+TGG | 0.557065 | 1.1:+51636897 | MS.gene89578:CDS |
| CCCCTTCTCTATCCATGCAG+AGG | 0.568734 | 1.1:+51635216 | None:intergenic |
| TAAAATATTAGCCAGGCAGT+TGG | 0.568904 | 1.1:+51635939 | MS.gene89578:CDS |
| TGACATCGAGAAGCGTTTGG+CGG | 0.572824 | 1.1:+51638809 | MS.gene89578:CDS |
| AGAATACTGAAAATGTCAGC+AGG | 0.574074 | 1.1:+51638412 | MS.gene89578:CDS |
| CTGCGACTAAAATATTAGCC+AGG | 0.584824 | 1.1:+51635932 | MS.gene89578:CDS |
| GAAAGGTGCTAGTAAGGCAA+TGG | 0.588411 | 1.1:+51636172 | MS.gene89578:CDS |
| CTTACTAGCACCTTTCATGC+CGG | 0.602682 | 1.1:-51636165 | None:intergenic |
| CCTAAGCCTAACCAACTGCC+TGG | 0.602720 | 1.1:-51635950 | None:intergenic |
| GGTAGTCGAGCTCAAATGAG+AGG | 0.622813 | 1.1:+51635994 | MS.gene89578:CDS |
| TCTCTCTGAGAACCTCTGCA+TGG | 0.622874 | 1.1:-51635228 | None:intergenic |
| ATTATCCAAGACATCATCGA+TGG | 0.636937 | 1.1:-51636902 | None:intergenic |
| GAAATGGCCAATGCCACTAG+AGG | 0.655907 | 1.1:+51635259 | MS.gene89578:CDS |
| TGATGTCTTGGATAATGATG+AGG | 0.669181 | 1.1:+51636909 | MS.gene89578:CDS |
| AGGCATAGCAACTCACACAC+AGG | 0.671175 | 1.1:+51636014 | MS.gene89578:CDS |
| GGTACTCGATGAAATCGGCG+TGG | 0.702596 | 1.1:+51638231 | MS.gene89578:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTACAAAAAACAATTGA+TGG | + | chr1.1:51638186-51638205 | MS.gene89578:intron | 15.0% |
| !! | CTAATTAATTAATACAGTAA+GGG | - | chr1.1:51635382-51635401 | None:intergenic | 15.0% |
| !! | TCTAATTAATTAATACAGTA+AGG | - | chr1.1:51635383-51635402 | None:intergenic | 15.0% |
| !! | TTAAAGCTAAGATTTAAATT+TGG | - | chr1.1:51637187-51637206 | None:intergenic | 15.0% |
| !! | TTTAATTGGATGTTTATTAA+TGG | + | chr1.1:51636399-51636418 | MS.gene89578:intron | 15.0% |
| !!! | AAATACTTTAAATTTTTGGT+TGG | + | chr1.1:51638050-51638069 | MS.gene89578:intron | 15.0% |
| !!! | TATTAGCAAATTACAATTTT+AGG | - | chr1.1:51637805-51637824 | None:intergenic | 15.0% |
| !!! | TGGAAATTTTATTTACTTTT+TGG | + | chr1.1:51638206-51638225 | MS.gene89578:intron | 15.0% |
| !! | GAAATCAATAGAAAATTACA+TGG | + | chr1.1:51637283-51637302 | MS.gene89578:intron | 20.0% |
| !! | GTTTGATATCAAAATAGTTA+AGG | - | chr1.1:51637978-51637997 | None:intergenic | 20.0% |
| !! | TAAAAGGAAATTAATGCATT+GGG | + | chr1.1:51636549-51636568 | MS.gene89578:intron | 20.0% |
| !! | TGGTTAATTAATTTCTTACT+TGG | + | chr1.1:51637079-51637098 | MS.gene89578:intron | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | + | chr1.1:51635755-51635774 | MS.gene89578:intron | 20.0% |
| !!! | AATATACTTCTAAAAACAAG+TGG | + | chr1.1:51637821-51637840 | MS.gene89578:intron | 20.0% |
| !!! | AATTTTATTTACTTTTTGGC+AGG | + | chr1.1:51638210-51638229 | MS.gene89578:intron | 20.0% |
| !!! | ACTTGATTTGCTTAAAAATT+AGG | - | chr1.1:51638021-51638040 | None:intergenic | 20.0% |
| !!! | AGTTGGTTTTATTTTAGTAT+TGG | + | chr1.1:51636277-51636296 | MS.gene89578:intron | 20.0% |
| !!! | ATATACTTCTAAAAACAAGT+GGG | + | chr1.1:51637822-51637841 | MS.gene89578:intron | 20.0% |
| !!! | GAGATAAAGTTGATATTTAT+AGG | + | chr1.1:51636457-51636476 | MS.gene89578:intron | 20.0% |
| !!! | TAATTTTGGTACTTTGTTAT+CGG | + | chr1.1:51636068-51636087 | MS.gene89578:intron | 20.0% |
| !!! | TGTTTGTTCTATATGATTTT+AGG | + | chr1.1:51637416-51637435 | MS.gene89578:intron | 20.0% |
| !!! | TTCTCATGTTTTTTATGATT+AGG | + | chr1.1:51635515-51635534 | MS.gene89578:intron | 20.0% |
| ! | AAGAAATTATTTGCAGCAAA+TGG | + | chr1.1:51636709-51636728 | MS.gene89578:intron | 25.0% |
| ! | AAGGAAATACTATGGTTTAT+AGG | - | chr1.1:51637309-51637328 | None:intergenic | 25.0% |
| ! | ACATGAGAAACTTAAACAAT+AGG | - | chr1.1:51635504-51635523 | None:intergenic | 25.0% |
| ! | AGTCTGTTTAGAAAAGTTTA+CGG | - | chr1.1:51635799-51635818 | None:intergenic | 25.0% |
| ! | ATTAATTAGATGTATTCCAC+AGG | + | chr1.1:51635393-51635412 | MS.gene89578:intron | 25.0% |
| ! | CTAAAAGGAAATTAATGCAT+TGG | + | chr1.1:51636548-51636567 | MS.gene89578:intron | 25.0% |
| ! | CTAAACTTCTTCAAAAACTA+AGG | - | chr1.1:51638483-51638502 | None:intergenic | 25.0% |
| ! | TAAGTTGTGAAGAATTTACT+TGG | + | chr1.1:51638646-51638665 | MS.gene89578:intron | 25.0% |
| ! | TACAATAGCAAGATGATATT+TGG | + | chr1.1:51636308-51636327 | MS.gene89578:intron | 25.0% |
| ! | TGATATTTATAGGTTATTGC+CGG | + | chr1.1:51636467-51636486 | MS.gene89578:intron | 25.0% |
| ! | TTCTTACTTGGTTATTTACA+TGG | + | chr1.1:51637091-51637110 | MS.gene89578:intron | 25.0% |
| ! | TTGATTATATTTGATGTCCA+TGG | + | chr1.1:51636231-51636250 | MS.gene89578:intron | 25.0% |
| ! | TTGGATGTTTATTAATGGAA+TGG | + | chr1.1:51636404-51636423 | MS.gene89578:intron | 25.0% |
| ! | TTTCCTTCTTAAGAGTTATA+AGG | + | chr1.1:51637322-51637341 | MS.gene89578:intron | 25.0% |
| ! | TTTCTTTAAATTCAGCACAA+CGG | - | chr1.1:51636695-51636714 | None:intergenic | 25.0% |
| !! | ACATAGAAGCAGTAATTTTT+GGG | - | chr1.1:51637551-51637570 | None:intergenic | 25.0% |
| !! | ATAGAAAGTAAGAGTATAGA+TGG | + | chr1.1:51638118-51638137 | MS.gene89578:intron | 25.0% |
| !! | TACATAGAAGCAGTAATTTT+TGG | - | chr1.1:51637552-51637571 | None:intergenic | 25.0% |
| !! | TAGAAAGTAAGAGTATAGAT+GGG | + | chr1.1:51638119-51638138 | MS.gene89578:intron | 25.0% |
| !!! | AAAATGAAGCTTTTGTTTTG+CGG | + | chr1.1:51636354-51636373 | MS.gene89578:intron | 25.0% |
| !!! | AACTTTCTTTAAGACATAGA+GGG | - | chr1.1:51638571-51638590 | None:intergenic | 25.0% |
| !!! | AATTTTGGTACTTTGTTATC+GGG | + | chr1.1:51636069-51636088 | MS.gene89578:intron | 25.0% |
| !!! | ACAAATTGGTGCATTTTAAT+TGG | + | chr1.1:51636385-51636404 | MS.gene89578:intron | 25.0% |
| !!! | ACACGATTTTTGTTTTATCT+AGG | + | chr1.1:51637928-51637947 | MS.gene89578:intron | 25.0% |
| !!! | ATTTTTTCTAAAGAACACGT+GGG | + | chr1.1:51637689-51637708 | MS.gene89578:intron | 25.0% |
| !!! | TATTTTTTCTAAAGAACACG+TGG | + | chr1.1:51637688-51637707 | MS.gene89578:intron | 25.0% |
| !!! | TTTGTTTTGATACTTCCTTT+TGG | - | chr1.1:51638393-51638412 | None:intergenic | 25.0% |
| AAGTTGCACATATGATTCTA+CGG | + | chr1.1:51638145-51638164 | MS.gene89578:intron | 30.0% | |
| ACAGGCATAGAAAAAGAAAT+TGG | + | chr1.1:51635411-51635430 | MS.gene89578:CDS | 30.0% | |
| ACTATTAATTCCTAAGGGAT+CGG | - | chr1.1:51637148-51637167 | None:intergenic | 30.0% | |
| ACTTCTTCAAAAACTAAGGA+TGG | - | chr1.1:51638479-51638498 | None:intergenic | 30.0% | |
| AGTAATTACATTACCTCTAG+TGG | - | chr1.1:51635275-51635294 | None:intergenic | 30.0% | |
| ATAAAGAAAACTGCTAAGAC+GGG | + | chr1.1:51635558-51635577 | MS.gene89578:CDS | 30.0% | |
| ATACAGTAAGGGATTATAAG+TGG | - | chr1.1:51635371-51635390 | None:intergenic | 30.0% | |
| ATGTATGGTAAACATAGATG+TGG | - | chr1.1:51638696-51638715 | None:intergenic | 30.0% | |
| CAACCTTATAACTCTTAAGA+AGG | - | chr1.1:51637328-51637347 | None:intergenic | 30.0% | |
| CATCACTACAGAGTAATTTA+TGG | - | chr1.1:51636651-51636670 | None:intergenic | 30.0% | |
| CTAGCACTATTAATTCCTAA+GGG | - | chr1.1:51637153-51637172 | None:intergenic | 30.0% | |
| CTCTTAAGAAGGAAATACTA+TGG | - | chr1.1:51637317-51637336 | None:intergenic | 30.0% | |
| GAAAATCTCAGCTATACATT+GGG | + | chr1.1:51637054-51637073 | MS.gene89578:intron | 30.0% | |
| GATAAAGAAAACTGCTAAGA+CGG | + | chr1.1:51635557-51635576 | MS.gene89578:CDS | 30.0% | |
| GCTAATAGCTAAATTGACAA+GGG | + | chr1.1:51638072-51638091 | MS.gene89578:intron | 30.0% | |
| GGAAACTTTGCAATCTTAAA+AGG | - | chr1.1:51636493-51636512 | None:intergenic | 30.0% | |
| GTACATTAGCAAATGTATCT+AGG | + | chr1.1:51637846-51637865 | MS.gene89578:intron | 30.0% | |
| GTTGTATCATGCATAAGTAT+TGG | + | chr1.1:51637471-51637490 | MS.gene89578:intron | 30.0% | |
| TACCACAAACATAAAGACAT+AGG | + | chr1.1:51637524-51637543 | MS.gene89578:intron | 30.0% | |
| TAGTAATCCATAATCCAGTT+AGG | + | chr1.1:51637215-51637234 | MS.gene89578:intron | 30.0% | |
| TATCTTGTTCCTAGTGATTT+AGG | + | chr1.1:51635607-51635626 | MS.gene89578:intron | 30.0% | |
| TATTAGCTAGTTACACCTTT+AGG | - | chr1.1:51637668-51637687 | None:intergenic | 30.0% | |
| TCACAAGAAATTCACATGTA+TGG | - | chr1.1:51638711-51638730 | None:intergenic | 30.0% | |
| TGAAAATCTCAGCTATACAT+TGG | + | chr1.1:51637053-51637072 | MS.gene89578:intron | 30.0% | |
| ! | AATTTCTTTTTCTATGCCTG+TGG | - | chr1.1:51635412-51635431 | None:intergenic | 30.0% |
| ! | CAATTTTGTGGTATTCCTAA+AGG | + | chr1.1:51637650-51637669 | MS.gene89578:intron | 30.0% |
| ! | CTGGAACTCTTGAATAATTT+TGG | - | chr1.1:51636750-51636769 | None:intergenic | 30.0% |
| ! | GAGATTGTTCTTTTGCTAAA+AGG | + | chr1.1:51636533-51636552 | MS.gene89578:intron | 30.0% |
| !! | ACTTTCTTTAAGACATAGAG+GGG | - | chr1.1:51638570-51638589 | None:intergenic | 30.0% |
| !! | ATTTTGGTACTTTGTTATCG+GGG | + | chr1.1:51636070-51636089 | MS.gene89578:intron | 30.0% |
| !! | GAACTTTCTTTAAGACATAG+AGG | - | chr1.1:51638572-51638591 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGTCATCT+TGG | + | chr1.1:51635720-51635739 | MS.gene89578:intron | 30.0% |
| !!! | ATAATTTTGGCTTGCTTTGT+AGG | - | chr1.1:51636737-51636756 | None:intergenic | 30.0% |
| !!! | CTAGCTTACTTGTTTTAAAG+TGG | - | chr1.1:51637592-51637611 | None:intergenic | 30.0% |
| !!! | TATAGTCCCACTTGTTTTTT+TGG | + | chr1.1:51637737-51637756 | MS.gene89578:intron | 30.0% |
| !!! | TTCTGTTTTATTTACACTCC+TGG | + | chr1.1:51638352-51638371 | MS.gene89578:intron | 30.0% |
| AACTAAGGATGGAGGAAAAA+TGG | - | chr1.1:51638468-51638487 | None:intergenic | 35.0% | |
| ACGCTGCATAAATTGACATT+AGG | + | chr1.1:51636623-51636642 | MS.gene89578:intron | 35.0% | |
| ACTTTGCAATCTTAAAAGGC+CGG | - | chr1.1:51636489-51636508 | None:intergenic | 35.0% | |
| AGAATACTGAAAATGTCAGC+AGG | + | chr1.1:51638412-51638431 | MS.gene89578:CDS | 35.0% | |
| AGGAAATTAATGCATTGGGA+AGG | + | chr1.1:51636553-51636572 | MS.gene89578:intron | 35.0% | |
| ATCTGACAAATCAGGTACTA+AGG | + | chr1.1:51636950-51636969 | MS.gene89578:intron | 35.0% | |
| ATGTCAATTTATGCAGCGTT+AGG | - | chr1.1:51636622-51636641 | None:intergenic | 35.0% | |
| ATTATCCAAGACATCATCGA+TGG | - | chr1.1:51636905-51636924 | None:intergenic | 35.0% | |
| CAACAAATTGCTAACCTTCA+AGG | + | chr1.1:51635973-51635992 | MS.gene89578:CDS | 35.0% | |
| CCTAGCACTATTAATTCCTA+AGG | - | chr1.1:51637154-51637173 | None:intergenic | 35.0% | |
| CCTATGCTTATTATTCATGC+AGG | + | chr1.1:51636115-51636134 | MS.gene89578:intron | 35.0% | |
| CCTGCATGAATAATAAGCAT+AGG | - | chr1.1:51636118-51636137 | None:intergenic | 35.0% | |
| CCTTAGGAATTAATAGTGCT+AGG | + | chr1.1:51637151-51637170 | MS.gene89578:intron | 35.0% | |
| CTTCTCGATGTCATCAATTT+CGG | - | chr1.1:51638802-51638821 | None:intergenic | 35.0% | |
| GACAGTAAGAAAATGCAGTA+TGG | - | chr1.1:51638444-51638463 | None:intergenic | 35.0% | |
| GCAATGGCATCAAATTTCAA+AGG | - | chr1.1:51638775-51638794 | None:intergenic | 35.0% | |
| GGCTAATAGCTAAATTGACA+AGG | + | chr1.1:51638071-51638090 | MS.gene89578:intron | 35.0% | |
| GGTAAACATAGATGTGGATT+CGG | - | chr1.1:51638690-51638709 | None:intergenic | 35.0% | |
| GTACCAAAATTAGCATCAGA+TGG | - | chr1.1:51636060-51636079 | None:intergenic | 35.0% | |
| GTCCTATGTCTTTATGTTTG+TGG | - | chr1.1:51637529-51637548 | None:intergenic | 35.0% | |
| TAAAATATTAGCCAGGCAGT+TGG | + | chr1.1:51635939-51635958 | MS.gene89578:CDS | 35.0% | |
| TAAAGTGGCAGTACATTACT+TGG | - | chr1.1:51637577-51637596 | None:intergenic | 35.0% | |
| TAAATTCAGCACAACGGAAA+TGG | - | chr1.1:51636689-51636708 | None:intergenic | 35.0% | |
| TAACACACGTAGAACAACAT+AGG | + | chr1.1:51637368-51637387 | MS.gene89578:intron | 35.0% | |
| TCTTCAAAAACTAAGGATGG+AGG | - | chr1.1:51638476-51638495 | None:intergenic | 35.0% | |
| TGATGTCTTGGATAATGATG+AGG | + | chr1.1:51636909-51636928 | MS.gene89578:CDS | 35.0% | |
| TGCAGCAATGTATCATGTAT+CGG | - | chr1.1:51636258-51636277 | None:intergenic | 35.0% | |
| TTAATAGTGCTAGGAAATGC+AGG | + | chr1.1:51637160-51637179 | MS.gene89578:intron | 35.0% | |
| TTTCCAATGAATGATCGTGA+AGG | + | chr1.1:51636508-51636527 | MS.gene89578:intron | 35.0% | |
| ! | CTGAGATTTTCAGCAATTCT+GGG | - | chr1.1:51637045-51637064 | None:intergenic | 35.0% |
| ! | GCAATTCTGGGAAATTAATC+AGG | - | chr1.1:51637033-51637052 | None:intergenic | 35.0% |
| ! | GCTAGCAAGTTACAATTTTG+TGG | + | chr1.1:51637638-51637657 | MS.gene89578:intron | 35.0% |
| ! | TTTAAAAGAGTACAGACGAC+TGG | - | chr1.1:51638306-51638325 | None:intergenic | 35.0% |
| ! | TTTCAATCTTTTGCAGAGAG+AGG | - | chr1.1:51636337-51636356 | None:intergenic | 35.0% |
| !! | CTTTCTTTAAGACATAGAGG+GGG | - | chr1.1:51638569-51638588 | None:intergenic | 35.0% |
| !! | TTTCTTTAAGACATAGAGGG+GGG | - | chr1.1:51638568-51638587 | None:intergenic | 35.0% |
| !! | TTTTGGTACTTTGTTATCGG+GGG | + | chr1.1:51636071-51636090 | MS.gene89578:intron | 35.0% |
| ACAGATTCTGCCATTAGATG+TGG | - | chr1.1:51636850-51636869 | None:intergenic | 40.0% | |
| ACATGATACATTGCTGCAGT+TGG | + | chr1.1:51636260-51636279 | MS.gene89578:intron | 40.0% | |
| ACGCAGTCCAAAAAAACAAG+TGG | - | chr1.1:51637747-51637766 | None:intergenic | 40.0% | |
| CAAACAGAGCCTAAATCACT+AGG | - | chr1.1:51635619-51635638 | None:intergenic | 40.0% | |
| CAGAGAGAGTAAACGTGAAA+TGG | + | chr1.1:51635243-51635262 | MS.gene89578:CDS | 40.0% | |
| CATCCTTCACGATCATTCAT+TGG | - | chr1.1:51636514-51636533 | None:intergenic | 40.0% | |
| CCAGAAACAATCAGCACAAA+TGG | + | chr1.1:51636766-51636785 | MS.gene89578:CDS | 40.0% | |
| CGCAGTCCAAAAAAACAAGT+GGG | - | chr1.1:51637746-51637765 | None:intergenic | 40.0% | |
| CTAGTGATTTAGGCTCTGTT+TGG | + | chr1.1:51635617-51635636 | MS.gene89578:intron | 40.0% | |
| CTGCGACTAAAATATTAGCC+AGG | + | chr1.1:51635932-51635951 | MS.gene89578:CDS | 40.0% | |
| CTTGTTCAAGGTTAAGGGTT+AGG | + | chr1.1:51636435-51636454 | MS.gene89578:intron | 40.0% | |
| GACAGAAGATCTGACAAATC+AGG | + | chr1.1:51636942-51636961 | MS.gene89578:CDS | 40.0% | |
| GCAGCAATGTATCATGTATC+GGG | - | chr1.1:51636257-51636276 | None:intergenic | 40.0% | |
| GGCAATGGAAGCTATGAATA+AGG | + | chr1.1:51636187-51636206 | MS.gene89578:CDS | 40.0% | |
| GTTCGTGTTTCCACATCTAA+TGG | + | chr1.1:51636837-51636856 | MS.gene89578:intron | 40.0% | |
| TACATTACCTCTAGTGGCAT+TGG | - | chr1.1:51635269-51635288 | None:intergenic | 40.0% | |
| TGAGTCACCTAACTGGATTA+TGG | - | chr1.1:51637225-51637244 | None:intergenic | 40.0% | |
| TTGCACATATGATTCTACGG+AGG | + | chr1.1:51638148-51638167 | MS.gene89578:intron | 40.0% | |
| TTGCGGAAGGTCTTACAAAT+TGG | + | chr1.1:51636371-51636390 | MS.gene89578:intron | 40.0% | |
| ! | CCAAGCTTGTTCAAGGTTAA+GGG | + | chr1.1:51636430-51636449 | MS.gene89578:intron | 40.0% |
| ! | GCTGAGATTTTCAGCAATTC+TGG | - | chr1.1:51637046-51637065 | None:intergenic | 40.0% |
| ! | GGTCCATCTGATGCTAATTT+TGG | + | chr1.1:51636054-51636073 | MS.gene89578:intron | 40.0% |
| ! | TATCATCATGCACCTTTTGC+AGG | + | chr1.1:51635909-51635928 | MS.gene89578:intron | 40.0% |
| ! | TCCAAGCTTGTTCAAGGTTA+AGG | + | chr1.1:51636429-51636448 | MS.gene89578:intron | 40.0% |
| ! | TTTGGTACTTTGTTATCGGG+GGG | + | chr1.1:51636072-51636091 | MS.gene89578:intron | 40.0% |
| !! | CCATTTGTGCTGATTGTTTC+TGG | - | chr1.1:51636769-51636788 | None:intergenic | 40.0% |
| !!! | TGAAGCTTTTGTTTTGCGGA+AGG | + | chr1.1:51636358-51636377 | MS.gene89578:intron | 40.0% |
| AACTGCTAAGACGGGAAATG+AGG | + | chr1.1:51635566-51635585 | MS.gene89578:CDS | 45.0% | |
| ACACAGGTACATTGCTTGAG+TGG | + | chr1.1:51636030-51636049 | MS.gene89578:intron | 45.0% | |
| AGATGCCATCGATGATGTCT+TGG | + | chr1.1:51636897-51636916 | MS.gene89578:CDS | 45.0% | |
| ATCGGAACACAGGATGTTAC+AGG | - | chr1.1:51637130-51637149 | None:intergenic | 45.0% | |
| ATGTATCATGTATCGGGCCA+TGG | - | chr1.1:51636251-51636270 | None:intergenic | 45.0% | |
| CAGTTATCAGCAGCTCCAAA+AGG | + | chr1.1:51638375-51638394 | MS.gene89578:intron | 45.0% | |
| CATCAATTTCGGAGCTGCAA+TGG | - | chr1.1:51638791-51638810 | None:intergenic | 45.0% | |
| CCCTTAACCTTGAACAAGCT+TGG | - | chr1.1:51636433-51636452 | None:intergenic | 45.0% | |
| CTTACTAGCACCTTTCATGC+CGG | - | chr1.1:51636168-51636187 | None:intergenic | 45.0% | |
| GTTCTACGTGTGTTATCCCT+GGG | - | chr1.1:51637363-51637382 | None:intergenic | 45.0% | |
| TATTAGCCAGGCAGTTGGTT+AGG | + | chr1.1:51635944-51635963 | MS.gene89578:CDS | 45.0% | |
| TCTCAGCTATACATTGGGCA+TGG | + | chr1.1:51637059-51637078 | MS.gene89578:intron | 45.0% | |
| TGGCAGGTACTCGATGAAAT+CGG | + | chr1.1:51638226-51638245 | MS.gene89578:intron | 45.0% | |
| TGTTCTACGTGTGTTATCCC+TGG | - | chr1.1:51637364-51637383 | None:intergenic | 45.0% | |
| TTCTACGTGTGTTATCCCTG+GGG | - | chr1.1:51637362-51637381 | None:intergenic | 45.0% | |
| TTTGAGCTCGACTACCTTGA+AGG | - | chr1.1:51635990-51636009 | None:intergenic | 45.0% | |
| ! | ATGGTGTCCAAGCTTGTTCA+AGG | + | chr1.1:51636423-51636442 | MS.gene89578:intron | 45.0% |
| ! | GTTGCATTTTATGCACCCCA+GGG | + | chr1.1:51637344-51637363 | MS.gene89578:intron | 45.0% |
| ! | TTGGTACTTTGTTATCGGGG+GGG | + | chr1.1:51636073-51636092 | MS.gene89578:intron | 45.0% |
| ! | TTTTAGTCGCAGCCTGCAAA+AGG | - | chr1.1:51635924-51635943 | None:intergenic | 45.0% |
| !! | ATGTTGCTTCACAGGTTGGT+TGG | + | chr1.1:51638254-51638273 | MS.gene89578:intron | 45.0% |
| !! | GAAAGGTGCTAGTAAGGCAA+TGG | + | chr1.1:51636172-51636191 | MS.gene89578:CDS | 45.0% |
| !! | GCACAGTCTTCTATTTCTGC+CGG | + | chr1.1:51636146-51636165 | MS.gene89578:CDS | 45.0% |
| !! | TCTATTTCTGCCGGCATGAA+AGG | + | chr1.1:51636155-51636174 | MS.gene89578:CDS | 45.0% |
| !! | TGATGACATCGAGAAGCGTT+TGG | + | chr1.1:51638806-51638825 | MS.gene89578:CDS | 45.0% |
| !!! | GTGGGAGTATTTTAGTCAGC+TGG | + | chr1.1:51637707-51637726 | MS.gene89578:intron | 45.0% |
| !!! | AAAAATTTAAAGTATTTTTA+AGG | - | chr1.1:51638047-51638066 | None:intergenic | 5.0% |
| !!! | TTAAAAATACTTTAAATTTT+TGG | + | chr1.1:51638046-51638065 | MS.gene89578:intron | 5.0% |
| !!! | TTTACATTTTTTTTTTTTTT+TGG | + | chr1.1:51635335-51635354 | MS.gene89578:intron | 5.0% |
| AGGCATAGCAACTCACACAC+AGG | + | chr1.1:51636014-51636033 | MS.gene89578:CDS | 50.0% | |
| ATCCTGTGTTCCGATCCCTT+AGG | + | chr1.1:51637135-51637154 | MS.gene89578:intron | 50.0% | |
| CAGGTACATTGCTTGAGTGG+TGG | + | chr1.1:51636033-51636052 | MS.gene89578:intron | 50.0% | |
| GAAATGGCCAATGCCACTAG+AGG | + | chr1.1:51635259-51635278 | MS.gene89578:CDS | 50.0% | |
| GGTAGTCGAGCTCAAATGAG+AGG | + | chr1.1:51635994-51636013 | MS.gene89578:CDS | 50.0% | |
| TCTCAGCTGAGTCACCTAAC+TGG | - | chr1.1:51637232-51637251 | None:intergenic | 50.0% | |
| TTCCTAAGGGATCGGAACAC+AGG | - | chr1.1:51637140-51637159 | None:intergenic | 50.0% | |
| ! | GGTTGCATTTTATGCACCCC+AGG | + | chr1.1:51637343-51637362 | MS.gene89578:intron | 50.0% |
| ! | GTGGATGTTGCTTCACAGGT+TGG | + | chr1.1:51638250-51638269 | MS.gene89578:intron | 50.0% |
| ! | TACTTTGTTATCGGGGGGGT+GGG | + | chr1.1:51636077-51636096 | MS.gene89578:intron | 50.0% |
| !! | CGGCATGAAAGGTGCTAGTA+AGG | + | chr1.1:51636166-51636185 | MS.gene89578:CDS | 50.0% |
| !! | TGACATCGAGAAGCGTTTGG+CGG | + | chr1.1:51638809-51638828 | MS.gene89578:CDS | 50.0% |
| AGACATAGAGGGGGGACTGT+TGG | - | chr1.1:51638560-51638579 | None:intergenic | 55.0% | |
| CCAGGCAGTTGGTTAGGCTT+AGG | + | chr1.1:51635950-51635969 | MS.gene89578:CDS | 55.0% | |
| CCTAAGCCTAACCAACTGCC+TGG | - | chr1.1:51635953-51635972 | None:intergenic | 55.0% | |
| GGGGGACTGTTGGAATGGAT+GGG | - | chr1.1:51638550-51638569 | None:intergenic | 55.0% | |
| GGTACTCGATGAAATCGGCG+TGG | + | chr1.1:51638231-51638250 | MS.gene89578:intron | 55.0% | |
| TAGAGGGGGGACTGTTGGAA+TGG | - | chr1.1:51638555-51638574 | None:intergenic | 55.0% | |
| TGGAGCTGCTGATAACTGCC+AGG | - | chr1.1:51638373-51638392 | None:intergenic | 55.0% | |
| ! | GTACTTTGTTATCGGGGGGG+TGG | + | chr1.1:51636076-51636095 | MS.gene89578:intron | 55.0% |
| GGGGGGACTGTTGGAATGGA+TGG | - | chr1.1:51638551-51638570 | None:intergenic | 60.0% | |
| ! | CGGCGTGGATGTTGCTTCAC+AGG | + | chr1.1:51638246-51638265 | MS.gene89578:CDS | 60.0% |
| CGCGCGCGCACACACACACT+TGG | + | chr1.1:51637894-51637913 | MS.gene89578:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 51635230 | 51638848 | 51635230 | ID=MS.gene89578 |
| chr1.1 | mRNA | 51635230 | 51638848 | 51635230 | ID=MS.gene89578.t1;Parent=MS.gene89578 |
| chr1.1 | exon | 51635230 | 51635280 | 51635230 | ID=MS.gene89578.t1.exon1;Parent=MS.gene89578.t1 |
| chr1.1 | CDS | 51635230 | 51635280 | 51635230 | ID=cds.MS.gene89578.t1;Parent=MS.gene89578.t1 |
| chr1.1 | exon | 51635402 | 51635449 | 51635402 | ID=MS.gene89578.t1.exon2;Parent=MS.gene89578.t1 |
| chr1.1 | CDS | 51635402 | 51635449 | 51635402 | ID=cds.MS.gene89578.t1;Parent=MS.gene89578.t1 |
| chr1.1 | exon | 51635537 | 51635587 | 51635537 | ID=MS.gene89578.t1.exon3;Parent=MS.gene89578.t1 |
| chr1.1 | CDS | 51635537 | 51635587 | 51635537 | ID=cds.MS.gene89578.t1;Parent=MS.gene89578.t1 |
| chr1.1 | exon | 51635931 | 51636035 | 51635931 | ID=MS.gene89578.t1.exon4;Parent=MS.gene89578.t1 |
| chr1.1 | CDS | 51635931 | 51636035 | 51635931 | ID=cds.MS.gene89578.t1;Parent=MS.gene89578.t1 |
| chr1.1 | exon | 51636137 | 51636208 | 51636137 | ID=MS.gene89578.t1.exon5;Parent=MS.gene89578.t1 |
| chr1.1 | CDS | 51636137 | 51636208 | 51636137 | ID=cds.MS.gene89578.t1;Parent=MS.gene89578.t1 |
| chr1.1 | exon | 51636725 | 51636796 | 51636725 | ID=MS.gene89578.t1.exon6;Parent=MS.gene89578.t1 |
| chr1.1 | CDS | 51636725 | 51636796 | 51636725 | ID=cds.MS.gene89578.t1;Parent=MS.gene89578.t1 |
| chr1.1 | exon | 51636883 | 51636963 | 51636883 | ID=MS.gene89578.t1.exon7;Parent=MS.gene89578.t1 |
| chr1.1 | CDS | 51636883 | 51636963 | 51636883 | ID=cds.MS.gene89578.t1;Parent=MS.gene89578.t1 |
| chr1.1 | exon | 51638232 | 51638267 | 51638232 | ID=MS.gene89578.t1.exon8;Parent=MS.gene89578.t1 |
| chr1.1 | CDS | 51638232 | 51638267 | 51638232 | ID=cds.MS.gene89578.t1;Parent=MS.gene89578.t1 |
| chr1.1 | exon | 51638378 | 51638433 | 51638378 | ID=MS.gene89578.t1.exon9;Parent=MS.gene89578.t1 |
| chr1.1 | CDS | 51638378 | 51638433 | 51638378 | ID=cds.MS.gene89578.t1;Parent=MS.gene89578.t1 |
| chr1.1 | exon | 51638797 | 51638848 | 51638797 | ID=MS.gene89578.t1.exon10;Parent=MS.gene89578.t1 |
| chr1.1 | CDS | 51638797 | 51638848 | 51638797 | ID=cds.MS.gene89578.t1;Parent=MS.gene89578.t1 |
| Gene Sequence |
| Protein sequence |
