AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89657

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89657.t1 MTR_8g075790 98.259 402 7 0 1 402 1 402 0.0 793
MS.gene89657.t1 MTR_6g089780 81.088 386 66 4 1 383 1 382 0.0 537
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89657.t1 AT5G02850 57.212 416 134 7 1 382 1 406 1.90e-130 382

Find 127 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAACAGCTTCAAAGATT+TGG 0.171068 8.3:+27946823 None:intergenic
TCAAGTACAGCATGTTAATT+TGG 0.192935 8.3:-27946091 MS.gene89657:CDS
ACCTTTGCACCACCAGAATT+TGG 0.222640 8.3:-27946525 MS.gene89657:CDS
CTCAGCCTCTTTGAGTTTGT+TGG 0.232339 8.3:+27946713 None:intergenic
CTTGTAGATCAATAATTTCT+TGG 0.238178 8.3:+27946796 None:intergenic
CCAGGTGGGATTGCAAAATT+TGG 0.238892 8.3:+27946288 None:intergenic
TCCTTAGTTTCAACTGCTTT+AGG 0.303952 8.3:+27946399 None:intergenic
GCCGTTCCTGCTCCAAATTC+TGG 0.307873 8.3:+27946513 None:intergenic
TTCAAAATTGATGGTGAGTT+AGG 0.310813 8.3:+27947158 None:intergenic
AGAAACAGCTTCAAAGATTT+GGG 0.312622 8.3:+27946824 None:intergenic
CAGCATGTTAATTTGGATCT+TGG 0.324119 8.3:-27946084 MS.gene89657:CDS
TTGAATAACTTCTGGCTGCT+TGG 0.336491 8.3:+27946110 None:intergenic
TGAATAACTTCTGGCTGCTT+GGG 0.340285 8.3:+27946111 None:intergenic
GAAAAGTGAAATAATTTCTT+TGG 0.347180 8.3:+27946860 None:intergenic
AAGATGTATGTGGTTGGGTT+TGG 0.354229 8.3:+27946913 None:intergenic
TAGCAGGGGACTGCACAATT+TGG 0.360653 8.3:+27947198 None:intergenic
AGATGTATGTGGTTGGGTTT+GGG 0.362420 8.3:+27946914 None:intergenic
GGCAATTGTACAGGCATTCC+AGG 0.364622 8.3:+27946258 None:intergenic
AATTTCTGTTCCTCAAATCT+TGG 0.365435 8.3:+27946153 None:intergenic
GGAAATTTGTCTGCAATTCA+AGG 0.366225 8.3:-27946321 MS.gene89657:CDS
CTTCAAAGATTTGGGTTTGA+AGG 0.371634 8.3:+27946832 None:intergenic
GGGTTAGGGTTCAAAATTGA+TGG 0.374317 8.3:+27947149 None:intergenic
ATTTGCTCGTCTTGTGGTGC+AGG 0.382322 8.3:+27946468 None:intergenic
TATCACCTAATAGATCTGTT+TGG 0.387176 8.3:-27946977 MS.gene89657:CDS
GTGACCCAAACAGATCTATT+AGG 0.389505 8.3:+27946972 None:intergenic
ATCCCACCTGGTTGGAAGCC+TGG 0.394354 8.3:-27946276 MS.gene89657:CDS
CCCCTGGTTTCCACCCAGGT+GGG 0.405369 8.3:+27946214 None:intergenic
GTTTGGGAAGAGAGGAATGT+TGG 0.409938 8.3:+27946930 None:intergenic
ATGGTGAGTTAGGGTTTGTA+AGG 0.412789 8.3:+27947168 None:intergenic
TGTTCCTCAAATCTTGGTAC+TGG 0.414379 8.3:+27946159 None:intergenic
ATCACCTAATAGATCTGTTT+GGG 0.417830 8.3:-27946976 MS.gene89657:CDS
TGCTTGGGCTGAGGAATGTG+AGG 0.421123 8.3:+27946126 None:intergenic
GAAAGAAGTGCTTGTGCTCT+AGG 0.423859 8.3:+27947035 None:intergenic
GGGTCGCAGAATGGCGGTCT+TGG 0.424088 8.3:+27947093 None:intergenic
GGAAGATTGATGGGGAAATT+CGG 0.426968 8.3:-27946764 MS.gene89657:CDS
CCTGGTTTCCACCCAGGTGG+GGG 0.430341 8.3:+27946216 None:intergenic
ACAAGCACTTCTTTCTCAAA+TGG 0.432861 8.3:-27947027 MS.gene89657:CDS
TTTCAAAGAGCTTAGAAGCT+AGG 0.437925 8.3:+27947000 None:intergenic
CCCTGGTTTCCACCCAGGTG+GGG 0.439376 8.3:+27946215 None:intergenic
TGAAATAATTTCTTTGGTGG+TGG 0.440045 8.3:+27946866 None:intergenic
TGCTGTACTTGAATAACTTC+TGG 0.447750 8.3:+27946102 None:intergenic
TTTGGGAAGAGAGGAATGTT+GGG 0.450502 8.3:+27946931 None:intergenic
GGCTTAATTGGCATATCAAT+AGG 0.451184 8.3:+27946237 None:intergenic
TCAAAATTGATGGTGAGTTA+GGG 0.457776 8.3:+27947159 None:intergenic
TTTGTAAGGCCTAGCCTAGC+AGG 0.458356 8.3:+27947182 None:intergenic
TTCAAAGAGCTTAGAAGCTA+GGG 0.459504 8.3:+27947001 None:intergenic
ACTTCCAGTACCAAGATTTG+AGG 0.462737 8.3:-27946163 MS.gene89657:CDS
GGAGGAAGATGTATGTGGTT+GGG 0.463180 8.3:+27946908 None:intergenic
CGGCTGAAGGGGTCGCAGAA+TGG 0.469850 8.3:+27947084 None:intergenic
GCCTAAAGCAGTTGAAACTA+AGG 0.471721 8.3:-27946400 MS.gene89657:CDS
CATGTTAATTTGGATCTTGG+TGG 0.474425 8.3:-27946081 MS.gene89657:CDS
GCAGGAACGGCTCCTCTTCG+TGG 0.480751 8.3:-27946501 MS.gene89657:CDS
TCCCCTGGTTTCCACCCAGG+TGG 0.480911 8.3:+27946213 None:intergenic
ATGCTAAGAGGAAGATTGAT+GGG 0.491441 8.3:-27946773 MS.gene89657:CDS
GTGGTTGGGTTTGGGAAGAG+AGG 0.493957 8.3:+27946922 None:intergenic
GTGCAGTCCCCTGCTAGGCT+AGG 0.501533 8.3:-27947191 MS.gene89657:CDS
GATGCTAAGAGGAAGATTGA+TGG 0.503336 8.3:-27946774 MS.gene89657:CDS
ATTTCAATCTCTTGATGCTA+CGG 0.508375 8.3:+27946649 None:intergenic
GGGAGGAAGATGTATGTGGT+TGG 0.510087 8.3:+27946907 None:intergenic
GAAATTTGTCTGCAATTCAA+GGG 0.511231 8.3:-27946320 MS.gene89657:CDS
AGCATCAAGAGATTGAAATC+AGG 0.512194 8.3:-27946645 MS.gene89657:CDS
TTCAAAGATTTGGGTTTGAA+GGG 0.513756 8.3:+27946833 None:intergenic
ATAATTTCTTTGGTGGTGGA+AGG 0.514259 8.3:+27946870 None:intergenic
GGCAATGCCACAGGATCCCC+TGG 0.516326 8.3:+27946198 None:intergenic
TTGATCTACAAGATGCTAAG+AGG 0.520174 8.3:-27946785 MS.gene89657:CDS
AAGTGAAATAATTTCTTTGG+TGG 0.524157 8.3:+27946863 None:intergenic
GGTACTGGAAGTGAGTCAAT+AGG 0.524375 8.3:+27946174 None:intergenic
GGCATTCCAGGCTTCCAACC+AGG 0.524462 8.3:+27946270 None:intergenic
TCCAAATTCTGGTGGTGCAA+AGG 0.525113 8.3:+27946524 None:intergenic
TGCTCGTCTTGTGGTGCAGG+CGG 0.532823 8.3:+27946471 None:intergenic
AAAGAAGTGCTTGTGCTCTA+GGG 0.535828 8.3:+27947036 None:intergenic
GCACCACCAGAATTTGGAGC+AGG 0.537434 8.3:-27946519 MS.gene89657:CDS
GCTTGGGCTGAGGAATGTGA+GGG 0.538621 8.3:+27946127 None:intergenic
GAGAGATTAGAGCGGCTGAA+GGG 0.539964 8.3:+27947072 None:intergenic
AGTGCTTGTGCTCTAGGGAG+GGG 0.540807 8.3:+27947041 None:intergenic
GGATCCCCTGGTTTCCACCC+AGG 0.540867 8.3:+27946210 None:intergenic
ATGGCGGTCTTGGTGATGAT+TGG 0.541492 8.3:+27947103 None:intergenic
AGAGATTAGAGCGGCTGAAG+GGG 0.546886 8.3:+27947073 None:intergenic
CCCCACCTGGGTGGAAACCA+GGG 0.547895 8.3:-27946215 MS.gene89657:CDS
GCTCTCATTTGCTCGTCTTG+TGG 0.552848 8.3:+27946462 None:intergenic
CAAACTCAAAGAGGCTGAGA+GGG 0.552876 8.3:-27946709 MS.gene89657:CDS
ACTTCTGGCTGCTTGGGCTG+AGG 0.554216 8.3:+27946117 None:intergenic
GTTTGGGTCACTGCATTCCG+TGG 0.555385 8.3:-27946960 MS.gene89657:CDS
GGTGGGATTGCAAAATTTGG+TGG 0.556468 8.3:+27946291 None:intergenic
ACCAGAATTTGGAGCAGGAA+CGG 0.558119 8.3:-27946514 MS.gene89657:CDS
TCAATAGGTGGCAATGCCAC+AGG 0.558413 8.3:+27946189 None:intergenic
TATTGAACCTCCACCGTCTG+TGG 0.558939 8.3:-27946358 MS.gene89657:CDS
ACAAACTCAAAGAGGCTGAG+AGG 0.561760 8.3:-27946710 MS.gene89657:CDS
CTTTAGGCAATCCAATATCA+AGG 0.568776 8.3:+27946415 None:intergenic
AAAGATTTGGGTTTGAAGGG+TGG 0.571456 8.3:+27946836 None:intergenic
AGAGAGATTAGAGCGGCTGA+AGG 0.571745 8.3:+27947071 None:intergenic
AAATTGTGCAGTCCCCTGCT+AGG 0.572036 8.3:-27947196 MS.gene89657:CDS
AAGTGCTTGTGCTCTAGGGA+GGG 0.574294 8.3:+27947040 None:intergenic
ATTTGCCAACAAACTCAAAG+AGG 0.575775 8.3:-27946718 MS.gene89657:CDS
CAGCTGAGATGAGACAGTTG+AGG 0.579827 8.3:+27946593 None:intergenic
GAAGTGCTTGTGCTCTAGGG+AGG 0.581529 8.3:+27947039 None:intergenic
TGGTGATGATTGGTCTGTGA+CGG 0.589197 8.3:+27947113 None:intergenic
GGCGGCATTGCACCACGAAG+AGG 0.590196 8.3:+27946489 None:intergenic
ATATCAATAGGCAATTGTAC+AGG 0.595296 8.3:+27946249 None:intergenic
GTGGAAACCAGGGGATCCTG+TGG 0.596117 8.3:-27946205 MS.gene89657:CDS
TGGAAGGCAAAGAAGACTCA+AGG 0.598037 8.3:+27946886 None:intergenic
CTTGGGCTGAGGAATGTGAG+GGG 0.603498 8.3:+27946128 None:intergenic
TTGTAAGGCCTAGCCTAGCA+GGG 0.607794 8.3:+27947183 None:intergenic
TTCCAGGCTTCCAACCAGGT+GGG 0.610482 8.3:+27946274 None:intergenic
CTGAAGGGGTCGCAGAATGG+CGG 0.611153 8.3:+27947087 None:intergenic
CCCACCTGGGTGGAAACCAG+GGG 0.612449 8.3:-27946214 MS.gene89657:CDS
GGAATGTTGGGAGTGATCCA+CGG 0.612539 8.3:+27946943 None:intergenic
GCTTGTGCTCTAGGGAGGGG+TGG 0.619409 8.3:+27947044 None:intergenic
TAGTGATTATAGTAGTGATG+AGG 0.621648 8.3:-27946046 MS.gene89657:CDS
GTTCCTGCTCCAAATTCTGG+TGG 0.622672 8.3:+27946516 None:intergenic
AAGAGATTGAAATCAGGAGA+TGG 0.623575 8.3:-27946639 MS.gene89657:CDS
TTAGTATCCACAGACGGTGG+AGG 0.623669 8.3:+27946351 None:intergenic
TGCTAAGAGGAAGATTGATG+GGG 0.627203 8.3:-27946772 MS.gene89657:CDS
AACTAAGGAGAAAACAGTTG+AGG 0.643452 8.3:-27946385 MS.gene89657:CDS
ATTGCAGACAAATTTCCAAG+TGG 0.646663 8.3:+27946327 None:intergenic
TCAAGGGAGGAAGATGTATG+TGG 0.648873 8.3:+27946903 None:intergenic
TGATGATTGGTCTGTGACGG+TGG 0.648986 8.3:+27947116 None:intergenic
ATTCCAGGCTTCCAACCAGG+TGG 0.651539 8.3:+27946273 None:intergenic
TCTGTGGATACTAATCCACT+TGG 0.655700 8.3:-27946342 MS.gene89657:CDS
ACTGGAAGTGAGTCAATAGG+TGG 0.671543 8.3:+27946177 None:intergenic
GGAAGGCAAAGAAGACTCAA+GGG 0.672881 8.3:+27946887 None:intergenic
TGTAAGGCCTAGCCTAGCAG+GGG 0.696671 8.3:+27947184 None:intergenic
AGTGGATTAGTATCCACAGA+CGG 0.714347 8.3:+27946345 None:intergenic
TTGGGCTGAGGAATGTGAGG+GGG 0.721551 8.3:+27946129 None:intergenic
AGGCAAAGAAGACTCAAGGG+AGG 0.722549 8.3:+27946890 None:intergenic
GGATTAGTATCCACAGACGG+TGG 0.734327 8.3:+27946348 None:intergenic
TGGCAAAAGAGAGATTAGAG+CGG 0.765920 8.3:+27947064 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAGTGAAATAATTTCTT+TGG + chr8.3:27946375-27946394 None:intergenic 20.0%
! AAGTGAAATAATTTCTTTGG+TGG + chr8.3:27946372-27946391 None:intergenic 25.0%
! CTTGTAGATCAATAATTTCT+TGG + chr8.3:27946439-27946458 None:intergenic 25.0%
AATTTCTGTTCCTCAAATCT+TGG + chr8.3:27947082-27947101 None:intergenic 30.0%
AGAAACAGCTTCAAAGATTT+GGG + chr8.3:27946411-27946430 None:intergenic 30.0%
ATATCAATAGGCAATTGTAC+AGG + chr8.3:27946986-27947005 None:intergenic 30.0%
ATCACCTAATAGATCTGTTT+GGG - chr8.3:27946256-27946275 MS.gene89657:CDS 30.0%
ATTTCAATCTCTTGATGCTA+CGG + chr8.3:27946586-27946605 None:intergenic 30.0%
GAAATTTGTCTGCAATTCAA+GGG - chr8.3:27946912-27946931 MS.gene89657:CDS 30.0%
TAGTGATTATAGTAGTGATG+AGG - chr8.3:27947186-27947205 MS.gene89657:CDS 30.0%
TATCACCTAATAGATCTGTT+TGG - chr8.3:27946255-27946274 MS.gene89657:CDS 30.0%
TCAAGTACAGCATGTTAATT+TGG - chr8.3:27947141-27947160 MS.gene89657:CDS 30.0%
TGAAATAATTTCTTTGGTGG+TGG + chr8.3:27946369-27946388 None:intergenic 30.0%
! AATTTTGCAGACCTTGATAT+TGG - chr8.3:27946806-27946825 MS.gene89657:CDS 30.0%
! TTCAAAGATTTGGGTTTGAA+GGG + chr8.3:27946402-27946421 None:intergenic 30.0%
!! TCAAAATTGATGGTGAGTTA+GGG + chr8.3:27946076-27946095 None:intergenic 30.0%
!! TTCAAAATTGATGGTGAGTT+AGG + chr8.3:27946077-27946096 None:intergenic 30.0%
AACTAAGGAGAAAACAGTTG+AGG - chr8.3:27946847-27946866 MS.gene89657:CDS 35.0%
AAGAGATTGAAATCAGGAGA+TGG - chr8.3:27946593-27946612 MS.gene89657:CDS 35.0%
ACAAGCACTTCTTTCTCAAA+TGG - chr8.3:27946205-27946224 MS.gene89657:CDS 35.0%
AGCATCAAGAGATTGAAATC+AGG - chr8.3:27946587-27946606 MS.gene89657:CDS 35.0%
ATGCTAAGAGGAAGATTGAT+GGG - chr8.3:27946459-27946478 MS.gene89657:CDS 35.0%
ATTGCAGACAAATTTCCAAG+TGG + chr8.3:27946908-27946927 None:intergenic 35.0%
ATTTGCCAACAAACTCAAAG+AGG - chr8.3:27946514-27946533 MS.gene89657:CDS 35.0%
CAGAAACAGCTTCAAAGATT+TGG + chr8.3:27946412-27946431 None:intergenic 35.0%
CTTTAGGCAATCCAATATCA+AGG + chr8.3:27946820-27946839 None:intergenic 35.0%
GGAAATTTGTCTGCAATTCA+AGG - chr8.3:27946911-27946930 MS.gene89657:CDS 35.0%
GGCTTAATTGGCATATCAAT+AGG + chr8.3:27946998-27947017 None:intergenic 35.0%
TCCTTAGTTTCAACTGCTTT+AGG + chr8.3:27946836-27946855 None:intergenic 35.0%
TGCTGTACTTGAATAACTTC+TGG + chr8.3:27947133-27947152 None:intergenic 35.0%
TTCAAAGAGCTTAGAAGCTA+GGG + chr8.3:27946234-27946253 None:intergenic 35.0%
TTGATCTACAAGATGCTAAG+AGG - chr8.3:27946447-27946466 MS.gene89657:CDS 35.0%
TTTCAAAGAGCTTAGAAGCT+AGG + chr8.3:27946235-27946254 None:intergenic 35.0%
! CAGCATGTTAATTTGGATCT+TGG - chr8.3:27947148-27947167 MS.gene89657:CDS 35.0%
! CATGTTAATTTGGATCTTGG+TGG - chr8.3:27947151-27947170 MS.gene89657:CDS 35.0%
! CTTCAAAGATTTGGGTTTGA+AGG + chr8.3:27946403-27946422 None:intergenic 35.0%
!! ATAATTTCTTTGGTGGTGGA+AGG + chr8.3:27946365-27946384 None:intergenic 35.0%
AAGATGTATGTGGTTGGGTT+TGG + chr8.3:27946322-27946341 None:intergenic 40.0%
ACTTCCAGTACCAAGATTTG+AGG - chr8.3:27947069-27947088 MS.gene89657:CDS 40.0%
AGATGTATGTGGTTGGGTTT+GGG + chr8.3:27946321-27946340 None:intergenic 40.0%
ATGGTGAGTTAGGGTTTGTA+AGG + chr8.3:27946067-27946086 None:intergenic 40.0%
GATGCTAAGAGGAAGATTGA+TGG - chr8.3:27946458-27946477 MS.gene89657:CDS 40.0%
GCCTAAAGCAGTTGAAACTA+AGG - chr8.3:27946832-27946851 MS.gene89657:CDS 40.0%
GGAAGATTGATGGGGAAATT+CGG - chr8.3:27946468-27946487 MS.gene89657:CDS 40.0%
GGGTTAGGGTTCAAAATTGA+TGG + chr8.3:27946086-27946105 None:intergenic 40.0%
GTGACCCAAACAGATCTATT+AGG + chr8.3:27946263-27946282 None:intergenic 40.0%
TCTGTGGATACTAATCCACT+TGG - chr8.3:27946890-27946909 MS.gene89657:CDS 40.0%
TGCTAAGAGGAAGATTGATG+GGG - chr8.3:27946460-27946479 MS.gene89657:CDS 40.0%
TGGCAAAAGAGAGATTAGAG+CGG + chr8.3:27946171-27946190 None:intergenic 40.0%
TGTTCCTCAAATCTTGGTAC+TGG + chr8.3:27947076-27947095 None:intergenic 40.0%
TTTGGGAAGAGAGGAATGTT+GGG + chr8.3:27946304-27946323 None:intergenic 40.0%
! AAAGATTTGGGTTTGAAGGG+TGG + chr8.3:27946399-27946418 None:intergenic 40.0%
! TGAATAACTTCTGGCTGCTT+GGG + chr8.3:27947124-27947143 None:intergenic 40.0%
! TTGAATAACTTCTGGCTGCT+TGG + chr8.3:27947125-27947144 None:intergenic 40.0%
!! AAAGAAGTGCTTGTGCTCTA+GGG + chr8.3:27946199-27946218 None:intergenic 40.0%
!! AGTGGATTAGTATCCACAGA+CGG + chr8.3:27946890-27946909 None:intergenic 40.0%
ACAAACTCAAAGAGGCTGAG+AGG - chr8.3:27946522-27946541 MS.gene89657:CDS 45.0%
ACCTTTGCACCACCAGAATT+TGG - chr8.3:27946707-27946726 MS.gene89657:CDS 45.0%
ACTGGAAGTGAGTCAATAGG+TGG + chr8.3:27947058-27947077 None:intergenic 45.0%
CAAACTCAAAGAGGCTGAGA+GGG - chr8.3:27946523-27946542 MS.gene89657:CDS 45.0%
CCAGGTGGGATTGCAAAATT+TGG + chr8.3:27946947-27946966 None:intergenic 45.0%
GGAAGGCAAAGAAGACTCAA+GGG + chr8.3:27946348-27946367 None:intergenic 45.0%
GGAGGAAGATGTATGTGGTT+GGG + chr8.3:27946327-27946346 None:intergenic 45.0%
GGTGGGATTGCAAAATTTGG+TGG + chr8.3:27946944-27946963 None:intergenic 45.0%
GTTTGGGAAGAGAGGAATGT+TGG + chr8.3:27946305-27946324 None:intergenic 45.0%
TCAAGGGAGGAAGATGTATG+TGG + chr8.3:27946332-27946351 None:intergenic 45.0%
TGGAAGGCAAAGAAGACTCA+AGG + chr8.3:27946349-27946368 None:intergenic 45.0%
! ACCAGAATTTGGAGCAGGAA+CGG - chr8.3:27946718-27946737 MS.gene89657:CDS 45.0%
! ATTTTGCAATCCCACCTGGT+TGG - chr8.3:27946948-27946967 MS.gene89657:CDS 45.0%
! CCAAATTTTGCAATCCCACC+TGG - chr8.3:27946944-27946963 MS.gene89657:CDS 45.0%
! CTCAGCCTCTTTGAGTTTGT+TGG + chr8.3:27946522-27946541 None:intergenic 45.0%
! GGTACTGGAAGTGAGTCAAT+AGG + chr8.3:27947061-27947080 None:intergenic 45.0%
! TCCAAATTCTGGTGGTGCAA+AGG + chr8.3:27946711-27946730 None:intergenic 45.0%
!! GAAAGAAGTGCTTGTGCTCT+AGG + chr8.3:27946200-27946219 None:intergenic 45.0%
!! GTGGTAGCTTTTGAGGGTTA+GGG + chr8.3:27946100-27946119 None:intergenic 45.0%
!! TGGTGATGATTGGTCTGTGA+CGG + chr8.3:27946122-27946141 None:intergenic 45.0%
AAATTGTGCAGTCCCCTGCT+AGG - chr8.3:27946036-27946055 MS.gene89657:CDS 50.0%
AGAGAGATTAGAGCGGCTGA+AGG + chr8.3:27946164-27946183 None:intergenic 50.0%
AGAGATTAGAGCGGCTGAAG+GGG + chr8.3:27946162-27946181 None:intergenic 50.0%
AGGCAAAGAAGACTCAAGGG+AGG + chr8.3:27946345-27946364 None:intergenic 50.0%
ATTTGCTCGTCTTGTGGTGC+AGG + chr8.3:27946767-27946786 None:intergenic 50.0%
CAGCTGAGATGAGACAGTTG+AGG + chr8.3:27946642-27946661 None:intergenic 50.0%
GAGAGATTAGAGCGGCTGAA+GGG + chr8.3:27946163-27946182 None:intergenic 50.0%
GCTCTCATTTGCTCGTCTTG+TGG + chr8.3:27946773-27946792 None:intergenic 50.0%
GGAATGTTGGGAGTGATCCA+CGG + chr8.3:27946292-27946311 None:intergenic 50.0%
GGCAATTGTACAGGCATTCC+AGG + chr8.3:27946977-27946996 None:intergenic 50.0%
GGGAGGAAGATGTATGTGGT+TGG + chr8.3:27946328-27946347 None:intergenic 50.0%
GTTCCTGCTCCAAATTCTGG+TGG + chr8.3:27946719-27946738 None:intergenic 50.0%
TAGCAGGGGACTGCACAATT+TGG + chr8.3:27946037-27946056 None:intergenic 50.0%
TATTGAACCTCCACCGTCTG+TGG - chr8.3:27946874-27946893 MS.gene89657:CDS 50.0%
TCAATAGGTGGCAATGCCAC+AGG + chr8.3:27947046-27947065 None:intergenic 50.0%
TTAGTATCCACAGACGGTGG+AGG + chr8.3:27946884-27946903 None:intergenic 50.0%
TTGTAAGGCCTAGCCTAGCA+GGG + chr8.3:27946052-27946071 None:intergenic 50.0%
TTTGTAAGGCCTAGCCTAGC+AGG + chr8.3:27946053-27946072 None:intergenic 50.0%
! GGATTAGTATCCACAGACGG+TGG + chr8.3:27946887-27946906 None:intergenic 50.0%
! GTGACGGTGGTAGCTTTTGA+GGG + chr8.3:27946106-27946125 None:intergenic 50.0%
! TGTGACGGTGGTAGCTTTTG+AGG + chr8.3:27946107-27946126 None:intergenic 50.0%
!! AAGTGCTTGTGCTCTAGGGA+GGG + chr8.3:27946195-27946214 None:intergenic 50.0%
!! ATGGCGGTCTTGGTGATGAT+TGG + chr8.3:27946132-27946151 None:intergenic 50.0%
!! GGTGGTAGCTTTTGAGGGTT+AGG + chr8.3:27946101-27946120 None:intergenic 50.0%
!! TGATGATTGGTCTGTGACGG+TGG + chr8.3:27946119-27946138 None:intergenic 50.0%
ATGCCAATTAAGCCCCCACC+TGG - chr8.3:27947004-27947023 MS.gene89657:CDS 55.0%
ATTCCAGGCTTCCAACCAGG+TGG + chr8.3:27946962-27946981 None:intergenic 55.0%
CTTGGGCTGAGGAATGTGAG+GGG + chr8.3:27947107-27947126 None:intergenic 55.0%
GCCGTTCCTGCTCCAAATTC+TGG + chr8.3:27946722-27946741 None:intergenic 55.0%
GCTTGGGCTGAGGAATGTGA+GGG + chr8.3:27947108-27947127 None:intergenic 55.0%
GTGGTTGGGTTTGGGAAGAG+AGG + chr8.3:27946313-27946332 None:intergenic 55.0%
GTTTGGGTCACTGCATTCCG+TGG - chr8.3:27946272-27946291 MS.gene89657:CDS 55.0%
TGCCAATTAAGCCCCCACCT+GGG - chr8.3:27947005-27947024 MS.gene89657:CDS 55.0%
TGCTTGGGCTGAGGAATGTG+AGG + chr8.3:27947109-27947128 None:intergenic 55.0%
TGTAAGGCCTAGCCTAGCAG+GGG + chr8.3:27946051-27946070 None:intergenic 55.0%
TTCCAGGCTTCCAACCAGGT+GGG + chr8.3:27946961-27946980 None:intergenic 55.0%
TTGGGCTGAGGAATGTGAGG+GGG + chr8.3:27947106-27947125 None:intergenic 55.0%
! GCACCACCAGAATTTGGAGC+AGG - chr8.3:27946713-27946732 MS.gene89657:CDS 55.0%
!! AGTGCTTGTGCTCTAGGGAG+GGG + chr8.3:27946194-27946213 None:intergenic 55.0%
!! GAAGTGCTTGTGCTCTAGGG+AGG + chr8.3:27946196-27946215 None:intergenic 55.0%
ATCCCACCTGGTTGGAAGCC+TGG - chr8.3:27946956-27946975 MS.gene89657:CDS 60.0%
CAATTAAGCCCCCACCTGGG+TGG - chr8.3:27947008-27947027 MS.gene89657:CDS 60.0%
CACCCAGGTGGGGGCTTAAT+TGG + chr8.3:27947010-27947029 None:intergenic 60.0%
CTGAAGGGGTCGCAGAATGG+CGG + chr8.3:27946148-27946167 None:intergenic 60.0%
GGCATTCCAGGCTTCCAACC+AGG + chr8.3:27946965-27946984 None:intergenic 60.0%
GTGGAAACCAGGGGATCCTG+TGG - chr8.3:27947027-27947046 MS.gene89657:CDS 60.0%
TGCTCGTCTTGTGGTGCAGG+CGG + chr8.3:27946764-27946783 None:intergenic 60.0%
! ACTTCTGGCTGCTTGGGCTG+AGG + chr8.3:27947118-27947137 None:intergenic 60.0%
CCCACCTGGGTGGAAACCAG+GGG - chr8.3:27947018-27947037 MS.gene89657:CDS 65.0%
CCCCACCTGGGTGGAAACCA+GGG - chr8.3:27947017-27947036 MS.gene89657:CDS 65.0%
CCCCTGGTTTCCACCCAGGT+GGG + chr8.3:27947021-27947040 None:intergenic 65.0%
CCCTGGTTTCCACCCAGGTG+GGG + chr8.3:27947020-27947039 None:intergenic 65.0%
CCTGGTTTCCACCCAGGTGG+GGG + chr8.3:27947019-27947038 None:intergenic 65.0%
CGGCTGAAGGGGTCGCAGAA+TGG + chr8.3:27946151-27946170 None:intergenic 65.0%
GCAGGAACGGCTCCTCTTCG+TGG - chr8.3:27946731-27946750 MS.gene89657:CDS 65.0%
GGATCCCCTGGTTTCCACCC+AGG + chr8.3:27947025-27947044 None:intergenic 65.0%
GGCAATGCCACAGGATCCCC+TGG + chr8.3:27947037-27947056 None:intergenic 65.0%
GGCGGCATTGCACCACGAAG+AGG + chr8.3:27946746-27946765 None:intergenic 65.0%
GGGTCGCAGAATGGCGGTCT+TGG + chr8.3:27946142-27946161 None:intergenic 65.0%
GTGCAGTCCCCTGCTAGGCT+AGG - chr8.3:27946041-27946060 MS.gene89657:CDS 65.0%
TCCCCTGGTTTCCACCCAGG+TGG + chr8.3:27947022-27947041 None:intergenic 65.0%
!! GCTTGTGCTCTAGGGAGGGG+TGG + chr8.3:27946191-27946210 None:intergenic 65.0%
CCCCCACCTGGGTGGAAACC+AGG - chr8.3:27947016-27947035 MS.gene89657:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 27946023 27947231 27946023 ID=MS.gene89657
chr8.3 mRNA 27946023 27947231 27946023 ID=MS.gene89657.t1;Parent=MS.gene89657
chr8.3 exon 27946023 27947231 27946023 ID=MS.gene89657.t1.exon1;Parent=MS.gene89657.t1
chr8.3 CDS 27946023 27947231 27946023 ID=cds.MS.gene89657.t1;Parent=MS.gene89657.t1
Gene Sequence

>MS.gene89657

ATGCTTCAACACCAAATTGTGCAGTCCCCTGCTAGGCTAGGCCTTACAAACCCTAACTCACCATCAATTTTGAACCCTAACCCTCAAAAGCTACCACCGTCACAGACCAATCATCACCAAGACCGCCATTCTGCGACCCCTTCAGCCGCTCTAATCTCTCTTTTGCCACCCCTCCCTAGAGCACAAGCACTTCTTTCTCAAATGGCTTCCCTAGCTTCTAAGCTCTTTGAAATATCACCTAATAGATCTGTTTGGGTCACTGCATTCCGTGGATCACTCCCAACATTCCTCTCTTCCCAAACCCAACCACATACATCTTCCTCCCTTGAGTCTTCTTTGCCTTCCACCACCAAAGAAATTATTTCACTTTTCACCACCCTTCAAACCCAAATCTTTGAAGCTGTTTCTGAACTCCAAGAAATTATTGATCTACAAGATGCTAAGAGGAAGATTGATGGGGAAATTCGGTCAAAAGATTCAGCACTTCTTGCATTTGCCAACAAACTCAAAGAGGCTGAGAGGGAACTTGATATTCTTGTCGATGATTACTCTGATTATCGCCGTAGCATCAAGAGATTGAAATCAGGAGATGGTAGTGAAGATGATTCTTTAACAACCTCAACTGTCTCATCTCAGCTGAAACTGTCAGATATATTATCATATGCTCATCGAATAAGTTATACAACCTTTGCACCACCAGAATTTGGAGCAGGAACGGCTCCTCTTCGTGGTGCAATGCCGCCTGCACCACAAGACGAGCAAATGAGAGCTTCACAGTTATATAATTTTGCAGACCTTGATATTGGATTGCCTAAAGCAGTTGAAACTAAGGAGAAAACAGTTGAGGCTATTATTGAACCTCCACCGTCTGTGGATACTAATCCACTTGGAAATTTGTCTGCAATTCAAGGGATGCTACCACCAAATTTTGCAATCCCACCTGGTTGGAAGCCTGGAATGCCTGTACAATTGCCTATTGATATGCCAATTAAGCCCCCACCTGGGTGGAAACCAGGGGATCCTGTGGCATTGCCACCTATTGACTCACTTCCAGTACCAAGATTTGAGGAACAGAAATTACCCCCTCACATTCCTCAGCCCAAGCAGCCAGAAGTTATTCAAGTACAGCATGTTAATTTGGATCTTGGTGGAGAAAGTGATAGTAGTGATTATAGTAGTGATGAGGCAAGCTCTGATGACGAAGATTAA
Protein sequence

>MS.gene89657.t1

MLQHQIVQSPARLGLTNPNSPSILNPNPQKLPPSQTNHHQDRHSATPSAALISLLPPLPRAQALLSQMASLASKLFEISPNRSVWVTAFRGSLPTFLSSQTQPHTSSSLESSLPSTTKEIISLFTTLQTQIFEAVSELQEIIDLQDAKRKIDGEIRSKDSALLAFANKLKEAERELDILVDDYSDYRRSIKRLKSGDGSEDDSLTTSTVSSQLKLSDILSYAHRISYTTFAPPEFGAGTAPLRGAMPPAPQDEQMRASQLYNFADLDIGLPKAVETKEKTVEAIIEPPPSVDTNPLGNLSAIQGMLPPNFAIPPGWKPGMPVQLPIDMPIKPPPGWKPGDPVALPPIDSLPVPRFEEQKLPPHIPQPKQPEVIQVQHVNLDLGGESDSSDYSSDEASSDDED