Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89679.t1 | XP_028787780.1 | 52.4 | 63 | 27 | 1 | 28 | 87 | 79 | 141 | 4.20E-09 | 70.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89679.t1 | Q0D7E4 | 67.6 | 37 | 12 | 0 | 51 | 87 | 95 | 131 | 3.1e-08 | 59.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89679.t1 | G7LGK5 | 78.4 | 37 | 8 | 0 | 51 | 87 | 104 | 140 | 1.2e-08 | 68.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049681 | MS.gene89679 | 0.819269 | 1.27E-52 | -1.69E-46 |
| MS.gene058710 | MS.gene89679 | 0.800463 | 1.42E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89679.t1 | MTR_3g088460 | 78.378 | 37 | 8 | 0 | 51 | 87 | 104 | 140 | 1.05e-15 | 71.6 |
| MS.gene89679.t1 | MTR_3g088460 | 78.378 | 37 | 8 | 0 | 51 | 87 | 104 | 140 | 1.58e-15 | 70.9 |
| MS.gene89679.t1 | MTR_8g075280 | 91.429 | 35 | 2 | 1 | 4 | 37 | 129 | 163 | 4.14e-12 | 60.1 |
| MS.gene89679.t1 | MTR_3g088440 | 42.857 | 63 | 33 | 1 | 28 | 87 | 71 | 133 | 8.52e-12 | 60.5 |
| MS.gene89679.t1 | MTR_8g075280 | 91.429 | 35 | 2 | 1 | 4 | 37 | 129 | 163 | 8.78e-12 | 60.1 |
| MS.gene89679.t1 | MTR_3g088440 | 42.857 | 63 | 33 | 1 | 28 | 87 | 71 | 133 | 1.99e-11 | 59.3 |
| MS.gene89679.t1 | MTR_3g086440 | 73.684 | 38 | 10 | 0 | 4 | 41 | 64 | 101 | 4.80e-11 | 58.2 |
| MS.gene89679.t1 | MTR_3g010850 | 71.053 | 38 | 11 | 0 | 4 | 41 | 63 | 100 | 7.45e-11 | 57.8 |
| MS.gene89679.t1 | MTR_3g010850 | 71.053 | 38 | 11 | 0 | 4 | 41 | 51 | 88 | 8.43e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAATCAGTACCTCTTC+CGG | 0.396980 | 8.3:+28262266 | None:intergenic |
| ATGGATATTAGCAGAGCTTT+CGG | 0.425234 | 8.3:-28262306 | MS.gene89679:CDS |
| GGTTTGTGACCGGATGTCTA+TGG | 0.448159 | 8.3:-28262325 | MS.gene89679:CDS |
| AGCTTTGACATCTATATTGT+GGG | 0.448584 | 8.3:-28262637 | MS.gene89679:CDS |
| AATTGAGGTCTTACCGGGAC+TGG | 0.449445 | 8.3:+28262559 | None:intergenic |
| ATACTCCGCTTTGCAGAGTT+CGG | 0.457488 | 8.3:+28262352 | None:intergenic |
| TAGCTTTGACATCTATATTG+TGG | 0.480121 | 8.3:-28262638 | MS.gene89679:CDS |
| TGCTAATATCCATAGACATC+CGG | 0.487696 | 8.3:+28262316 | None:intergenic |
| GGATATAATATTGATCCCTA+TGG | 0.491243 | 8.3:-28262616 | MS.gene89679:intron |
| GCAGGATCCTCAATTATGCT+TGG | 0.498328 | 8.3:-28262663 | MS.gene89679:intron |
| AAGTGCCTATGCTGATTATG+TGG | 0.527720 | 8.3:-28262768 | MS.gene89679:CDS |
| AGCTGCAGATACACCGGAAG+AGG | 0.539823 | 8.3:-28262279 | MS.gene89679:intron |
| AGCTATGCCAAGCATAATTG+AGG | 0.553176 | 8.3:+28262656 | None:intergenic |
| TTAAAAGAAGCACATGACAT+TGG | 0.559760 | 8.3:-28260371 | MS.gene89679:CDS |
| TCTGCAAAGCGGAGTATCCA+TGG | 0.565751 | 8.3:-28262346 | MS.gene89679:CDS |
| GAGTATCCATGGTTTGTGAC+CGG | 0.565764 | 8.3:-28262335 | MS.gene89679:CDS |
| TTAGAGGGAATTAATGAATG+AGG | 0.580115 | 8.3:-28262994 | None:intergenic |
| AGACATCCGGTCACAAACCA+TGG | 0.592177 | 8.3:+28262329 | None:intergenic |
| TCTTAGCACAAATCCAGTCC+CGG | 0.622585 | 8.3:-28262572 | MS.gene89679:intron |
| CCGCTTTGCAGAGTTCGGCA+AGG | 0.624173 | 8.3:+28262357 | None:intergenic |
| GGTCATAGCTGCAGATACAC+CGG | 0.626864 | 8.3:-28262285 | MS.gene89679:CDS |
| CTTACCCACATAATCAGCAT+AGG | 0.642322 | 8.3:+28262763 | None:intergenic |
| CCTTGCCGAACTCTGCAAAG+CGG | 0.678058 | 8.3:-28262357 | MS.gene89679:CDS |
| AGTGCCTATGCTGATTATGT+GGG | 0.682994 | 8.3:-28262767 | MS.gene89679:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr8.3:28261523-28261504 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr8.3:28261504-28261523 | MS.gene89679:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr8.3:28261522-28261503 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr8.3:28261503-28261522 | MS.gene89679:intron | 0.0% |
| !! | TAATGTAATTAAGTAAAATA+AGG | + | chr8.3:28262697-28262716 | None:intergenic | 10.0% |
| !!! | AAATTTAAGAAATATTTTAG+AGG | - | chr8.3:28262607-28262626 | MS.gene89679:intron | 10.0% |
| !!! | AATAACTTTTTATTGATAAA+TGG | - | chr8.3:28262079-28262098 | MS.gene89679:intron | 10.0% |
| !!! | AATTTAAGAAATATTTTAGA+GGG | - | chr8.3:28262608-28262627 | MS.gene89679:intron | 10.0% |
| !!! | AATTTTTTATTTTTTTTTGC+AGG | - | chr8.3:28260658-28260677 | MS.gene89679:intron | 10.0% |
| !!! | TATATGAAATATTTATTTTC+AGG | - | chr8.3:28260511-28260530 | MS.gene89679:intron | 10.0% |
| !!! | TATTGTTTAACTTAATTTAA+AGG | + | chr8.3:28261140-28261159 | None:intergenic | 10.0% |
| !! | ATTTACGCTAAAAAATATTT+GGG | - | chr8.3:28261903-28261922 | MS.gene89679:intron | 15.0% |
| !! | TATAACTAAAAAGTGAAAAT+AGG | + | chr8.3:28261375-28261394 | None:intergenic | 15.0% |
| !! | TGAATATAAAGATAAAAGTA+AGG | + | chr8.3:28261114-28261133 | None:intergenic | 15.0% |
| !!! | AAATACAATTCACTTTTATA+TGG | - | chr8.3:28261159-28261178 | MS.gene89679:intron | 15.0% |
| !!! | AAATATTTATTTTCAGGTAA+AGG | - | chr8.3:28260517-28260536 | MS.gene89679:intron | 15.0% |
| !!! | ATTTCATGGATAAATTTTTT+TGG | - | chr8.3:28262575-28262594 | MS.gene89679:intron | 15.0% |
| !!! | TTTTAATATTACAAAAAGTG+AGG | - | chr8.3:28260541-28260560 | MS.gene89679:intron | 15.0% |
| !! | AAACAATTATCAAATTACAC+TGG | - | chr8.3:28262212-28262231 | MS.gene89679:intron | 20.0% |
| !! | AACATTAAATGTTAATTTCG+TGG | + | chr8.3:28262413-28262432 | None:intergenic | 20.0% |
| !! | AATCAAATGTTGGTATATTT+AGG | - | chr8.3:28262636-28262655 | MS.gene89679:CDS | 20.0% |
| !! | ACATTAAATGTTAATTTCGT+GGG | + | chr8.3:28262412-28262431 | None:intergenic | 20.0% |
| !! | ATAAAAGACACTTTCATAAA+AGG | - | chr8.3:28261462-28261481 | MS.gene89679:intron | 20.0% |
| !! | ATCAAATGTTGGTATATTTA+GGG | - | chr8.3:28262637-28262656 | MS.gene89679:CDS | 20.0% |
| !! | CATAAAATATCAAATTCTGA+TGG | - | chr8.3:28260821-28260840 | MS.gene89679:intron | 20.0% |
| !! | CATTTACGCTAAAAAATATT+TGG | - | chr8.3:28261902-28261921 | MS.gene89679:intron | 20.0% |
| !! | TCATATTACAAAAATACTGT+TGG | - | chr8.3:28262133-28262152 | MS.gene89679:intron | 20.0% |
| !! | TTTACGCTAAAAAATATTTG+GGG | - | chr8.3:28261904-28261923 | MS.gene89679:intron | 20.0% |
| !!! | AAACCTTTTGTTTAAAACAT+TGG | - | chr8.3:28260865-28260884 | MS.gene89679:intron | 20.0% |
| !!! | ACCAATTTTGATATAGAATA+AGG | - | chr8.3:28260383-28260402 | MS.gene89679:CDS | 20.0% |
| !!! | ATGTTTTAAACAAAAGGTTT+AGG | + | chr8.3:28260865-28260884 | None:intergenic | 20.0% |
| !!! | CCAATTTTGATATAGAATAA+GGG | - | chr8.3:28260384-28260403 | MS.gene89679:CDS | 20.0% |
| !!! | GTTTTATAATATTGTTACCA+TGG | + | chr8.3:28261986-28262005 | None:intergenic | 20.0% |
| !!! | TGAAGTATTTGTGTTAAAAA+TGG | + | chr8.3:28262361-28262380 | None:intergenic | 20.0% |
| ! | AAATGTTAACAGATTGGAAA+AGG | - | chr8.3:28262436-28262455 | MS.gene89679:intron | 25.0% |
| ! | AAATTGATTGTGGTAGTTAT+TGG | - | chr8.3:28261874-28261893 | MS.gene89679:intron | 25.0% |
| ! | AATTGATTGTGGTAGTTATT+GGG | - | chr8.3:28261875-28261894 | MS.gene89679:intron | 25.0% |
| ! | ACTTGCAATTATTTGTACTT+TGG | - | chr8.3:28262744-28262763 | MS.gene89679:intron | 25.0% |
| ! | ATGGATACAAAACTTATCAT+TGG | - | chr8.3:28262098-28262117 | MS.gene89679:intron | 25.0% |
| ! | ATGTTACCTAAAATTGATTG+TGG | - | chr8.3:28261864-28261883 | MS.gene89679:intron | 25.0% |
| ! | CCCTTATTCTATATCAAAAT+TGG | + | chr8.3:28260387-28260406 | None:intergenic | 25.0% |
| ! | CTTGCAATTATTTGTACTTT+GGG | - | chr8.3:28262745-28262764 | MS.gene89679:intron | 25.0% |
| ! | GTTATGAAATGTTAACAGAT+TGG | - | chr8.3:28262430-28262449 | MS.gene89679:intron | 25.0% |
| ! | TCATGCATAGTAAAATCTTA+TGG | + | chr8.3:28260441-28260460 | None:intergenic | 25.0% |
| ! | TTACTTATTTCACGTTAATG+TGG | + | chr8.3:28260411-28260430 | None:intergenic | 25.0% |
| ! | TTGTTTAATTAAAGTGCGTA+AGG | + | chr8.3:28262198-28262217 | None:intergenic | 25.0% |
| ! | TTTACGTAATATAGCATTTG+TGG | - | chr8.3:28262250-28262269 | MS.gene89679:intron | 25.0% |
| !! | TAACTACCACAATCAATTTT+AGG | + | chr8.3:28261873-28261892 | None:intergenic | 25.0% |
| !!! | AAAAAAAAGTATCACACTGA+TGG | + | chr8.3:28260916-28260935 | None:intergenic | 25.0% |
| !!! | ATCAATTTTAGTGTTCGTAA+TGG | - | chr8.3:28262798-28262817 | MS.gene89679:CDS | 25.0% |
| !!! | ATTTGTTGTTTGAATTTTGC+AGG | - | chr8.3:28260953-28260972 | MS.gene89679:intron | 25.0% |
| !!! | CATGGATAAATTTTTTTGGA+GGG | - | chr8.3:28262579-28262598 | MS.gene89679:intron | 25.0% |
| !!! | TCAATTTTAGTGTTCGTAAT+GGG | - | chr8.3:28262799-28262818 | MS.gene89679:CDS | 25.0% |
| !!! | TCACCAATGTTTTAAACAAA+AGG | + | chr8.3:28260871-28260890 | None:intergenic | 25.0% |
| !!! | TCATGGATAAATTTTTTTGG+AGG | - | chr8.3:28262578-28262597 | MS.gene89679:intron | 25.0% |
| AATATCAAATTCTGATGGCA+TGG | - | chr8.3:28260826-28260845 | MS.gene89679:intron | 30.0% | |
| ACACCTTCATAAAAAGTAGT+TGG | + | chr8.3:28261658-28261677 | None:intergenic | 30.0% | |
| ATAAAAGACACCTTCACAAA+AGG | + | chr8.3:28261603-28261622 | None:intergenic | 30.0% | |
| GACATCTTCATAAAGTAAGT+TGG | - | chr8.3:28261407-28261426 | MS.gene89679:intron | 30.0% | |
| GGATATAATATTGATCCCTA+TGG | - | chr8.3:28260723-28260742 | MS.gene89679:intron | 30.0% | |
| ! | AATGTCATGTGCTTCTTTTA+AGG | + | chr8.3:28262969-28262988 | None:intergenic | 30.0% |
| ! | AGATTTTACTATGCATGATC+TGG | - | chr8.3:28260443-28260462 | MS.gene89679:intron | 30.0% |
| ! | AGCTTTGACATCTATATTGT+GGG | - | chr8.3:28260702-28260721 | MS.gene89679:intron | 30.0% |
| ! | ATGTCATGTGCTTCTTTTAA+GGG | + | chr8.3:28262968-28262987 | None:intergenic | 30.0% |
| ! | TGTAACATGGACTAATTTCA+TGG | - | chr8.3:28262561-28262580 | MS.gene89679:intron | 30.0% |
| ! | TTAAAAGAAGCACATGACAT+TGG | - | chr8.3:28262968-28262987 | MS.gene89679:intron | 30.0% |
| !! | TAAAAGGTGCTAAACTGAAA+TGG | - | chr8.3:28262867-28262886 | MS.gene89679:intron | 30.0% |
| !! | TAGCTTTGACATCTATATTG+TGG | - | chr8.3:28260701-28260720 | MS.gene89679:intron | 30.0% |
| !!! | ACACCAACTACTTTTTATGA+AGG | - | chr8.3:28261652-28261671 | MS.gene89679:intron | 30.0% |
| !!! | TGTTATTTTCTCTTTCACCA+TGG | - | chr8.3:28261966-28261985 | MS.gene89679:intron | 30.0% |
| AAAGAAATCAGTACCTCTTC+CGG | + | chr8.3:28261076-28261095 | None:intergenic | 35.0% | |
| AAAGGAAGAATACTGATCCA+AGG | - | chr8.3:28262454-28262473 | MS.gene89679:intron | 35.0% | |
| AAAGTGAAAATCACACCTTG+AGG | - | chr8.3:28261701-28261720 | MS.gene89679:intron | 35.0% | |
| AAGACCAAACAATGTGTTGA+GGG | + | chr8.3:28260751-28260770 | None:intergenic | 35.0% | |
| AAGGAAGAATACTGATCCAA+GGG | - | chr8.3:28262455-28262474 | MS.gene89679:intron | 35.0% | |
| ATGGATATTAGCAGAGCTTT+CGG | - | chr8.3:28261033-28261052 | MS.gene89679:intron | 35.0% | |
| CACCTTCATAAAAAGTAGTG+TGG | + | chr8.3:28261746-28261765 | None:intergenic | 35.0% | |
| GAGGGACTAAAATCAAATGT+TGG | - | chr8.3:28262626-28262645 | MS.gene89679:CDS | 35.0% | |
| GTAGTAGAAGACATCAAAGA+AGG | + | chr8.3:28260619-28260638 | None:intergenic | 35.0% | |
| TAAGACCAAACAATGTGTTG+AGG | + | chr8.3:28260752-28260771 | None:intergenic | 35.0% | |
| TATGTAAAACCCCCAGTAAA+AGG | - | chr8.3:28262851-28262870 | MS.gene89679:intron | 35.0% | |
| TGCTAATATCCATAGACATC+CGG | + | chr8.3:28261026-28261045 | None:intergenic | 35.0% | |
| TGTTAAAAGACACCACCAAA+GGG | + | chr8.3:28261345-28261364 | None:intergenic | 35.0% | |
| TTGTAACACAACCTCAATTG+AGG | + | chr8.3:28260798-28260817 | None:intergenic | 35.0% | |
| TTGTTAAAAGACACCACCAA+AGG | + | chr8.3:28261346-28261365 | None:intergenic | 35.0% | |
| ! | ATAGAAGACACCTTTTGTGA+AGG | - | chr8.3:28261590-28261609 | MS.gene89679:intron | 35.0% |
| ! | TCAGTTTAGCACCTTTTACT+GGG | + | chr8.3:28262865-28262884 | None:intergenic | 35.0% |
| ! | TTCAGTTTAGCACCTTTTAC+TGG | + | chr8.3:28262866-28262885 | None:intergenic | 35.0% |
| ! | TTTTATCAAGTCACACCTCA+AGG | + | chr8.3:28261719-28261738 | None:intergenic | 35.0% |
| !! | TCTTTTAAGGGCATATCTTC+TGG | + | chr8.3:28262956-28262975 | None:intergenic | 35.0% |
| !!! | CACCACACTACTTTTTATGA+AGG | - | chr8.3:28261741-28261760 | MS.gene89679:intron | 35.0% |
| !!! | TTTTTTTACAAGCCACCCTT+TGG | - | chr8.3:28261327-28261346 | MS.gene89679:intron | 35.0% |
| AACCTCAATTGAGGTCTTAC+CGG | + | chr8.3:28260789-28260808 | None:intergenic | 40.0% | |
| AATGGGTGCATGTTTCTTTG+CGG | - | chr8.3:28262816-28262835 | MS.gene89679:intron | 40.0% | |
| AGCTATGCCAAGCATAATTG+AGG | + | chr8.3:28260686-28260705 | None:intergenic | 40.0% | |
| AGCTGTTCCAAAACCGAAAA+GGG | + | chr8.3:28262491-28262510 | None:intergenic | 40.0% | |
| AGGAAGAATACTGATCCAAG+GGG | - | chr8.3:28262456-28262475 | MS.gene89679:intron | 40.0% | |
| CTCAAAATCAGACCCAAAAG+GGG | + | chr8.3:28262912-28262931 | None:intergenic | 40.0% | |
| CTTACCCACATAATCAGCAT+AGG | + | chr8.3:28260579-28260598 | None:intergenic | 40.0% | |
| GCTCAAAATCAGACCCAAAA+GGG | + | chr8.3:28262913-28262932 | None:intergenic | 40.0% | |
| TGCTCAAAATCAGACCCAAA+AGG | + | chr8.3:28262914-28262933 | None:intergenic | 40.0% | |
| ! | AAGTGCCTATGCTGATTATG+TGG | - | chr8.3:28260571-28260590 | MS.gene89679:intron | 40.0% |
| ! | AGCTGATGTTATTCCCCTTT+TGG | - | chr8.3:28262896-28262915 | MS.gene89679:intron | 40.0% |
| ! | AGTGCCTATGCTGATTATGT+GGG | - | chr8.3:28260572-28260591 | MS.gene89679:intron | 40.0% |
| ! | AGTTTAGCACCTTTTACTGG+GGG | + | chr8.3:28262863-28262882 | None:intergenic | 40.0% |
| ! | CAGTTTAGCACCTTTTACTG+GGG | + | chr8.3:28262864-28262883 | None:intergenic | 40.0% |
| ! | GCTGATGTTATTCCCCTTTT+GGG | - | chr8.3:28262897-28262916 | MS.gene89679:intron | 40.0% |
| !! | AATGTGTTGAGGGTACCATA+GGG | + | chr8.3:28260741-28260760 | None:intergenic | 40.0% |
| !! | TTTTGGGTCTGATTTTGAGC+AGG | - | chr8.3:28262913-28262932 | MS.gene89679:intron | 40.0% |
| ACCTCAATTGAGGTCTTACC+GGG | + | chr8.3:28260788-28260807 | None:intergenic | 45.0% | |
| ATACTCCGCTTTGCAGAGTT+CGG | + | chr8.3:28260990-28261009 | None:intergenic | 45.0% | |
| CAGCTGTTCCAAAACCGAAA+AGG | + | chr8.3:28262492-28262511 | None:intergenic | 45.0% | |
| GCAGGATCCTCAATTATGCT+TGG | - | chr8.3:28260676-28260695 | MS.gene89679:intron | 45.0% | |
| GGTACCCTCAACACATTGTT+TGG | - | chr8.3:28260744-28260763 | MS.gene89679:intron | 45.0% | |
| GTACTTTGGGCATGCAGATA+AGG | - | chr8.3:28262758-28262777 | MS.gene89679:intron | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | chr8.3:28261342-28261361 | None:intergenic | 45.0% | |
| TCTTAGCACAAATCCAGTCC+CGG | - | chr8.3:28260767-28260786 | MS.gene89679:intron | 45.0% | |
| ! | AGAGTAGCCCTTTTCGGTTT+TGG | - | chr8.3:28262481-28262500 | MS.gene89679:intron | 45.0% |
| ! | ATCATGGCTTGCGTGTAACA+TGG | - | chr8.3:28262548-28262567 | MS.gene89679:intron | 45.0% |
| ! | GAGTATCCATGGTTTGTGAC+CGG | - | chr8.3:28261004-28261023 | MS.gene89679:intron | 45.0% |
| ! | TTTTACAAGCCACCCTTTGG+TGG | - | chr8.3:28261330-28261349 | MS.gene89679:intron | 45.0% |
| !! | CAATGTGTTGAGGGTACCAT+AGG | + | chr8.3:28260742-28260761 | None:intergenic | 45.0% |
| !! | ATTATATATTAGTATAAAAT+AGG | + | chr8.3:28260641-28260660 | None:intergenic | 5.0% |
| !!! | TAAAATATTTCTTAAATTTT+TGG | + | chr8.3:28262606-28262625 | None:intergenic | 5.0% |
| AAAGGGCTACTCTTTCCCCT+TGG | + | chr8.3:28262474-28262493 | None:intergenic | 50.0% | |
| AATTGAGGTCTTACCGGGAC+TGG | + | chr8.3:28260783-28260802 | None:intergenic | 50.0% | |
| AGACATCCGGTCACAAACCA+TGG | + | chr8.3:28261013-28261032 | None:intergenic | 50.0% | |
| CAAGCCATGATGCTGCAACA+TGG | + | chr8.3:28262539-28262558 | None:intergenic | 50.0% | |
| GGTCATAGCTGCAGATACAC+CGG | - | chr8.3:28261054-28261073 | MS.gene89679:intron | 50.0% | |
| GGTTTGTGACCGGATGTCTA+TGG | - | chr8.3:28261014-28261033 | MS.gene89679:intron | 50.0% | |
| TCCCGGTAAGACCTCAATTG+AGG | - | chr8.3:28260784-28260803 | MS.gene89679:intron | 50.0% | |
| ! | GGGGAAAGAGTAGCCCTTTT+CGG | - | chr8.3:28262475-28262494 | MS.gene89679:intron | 50.0% |
| ! | TCTGCAAAGCGGAGTATCCA+TGG | - | chr8.3:28260993-28261012 | MS.gene89679:intron | 50.0% |
| AGCTGCAGATACACCGGAAG+AGG | - | chr8.3:28261060-28261079 | MS.gene89679:intron | 55.0% | |
| CCTTGCCGAACTCTGCAAAG+CGG | - | chr8.3:28260982-28261001 | MS.gene89679:intron | 55.0% | |
| GCCATGATGCTGCAACATGG+AGG | + | chr8.3:28262536-28262555 | None:intergenic | 55.0% | |
| GCCTCCATGTTGCAGCATCA+TGG | - | chr8.3:28262532-28262551 | MS.gene89679:intron | 55.0% | |
| CCGCTTTGCAGAGTTCGGCA+AGG | + | chr8.3:28260985-28261004 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 28260358 | 28263003 | 28260358 | ID=MS.gene89679 |
| chr8.3 | mRNA | 28260358 | 28263003 | 28260358 | ID=MS.gene89679.t1;Parent=MS.gene89679 |
| chr8.3 | exon | 28262995 | 28263003 | 28262995 | ID=MS.gene89679.t1.exon1;Parent=MS.gene89679.t1 |
| chr8.3 | CDS | 28262995 | 28263003 | 28262995 | ID=cds.MS.gene89679.t1;Parent=MS.gene89679.t1 |
| chr8.3 | exon | 28262768 | 28262828 | 28262768 | ID=MS.gene89679.t1.exon2;Parent=MS.gene89679.t1 |
| chr8.3 | CDS | 28262768 | 28262828 | 28262768 | ID=cds.MS.gene89679.t1;Parent=MS.gene89679.t1 |
| chr8.3 | exon | 28262617 | 28262681 | 28262617 | ID=MS.gene89679.t1.exon3;Parent=MS.gene89679.t1 |
| chr8.3 | CDS | 28262617 | 28262681 | 28262617 | ID=cds.MS.gene89679.t1;Parent=MS.gene89679.t1 |
| chr8.3 | exon | 28262573 | 28262588 | 28262573 | ID=MS.gene89679.t1.exon4;Parent=MS.gene89679.t1 |
| chr8.3 | CDS | 28262573 | 28262588 | 28262573 | ID=cds.MS.gene89679.t1;Parent=MS.gene89679.t1 |
| chr8.3 | exon | 28262280 | 28262386 | 28262280 | ID=MS.gene89679.t1.exon5;Parent=MS.gene89679.t1 |
| chr8.3 | CDS | 28262280 | 28262386 | 28262280 | ID=cds.MS.gene89679.t1;Parent=MS.gene89679.t1 |
| chr8.3 | exon | 28260358 | 28260426 | 28260358 | ID=MS.gene89679.t1.exon6;Parent=MS.gene89679.t1 |
| chr8.3 | CDS | 28260358 | 28260426 | 28260358 | ID=cds.MS.gene89679.t1;Parent=MS.gene89679.t1 |
| Gene Sequence |
| Protein sequence |
