AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058710.t1 MTR_7g079530 98.958 192 2 0 1 192 66 257 9.25e-144 400
MS.gene058710.t1 MTR_7g079530 99.342 152 1 0 1 152 66 217 3.82e-113 322
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058710.t1 AT1G79790 66.489 188 63 0 1 188 55 242 6.42e-95 276
MS.gene058710.t1 AT1G79790 58.685 213 63 1 1 188 55 267 3.89e-89 262
MS.gene058710.t1 AT1G79790 52.027 148 46 1 66 188 1 148 1.32e-49 158

Find 28 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGAATGTCTTTGTAAAA+AGG 0.218541 7.4:-26381741 None:intergenic
AAAGACATTCCAAAGAATTC+TGG 0.243321 7.4:-26381759 None:intergenic
AAAGACATTCCAGAATTCTT+TGG 0.273979 7.4:+26381750 MS.gene058710:CDS
AGCTATCAAAATATTTATCT+TGG 0.295092 7.4:+26384747 MS.gene058710:CDS
CTTAAAACTTGTATGAGAAA+TGG 0.339472 7.4:+26384534 MS.gene058710:CDS
TCTATGAAAATACAATATTC+TGG 0.343770 7.4:-26385027 None:intergenic
AATGGGTATTCATACATAGA+AGG 0.378988 7.4:+26384552 MS.gene058710:CDS
ACCGGATACTGAATTCTATA+AGG 0.381928 7.4:+26384978 MS.gene058710:CDS
TTAAAACTTGTATGAGAAAT+GGG 0.400962 7.4:+26384535 MS.gene058710:CDS
ATCATGGATTGAATTTGAAA+AGG 0.404815 7.4:+26381812 MS.gene058710:CDS
TTTATTGTGTTTCAGGAAAG+AGG 0.415252 7.4:+26384953 MS.gene058710:intron
TCATGGATTGAATTTGAAAA+GGG 0.431737 7.4:+26381813 MS.gene058710:CDS
TCCTTATAGAATTCAGTATC+CGG 0.443431 7.4:-26384979 None:intergenic
GCGCGAAGAACTGTCATTGA+TGG 0.454275 7.4:+26385394 MS.gene058710:CDS
TGCAGGCAGCAGCTGAAGTT+GGG 0.455154 7.4:+26385336 MS.gene058710:CDS
GTGCAGGCAGCAGCTGAAGT+TGG 0.459723 7.4:+26385335 MS.gene058710:CDS
AGCAGCTGAAGTTGGGATCA+AGG 0.467596 7.4:+26385343 MS.gene058710:CDS
CGCGAAGAACTGTCATTGAT+GGG 0.472416 7.4:+26385395 MS.gene058710:CDS
TCAAATTCAATCCATGATGT+TGG 0.476853 7.4:-26381807 None:intergenic
AATTCTATAAGGAAGTTGTC+AGG 0.516039 7.4:+26384989 MS.gene058710:CDS
ATGGGTATTCATACATAGAA+GGG 0.518947 7.4:+26384553 MS.gene058710:CDS
TGTTTCAGGAAAGAGGAAAC+CGG 0.520264 7.4:+26384960 MS.gene058710:intron
TGAAAAGGGTCTTATTGATG+AGG 0.538520 7.4:+26381827 MS.gene058710:CDS
ATTGCAAACATCCAACATCA+TGG 0.556457 7.4:+26381796 MS.gene058710:CDS
GCAGCTGAAGTTGGGATCAA+GGG 0.568479 7.4:+26385344 MS.gene058710:CDS
GCGAAGAACTGTCATTGATG+GGG 0.637374 7.4:+26385396 MS.gene058710:CDS
TGGGTATTCATACATAGAAG+GGG 0.656968 7.4:+26384554 MS.gene058710:CDS
CGAAGAACTGTCATTGATGG+GGG 0.683926 7.4:+26385397 MS.gene058710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATAAACAATTTTTGT+GGG - chr7.4:26383853-26383872 None:intergenic 10.0%
!! AATAAGTTTATTAAAGTTTG+TGG - chr7.4:26382687-26382706 None:intergenic 15.0%
!! ATTGTTTATAAATAGATTCA+AGG + chr7.4:26383859-26383878 MS.gene058710:intron 15.0%
!! CAAAAAATCAATCATTTAAA+AGG - chr7.4:26384145-26384164 None:intergenic 15.0%
!! TAATATTAATCTTGATATTG+CGG - chr7.4:26382770-26382789 None:intergenic 15.0%
!! TATGAATTTAAATTGCAATT+GGG + chr7.4:26381942-26381961 MS.gene058710:intron 15.0%
!! TTATGAATTTAAATTGCAAT+TGG + chr7.4:26381941-26381960 MS.gene058710:intron 15.0%
!! TTATGATATTATATCCTAAT+TGG + chr7.4:26384843-26384862 MS.gene058710:intron 15.0%
!! TTGTTTATAAATAGATTCAA+GGG + chr7.4:26383860-26383879 MS.gene058710:intron 15.0%
!! TTTATACATAACATGAAAAA+GGG - chr7.4:26381903-26381922 None:intergenic 15.0%
!!! ATTTATAAACAATTTTTGTG+GGG - chr7.4:26383852-26383871 None:intergenic 15.0%
!!! CTATTTATAAACAATTTTTG+TGG - chr7.4:26383854-26383873 None:intergenic 15.0%
!! AAAAAGAACTCATCATTTAA+AGG + chr7.4:26384873-26384892 MS.gene058710:intron 20.0%
!! AGCTATCAAAATATTTATCT+TGG + chr7.4:26384747-26384766 MS.gene058710:CDS 20.0%
!! ATAAAGACAACAGTATATAT+TGG - chr7.4:26384335-26384354 None:intergenic 20.0%
!! ATAAATGAGAAATTTGTACT+CGG - chr7.4:26383354-26383373 None:intergenic 20.0%
!! ATAAATTGTAAGTGATATCA+TGG - chr7.4:26385102-26385121 None:intergenic 20.0%
!! ATGAATTTAAATTGCAATTG+GGG + chr7.4:26381943-26381962 MS.gene058710:intron 20.0%
!! CAATTCTTAGATTTATTTCA+AGG - chr7.4:26382881-26382900 None:intergenic 20.0%
!! CTTTATACATAACATGAAAA+AGG - chr7.4:26381904-26381923 None:intergenic 20.0%
!! GTTAAAAAATGAAGATGATT+TGG + chr7.4:26382307-26382326 MS.gene058710:intron 20.0%
!! TACCATTATATTAAGAAGTT+TGG - chr7.4:26383153-26383172 None:intergenic 20.0%
!! TATCAAAGTAGTTTATCATA+AGG + chr7.4:26385270-26385289 MS.gene058710:intron 20.0%
!! TCTATGAAAATACAATATTC+TGG - chr7.4:26385030-26385049 None:intergenic 20.0%
!! TTAAAACTTGTATGAGAAAT+GGG + chr7.4:26384535-26384554 MS.gene058710:CDS 20.0%
!! TTATGATAAACTACTTTGAT+AGG - chr7.4:26385271-26385290 None:intergenic 20.0%
!! TTCCAAACTTCTTAATATAA+TGG + chr7.4:26383148-26383167 MS.gene058710:intron 20.0%
!!! AAAAGTTCTAAGAAATTTGA+AGG - chr7.4:26382012-26382031 None:intergenic 20.0%
!!! AATCTGTTTTATTTTCTTTC+AGG + chr7.4:26382088-26382107 MS.gene058710:intron 20.0%
!!! AATGATGAGTTCTTTTTTTT+CGG - chr7.4:26384870-26384889 None:intergenic 20.0%
!!! AATTCATTTTCTTACCATAT+AGG - chr7.4:26384642-26384661 None:intergenic 20.0%
!!! ATTTCATTTGAATTTGCTAA+TGG + chr7.4:26385241-26385260 MS.gene058710:intron 20.0%
!!! CTCAAAGTTATTTTTCTTTA+AGG - chr7.4:26384598-26384617 None:intergenic 20.0%
!!! CTTTTACTAATTATCCTATA+TGG + chr7.4:26384625-26384644 MS.gene058710:CDS 20.0%
!!! GTAAATGGTAATTATGTTTT+GGG + chr7.4:26384251-26384270 MS.gene058710:intron 20.0%
!!! TGTAAATGGTAATTATGTTT+TGG + chr7.4:26384250-26384269 MS.gene058710:intron 20.0%
!!! TTCATTTCTACAACTATTTT+GGG - chr7.4:26382523-26382542 None:intergenic 20.0%
!!! TTTCATTTCTACAACTATTT+TGG - chr7.4:26382524-26382543 None:intergenic 20.0%
!!! TTTTATGTGCTAATTGAAAT+AGG + chr7.4:26384380-26384399 MS.gene058710:intron 20.0%
! AAGTAAATTGGGTCAAAATT+TGG - chr7.4:26383809-26383828 None:intergenic 25.0%
! AATATCTTTGTCTATGTGAA+TGG - chr7.4:26382596-26382615 None:intergenic 25.0%
! ACAGTATATATTGGAAAATG+AGG - chr7.4:26384326-26384345 None:intergenic 25.0%
! AGATAGTTAGATCTCAAATA+TGG - chr7.4:26383717-26383736 None:intergenic 25.0%
! AGATTATACAAAATCAGCAA+GGG - chr7.4:26383478-26383497 None:intergenic 25.0%
! CTTAAAACTTGTATGAGAAA+TGG + chr7.4:26384534-26384553 MS.gene058710:CDS 25.0%
! GAATAATAGGAATTTACCAT+AGG - chr7.4:26383973-26383992 None:intergenic 25.0%
! GATAGTTAGATCTCAAATAT+GGG - chr7.4:26383716-26383735 None:intergenic 25.0%
! TAAATGAGAAATTTGTACTC+GGG - chr7.4:26383353-26383372 None:intergenic 25.0%
! TACTGTTTCAATTAATCAAG+TGG - chr7.4:26382649-26382668 None:intergenic 25.0%
! TAGATTATACAAAATCAGCA+AGG - chr7.4:26383479-26383498 None:intergenic 25.0%
! TATAAATAGATTCAAGGGAA+GGG + chr7.4:26383865-26383884 MS.gene058710:intron 25.0%
! TATATAGTTATTGTCTTCTC+AGG + chr7.4:26385303-26385322 MS.gene058710:intron 25.0%
! TTAGTATTTGATCTTATGTG+TGG + chr7.4:26382200-26382219 MS.gene058710:intron 25.0%
! TTATAAATAGATTCAAGGGA+AGG + chr7.4:26383864-26383883 MS.gene058710:intron 25.0%
! TTCCTGAAACACAATAAAAA+TGG - chr7.4:26384951-26384970 None:intergenic 25.0%
! TTCTTAGATTTATTTCAAGG+TGG - chr7.4:26382878-26382897 None:intergenic 25.0%
!! AAAAAATGAAGATGATTTGG+AGG + chr7.4:26382310-26382329 MS.gene058710:intron 25.0%
!! AAATGGCTCTATAATATTCA+AGG - chr7.4:26384934-26384953 None:intergenic 25.0%
!! ATCATGGATTGAATTTGAAA+AGG + chr7.4:26381812-26381831 MS.gene058710:CDS 25.0%
!! ATTGTATTTTCATAGATGAC+AGG + chr7.4:26385034-26385053 MS.gene058710:CDS 25.0%
!! CATTTCTCATACAAGTTTTA+AGG - chr7.4:26384536-26384555 None:intergenic 25.0%
!! GAATTTTCTATTGCAATATC+TGG + chr7.4:26384657-26384676 MS.gene058710:intron 25.0%
!! TACGTAATATTTTGTACTGT+AGG + chr7.4:26384699-26384718 MS.gene058710:intron 25.0%
!! TCATGGATTGAATTTGAAAA+GGG + chr7.4:26381813-26381832 MS.gene058710:CDS 25.0%
!! TTCGCTTAAAGATTTTCATA+AGG - chr7.4:26384081-26384100 None:intergenic 25.0%
!! TTGGGTTGTTATTAACATTA+AGG + chr7.4:26384269-26384288 MS.gene058710:intron 25.0%
!!! AAAGTTTTTTAAGGATGGAA+GGG + chr7.4:26382124-26382143 MS.gene058710:CDS 25.0%
!!! GAAAGAAAGTTTTTTAAGGA+TGG + chr7.4:26382119-26382138 MS.gene058710:CDS 25.0%
!!! GCTAGAAAGAAAGTTTTTTA+AGG + chr7.4:26382115-26382134 MS.gene058710:CDS 25.0%
AAAAAGCTGATGAACACAAA+AGG - chr7.4:26384817-26384836 None:intergenic 30.0%
AAAGACATTCCAAAGAATTC+TGG - chr7.4:26381762-26381781 None:intergenic 30.0%
AAAGACATTCCAGAATTCTT+TGG + chr7.4:26381750-26381769 MS.gene058710:CDS 30.0%
AAAGACTAAGGTGGAATAAT+AGG - chr7.4:26383986-26384005 None:intergenic 30.0%
AACTTCTGTTAATCCAATAC+AGG + chr7.4:26384099-26384118 MS.gene058710:intron 30.0%
AAGGTAGACAAAAACTGATT+TGG - chr7.4:26383743-26383762 None:intergenic 30.0%
AATGGGTATTCATACATAGA+AGG + chr7.4:26384552-26384571 MS.gene058710:CDS 30.0%
AATTCTATAAGGAAGTTGTC+AGG + chr7.4:26384989-26385008 MS.gene058710:CDS 30.0%
AGGGTTGTAAAAAAGAATGA+AGG - chr7.4:26383762-26383781 None:intergenic 30.0%
AGTAATCTGAGAAGAAAAGT+AGG - chr7.4:26383585-26383604 None:intergenic 30.0%
AGTAGCTATATCAAAAGAGA+GGG - chr7.4:26384485-26384504 None:intergenic 30.0%
AGTGATTTCCAAACTTTCAA+AGG + chr7.4:26383113-26383132 MS.gene058710:intron 30.0%
ATATTCAAGGTTTCCATGAA+AGG - chr7.4:26384921-26384940 None:intergenic 30.0%
ATGGGTATTCATACATAGAA+GGG + chr7.4:26384553-26384572 MS.gene058710:CDS 30.0%
CTGGAATGTCTTTGTAAAAA+GGG - chr7.4:26381743-26381762 None:intergenic 30.0%
CTGTACAAGACAAATACTTA+AGG + chr7.4:26384041-26384060 MS.gene058710:intron 30.0%
CTTTGTCATATGTAGATTAC+TGG + chr7.4:26382247-26382266 MS.gene058710:intron 30.0%
GAAATGAAACCAAATAGTTG+TGG + chr7.4:26382535-26382554 MS.gene058710:intron 30.0%
GATAAACTACTTTGATAGGT+TGG - chr7.4:26385267-26385286 None:intergenic 30.0%
TAAAGAATATAACGGCACAA+GGG - chr7.4:26383183-26383202 None:intergenic 30.0%
TCAAATTCAATCCATGATGT+TGG - chr7.4:26381810-26381829 None:intergenic 30.0%
TCCTTATAGAATTCAGTATC+CGG - chr7.4:26384982-26385001 None:intergenic 30.0%
TGGCGTACTAAAGAATATAA+CGG - chr7.4:26383191-26383210 None:intergenic 30.0%
TGTTTCAATTAATCAAGTGG+TGG - chr7.4:26382646-26382665 None:intergenic 30.0%
TTAGATGTGGTTTACTCATA+TGG + chr7.4:26382339-26382358 MS.gene058710:intron 30.0%
TTTATTGTGTTTCAGGAAAG+AGG + chr7.4:26384953-26384972 MS.gene058710:intron 30.0%
! AGGTAGACAAAAACTGATTT+GGG - chr7.4:26383742-26383761 None:intergenic 30.0%
! CTTAGAACTTTTGCATTGAA+TGG + chr7.4:26382020-26382039 MS.gene058710:intron 30.0%
! GCTTAAAGATTTTCATAAGG+AGG - chr7.4:26384078-26384097 None:intergenic 30.0%
! GTTAATCCAATACAGGTTTT+GGG + chr7.4:26384106-26384125 MS.gene058710:intron 30.0%
! TCTGGAATGTCTTTGTAAAA+AGG - chr7.4:26381744-26381763 None:intergenic 30.0%
! TGTTAATCCAATACAGGTTT+TGG + chr7.4:26384105-26384124 MS.gene058710:intron 30.0%
! TTACCAAGAGTGTATATCTT+TGG + chr7.4:26383073-26383092 MS.gene058710:intron 30.0%
! TTTCACTACCTTTGAAAGTT+TGG - chr7.4:26383124-26383143 None:intergenic 30.0%
!! CATTGAATGGATTGATAGTT+TGG + chr7.4:26382033-26382052 MS.gene058710:intron 30.0%
!! GATTTGTTATTGATCGATCA+AGG - chr7.4:26383639-26383658 None:intergenic 30.0%
!!! AAATTCTGCAGGTTTTAGTT+TGG - chr7.4:26382727-26382746 None:intergenic 30.0%
!!! ACTTTTTTAGGAGGATAAGT+GGG - chr7.4:26383547-26383566 None:intergenic 30.0%
!!! AGCCATTTTTATTGTGTTTC+AGG + chr7.4:26384946-26384965 MS.gene058710:intron 30.0%
!!! CAATGAATCACTTTTTTAGG+AGG - chr7.4:26383556-26383575 None:intergenic 30.0%
!!! CTGTTTTATTTTCTTTCAGG+CGG + chr7.4:26382091-26382110 MS.gene058710:intron 30.0%
!!! GAAAGTTTTTTAAGGATGGA+AGG + chr7.4:26382123-26382142 MS.gene058710:CDS 30.0%
!!! TCTTTTTTTTCGGTCCAATT+AGG - chr7.4:26384860-26384879 None:intergenic 30.0%
!!! TGGCAATGAATCACTTTTTT+AGG - chr7.4:26383559-26383578 None:intergenic 30.0%
AAGTAACATATAGCCAGTCA+AGG - chr7.4:26384362-26384381 None:intergenic 35.0%
ACCGGATACTGAATTCTATA+AGG + chr7.4:26384978-26384997 MS.gene058710:CDS 35.0%
ACGAAAGGATATCCACAATT+TGG - chr7.4:26382844-26382863 None:intergenic 35.0%
ACGCATTTATTCTATTGCTG+AGG - chr7.4:26383218-26383237 None:intergenic 35.0%
AGACGGTAAAGAAAAGACTA+AGG - chr7.4:26383998-26384017 None:intergenic 35.0%
AGAGAAATGGGAAGAAGTAA+AGG - chr7.4:26383242-26383261 None:intergenic 35.0%
AGTTAGCGAGGAAAGTAAAT+TGG - chr7.4:26383821-26383840 None:intergenic 35.0%
ATACAAAATCAGCAAGGGTA+AGG - chr7.4:26383473-26383492 None:intergenic 35.0%
ATCTTTGTCTATGTGAATGG+TGG - chr7.4:26382593-26382612 None:intergenic 35.0%
ATGAGGGAGAGATTTACATT+GGG - chr7.4:26385181-26385200 None:intergenic 35.0%
ATGCTTATGTACTAGCATCT+TGG + chr7.4:26385153-26385172 MS.gene058710:intron 35.0%
ATTGCAAACATCCAACATCA+TGG + chr7.4:26381796-26381815 MS.gene058710:CDS 35.0%
CAACCAAAGATATACACTCT+TGG - chr7.4:26383079-26383098 None:intergenic 35.0%
CAACTAAATCTCTCCTTAAG+AGG + chr7.4:26383510-26383529 MS.gene058710:intron 35.0%
CAGTAGCTATATCAAAAGAG+AGG - chr7.4:26384486-26384505 None:intergenic 35.0%
CTAAAGAATATAACGGCACA+AGG - chr7.4:26383184-26383203 None:intergenic 35.0%
CTGAGAAGAAAAGTAGGAAA+TGG - chr7.4:26383579-26383598 None:intergenic 35.0%
GAACAGATGATGAGAGAAAT+GGG - chr7.4:26383254-26383273 None:intergenic 35.0%
GAGAAATGGGAAGAAGTAAA+GGG - chr7.4:26383241-26383260 None:intergenic 35.0%
GAGAGATTTAGTTGTCGTTA+TGG - chr7.4:26383504-26383523 None:intergenic 35.0%
GGATTTAGTGTGTAGTGAAA+AGG - chr7.4:26383788-26383807 None:intergenic 35.0%
GTACATTATGAATGCTCTCA+TGG - chr7.4:26384434-26384453 None:intergenic 35.0%
GTAGCATTGTGAACAAGAAT+TGG - chr7.4:26383422-26383441 None:intergenic 35.0%
GTAGCTATATCAAAAGAGAG+GGG - chr7.4:26384484-26384503 None:intergenic 35.0%
GTTAGCGAGGAAAGTAAATT+GGG - chr7.4:26383820-26383839 None:intergenic 35.0%
TAGCTATATCAAAAGAGAGG+GGG - chr7.4:26384483-26384502 None:intergenic 35.0%
TATAGCTGCAAACCAAATTG+TGG + chr7.4:26382829-26382848 MS.gene058710:intron 35.0%
TATTCTATTGCTGAGGCATA+TGG - chr7.4:26383211-26383230 None:intergenic 35.0%
TCATCAATGGCCAAAGATAA+AGG - chr7.4:26383296-26383315 None:intergenic 35.0%
TGAAAGGGATCCTTTATCTT+TGG + chr7.4:26383283-26383302 MS.gene058710:intron 35.0%
TGGGTATTCATACATAGAAG+GGG + chr7.4:26384554-26384573 MS.gene058710:CDS 35.0%
TGGTGATTGAGAATTTGAGA+CGG - chr7.4:26384015-26384034 None:intergenic 35.0%
TTATCTTTGGCCATTGATGA+TGG + chr7.4:26383296-26383315 MS.gene058710:intron 35.0%
TTATTGATCGATCAAGGAAG+TGG - chr7.4:26383633-26383652 None:intergenic 35.0%
TTTGTCTTGTACAGCTTAAC+TGG - chr7.4:26384035-26384054 None:intergenic 35.0%
! AGCAAAGTTATTGAGAGTAC+TGG - chr7.4:26384180-26384199 None:intergenic 35.0%
! CAAGAGTGTATATCTTTGGT+TGG + chr7.4:26383077-26383096 MS.gene058710:intron 35.0%
! GCATGTTCTTTTTCTATGAC+AGG + chr7.4:26384510-26384529 MS.gene058710:intron 35.0%
! GTGGCATAATTTTACACGAA+AGG - chr7.4:26382859-26382878 None:intergenic 35.0%
! TTGGAGGTACAAATTAGATG+TGG + chr7.4:26382326-26382345 MS.gene058710:intron 35.0%
!! AATCAAGTGGTGGAGAATTT+TGG - chr7.4:26382636-26382655 None:intergenic 35.0%
!! CAATTTGGTTTGCAGCTATA+TGG - chr7.4:26382829-26382848 None:intergenic 35.0%
!! TGAAAAGGGTCTTATTGATG+AGG + chr7.4:26381827-26381846 MS.gene058710:CDS 35.0%
!!! AATATCTGGTTTGCTTTTCG+TGG + chr7.4:26384671-26384690 MS.gene058710:intron 35.0%
!!! CACTTTTTTAGGAGGATAAG+TGG - chr7.4:26383548-26383567 None:intergenic 35.0%
!!! GGAAGGGATTTTGATTTACA+AGG + chr7.4:26382140-26382159 MS.gene058710:CDS 35.0%
!!! TTTGAGTGTGCTTGTTTTGA+TGG + chr7.4:26381968-26381987 MS.gene058710:intron 35.0%
AAATTGCTAGAGGGAAGCTT+GGG - chr7.4:26383683-26383702 None:intergenic 40.0%
AACATATAGCCAGTCAAGGT+AGG - chr7.4:26384358-26384377 None:intergenic 40.0%
AAGAAAGAGAGGAAGTAGAC+TGG + chr7.4:26383908-26383927 MS.gene058710:intron 40.0%
ACACTCAGACTATCCTTTCA+TGG + chr7.4:26384905-26384924 MS.gene058710:intron 40.0%
ACAGGATCTTGAAGAAAGAG+AGG + chr7.4:26383897-26383916 MS.gene058710:intron 40.0%
AGAAATTTGTACTCGGGTGA+TGG - chr7.4:26383347-26383366 None:intergenic 40.0%
AGCTTGGGAAATGTTCAGTA+TGG - chr7.4:26383668-26383687 None:intergenic 40.0%
ATCTCAAATATGGGTCGTGT+GGG - chr7.4:26383707-26383726 None:intergenic 40.0%
CAAATGATCCCCTTTCTCAT+CGG + chr7.4:26382904-26382923 MS.gene058710:intron 40.0%
CAGATAAGTCAGAGTTGAGA+AGG + chr7.4:26383936-26383955 MS.gene058710:intron 40.0%
CCAAATAGTTGTGGAAGTTG+TGG + chr7.4:26382544-26382563 MS.gene058710:intron 40.0%
CCACAACTTCCACAACTATT+TGG - chr7.4:26382547-26382566 None:intergenic 40.0%
CCCACACATTATGTTAGAGT+GGG + chr7.4:26383034-26383053 MS.gene058710:intron 40.0%
CCCACTCTAACATAATGTGT+GGG - chr7.4:26383037-26383056 None:intergenic 40.0%
CGGTAAAGAAAAGACTAAGG+TGG - chr7.4:26383995-26384014 None:intergenic 40.0%
CTCATTTATTGCTCGCTTGT+CGG + chr7.4:26383365-26383384 MS.gene058710:intron 40.0%
CTGATGCACGACATTGTAAA+TGG + chr7.4:26384236-26384255 MS.gene058710:intron 40.0%
GATGAGGGAGAGATTTACAT+TGG - chr7.4:26385182-26385201 None:intergenic 40.0%
GGAACAGATGATGAGAGAAA+TGG - chr7.4:26383255-26383274 None:intergenic 40.0%
TCCCACACATTATGTTAGAG+TGG + chr7.4:26383033-26383052 MS.gene058710:intron 40.0%
TCCCACTCTAACATAATGTG+TGG - chr7.4:26383038-26383057 None:intergenic 40.0%
TGTCTTTATCCTACCTTGAC+TGG + chr7.4:26384346-26384365 MS.gene058710:intron 40.0%
TGTGGTTTACTCATATGGTC+TGG + chr7.4:26382344-26382363 MS.gene058710:intron 40.0%
TGTTTCAGGAAAGAGGAAAC+CGG + chr7.4:26384960-26384979 MS.gene058710:intron 40.0%
TTGGGAAATGTTCAGTATGG+TGG - chr7.4:26383665-26383684 None:intergenic 40.0%
TTGTGGGGTGAATTATTCAG+TGG - chr7.4:26382952-26382971 None:intergenic 40.0%
TTTGTTCGTGTACACTTGGT+AGG + chr7.4:26384774-26384793 MS.gene058710:intron 40.0%
! CAATCTTCTCAAGTGTTGTG+GGG - chr7.4:26382967-26382986 None:intergenic 40.0%
! CCAATCTTCTCAAGTGTTGT+GGG - chr7.4:26382968-26382987 None:intergenic 40.0%
! GTGAACAAGAATTGGTTCAG+CGG - chr7.4:26383414-26383433 None:intergenic 40.0%
! GTTTGTGGAAATTTTGCAGC+TGG - chr7.4:26382672-26382691 None:intergenic 40.0%
! TATGTCTGCTGCTTGATTAG+AGG - chr7.4:26385213-26385232 None:intergenic 40.0%
! TCCAATCTTCTCAAGTGTTG+TGG - chr7.4:26382969-26382988 None:intergenic 40.0%
!! ACGTTTTGTTCGTGTACACT+TGG + chr7.4:26384770-26384789 MS.gene058710:CDS 40.0%
!! GTGGTTGACAGTTTTAGTCT+TGG - chr7.4:26383614-26383633 None:intergenic 40.0%
AGAGAGGAAGTAGACTGGAA+AGG + chr7.4:26383913-26383932 MS.gene058710:intron 45.0%
AGCTCCTGTTCCATCATCAA+TGG - chr7.4:26383309-26383328 None:intergenic 45.0%
AGGGAAGGGCAAATATTGAC+AGG + chr7.4:26383879-26383898 MS.gene058710:intron 45.0%
AGTGTGTAGTGAAAAGGCTG+AGG - chr7.4:26383782-26383801 None:intergenic 45.0%
AGTTACGTCCGATGAGAAAG+GGG - chr7.4:26382915-26382934 None:intergenic 45.0%
ATATCAAAAGAGAGGGGGCT+TGG - chr7.4:26384478-26384497 None:intergenic 45.0%
CAGTTACGTCCGATGAGAAA+GGG - chr7.4:26382916-26382935 None:intergenic 45.0%
CCCACAACACTTGAGAAGAT+TGG + chr7.4:26382965-26382984 MS.gene058710:intron 45.0%
CGAAGAACTGTCATTGATGG+GGG + chr7.4:26385397-26385416 MS.gene058710:CDS 45.0%
CGATGAGAAAGGGGATCATT+TGG - chr7.4:26382906-26382925 None:intergenic 45.0%
CGCGAAGAACTGTCATTGAT+GGG + chr7.4:26385395-26385414 MS.gene058710:CDS 45.0%
CTGTTCCTACTCACGTGAAA+GGG + chr7.4:26383268-26383287 MS.gene058710:intron 45.0%
GAAATTGCTAGAGGGAAGCT+TGG - chr7.4:26383684-26383703 None:intergenic 45.0%
GATCTCAAATATGGGTCGTG+TGG - chr7.4:26383708-26383727 None:intergenic 45.0%
GATGGAACAGGAGCTGTATT+AGG + chr7.4:26383314-26383333 MS.gene058710:intron 45.0%
GCGAAGAACTGTCATTGATG+GGG + chr7.4:26385396-26385415 MS.gene058710:CDS 45.0%
GCTGAAACAAACTGGTAGAC+AGG - chr7.4:26383392-26383411 None:intergenic 45.0%
GGCAAGAGAGATACCTCTTA+AGG - chr7.4:26383526-26383545 None:intergenic 45.0%
GGGTGAATTATTCAGTGGCT+AGG - chr7.4:26382947-26382966 None:intergenic 45.0%
GTGTGTAGTGAAAAGGCTGA+GGG - chr7.4:26383781-26383800 None:intergenic 45.0%
TACTGAAGCGGAAATTCTGC+AGG - chr7.4:26382738-26382757 None:intergenic 45.0%
TCACTTCTACCTTCCACAAC+CGG + chr7.4:26383442-26383461 MS.gene058710:intron 45.0%
TCAGTTACGTCCGATGAGAA+AGG - chr7.4:26382917-26382936 None:intergenic 45.0%
TCTCAAATATGGGTCGTGTG+GGG - chr7.4:26383706-26383725 None:intergenic 45.0%
TCTCAGGCCAAAAAATGTGC+AGG + chr7.4:26385319-26385338 MS.gene058710:intron 45.0%
TCTGTTCCTACTCACGTGAA+AGG + chr7.4:26383267-26383286 MS.gene058710:intron 45.0%
TGCAAGCCCAAAACCTGTAT+TGG - chr7.4:26384115-26384134 None:intergenic 45.0%
!! TTGGCCATTGATGATGGAAC+AGG + chr7.4:26383302-26383321 MS.gene058710:intron 45.0%
AACAGGAGCTGTATTAGGCG+TGG + chr7.4:26383319-26383338 MS.gene058710:intron 50.0%
AAGGTATGTCCGGTTGTGGA+AGG - chr7.4:26383454-26383473 None:intergenic 50.0%
AGCAGCTGAAGTTGGGATCA+AGG + chr7.4:26385343-26385362 MS.gene058710:CDS 50.0%
AGGATCCCTTTCACGTGAGT+AGG - chr7.4:26383276-26383295 None:intergenic 50.0%
CAGCAAGGGTAAGGTATGTC+CGG - chr7.4:26383464-26383483 None:intergenic 50.0%
CGGCTGTACTGTTACTGAAG+CGG - chr7.4:26382750-26382769 None:intergenic 50.0%
CGTGTGGGGAAATTGCTAGA+GGG - chr7.4:26383692-26383711 None:intergenic 50.0%
CTGCTTGATTAGAGGTGACG+CGG - chr7.4:26385205-26385224 None:intergenic 50.0%
GAAGGACATTCGACTGCCTA+TGG + chr7.4:26383954-26383973 MS.gene058710:intron 50.0%
GCAGCTGAAGTTGGGATCAA+GGG + chr7.4:26385344-26385363 MS.gene058710:CDS 50.0%
GCGCGAAGAACTGTCATTGA+TGG + chr7.4:26385394-26385413 MS.gene058710:CDS 50.0%
GTTCAGCGGCTGAAACAAAC+TGG - chr7.4:26383400-26383419 None:intergenic 50.0%
TCGTGTGGGGAAATTGCTAG+AGG - chr7.4:26383693-26383712 None:intergenic 50.0%
TGCTTGATTAGAGGTGACGC+GGG - chr7.4:26385204-26385223 None:intergenic 50.0%
!!! GCTGCTGCCTGCACATTTTT+TGG - chr7.4:26385329-26385348 None:intergenic 50.0%
ATTAGAGGTGACGCGGGATG+AGG - chr7.4:26385198-26385217 None:intergenic 55.0%
GGGGTAAGAGTGAGTTAGCG+AGG - chr7.4:26383833-26383852 None:intergenic 55.0%
GGGTAAGGTATGTCCGGTTG+TGG - chr7.4:26383458-26383477 None:intergenic 55.0%
TGCAGGCAGCAGCTGAAGTT+GGG + chr7.4:26385336-26385355 MS.gene058710:CDS 55.0%
TTAGAGGTGACGCGGGATGA+GGG - chr7.4:26385197-26385216 None:intergenic 55.0%
GTGCAGGCAGCAGCTGAAGT+TGG + chr7.4:26385335-26385354 MS.gene058710:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 26381720 26385448 26381720 ID=MS.gene058710
chr7.4 mRNA 26381720 26385448 26381720 ID=MS.gene058710.t1;Parent=MS.gene058710
chr7.4 exon 26381720 26381848 26381720 ID=MS.gene058710.t1.exon1;Parent=MS.gene058710.t1
chr7.4 CDS 26381720 26381848 26381720 ID=cds.MS.gene058710.t1;Parent=MS.gene058710.t1
chr7.4 exon 26382110 26382161 26382110 ID=MS.gene058710.t1.exon2;Parent=MS.gene058710.t1
chr7.4 CDS 26382110 26382161 26382110 ID=cds.MS.gene058710.t1;Parent=MS.gene058710.t1
chr7.4 exon 26384532 26384646 26384532 ID=MS.gene058710.t1.exon3;Parent=MS.gene058710.t1
chr7.4 CDS 26384532 26384646 26384532 ID=cds.MS.gene058710.t1;Parent=MS.gene058710.t1
chr7.4 exon 26384721 26384791 26384721 ID=MS.gene058710.t1.exon4;Parent=MS.gene058710.t1
chr7.4 CDS 26384721 26384791 26384721 ID=cds.MS.gene058710.t1;Parent=MS.gene058710.t1
chr7.4 exon 26384968 26385055 26384968 ID=MS.gene058710.t1.exon5;Parent=MS.gene058710.t1
chr7.4 CDS 26384968 26385055 26384968 ID=cds.MS.gene058710.t1;Parent=MS.gene058710.t1
chr7.4 exon 26385325 26385448 26385325 ID=MS.gene058710.t1.exon6;Parent=MS.gene058710.t1
chr7.4 CDS 26385325 26385448 26385325 ID=cds.MS.gene058710.t1;Parent=MS.gene058710.t1
Gene Sequence

>MS.gene058710

ATGGACACAATTGTTCGTGACCCTTTTTACAAAGACATTCCAGAATTCTTTGGAATGTCTTTCAATGAACTCATAGATTGCAAACATCCAACATCATGGATTGAATTTGAAAAGGGTCTTATTGATGAGGTAAAAACTAAAGCAATACACTTTGATATAATTCACTGCAAAATTAAAAGACCCTTTTTCATGTTATGTATAAAGATCGAATCTTTTTACAATTATGAATTTAAATTGCAATTGGGGCATTTGAGTGTGCTTGTTTTGATGGTATCTTCATTCATGATGACCTTCAAATTTCTTAGAACTTTTGCATTGAATGGATTGATAGTTTGGTAGTTTCTGCTTTTATCAGTAGTTTTCTTATCAATCTGTTTTATTTTCTTTCAGGCGGAGCTAGAAAGAAAGTTTTTTAAGGATGGAAGGGATTTTGATTTACAAGGTTTGTCTCAGATTTTGTTGTTAGATAGAGTTGATCACTTAGTATTTGATCTTATGTGTGGTGAATTGAACAAATATAAGTATAACTTTGTCATATGTAGATTACTTGTTAATATAAGTATAACTTTGTCATATGTAGATTACTGGTTAAAAAATGAAGATGATTTGGAGGTACAAATTAGATGTGGTTTACTCATATGGTCTGGATTATCATATATACTGCTAGAAAACATGTTAGCTTTTCTTTTCTCATTTTTGCTAAAAAAGTGTTATGCTTCTTCTTTATTGCTCAAAATAAAGATGAGTTCACAAGTACATGATGTACTTGTAAATCTGAACATGAGTACAGACTACAGATTCCCAAAATAGTTGTAGAAATGAAACCAAATAGTTGTGGAAGTTGTGGCAAGTAATTGATATTTCAACAAGCCACCATTCACATAGACAAAGATATTATGTGTTGTCTATCACACCAAAATTCTCCACCACTTGATTAATTGAAACAGTACCAGCTGCAAAATTTCCACAAACTTTAATAAACTTATTGATGAATCAATGTCAGTCCAAACTAAAACCTGCAGAATTTCCGCTTCAGTAACAGTACAGCCGCAATATCAAGATTAATATTATGAATTTTGTTGCACATTTCTTAATTTTCAAATTATCCATATAGCTGCAAACCAAATTGTGGATATCCTTTCGTGTAAAATTATGCCACCTTGAAATAAATCTAAGAATTGAACCAAATGATCCCCTTTCTCATCGGACGTAACTGAACAAAAGCCTAGCCACTGAATAATTCACCCCACAACACTTGAGAAGATTGGACACTAAAAAAAGAAGTGTCTAATTGTTTCGATTTGATCACAGTCTCCCACACATTATGTTAGAGTGGGATCAATAATTCTCGTCTTACCAAGAGTGTATATCTTTGGTTGGTACTTTATCTTGTAGTGATTTCCAAACTTTCAAAGGTAGTGAAAGTTATTCCAAACTTCTTAATATAATGGTAGATATTTCCCTTGTGCCGTTATATTCTTTAGTACGCCATATGCCTCAGCAATAGAATAAATGCGTCCCTTTACTTCTTCCCATTTCTCTCATCATCTGTTCCTACTCACGTGAAAGGGATCCTTTATCTTTGGCCATTGATGATGGAACAGGAGCTGTATTAGGCGTGGCTCCATCACCCGAGTACAAATTTCTCATTTATTGCTCGCTTGTCGGACCTGTCTACCAGTTTGTTTCAGCCGCTGAACCAATTCTTGTTCACAATGCTACTCACTTCTACCTTCCACAACCGGACATACCTTACCCTTGCTGATTTTGTATAATCTATGCCATAACGACAACTAAATCTCTCCTTAAGAGGTATCTCTCTTGCCCACTTATCCTCCTAAAAAAGTGATTCATTGCCATTTCCTACTTTTCTTCTCAGATTACTTGAAAACCAAGACTAAAACTGTCAACCACTTCCTTGATCGATCAATAACAAATCTCTCCACCATACTGAACATTTCCCAAGCTTCCCTCTAGCAATTTCCCCACACGACCCATATTTGAGATCTAACTATCTTACCCAAATCAGTTTTTGTCTACCTTCATTCTTTTTTACAACCCTCAGCCTTTTCACTACACACTAAATCCAAATTTTGACCCAATTTACTTTCCTCGCTAACTCACTCTTACCCCACAAAAATTGTTTATAAATAGATTCAAGGGAAGGGCAAATATTGACAGGATCTTGAAGAAAGAGAGGAAGTAGACTGGAAAGGCAGATAAGTCAGAGTTGAGAAGGACATTCGACTGCCTATGGTAAATTCCTATTATTCCACCTTAGTCTTTTCTTTACCGTCTCAAATTCTCAATCACCAGTTAAGCTGTACAAGACAAATACTTAAGGAGAGATATAGTCCTCCTTATGAAAATCTTTAAGCGAACTTCTGTTAATCCAATACAGGTTTTGGGCTTGCATTAATTTCCTTTTAAATGATTGATTTTTTGTTATTCGCTGTACCAGTACTCTCAATAACTTTGCTGTAAAATATTATCTTTGAATTAGTGTGAATTTAGTTCTGATGCACGACATTGTAAATGGTAATTATGTTTTGGGTTGTTATTAACATTAAGGTAGATAAGTTAGAGTTACACTGCAAACAAGTCCTCATTTTCCAATATATACTGTTGTCTTTATCCTACCTTGACTGGCTATATGTTACTTTTATGTGCTAATTGAAATAGGTCAATAATTTGATGTCAACATCAAAATTCCATGAGAGCATTCATAATGTACTCTGTGTATCATTTTTGTGCTCCAAGCCCCCTCTCTTTTGATATAGCTACTGACTTGCATGTTCTTTTTCTATGACAGGCCTTAAAACTTGTATGAGAAATGGGTATTCATACATAGAAGGGGTTGAACAATTGCTTCTTGCCTTAAAGAAAAATAACTTTGAGATGCATGCTTTTACTAATTATCCTATATGGTAAGAAAATGAATTTTCTATTGCAATATCTGGTTTGCTTTTCGTGGCATTCTACGTAATATTTTGTACTGTAGGTATCAGTTGATCGAAGACAAGTTAAAGCTATCAAAATATTTATCTTGGACGTTTTGTTCGTGTACACTTGGTAGGCTCTCTCACTCTCTATGCCTTTTGTGTTCATCAGCTTTTTGTTTGATTATGATATTATATCCTAATTGGACCGAAAAAAAAGAACTCATCATTTAAAGGTCAAACTATACACTCAGACTATCCTTTCATGGAAACCTTGAATATTATAGAGCCATTTTTATTGTGTTTCAGGAAAGAGGAAACCGGATACTGAATTCTATAAGGAAGTTGTCAGGCATCTTGAAGTTGATCCAGAATATTGTATTTTCATAGATGACAGGTTTCTAAAACTTCTATACATCAGATTATTTATGAAAATCAAACCATGATATCACTTACAATTTATCAATAATACAATACACACAGATTTGTATGCAATGCTTATGTACTAGCATCTTGGCACCCAATGTAAATCTCTCCCTCATCCCGCGTCACCTCTAATCAAGCAGCAGACATAAGCAGATTATTTCATTTGAATTTGCTAATGGCCAACCTATCAAAGTAGTTTATCATAAGGTGTGTCTAATTATATAGTTATTGTCTTCTCAGGCCAAAAAATGTGCAGGCAGCAGCTGAAGTTGGGATCAAGGGTGTACATTTCAAGAATGTCGATTTACTGCGCGAAGAACTGTCATTGATGGGGGTTGACATTTCAACTGATGAAGATCAATAG

Protein sequence

>MS.gene058710.t1

MDTIVRDPFYKDIPEFFGMSFNELIDCKHPTSWIEFEKGLIDEAELERKFFKDGRDFDLQGLKTCMRNGYSYIEGVEQLLLALKKNNFEMHAFTNYPIWYQLIEDKLKLSKYLSWTFCSCTLGKRKPDTEFYKEVVRHLEVDPEYCIFIDDRPKNVQAAAEVGIKGVHFKNVDLLREELSLMGVDISTDEDQ