Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89859.t1 | XP_003611921.1 | 81.1 | 380 | 72 | 0 | 1 | 380 | 1 | 380 | 2.10E-156 | 562 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89859.t1 | A2XDK8 | 45.9 | 357 | 182 | 2 | 33 | 380 | 34 | 388 | 2.6e-70 | 267.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89859.t1 | G7KC47 | 81.1 | 380 | 72 | 0 | 1 | 380 | 1 | 380 | 1.5e-156 | 562.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene89859 | 0.802431 | 5.63E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene89859 | 0.811268 | 7.62E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene89859 | 0.807999 | 3.84E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene89859 | 0.803467 | 3.44E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene89859 | 0.802938 | 4.42E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene89859 | 0.81081 | 9.58E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene89859 | 0.805512 | 1.29E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene89859 | 0.802562 | 5.29E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene89859 | 0.803864 | 2.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89859.t1 | MTR_5g019430 | 95.789 | 380 | 16 | 0 | 1 | 380 | 1 | 380 | 0.0 | 741 |
| MS.gene89859.t1 | MTR_8g078100 | 70.557 | 377 | 106 | 2 | 1 | 377 | 1 | 372 | 3.82e-178 | 500 |
| MS.gene89859.t1 | MTR_4g069160 | 58.466 | 378 | 150 | 4 | 1 | 378 | 1 | 371 | 4.27e-140 | 403 |
| MS.gene89859.t1 | MTR_1g034480 | 54.907 | 377 | 160 | 3 | 1 | 377 | 1 | 367 | 4.94e-130 | 378 |
| MS.gene89859.t1 | MTR_3g011140 | 87.342 | 79 | 10 | 0 | 290 | 368 | 1 | 79 | 6.98e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89859.t1 | AT2G18630 | 52.618 | 382 | 176 | 4 | 1 | 380 | 2 | 380 | 1.09e-128 | 375 |
| MS.gene89859.t1 | AT2G18630 | 52.618 | 382 | 176 | 4 | 1 | 380 | 2 | 380 | 1.11e-128 | 375 |
| MS.gene89859.t1 | AT5G66675 | 50.649 | 385 | 180 | 4 | 4 | 380 | 15 | 397 | 1.56e-120 | 355 |
| MS.gene89859.t1 | AT5G66675 | 50.649 | 385 | 180 | 4 | 4 | 380 | 15 | 397 | 1.56e-120 | 355 |
| MS.gene89859.t1 | AT5G66675 | 50.649 | 385 | 180 | 4 | 4 | 380 | 15 | 397 | 1.56e-120 | 355 |
| MS.gene89859.t1 | AT5G66675 | 50.649 | 385 | 180 | 4 | 4 | 380 | 15 | 397 | 1.56e-120 | 355 |
| MS.gene89859.t1 | AT4G34320 | 54.474 | 380 | 157 | 6 | 1 | 378 | 1 | 366 | 4.33e-120 | 353 |
| MS.gene89859.t1 | AT4G34320 | 54.474 | 380 | 157 | 6 | 1 | 378 | 1 | 366 | 4.33e-120 | 353 |
| MS.gene89859.t1 | AT4G34330 | 48.000 | 350 | 164 | 4 | 27 | 376 | 17 | 348 | 2.00e-100 | 301 |
| MS.gene89859.t1 | AT5G66670 | 41.099 | 382 | 216 | 3 | 2 | 376 | 13 | 392 | 2.84e-90 | 278 |
| MS.gene89859.t1 | AT5G66670 | 41.099 | 382 | 216 | 3 | 2 | 376 | 13 | 392 | 2.84e-90 | 278 |
| MS.gene89859.t1 | AT5G66670 | 41.099 | 382 | 216 | 3 | 2 | 376 | 13 | 392 | 2.84e-90 | 278 |
| MS.gene89859.t1 | AT5G66670 | 41.099 | 382 | 216 | 3 | 2 | 376 | 13 | 392 | 2.84e-90 | 278 |
| MS.gene89859.t1 | AT5G66660 | 39.221 | 385 | 223 | 5 | 1 | 376 | 11 | 393 | 2.86e-80 | 251 |
| MS.gene89859.t1 | AT3G28290 | 28.877 | 374 | 237 | 9 | 27 | 375 | 11 | 380 | 1.74e-35 | 134 |
| MS.gene89859.t1 | AT3G28300 | 28.877 | 374 | 237 | 9 | 27 | 375 | 11 | 380 | 1.74e-35 | 134 |
| MS.gene89859.t1 | AT3G28270 | 28.889 | 360 | 238 | 7 | 31 | 375 | 16 | 372 | 1.71e-34 | 131 |
| MS.gene89859.t1 | AT3G28270 | 28.889 | 360 | 238 | 7 | 31 | 375 | 16 | 372 | 1.71e-34 | 131 |
| MS.gene89859.t1 | AT3G28320 | 25.159 | 314 | 212 | 8 | 83 | 375 | 2 | 313 | 6.29e-19 | 87.0 |
| MS.gene89859.t1 | AT3G57100 | 23.926 | 326 | 219 | 6 | 68 | 380 | 43 | 352 | 5.29e-18 | 84.7 |
Find 79 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATACGAGACAGCTTTAA+AGG | 0.201770 | 5.3:-11107659 | MS.gene89859:CDS |
| GCATCGAAGGATTGCAAGTT+TGG | 0.278688 | 5.3:+11108357 | None:intergenic |
| TTTGATGAAGAGGTTCAAAA+TGG | 0.309858 | 5.3:-11108030 | MS.gene89859:CDS |
| GGAAGTTGTCAAGGTCATTC+TGG | 0.348743 | 5.3:-11108217 | MS.gene89859:CDS |
| ATTAGAATTAGTCCCCTTGC+TGG | 0.351992 | 5.3:+11108467 | None:intergenic |
| ATCCTTCGATGCTACCATTC+AGG | 0.353874 | 5.3:-11108346 | MS.gene89859:CDS |
| GAATAAAATTCTTCAGTAAA+GGG | 0.368691 | 5.3:+11107943 | None:intergenic |
| CAATAGGCTCAGTTGGAAAA+TGG | 0.380390 | 5.3:-11107699 | MS.gene89859:CDS |
| CCTGTTGTAACAGCTTTGGC+AGG | 0.382385 | 5.3:-11107736 | MS.gene89859:CDS |
| TGGACTGCAAGCAAGATATA+TGG | 0.382413 | 5.3:-11108197 | MS.gene89859:CDS |
| AAAGACATTGAAAGGGCTTA+AGG | 0.390229 | 5.3:-11107986 | MS.gene89859:CDS |
| CCTGCCAAAGCTGTTACAAC+AGG | 0.393145 | 5.3:+11107736 | None:intergenic |
| CTCTCTTGCTCAAGGGATTG+AGG | 0.394697 | 5.3:-11108301 | MS.gene89859:CDS |
| GAATGACCTTGACAACTTCC+TGG | 0.395392 | 5.3:+11108220 | None:intergenic |
| AACAGCTTTGGCAGGGGCAT+TGG | 0.398944 | 5.3:-11107728 | MS.gene89859:CDS |
| CTTAAGGATTTCAAGGAAAC+CGG | 0.407846 | 5.3:-11107970 | MS.gene89859:CDS |
| CGAATAAAATTCTTCAGTAA+AGG | 0.416129 | 5.3:+11107942 | None:intergenic |
| CACCCATTTGAATCGGTGTT+GGG | 0.419900 | 5.3:+11108436 | None:intergenic |
| GAAAGGGCTTAAGGATTTCA+AGG | 0.423867 | 5.3:-11107977 | MS.gene89859:CDS |
| TGTCCCAACACCGATTCAAA+TGG | 0.439699 | 5.3:-11108439 | MS.gene89859:CDS |
| CCTGTTGGTGCGCTCCTGAA+TGG | 0.441077 | 5.3:+11108332 | None:intergenic |
| TGGTGGATATGAATAACATT+CGG | 0.442086 | 5.3:-11107588 | MS.gene89859:CDS |
| GTTCATGTCGAGAAGACTTC+CGG | 0.442461 | 5.3:+11108242 | None:intergenic |
| CCATTCAGGAGCGCACCAAC+AGG | 0.442576 | 5.3:-11108332 | MS.gene89859:CDS |
| GGGGCATTGGCTGTTCCAAT+AGG | 0.449406 | 5.3:-11107715 | MS.gene89859:CDS |
| GGTGGATATGAATAACATTC+GGG | 0.452854 | 5.3:-11107587 | MS.gene89859:CDS |
| AAATACGAGACAGCTTTAAA+GGG | 0.454834 | 5.3:-11107658 | MS.gene89859:CDS |
| TCGTGACTTGTTCTCCTTGG+TGG | 0.458271 | 5.3:-11108163 | MS.gene89859:CDS |
| CATTACAAAACTCCAATGTC+TGG | 0.460870 | 5.3:+11108118 | None:intergenic |
| GAAAATAAAGATTGAATCCA+TGG | 0.463994 | 5.3:-11107548 | MS.gene89859:CDS |
| TTCTTCAGTAAAGGGGTCCC+CGG | 0.472017 | 5.3:+11107951 | None:intergenic |
| GAGGTTCAAAATGGAGTTGA+AGG | 0.475155 | 5.3:-11108021 | MS.gene89859:CDS |
| GGATCGTGACTTGTTCTCCT+TGG | 0.484403 | 5.3:-11108166 | MS.gene89859:CDS |
| CTGTTGTAACAGCTTTGGCA+GGG | 0.485120 | 5.3:-11107735 | MS.gene89859:CDS |
| TGACTTGTTCTCCTTGGTGG+AGG | 0.486659 | 5.3:-11108160 | MS.gene89859:CDS |
| ACTTATGTAAAGACATTGAA+AGG | 0.496650 | 5.3:-11107994 | MS.gene89859:CDS |
| CGAGAATAGTCTCCAGACAT+TGG | 0.503949 | 5.3:-11108130 | MS.gene89859:CDS |
| GCTGTTCCAATAGGCTCAGT+TGG | 0.506013 | 5.3:-11107706 | MS.gene89859:CDS |
| TGTTGTAACAGCTTTGGCAG+GGG | 0.510574 | 5.3:-11107734 | MS.gene89859:CDS |
| ATGGGAGGTCAGTCCAGCAA+GGG | 0.512900 | 5.3:-11108480 | MS.gene89859:CDS |
| GTCCCAACACCGATTCAAAT+GGG | 0.524166 | 5.3:-11108438 | MS.gene89859:CDS |
| GCCAAAGCTGTTACAACAGG+GGG | 0.524847 | 5.3:+11107739 | None:intergenic |
| GAGTCACTAGGAGAAGTTAC+CGG | 0.525494 | 5.3:-11108261 | MS.gene89859:CDS |
| CTCCTGAATGGTAGCATCGA+AGG | 0.528207 | 5.3:+11108344 | None:intergenic |
| AGCTGATCAATGTAGTAGGC+AGG | 0.528656 | 5.3:-11107413 | MS.gene89859:CDS |
| GAATGCGCACCCATTTGAAT+CGG | 0.533513 | 5.3:+11108429 | None:intergenic |
| GCACCCATTTGAATCGGTGT+TGG | 0.536554 | 5.3:+11108435 | None:intergenic |
| GTGATCAACTCTCTTGCTCA+AGG | 0.543035 | 5.3:-11108309 | MS.gene89859:CDS |
| TGCAAGCTGATCAATGTAGT+AGG | 0.543984 | 5.3:-11107417 | MS.gene89859:CDS |
| GTTATCATTTCAATGCATGT+TGG | 0.551745 | 5.3:-11107625 | MS.gene89859:CDS |
| CTTATGTAAAGACATTGAAA+GGG | 0.557546 | 5.3:-11107993 | MS.gene89859:CDS |
| TCTATATCGCTTGAGTCACT+AGG | 0.561891 | 5.3:-11108273 | MS.gene89859:CDS |
| AAGTCTTCTCGACATGAACC+AGG | 0.568362 | 5.3:-11108238 | MS.gene89859:CDS |
| ATCAATGTAGTAGGCAGGCT+AGG | 0.571773 | 5.3:-11107408 | MS.gene89859:CDS |
| CTGCCAAAGCTGTTACAACA+GGG | 0.573595 | 5.3:+11107737 | None:intergenic |
| AATAAAATTCTTCAGTAAAG+GGG | 0.573615 | 5.3:+11107944 | None:intergenic |
| GTAGGCAGGCTAGGAAAGCA+AGG | 0.576577 | 5.3:-11107399 | MS.gene89859:CDS |
| GATGGGAGGTCAGTCCAGCA+AGG | 0.580437 | 5.3:-11108481 | MS.gene89859:CDS |
| TTGAAATGATAACTTCTCGT+TGG | 0.583800 | 5.3:+11107635 | None:intergenic |
| GCAAGATATATGGAACAAGA+AGG | 0.585118 | 5.3:-11108187 | MS.gene89859:CDS |
| TGGGAGGTCAGTCCAGCAAG+GGG | 0.595429 | 5.3:-11108479 | MS.gene89859:CDS |
| TTAAGGATTTCAAGGAAACC+GGG | 0.601773 | 5.3:-11107969 | MS.gene89859:CDS |
| AAGAGAGTTGATCACCCTGT+TGG | 0.602591 | 5.3:+11108317 | None:intergenic |
| ATCTCACAAGAGATTGAAGA+GGG | 0.605669 | 5.3:-11107836 | MS.gene89859:CDS |
| TGATCAACTCTCTTGCTCAA+GGG | 0.622317 | 5.3:-11108308 | MS.gene89859:CDS |
| CATGAACCAGGAAGTTGTCA+AGG | 0.624194 | 5.3:-11108226 | MS.gene89859:CDS |
| GACTGTGAAATTGGGATGGG+AGG | 0.630082 | 5.3:-11108495 | None:intergenic |
| CAAAGCTGTTACAACAGGGG+GGG | 0.635120 | 5.3:+11107741 | None:intergenic |
| TGTTGGTACTAAAATTGCAC+TGG | 0.637667 | 5.3:-11107608 | MS.gene89859:CDS |
| AATCTCACAAGAGATTGAAG+AGG | 0.640781 | 5.3:-11107837 | MS.gene89859:CDS |
| CATTCAGGAGCGCACCAACA+GGG | 0.641177 | 5.3:-11108331 | MS.gene89859:CDS |
| GGGTGCGCATTCTCTTTATG+CGG | 0.642050 | 5.3:-11108418 | MS.gene89859:CDS |
| TGGTACTAAAATTGCACTGG+TGG | 0.644582 | 5.3:-11107605 | MS.gene89859:CDS |
| AGGTTCAAAATGGAGTTGAA+GGG | 0.659181 | 5.3:-11108020 | MS.gene89859:CDS |
| AAAATCAGCAGTTTGCACCA+TGG | 0.662189 | 5.3:+11107531 | None:intergenic |
| TGCCAAAGCTGTTACAACAG+GGG | 0.670839 | 5.3:+11107738 | None:intergenic |
| CCAAAGCTGTTACAACAGGG+GGG | 0.689883 | 5.3:+11107740 | None:intergenic |
| GGCTAGGAAAGCAAGGACAG+TGG | 0.694536 | 5.3:-11107392 | MS.gene89859:CDS |
| TAAGGATTTCAAGGAAACCG+GGG | 0.696914 | 5.3:-11107968 | MS.gene89859:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTCTTCAGTAAAG+GGG | + | chr5.3:11107899-11107918 | None:intergenic | 20.0% |
| !! | GAATAAAATTCTTCAGTAAA+GGG | + | chr5.3:11107900-11107919 | None:intergenic | 20.0% |
| ! | ACTTATGTAAAGACATTGAA+AGG | - | chr5.3:11107846-11107865 | MS.gene89859:CDS | 25.0% |
| ! | CGAATAAAATTCTTCAGTAA+AGG | + | chr5.3:11107901-11107920 | None:intergenic | 25.0% |
| ! | CTTATGTAAAGACATTGAAA+GGG | - | chr5.3:11107847-11107866 | MS.gene89859:CDS | 25.0% |
| ! | GAAAATAAAGATTGAATCCA+TGG | - | chr5.3:11108292-11108311 | MS.gene89859:CDS | 25.0% |
| !!! | ATTTTATTCGTTGTTTCAGT+CGG | - | chr5.3:11107911-11107930 | MS.gene89859:CDS | 25.0% |
| GTTATCATTTCAATGCATGT+TGG | - | chr5.3:11108215-11108234 | MS.gene89859:CDS | 30.0% | |
| TTGAAATGATAACTTCTCGT+TGG | + | chr5.3:11108208-11108227 | None:intergenic | 30.0% | |
| TTTGATGAAGAGGTTCAAAA+TGG | - | chr5.3:11107810-11107829 | MS.gene89859:CDS | 30.0% | |
| ! | TGGTGGATATGAATAACATT+CGG | - | chr5.3:11108252-11108271 | MS.gene89859:CDS | 30.0% |
| !! | AAATACGAGACAGCTTTAAA+GGG | - | chr5.3:11108182-11108201 | MS.gene89859:CDS | 30.0% |
| !!! | AATGACTTGTTTTGATGAAG+AGG | - | chr5.3:11107800-11107819 | MS.gene89859:CDS | 30.0% |
| AAAGACATTGAAAGGGCTTA+AGG | - | chr5.3:11107854-11107873 | MS.gene89859:CDS | 35.0% | |
| AATCTCACAAGAGATTGAAG+AGG | - | chr5.3:11108003-11108022 | MS.gene89859:CDS | 35.0% | |
| AGGTTCAAAATGGAGTTGAA+GGG | - | chr5.3:11107820-11107839 | MS.gene89859:CDS | 35.0% | |
| ATCTCACAAGAGATTGAAGA+GGG | - | chr5.3:11108004-11108023 | MS.gene89859:CDS | 35.0% | |
| CATTACAAAACTCCAATGTC+TGG | + | chr5.3:11107725-11107744 | None:intergenic | 35.0% | |
| CTTAAGGATTTCAAGGAAAC+CGG | - | chr5.3:11107870-11107889 | MS.gene89859:CDS | 35.0% | |
| GCAAGATATATGGAACAAGA+AGG | - | chr5.3:11107653-11107672 | MS.gene89859:CDS | 35.0% | |
| GGTGGATATGAATAACATTC+GGG | - | chr5.3:11108253-11108272 | MS.gene89859:CDS | 35.0% | |
| TGTTGGTACTAAAATTGCAC+TGG | - | chr5.3:11108232-11108251 | MS.gene89859:CDS | 35.0% | |
| TTAAGGATTTCAAGGAAACC+GGG | - | chr5.3:11107871-11107890 | MS.gene89859:CDS | 35.0% | |
| ! | GAAATACGAGACAGCTTTAA+AGG | - | chr5.3:11108181-11108200 | MS.gene89859:CDS | 35.0% |
| ! | TGATTTTGCTCTTGGAAATG+AGG | - | chr5.3:11108325-11108344 | MS.gene89859:CDS | 35.0% |
| !!! | TGTAGCTGTGTTGATTTTCT+CGG | - | chr5.3:11108055-11108074 | MS.gene89859:CDS | 35.0% |
| AAAATCAGCAGTTTGCACCA+TGG | + | chr5.3:11108312-11108331 | None:intergenic | 40.0% | |
| ATTAGAATTAGTCCCCTTGC+TGG | + | chr5.3:11107376-11107395 | None:intergenic | 40.0% | |
| CAATAGGCTCAGTTGGAAAA+TGG | - | chr5.3:11108141-11108160 | MS.gene89859:CDS | 40.0% | |
| GAAAGGGCTTAAGGATTTCA+AGG | - | chr5.3:11107863-11107882 | MS.gene89859:CDS | 40.0% | |
| GAGGTTCAAAATGGAGTTGA+AGG | - | chr5.3:11107819-11107838 | MS.gene89859:CDS | 40.0% | |
| TAAGGATTTCAAGGAAACCG+GGG | - | chr5.3:11107872-11107891 | MS.gene89859:CDS | 40.0% | |
| TCTATATCGCTTGAGTCACT+AGG | - | chr5.3:11107567-11107586 | MS.gene89859:CDS | 40.0% | |
| TGATCAACTCTCTTGCTCAA+GGG | - | chr5.3:11107532-11107551 | MS.gene89859:CDS | 40.0% | |
| TGCAAGCTGATCAATGTAGT+AGG | - | chr5.3:11108423-11108442 | MS.gene89859:CDS | 40.0% | |
| TGGACTGCAAGCAAGATATA+TGG | - | chr5.3:11107643-11107662 | MS.gene89859:CDS | 40.0% | |
| TGGTACTAAAATTGCACTGG+TGG | - | chr5.3:11108235-11108254 | MS.gene89859:CDS | 40.0% | |
| ! | CATTTTCCAACTGAGCCTAT+TGG | + | chr5.3:11108143-11108162 | None:intergenic | 40.0% |
| !!! | CAAACTGCTGATTTTGCTCT+TGG | - | chr5.3:11108317-11108336 | MS.gene89859:CDS | 40.0% |
| AAGTCTTCTCGACATGAACC+AGG | - | chr5.3:11107602-11107621 | MS.gene89859:CDS | 45.0% | |
| AGCTGATCAATGTAGTAGGC+AGG | - | chr5.3:11108427-11108446 | MS.gene89859:CDS | 45.0% | |
| ATCAATGTAGTAGGCAGGCT+AGG | - | chr5.3:11108432-11108451 | MS.gene89859:CDS | 45.0% | |
| ATCCTTCGATGCTACCATTC+AGG | - | chr5.3:11107494-11107513 | MS.gene89859:CDS | 45.0% | |
| CATGAACCAGGAAGTTGTCA+AGG | - | chr5.3:11107614-11107633 | MS.gene89859:CDS | 45.0% | |
| CGAGAATAGTCTCCAGACAT+TGG | - | chr5.3:11107710-11107729 | MS.gene89859:CDS | 45.0% | |
| CTCGAAAAAATCCTCCACCA+AGG | + | chr5.3:11107694-11107713 | None:intergenic | 45.0% | |
| CTGCCAAAGCTGTTACAACA+GGG | + | chr5.3:11108106-11108125 | None:intergenic | 45.0% | |
| GAATGACCTTGACAACTTCC+TGG | + | chr5.3:11107623-11107642 | None:intergenic | 45.0% | |
| GAATGCGCACCCATTTGAAT+CGG | + | chr5.3:11107414-11107433 | None:intergenic | 45.0% | |
| GAGTCACTAGGAGAAGTTAC+CGG | - | chr5.3:11107579-11107598 | MS.gene89859:CDS | 45.0% | |
| GCATCGAAGGATTGCAAGTT+TGG | + | chr5.3:11107486-11107505 | None:intergenic | 45.0% | |
| GGAAGTTGTCAAGGTCATTC+TGG | - | chr5.3:11107623-11107642 | MS.gene89859:CDS | 45.0% | |
| GTGATCAACTCTCTTGCTCA+AGG | - | chr5.3:11107531-11107550 | MS.gene89859:CDS | 45.0% | |
| GTTCATGTCGAGAAGACTTC+CGG | + | chr5.3:11107601-11107620 | None:intergenic | 45.0% | |
| TGCCAAAGCTGTTACAACAG+GGG | + | chr5.3:11108105-11108124 | None:intergenic | 45.0% | |
| ! | AAGAGAGTTGATCACCCTGT+TGG | + | chr5.3:11107526-11107545 | None:intergenic | 45.0% |
| ! | CACCCATTTGAATCGGTGTT+GGG | + | chr5.3:11107407-11107426 | None:intergenic | 45.0% |
| ! | CTGTTGTAACAGCTTTGGCA+GGG | - | chr5.3:11108105-11108124 | MS.gene89859:CDS | 45.0% |
| ! | TGTTGTAACAGCTTTGGCAG+GGG | - | chr5.3:11108106-11108125 | MS.gene89859:CDS | 45.0% |
| !! | GTCCCAACACCGATTCAAAT+GGG | - | chr5.3:11107402-11107421 | MS.gene89859:CDS | 45.0% |
| !! | TGTCCCAACACCGATTCAAA+TGG | - | chr5.3:11107401-11107420 | MS.gene89859:CDS | 45.0% |
| !!! | AGCTGTGTTGATTTTCTCGG+TGG | - | chr5.3:11108058-11108077 | MS.gene89859:CDS | 45.0% |
| !!! | TGTGTTGATTTTCTCGGTGG+TGG | - | chr5.3:11108061-11108080 | MS.gene89859:CDS | 45.0% |
| CAAAGCTGTTACAACAGGGG+GGG | + | chr5.3:11108102-11108121 | None:intergenic | 50.0% | |
| CCAAAGCTGTTACAACAGGG+GGG | + | chr5.3:11108103-11108122 | None:intergenic | 50.0% | |
| CCTGCCAAAGCTGTTACAAC+AGG | + | chr5.3:11108107-11108126 | None:intergenic | 50.0% | |
| CTCTCTTGCTCAAGGGATTG+AGG | - | chr5.3:11107539-11107558 | MS.gene89859:CDS | 50.0% | |
| GCACCCATTTGAATCGGTGT+TGG | + | chr5.3:11107408-11107427 | None:intergenic | 50.0% | |
| GCCAAAGCTGTTACAACAGG+GGG | + | chr5.3:11108104-11108123 | None:intergenic | 50.0% | |
| GCTGTTCCAATAGGCTCAGT+TGG | - | chr5.3:11108134-11108153 | MS.gene89859:CDS | 50.0% | |
| GGGTGCGCATTCTCTTTATG+CGG | - | chr5.3:11107422-11107441 | MS.gene89859:CDS | 50.0% | |
| TTCTTCAGTAAAGGGGTCCC+CGG | + | chr5.3:11107892-11107911 | None:intergenic | 50.0% | |
| ! | CCTGTTGTAACAGCTTTGGC+AGG | - | chr5.3:11108104-11108123 | MS.gene89859:CDS | 50.0% |
| ! | CTCCTGAATGGTAGCATCGA+AGG | + | chr5.3:11107499-11107518 | None:intergenic | 50.0% |
| !! | AGCGCGCGAAAAACTTGTTG+CGG | - | chr5.3:11107767-11107786 | MS.gene89859:CDS | 50.0% |
| !! | GGATCGTGACTTGTTCTCCT+TGG | - | chr5.3:11107674-11107693 | MS.gene89859:CDS | 50.0% |
| !! | TCGTGACTTGTTCTCCTTGG+TGG | - | chr5.3:11107677-11107696 | MS.gene89859:CDS | 50.0% |
| !! | TGACTTGTTCTCCTTGGTGG+AGG | - | chr5.3:11107680-11107699 | MS.gene89859:CDS | 50.0% |
| ATGGGAGGTCAGTCCAGCAA+GGG | - | chr5.3:11107360-11107379 | MS.gene89859:CDS | 55.0% | |
| CCCCCCTGTTGTAACAGCTT+TGG | - | chr5.3:11108100-11108119 | MS.gene89859:CDS | 55.0% | |
| GGCTAGGAAAGCAAGGACAG+TGG | - | chr5.3:11108448-11108467 | MS.gene89859:CDS | 55.0% | |
| GTAGGCAGGCTAGGAAAGCA+AGG | - | chr5.3:11108441-11108460 | MS.gene89859:CDS | 55.0% | |
| ! | AACAGCTTTGGCAGGGGCAT+TGG | - | chr5.3:11108112-11108131 | MS.gene89859:CDS | 55.0% |
| ! | CATTCAGGAGCGCACCAACA+GGG | - | chr5.3:11107509-11107528 | MS.gene89859:CDS | 55.0% |
| !! | GGGGCATTGGCTGTTCCAAT+AGG | - | chr5.3:11108125-11108144 | MS.gene89859:CDS | 55.0% |
| CCTGTTGGTGCGCTCCTGAA+TGG | + | chr5.3:11107511-11107530 | None:intergenic | 60.0% | |
| TGGGAGGTCAGTCCAGCAAG+GGG | - | chr5.3:11107361-11107380 | MS.gene89859:CDS | 60.0% | |
| ! | CCATTCAGGAGCGCACCAAC+AGG | - | chr5.3:11107508-11107527 | MS.gene89859:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 11107360 | 11108502 | 11107360 | ID=MS.gene89859 |
| chr5.3 | mRNA | 11107360 | 11108502 | 11107360 | ID=MS.gene89859.t1;Parent=MS.gene89859 |
| chr5.3 | exon | 11107360 | 11108502 | 11107360 | ID=MS.gene89859.t1.exon1;Parent=MS.gene89859.t1 |
| chr5.3 | CDS | 11107360 | 11108502 | 11107360 | ID=cds.MS.gene89859.t1;Parent=MS.gene89859.t1 |
| Gene Sequence |
| Protein sequence |
