Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90267.t1 | XP_003608341.1 | 96.6 | 524 | 18 | 0 | 7 | 530 | 6 | 529 | 5.70E-277 | 963 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90267.t1 | P49295 | 73.1 | 468 | 125 | 1 | 63 | 530 | 76 | 542 | 1.7e-192 | 673.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90267.t1 | G7JU04 | 96.6 | 524 | 18 | 0 | 7 | 530 | 6 | 529 | 4.1e-277 | 963.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052083 | MS.gene90267 | 0.800812 | 1.21E-48 | -1.69E-46 |
| MS.gene053625 | MS.gene90267 | 0.895779 | 6.93E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90267.t1 | MTR_4g092820 | 96.198 | 526 | 20 | 0 | 5 | 530 | 4 | 529 | 0.0 | 1037 |
| MS.gene90267.t1 | MTR_3g111190 | 66.281 | 519 | 169 | 4 | 14 | 530 | 17 | 531 | 0.0 | 699 |
| MS.gene90267.t1 | MTR_5g067410 | 70.323 | 465 | 136 | 2 | 63 | 525 | 73 | 537 | 0.0 | 673 |
| MS.gene90267.t1 | MTR_3g111190 | 69.885 | 435 | 130 | 1 | 97 | 530 | 1 | 435 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90267.t1 | AT1G58290 | 71.367 | 461 | 125 | 3 | 65 | 522 | 79 | 535 | 0.0 | 667 |
| MS.gene90267.t1 | AT1G09940 | 70.450 | 467 | 131 | 4 | 63 | 527 | 68 | 529 | 0.0 | 661 |
| MS.gene90267.t1 | AT2G31250 | 61.720 | 465 | 165 | 7 | 68 | 527 | 67 | 523 | 0.0 | 545 |
Find 128 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGTGCATTTGGGAATTT+TGG | 0.112763 | 4.2:+20283047 | None:intergenic |
| GATGCTAGGGTGTTGGTAAT+TGG | 0.178842 | 4.2:-20281954 | MS.gene90267:CDS |
| GGTCTTGACTCCCTTGTTCT+TGG | 0.227585 | 4.2:-20282188 | MS.gene90267:CDS |
| TCAGATCTTGTTGTATAATA+AGG | 0.278776 | 4.2:-20282243 | MS.gene90267:CDS |
| TGGGGAGGGAATGTGGATTT+AGG | 0.284186 | 4.2:+20283090 | None:intergenic |
| AGCAATGTATGCCCTTAGTA+TGG | 0.288199 | 4.2:-20281355 | MS.gene90267:CDS |
| AAATTGAGCAGGGGAGAATT+TGG | 0.291856 | 4.2:+20283113 | None:intergenic |
| GTTAAACAAGTTGTTAAATC+TGG | 0.297055 | 4.2:-20282143 | MS.gene90267:CDS |
| ACTTGAGGCCACTGAGCTTC+TGG | 0.297366 | 4.2:+20282719 | None:intergenic |
| ATGCTAGGGTGTTGGTAATT+GGG | 0.306611 | 4.2:-20281953 | MS.gene90267:CDS |
| GAAGCTAGTGATTAAACATT+TGG | 0.322618 | 4.2:-20281916 | MS.gene90267:CDS |
| ATCAGAACGAAGGGTGCATT+TGG | 0.332400 | 4.2:+20283038 | None:intergenic |
| AAGCGTTCAGAGTCTTCTTT+TGG | 0.341676 | 4.2:-20281978 | MS.gene90267:CDS |
| GGTAATTGGGGCGGGGAAGA+TGG | 0.348702 | 4.2:-20281940 | MS.gene90267:CDS |
| GGAAGCACGGGGAATTATTC+AGG | 0.359513 | 4.2:-20281529 | MS.gene90267:CDS |
| GCTCTAAATTTCTTAATAGT+AGG | 0.365495 | 4.2:+20281459 | None:intergenic |
| TCAGTGGCCTCAAGTTATTC+AGG | 0.365530 | 4.2:-20282711 | MS.gene90267:CDS |
| GGCTATCTCTGTTGGAAAAC+GGG | 0.366509 | 4.2:-20282072 | MS.gene90267:CDS |
| GTAATTGGGGCGGGGAAGAT+GGG | 0.376026 | 4.2:-20281939 | MS.gene90267:CDS |
| GGAGCGAAGAGTGGCGGTGG+AGG | 0.392096 | 4.2:+20283140 | None:intergenic |
| ATTAAACATTTGGTTGCTAA+AGG | 0.398912 | 4.2:-20281906 | MS.gene90267:CDS |
| AGTTTCTCGCGCATCTCAAC+AGG | 0.404341 | 4.2:+20282749 | None:intergenic |
| AAGAGCAGCATAATTGTGAT+TGG | 0.413113 | 4.2:-20282791 | MS.gene90267:CDS |
| AAGAGAAAGTCAATGCCATT+AGG | 0.420004 | 4.2:-20281851 | MS.gene90267:CDS |
| CTTCTCACACCTTGGCCAAC+CGG | 0.420234 | 4.2:+20281690 | None:intergenic |
| TTCAAGCAGGCTATCTCTGT+TGG | 0.424603 | 4.2:-20282080 | MS.gene90267:CDS |
| GCGAAGAGTGGCGGTGGAGG+AGG | 0.425211 | 4.2:+20283143 | None:intergenic |
| ACGCCTGGATCCACGTTCCT+TGG | 0.425824 | 4.2:+20281642 | None:intergenic |
| GACTCCCTTGTTCTTGGAGA+AGG | 0.433930 | 4.2:-20282182 | MS.gene90267:CDS |
| ACAGAGACTAACATTTCGTC+TGG | 0.438749 | 4.2:-20282044 | MS.gene90267:CDS |
| GATCTCGAGAGGAGAAGGTT+TGG | 0.440833 | 4.2:+20282987 | None:intergenic |
| GCAATCTCAATGGCGGCTGC+AGG | 0.442620 | 4.2:-20283174 | None:intergenic |
| ATCTCAATGGCGGCTGCAGG+TGG | 0.446675 | 4.2:-20283171 | None:intergenic |
| TGAGACGGAAATATCATTGA+TGG | 0.449585 | 4.2:-20281214 | MS.gene90267:CDS |
| ATTGTGAATAAGCTACTTCA+TGG | 0.456488 | 4.2:-20281330 | MS.gene90267:CDS |
| AGGCTATCTCTGTTGGAAAA+CGG | 0.456584 | 4.2:-20282073 | MS.gene90267:CDS |
| TAATTGGGGCGGGGAAGATG+GGG | 0.457063 | 4.2:-20281938 | MS.gene90267:CDS |
| TTAAACATTTGGTTGCTAAA+GGG | 0.458547 | 4.2:-20281905 | MS.gene90267:CDS |
| ATCCTTCAACTCCTTCCTAA+TGG | 0.459263 | 4.2:+20281836 | None:intergenic |
| TCAGAACGAAGGGTGCATTT+GGG | 0.463289 | 4.2:+20283039 | None:intergenic |
| AAATCTGGACAAGGGGTGCC+AGG | 0.464157 | 4.2:-20282128 | MS.gene90267:CDS |
| GAGTCGATGGGGAGGGAATG+TGG | 0.465485 | 4.2:+20283083 | None:intergenic |
| TGCCATTAGGAAGGAGTTGA+AGG | 0.465860 | 4.2:-20281838 | MS.gene90267:CDS |
| TAGACCTCTTTCTGATATGA+TGG | 0.471217 | 4.2:-20281799 | MS.gene90267:CDS |
| TTCTCAAGTTCCGACACGCC+TGG | 0.475568 | 4.2:+20281627 | None:intergenic |
| GGAGGAATTGAATACATTTG+AGG | 0.476494 | 4.2:-20281508 | MS.gene90267:CDS |
| TATTCACAATACCCATACTA+AGG | 0.478653 | 4.2:+20281343 | None:intergenic |
| GTGGATTTAGGAAATTGAGC+AGG | 0.482754 | 4.2:+20283102 | None:intergenic |
| AGAAAAGATCAGAGTCAAGA+TGG | 0.484888 | 4.2:-20281190 | MS.gene90267:CDS |
| AATTTAGAGCTTATGTTGAA+AGG | 0.485422 | 4.2:-20281446 | MS.gene90267:CDS |
| TAGGGTGTTGGTAATTGGGG+CGG | 0.485807 | 4.2:-20281949 | MS.gene90267:CDS |
| TTTCTTACTGTCAGCTGAAG+AGG | 0.489860 | 4.2:+20282957 | None:intergenic |
| TTCTGTTAGTTCAGCTGCTG+TGG | 0.490414 | 4.2:-20282015 | MS.gene90267:CDS |
| GAACGTGGAGATTCTTCCTC+CGG | 0.497442 | 4.2:-20281709 | MS.gene90267:CDS |
| ATTCCAAGGAACGTGGATCC+AGG | 0.507096 | 4.2:-20281645 | MS.gene90267:CDS |
| AATAAGTGGTTTGTTCAAGC+AGG | 0.508112 | 4.2:-20282093 | MS.gene90267:CDS |
| AGGGTGTTGGTAATTGGGGC+GGG | 0.514106 | 4.2:-20281948 | MS.gene90267:CDS |
| GAGGCTGATGTGATCTTCAC+TGG | 0.518849 | 4.2:-20281765 | MS.gene90267:CDS |
| TAGTTCAGCTGCTGTGGAGT+TGG | 0.523446 | 4.2:-20282009 | MS.gene90267:CDS |
| AAGGATTAGAGCTTCTGAGC+TGG | 0.524082 | 4.2:-20281427 | MS.gene90267:CDS |
| ACAGAAAGCTATGGAAGCAC+GGG | 0.524843 | 4.2:-20281541 | MS.gene90267:CDS |
| GACTAACATTTCGTCTGGGT+CGG | 0.525209 | 4.2:-20282039 | MS.gene90267:CDS |
| ATCTGATGTTTAGAAATCTC+AGG | 0.527073 | 4.2:+20282260 | None:intergenic |
| TTGGCCAAGGTGTGAGAAGA+CGG | 0.528492 | 4.2:-20281686 | MS.gene90267:CDS |
| TTAAGGATCTCGAGAGGAGA+AGG | 0.534319 | 4.2:+20282982 | None:intergenic |
| GGAGGAGCGAAGAGTGGCGG+TGG | 0.538915 | 4.2:+20283137 | None:intergenic |
| GTGTTAGAGAAGTCACTGAT+TGG | 0.544478 | 4.2:-20282595 | MS.gene90267:CDS |
| TGGATTTAGGAAATTGAGCA+GGG | 0.546840 | 4.2:+20283103 | None:intergenic |
| GGATAGACAACAGAAAGCTA+TGG | 0.551254 | 4.2:-20281550 | MS.gene90267:CDS |
| CATTCCATCATATCAGAAAG+AGG | 0.552097 | 4.2:+20281795 | None:intergenic |
| TGCTAGGGTGTTGGTAATTG+GGG | 0.554231 | 4.2:-20281952 | MS.gene90267:CDS |
| ATTCTTCCTCCGGTTGGCCA+AGG | 0.557516 | 4.2:-20281699 | MS.gene90267:CDS |
| GTGGAGATTCTTCCTCCGGT+TGG | 0.559100 | 4.2:-20281705 | MS.gene90267:CDS |
| AACAGAAAGCTATGGAAGCA+CGG | 0.561734 | 4.2:-20281542 | MS.gene90267:CDS |
| TTGAGCAGGGGAGAATTTGG+CGG | 0.562147 | 4.2:+20283116 | None:intergenic |
| GAAAAGATCAGAGTCAAGAT+GGG | 0.562597 | 4.2:-20281189 | MS.gene90267:CDS |
| AGCAGGGGAGAATTTGGCGG+AGG | 0.563329 | 4.2:+20283119 | None:intergenic |
| CAAGTTGTTAAATCTGGACA+AGG | 0.563618 | 4.2:-20282137 | MS.gene90267:CDS |
| GGGTGTTAAAAGAGAGTCGA+TGG | 0.563812 | 4.2:+20283070 | None:intergenic |
| ATGGTCCTATGCAGCATCTG+AGG | 0.564451 | 4.2:-20281311 | MS.gene90267:CDS |
| GAAAGTCAATGCCATTAGGA+AGG | 0.565681 | 4.2:-20281847 | MS.gene90267:CDS |
| TCACACCTCAGATGCTGCAT+AGG | 0.570792 | 4.2:+20281306 | None:intergenic |
| TAAAAGAGAGTCGATGGGGA+GGG | 0.571739 | 4.2:+20283076 | None:intergenic |
| ATGCAGCATCTGAGGTGTGA+TGG | 0.572614 | 4.2:-20281303 | MS.gene90267:CDS |
| GGGTGTTGGTAATTGGGGCG+GGG | 0.573785 | 4.2:-20281947 | MS.gene90267:CDS |
| TCGTTGATATATCTATTCCA+AGG | 0.575192 | 4.2:-20281659 | MS.gene90267:CDS |
| GCAATGTATGCCCTTAGTAT+GGG | 0.576353 | 4.2:-20281354 | MS.gene90267:CDS |
| CATCTGTTTGAAGTAGCTGC+TGG | 0.577887 | 4.2:-20282209 | MS.gene90267:CDS |
| AGAAGTTGTTGATGCTAACA+AGG | 0.578083 | 4.2:-20281574 | MS.gene90267:CDS |
| ATGTTTAGAAATCTCAGGTA+CGG | 0.580762 | 4.2:+20282265 | None:intergenic |
| TTAAAAGAGAGTCGATGGGG+AGG | 0.584069 | 4.2:+20283075 | None:intergenic |
| TTTGACCTTCTCCAAGAACA+AGG | 0.584511 | 4.2:+20282177 | None:intergenic |
| TGCAGCATCTGAGGTGTGAT+GGG | 0.584786 | 4.2:-20281302 | MS.gene90267:CDS |
| GATGCGTGGTGACGTCTCGA+AGG | 0.587941 | 4.2:-20281388 | MS.gene90267:CDS |
| AATTGAATACATTTGAGGCG+TGG | 0.589108 | 4.2:-20281503 | MS.gene90267:CDS |
| AAGGAGATTATCAGAACGAA+GGG | 0.598177 | 4.2:+20283029 | None:intergenic |
| GGCGGAGGAGCGAAGAGTGG+CGG | 0.605304 | 4.2:+20283134 | None:intergenic |
| TAACACCGCGGTGTTGAGAG+AGG | 0.614922 | 4.2:+20282612 | None:intergenic |
| AACACCGCGGTGTTGAGAGA+GGG | 0.615162 | 4.2:+20282613 | None:intergenic |
| AGAGCCGTCTTCTCACACCT+TGG | 0.615615 | 4.2:+20281682 | None:intergenic |
| GATCAGAGTCAAGATGGGAA+AGG | 0.621872 | 4.2:-20281184 | MS.gene90267:CDS |
| TTTGGCGGAGGAGCGAAGAG+TGG | 0.622667 | 4.2:+20283131 | None:intergenic |
| ATTCACAATACCCATACTAA+GGG | 0.623282 | 4.2:+20281344 | None:intergenic |
| GGTGTTAAAAGAGAGTCGAT+GGG | 0.629384 | 4.2:+20283071 | None:intergenic |
| TATGATGGAATGTGCTGCTG+AGG | 0.629809 | 4.2:-20281784 | MS.gene90267:CDS |
| GAAGGAGATTATCAGAACGA+AGG | 0.635603 | 4.2:+20283028 | None:intergenic |
| CAGAGACTAACATTTCGTCT+GGG | 0.635999 | 4.2:-20282043 | MS.gene90267:CDS |
| AGTTGTTAAATCTGGACAAG+GGG | 0.636682 | 4.2:-20282135 | MS.gene90267:CDS |
| GAACGTGGATCCAGGCGTGT+CGG | 0.638878 | 4.2:-20281637 | MS.gene90267:CDS |
| AGTCACTGATTGGATCTCCA+AGG | 0.639826 | 4.2:-20282585 | MS.gene90267:intron |
| TACTTCAAACAGATGTTGTG+TGG | 0.642747 | 4.2:+20282217 | None:intergenic |
| TATATCTATTCCAAGGAACG+TGG | 0.651140 | 4.2:-20281652 | MS.gene90267:CDS |
| AAGTTGTTAAATCTGGACAA+GGG | 0.651987 | 4.2:-20282136 | MS.gene90267:CDS |
| CTCACACCTTGGCCAACCGG+AGG | 0.652057 | 4.2:+20281693 | None:intergenic |
| CAGAATGTATGATCTTGAGA+CGG | 0.654392 | 4.2:-20281229 | MS.gene90267:CDS |
| CATAACTCCTGAATAACTTG+AGG | 0.655387 | 4.2:+20282704 | None:intergenic |
| TTGACCTTCTCCAAGAACAA+GGG | 0.668022 | 4.2:+20282178 | None:intergenic |
| GTGTTAAAAGAGAGTCGATG+GGG | 0.677380 | 4.2:+20283072 | None:intergenic |
| TTGCAATTCCAGAAGCTCAG+TGG | 0.683759 | 4.2:-20282727 | MS.gene90267:CDS |
| AGCACGGGGAATTATTCAGG+AGG | 0.690702 | 4.2:-20281526 | MS.gene90267:CDS |
| GGTGTTGAGAGAGGGCAACA+AGG | 0.693165 | 4.2:+20282621 | None:intergenic |
| GGATTTAGGAAATTGAGCAG+GGG | 0.695899 | 4.2:+20283104 | None:intergenic |
| CAGAAAGCTATGGAAGCACG+GGG | 0.698718 | 4.2:-20281540 | MS.gene90267:CDS |
| AAATGTTTGTCAAAGATGCG+TGG | 0.708070 | 4.2:-20281402 | MS.gene90267:CDS |
| AGTTGTTGATGCTAACAAGG+AGG | 0.725440 | 4.2:-20281571 | MS.gene90267:CDS |
| GTTGCCCTCTCTCAACACCG+CGG | 0.747760 | 4.2:-20282617 | MS.gene90267:CDS |
| CAGTGACTTCTCTAACACCG+CGG | 0.783803 | 4.2:+20282600 | None:intergenic |
| GAATGCACTAGTGTACAATG+TGG | 0.788796 | 4.2:-20281607 | MS.gene90267:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACAACTTAT+AGG | - | chr4.2:20281473-20281492 | MS.gene90267:CDS | 10.0% |
| !! | AAAAAAAAAAACAACTTATA+GGG | - | chr4.2:20281474-20281493 | MS.gene90267:CDS | 10.0% |
| !!! | TATTATATTTTTACAGTTTA+GGG | - | chr4.2:20281917-20281936 | MS.gene90267:CDS | 10.0% |
| !!! | TTATTATATTTTTACAGTTT+AGG | - | chr4.2:20281916-20281935 | MS.gene90267:CDS | 10.0% |
| !! | ACTGTAAAAATATAATAAGT+AGG | + | chr4.2:20281914-20281933 | None:intergenic | 15.0% |
| !! | TAAATTGAATTGAATTGAAT+TGG | + | chr4.2:20281426-20281445 | None:intergenic | 15.0% |
| !! | TAAATTTGATGTATTCTATA+TGG | - | chr4.2:20281881-20281900 | MS.gene90267:CDS | 15.0% |
| !!! | TTTCTGTTTTTGTTTGTTTT+AGG | - | chr4.2:20281511-20281530 | MS.gene90267:CDS | 20.0% |
| ! | AATACATCAAATTTAGTCTC+TGG | + | chr4.2:20281876-20281895 | None:intergenic | 25.0% |
| ! | AGATATATGAATACATACCT+TGG | + | chr4.2:20281773-20281792 | None:intergenic | 25.0% |
| ! | ATTAAACATTTGGTTGCTAA+AGG | - | chr4.2:20282432-20282451 | MS.gene90267:intron | 25.0% |
| ! | GATGTATTCTATATGGTTTA+TGG | - | chr4.2:20281888-20281907 | MS.gene90267:CDS | 25.0% |
| ! | GTTAAACAAGTTGTTAAATC+TGG | - | chr4.2:20282195-20282214 | MS.gene90267:CDS | 25.0% |
| ! | TTAAACATTTGGTTGCTAAA+GGG | - | chr4.2:20282433-20282452 | MS.gene90267:intron | 25.0% |
| !! | AATTTAGAGCTTATGTTGAA+AGG | - | chr4.2:20282892-20282911 | MS.gene90267:intron | 25.0% |
| !! | GCTCTAAATTTCTTAATAGT+AGG | + | chr4.2:20282882-20282901 | None:intergenic | 25.0% |
| !! | TCAGATCTTGTTGTATAATA+AGG | - | chr4.2:20282095-20282114 | MS.gene90267:CDS | 25.0% |
| !!! | GTTCTCTTTTGAAAACAAAA+GGG | + | chr4.2:20282613-20282632 | None:intergenic | 25.0% |
| !!! | GTTTGTTTTAGGATATACAA+AGG | - | chr4.2:20281522-20281541 | MS.gene90267:CDS | 25.0% |
| AAGTTGTTAAATCTGGACAA+GGG | - | chr4.2:20282202-20282221 | MS.gene90267:CDS | 30.0% | |
| AATTGCAGGGATTAAATTGA+TGG | - | chr4.2:20281944-20281963 | MS.gene90267:CDS | 30.0% | |
| ATCTGATGTTTAGAAATCTC+AGG | + | chr4.2:20282081-20282100 | None:intergenic | 30.0% | |
| ATGTTTAGAAATCTCAGGTA+CGG | + | chr4.2:20282076-20282095 | None:intergenic | 30.0% | |
| ATTCACAATACCCATACTAA+GGG | + | chr4.2:20282997-20283016 | None:intergenic | 30.0% | |
| ATTGTGAATAAGCTACTTCA+TGG | - | chr4.2:20283008-20283027 | MS.gene90267:CDS | 30.0% | |
| GAAGCTAGTGATTAAACATT+TGG | - | chr4.2:20282422-20282441 | MS.gene90267:intron | 30.0% | |
| TATTCACAATACCCATACTA+AGG | + | chr4.2:20282998-20283017 | None:intergenic | 30.0% | |
| TCGTTGATATATCTATTCCA+AGG | - | chr4.2:20282679-20282698 | MS.gene90267:CDS | 30.0% | |
| TCTCTGGTATTAAGATCTTA+GGG | + | chr4.2:20281860-20281879 | None:intergenic | 30.0% | |
| ! | TGATGATTTTGCAGAAAAGT+GGG | - | chr4.2:20282046-20282065 | MS.gene90267:CDS | 30.0% |
| !! | CGTTCTCTTTTGAAAACAAA+AGG | + | chr4.2:20282614-20282633 | None:intergenic | 30.0% |
| !! | CTTATTTTCCTATCAAAACC+TGG | + | chr4.2:20282231-20282250 | None:intergenic | 30.0% |
| !! | GGTTTTGATAGGAAAATAAG+TGG | - | chr4.2:20282231-20282250 | MS.gene90267:CDS | 30.0% |
| !! | TTGATGATTTTGCAGAAAAG+TGG | - | chr4.2:20282045-20282064 | MS.gene90267:CDS | 30.0% |
| !! | TTTGTTTTCAAAAGAGAACG+TGG | - | chr4.2:20282614-20282633 | MS.gene90267:CDS | 30.0% |
| AAATGTTTGTCAAAGATGCG+TGG | - | chr4.2:20282936-20282955 | MS.gene90267:intron | 35.0% | |
| AAGAGAAAGTCAATGCCATT+AGG | - | chr4.2:20282487-20282506 | MS.gene90267:intron | 35.0% | |
| AAGAGCAGCATAATTGTGAT+TGG | - | chr4.2:20281547-20281566 | MS.gene90267:CDS | 35.0% | |
| AAGGAGATTATCAGAACGAA+GGG | + | chr4.2:20281312-20281331 | None:intergenic | 35.0% | |
| AGAAAAGATCAGAGTCAAGA+TGG | - | chr4.2:20283148-20283167 | MS.gene90267:CDS | 35.0% | |
| AGAAGTTGTTGATGCTAACA+AGG | - | chr4.2:20282764-20282783 | MS.gene90267:CDS | 35.0% | |
| AGTTGTTAAATCTGGACAAG+GGG | - | chr4.2:20282203-20282222 | MS.gene90267:CDS | 35.0% | |
| AGTTTAGGGACTAAATTGCA+GGG | - | chr4.2:20281931-20281950 | MS.gene90267:CDS | 35.0% | |
| ATACAGAGCAGAATGAAGAA+GGG | + | chr4.2:20281799-20281818 | None:intergenic | 35.0% | |
| CAAGTTGTTAAATCTGGACA+AGG | - | chr4.2:20282201-20282220 | MS.gene90267:CDS | 35.0% | |
| CAGAATGTATGATCTTGAGA+CGG | - | chr4.2:20283109-20283128 | MS.gene90267:CDS | 35.0% | |
| CATAACTCCTGAATAACTTG+AGG | + | chr4.2:20281637-20281656 | None:intergenic | 35.0% | |
| CATTCCATCATATCAGAAAG+AGG | + | chr4.2:20282546-20282565 | None:intergenic | 35.0% | |
| GAAAAGATCAGAGTCAAGAT+GGG | - | chr4.2:20283149-20283168 | MS.gene90267:CDS | 35.0% | |
| GATCTTAGGGACTAAATTGA+CGG | + | chr4.2:20281847-20281866 | None:intergenic | 35.0% | |
| GGAGGAATTGAATACATTTG+AGG | - | chr4.2:20282830-20282849 | MS.gene90267:intron | 35.0% | |
| GTCTCTGGTATTAAGATCTT+AGG | + | chr4.2:20281861-20281880 | None:intergenic | 35.0% | |
| TACTTCAAACAGATGTTGTG+TGG | + | chr4.2:20282124-20282143 | None:intergenic | 35.0% | |
| TAGACCTCTTTCTGATATGA+TGG | - | chr4.2:20282539-20282558 | MS.gene90267:intron | 35.0% | |
| TATATCTATTCCAAGGAACG+TGG | - | chr4.2:20282686-20282705 | MS.gene90267:CDS | 35.0% | |
| TGAGACGGAAATATCATTGA+TGG | - | chr4.2:20283124-20283143 | MS.gene90267:CDS | 35.0% | |
| TGGATTTAGGAAATTGAGCA+GGG | + | chr4.2:20281238-20281257 | None:intergenic | 35.0% | |
| ! | AATTGAATACATTTGAGGCG+TGG | - | chr4.2:20282835-20282854 | MS.gene90267:intron | 35.0% |
| ! | GATGATTTTGCAGAAAAGTG+GGG | - | chr4.2:20282047-20282066 | MS.gene90267:CDS | 35.0% |
| !! | AATAAGTGGTTTGTTCAAGC+AGG | - | chr4.2:20282245-20282264 | MS.gene90267:CDS | 35.0% |
| AAATTGAGCAGGGGAGAATT+TGG | + | chr4.2:20281228-20281247 | None:intergenic | 40.0% | |
| AACAGAAAGCTATGGAAGCA+CGG | - | chr4.2:20282796-20282815 | MS.gene90267:CDS | 40.0% | |
| ACAGAGACTAACATTTCGTC+TGG | - | chr4.2:20282294-20282313 | MS.gene90267:intron | 40.0% | |
| AGCAATGTATGCCCTTAGTA+TGG | - | chr4.2:20282983-20283002 | MS.gene90267:CDS | 40.0% | |
| AGGCTATCTCTGTTGGAAAA+CGG | - | chr4.2:20282265-20282284 | MS.gene90267:CDS | 40.0% | |
| AGTTGTTGATGCTAACAAGG+AGG | - | chr4.2:20282767-20282786 | MS.gene90267:CDS | 40.0% | |
| ATCCTTCAACTCCTTCCTAA+TGG | + | chr4.2:20282505-20282524 | None:intergenic | 40.0% | |
| CAGAGACTAACATTTCGTCT+GGG | - | chr4.2:20282295-20282314 | MS.gene90267:intron | 40.0% | |
| CAGTTTAGGGACTAAATTGC+AGG | - | chr4.2:20281930-20281949 | MS.gene90267:CDS | 40.0% | |
| CATACAGAGCAGAATGAAGA+AGG | + | chr4.2:20281800-20281819 | None:intergenic | 40.0% | |
| GAAAGTCAATGCCATTAGGA+AGG | - | chr4.2:20282491-20282510 | MS.gene90267:intron | 40.0% | |
| GAAGGAGATTATCAGAACGA+AGG | + | chr4.2:20281313-20281332 | None:intergenic | 40.0% | |
| GAATGCACTAGTGTACAATG+TGG | - | chr4.2:20282731-20282750 | MS.gene90267:CDS | 40.0% | |
| GCAATGTATGCCCTTAGTAT+GGG | - | chr4.2:20282984-20283003 | MS.gene90267:CDS | 40.0% | |
| GGATAGACAACAGAAAGCTA+TGG | - | chr4.2:20282788-20282807 | MS.gene90267:CDS | 40.0% | |
| GGATTTAGGAAATTGAGCAG+GGG | + | chr4.2:20281237-20281256 | None:intergenic | 40.0% | |
| GGTGTTAAAAGAGAGTCGAT+GGG | + | chr4.2:20281270-20281289 | None:intergenic | 40.0% | |
| GTGGATTTAGGAAATTGAGC+AGG | + | chr4.2:20281239-20281258 | None:intergenic | 40.0% | |
| GTGTTAAAAGAGAGTCGATG+GGG | + | chr4.2:20281269-20281288 | None:intergenic | 40.0% | |
| GTGTTAGAGAAGTCACTGAT+TGG | - | chr4.2:20281743-20281762 | MS.gene90267:CDS | 40.0% | |
| TTGACCTTCTCCAAGAACAA+GGG | + | chr4.2:20282163-20282182 | None:intergenic | 40.0% | |
| TTTCTTACTGTCAGCTGAAG+AGG | + | chr4.2:20281384-20281403 | None:intergenic | 40.0% | |
| TTTGACCTTCTCCAAGAACA+AGG | + | chr4.2:20282164-20282183 | None:intergenic | 40.0% | |
| ! | AAGCGTTCAGAGTCTTCTTT+TGG | - | chr4.2:20282360-20282379 | MS.gene90267:intron | 40.0% |
| ! | AGGGTGCATTTGGGAATTTT+GGG | + | chr4.2:20281293-20281312 | None:intergenic | 40.0% |
| ! | TGTCAGCTGAAGAGGTTTTA+AGG | + | chr4.2:20281376-20281395 | None:intergenic | 40.0% |
| ! | TTGGAAACGATGACGTTTTG+AGG | + | chr4.2:20281335-20281354 | None:intergenic | 40.0% |
| !! | AAGGGTGCATTTGGGAATTT+TGG | + | chr4.2:20281294-20281313 | None:intergenic | 40.0% |
| !! | ATGCTAGGGTGTTGGTAATT+GGG | - | chr4.2:20282385-20282404 | MS.gene90267:intron | 40.0% |
| !! | TGCTAAAGGGTGTCGAAAAA+TGG | - | chr4.2:20282446-20282465 | MS.gene90267:intron | 40.0% |
| !!! | AAACGATGACGTTTTGAGGA+AGG | + | chr4.2:20281331-20281350 | None:intergenic | 40.0% |
| !!! | AGTCTTCTTTTGGTGATGCT+AGG | - | chr4.2:20282370-20282389 | MS.gene90267:intron | 40.0% |
| !!! | GTCTTCTTTTGGTGATGCTA+GGG | - | chr4.2:20282371-20282390 | MS.gene90267:intron | 40.0% |
| AAGGATTAGAGCTTCTGAGC+TGG | - | chr4.2:20282911-20282930 | MS.gene90267:intron | 45.0% | |
| GACTAACATTTCGTCTGGGT+CGG | - | chr4.2:20282299-20282318 | MS.gene90267:intron | 45.0% | |
| GATCAGAGTCAAGATGGGAA+AGG | - | chr4.2:20283154-20283173 | MS.gene90267:CDS | 45.0% | |
| GGCTATCTCTGTTGGAAAAC+GGG | - | chr4.2:20282266-20282285 | MS.gene90267:CDS | 45.0% | |
| GGGTGTTAAAAGAGAGTCGA+TGG | + | chr4.2:20281271-20281290 | None:intergenic | 45.0% | |
| TAAAAGAGAGTCGATGGGGA+GGG | + | chr4.2:20281265-20281284 | None:intergenic | 45.0% | |
| TCAGTGGCCTCAAGTTATTC+AGG | - | chr4.2:20281627-20281646 | MS.gene90267:CDS | 45.0% | |
| TGCCATTAGGAAGGAGTTGA+AGG | - | chr4.2:20282500-20282519 | MS.gene90267:intron | 45.0% | |
| TTAAAAGAGAGTCGATGGGG+AGG | + | chr4.2:20281266-20281285 | None:intergenic | 45.0% | |
| TTAAGGATCTCGAGAGGAGA+AGG | + | chr4.2:20281359-20281378 | None:intergenic | 45.0% | |
| TTCAAGCAGGCTATCTCTGT+TGG | - | chr4.2:20282258-20282277 | MS.gene90267:CDS | 45.0% | |
| TTCTGTTAGTTCAGCTGCTG+TGG | - | chr4.2:20282323-20282342 | MS.gene90267:intron | 45.0% | |
| TTGCAATTCCAGAAGCTCAG+TGG | - | chr4.2:20281611-20281630 | MS.gene90267:CDS | 45.0% | |
| ! | ACAGAAAGCTATGGAAGCAC+GGG | - | chr4.2:20282797-20282816 | MS.gene90267:CDS | 45.0% |
| ! | AGTCACTGATTGGATCTCCA+AGG | - | chr4.2:20281753-20281772 | MS.gene90267:CDS | 45.0% |
| ! | ATCAGAACGAAGGGTGCATT+TGG | + | chr4.2:20281303-20281322 | None:intergenic | 45.0% |
| ! | CATCTGTTTGAAGTAGCTGC+TGG | - | chr4.2:20282129-20282148 | MS.gene90267:CDS | 45.0% |
| ! | GGGTGCATTTGGGAATTTTG+GGG | + | chr4.2:20281292-20281311 | None:intergenic | 45.0% |
| ! | GGTGCATTTGGGAATTTTGG+GGG | + | chr4.2:20281291-20281310 | None:intergenic | 45.0% |
| ! | TATGATGGAATGTGCTGCTG+AGG | - | chr4.2:20282554-20282573 | MS.gene90267:intron | 45.0% |
| ! | TCAGAACGAAGGGTGCATTT+GGG | + | chr4.2:20281302-20281321 | None:intergenic | 45.0% |
| !! | GATGCTAGGGTGTTGGTAAT+TGG | - | chr4.2:20282384-20282403 | MS.gene90267:intron | 45.0% |
| !! | TGAGAGCACGCATGTTTTCA+AGG | + | chr4.2:20283088-20283107 | None:intergenic | 45.0% |
| !! | TGCTAGGGTGTTGGTAATTG+GGG | - | chr4.2:20282386-20282405 | MS.gene90267:intron | 45.0% |
| !!! | GAGGTTTTAAGGATCTCGAG+AGG | + | chr4.2:20281365-20281384 | None:intergenic | 45.0% |
| !!! | TTTTGGTGATGCTAGGGTGT+TGG | - | chr4.2:20282377-20282396 | MS.gene90267:intron | 45.0% |
| AGCACGGGGAATTATTCAGG+AGG | - | chr4.2:20282812-20282831 | MS.gene90267:intron | 50.0% | |
| AGTTTCTCGCGCATCTCAAC+AGG | + | chr4.2:20281592-20281611 | None:intergenic | 50.0% | |
| ATGGTCCTATGCAGCATCTG+AGG | - | chr4.2:20283027-20283046 | MS.gene90267:CDS | 50.0% | |
| ATTCCAAGGAACGTGGATCC+AGG | - | chr4.2:20282693-20282712 | MS.gene90267:CDS | 50.0% | |
| CAGAGCAGAATGAAGAAGGG+TGG | + | chr4.2:20281796-20281815 | None:intergenic | 50.0% | |
| CAGTGACTTCTCTAACACCG+CGG | + | chr4.2:20281741-20281760 | None:intergenic | 50.0% | |
| GAACGTGGAGATTCTTCCTC+CGG | - | chr4.2:20282629-20282648 | MS.gene90267:CDS | 50.0% | |
| GACTCCCTTGTTCTTGGAGA+AGG | - | chr4.2:20282156-20282175 | MS.gene90267:CDS | 50.0% | |
| GAGGCTGATGTGATCTTCAC+TGG | - | chr4.2:20282573-20282592 | MS.gene90267:intron | 50.0% | |
| GATCTCGAGAGGAGAAGGTT+TGG | + | chr4.2:20281354-20281373 | None:intergenic | 50.0% | |
| GGTCTTGACTCCCTTGTTCT+TGG | - | chr4.2:20282150-20282169 | MS.gene90267:CDS | 50.0% | |
| TAGTTCAGCTGCTGTGGAGT+TGG | - | chr4.2:20282329-20282348 | MS.gene90267:intron | 50.0% | |
| TCACACCTCAGATGCTGCAT+AGG | + | chr4.2:20283035-20283054 | None:intergenic | 50.0% | |
| TGGGGAGGGAATGTGGATTT+AGG | + | chr4.2:20281251-20281270 | None:intergenic | 50.0% | |
| TTGAGCAGGGGAGAATTTGG+CGG | + | chr4.2:20281225-20281244 | None:intergenic | 50.0% | |
| TTGGCCAAGGTGTGAGAAGA+CGG | - | chr4.2:20282652-20282671 | MS.gene90267:CDS | 50.0% | |
| ! | ATGCAGCATCTGAGGTGTGA+TGG | - | chr4.2:20283035-20283054 | MS.gene90267:CDS | 50.0% |
| ! | CAGAAAGCTATGGAAGCACG+GGG | - | chr4.2:20282798-20282817 | MS.gene90267:CDS | 50.0% |
| ! | GGAAGCACGGGGAATTATTC+AGG | - | chr4.2:20282809-20282828 | MS.gene90267:intron | 50.0% |
| ! | TGCAGCATCTGAGGTGTGAT+GGG | - | chr4.2:20283036-20283055 | MS.gene90267:CDS | 50.0% |
| !! | TAGGGTGTTGGTAATTGGGG+CGG | - | chr4.2:20282389-20282408 | MS.gene90267:intron | 50.0% |
| !!! | AAGGGGTGCCAGGTTTTGAT+AGG | - | chr4.2:20282220-20282239 | MS.gene90267:CDS | 50.0% |
| ACTTGAGGCCACTGAGCTTC+TGG | + | chr4.2:20281622-20281641 | None:intergenic | 55.0% | |
| AGAGCCGTCTTCTCACACCT+TGG | + | chr4.2:20282659-20282678 | None:intergenic | 55.0% | |
| CTTCTCACACCTTGGCCAAC+CGG | + | chr4.2:20282651-20282670 | None:intergenic | 55.0% | |
| GTAATTGGGGCGGGGAAGAT+GGG | - | chr4.2:20282399-20282418 | MS.gene90267:intron | 55.0% | |
| GTGGAGATTCTTCCTCCGGT+TGG | - | chr4.2:20282633-20282652 | MS.gene90267:CDS | 55.0% | |
| TAATTGGGGCGGGGAAGATG+GGG | - | chr4.2:20282400-20282419 | MS.gene90267:intron | 55.0% | |
| TTCTCAAGTTCCGACACGCC+TGG | + | chr4.2:20282714-20282733 | None:intergenic | 55.0% | |
| ! | AACACCGCGGTGTTGAGAGA+GGG | + | chr4.2:20281728-20281747 | None:intergenic | 55.0% |
| ! | ATTCTTCCTCCGGTTGGCCA+AGG | - | chr4.2:20282639-20282658 | MS.gene90267:CDS | 55.0% |
| ! | GGTGTTGAGAGAGGGCAACA+AGG | + | chr4.2:20281720-20281739 | None:intergenic | 55.0% |
| ! | TAACACCGCGGTGTTGAGAG+AGG | + | chr4.2:20281729-20281748 | None:intergenic | 55.0% |
| !! | AAATCTGGACAAGGGGTGCC+AGG | - | chr4.2:20282210-20282229 | MS.gene90267:CDS | 55.0% |
| !! | AGGGTGTTGGTAATTGGGGC+GGG | - | chr4.2:20282390-20282409 | MS.gene90267:intron | 55.0% |
| ACGCCTGGATCCACGTTCCT+TGG | + | chr4.2:20282699-20282718 | None:intergenic | 60.0% | |
| AGCAGGGGAGAATTTGGCGG+AGG | + | chr4.2:20281222-20281241 | None:intergenic | 60.0% | |
| GAACGTGGATCCAGGCGTGT+CGG | - | chr4.2:20282701-20282720 | MS.gene90267:CDS | 60.0% | |
| GAGTCGATGGGGAGGGAATG+TGG | + | chr4.2:20281258-20281277 | None:intergenic | 60.0% | |
| GGTAATTGGGGCGGGGAAGA+TGG | - | chr4.2:20282398-20282417 | MS.gene90267:intron | 60.0% | |
| GTTGCCCTCTCTCAACACCG+CGG | - | chr4.2:20281721-20281740 | MS.gene90267:CDS | 60.0% | |
| TTTGGCGGAGGAGCGAAGAG+TGG | + | chr4.2:20281210-20281229 | None:intergenic | 60.0% | |
| ! | GATGCGTGGTGACGTCTCGA+AGG | - | chr4.2:20282950-20282969 | MS.gene90267:intron | 60.0% |
| !! | GGGTGTTGGTAATTGGGGCG+GGG | - | chr4.2:20282391-20282410 | MS.gene90267:intron | 60.0% |
| CTCACACCTTGGCCAACCGG+AGG | + | chr4.2:20282648-20282667 | None:intergenic | 65.0% | |
| GCGAAGAGTGGCGGTGGAGG+AGG | + | chr4.2:20281198-20281217 | None:intergenic | 70.0% | |
| GGAGCGAAGAGTGGCGGTGG+AGG | + | chr4.2:20281201-20281220 | None:intergenic | 70.0% | |
| GGAGGAGCGAAGAGTGGCGG+TGG | + | chr4.2:20281204-20281223 | None:intergenic | 70.0% | |
| GGCGGAGGAGCGAAGAGTGG+CGG | + | chr4.2:20281207-20281226 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 20281173 | 20283187 | 20281173 | ID=MS.gene90267 |
| chr4.2 | mRNA | 20281173 | 20283187 | 20281173 | ID=MS.gene90267.t1;Parent=MS.gene90267 |
| chr4.2 | exon | 20282965 | 20283187 | 20282965 | ID=MS.gene90267.t1.exon1;Parent=MS.gene90267.t1 |
| chr4.2 | CDS | 20282965 | 20283187 | 20282965 | ID=cds.MS.gene90267.t1;Parent=MS.gene90267.t1 |
| chr4.2 | exon | 20282586 | 20282827 | 20282586 | ID=MS.gene90267.t1.exon2;Parent=MS.gene90267.t1 |
| chr4.2 | CDS | 20282586 | 20282827 | 20282586 | ID=cds.MS.gene90267.t1;Parent=MS.gene90267.t1 |
| chr4.2 | exon | 20281173 | 20282300 | 20281173 | ID=MS.gene90267.t1.exon3;Parent=MS.gene90267.t1 |
| chr4.2 | CDS | 20281173 | 20282300 | 20281173 | ID=cds.MS.gene90267.t1;Parent=MS.gene90267.t1 |
| Gene Sequence |
| Protein sequence |
