AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90268


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90268.t1 MTR_4g092800 93.434 198 4 1 1 198 1 189 7.61e-134 373
MS.gene90268.t1 MTR_2g020930 78.358 134 29 0 65 198 2 135 1.54e-79 233
MS.gene90268.t1 MTR_2g020950 74.627 134 33 1 65 198 2 134 3.98e-72 215
MS.gene90268.t1 MTR_2g020900 59.843 127 50 1 72 198 20 145 4.28e-54 169
MS.gene90268.t1 MTR_8g461030 45.600 125 63 2 74 195 80 202 7.35e-33 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90268.t1 AT4G21860 78.767 146 31 0 52 197 54 199 1.57e-85 251
MS.gene90268.t1 AT4G21860 78.767 146 31 0 52 197 54 199 1.57e-85 251
MS.gene90268.t1 AT4G21860 78.767 146 31 0 52 197 54 199 1.57e-85 251
MS.gene90268.t1 AT4G04800 76.596 141 33 0 58 198 34 174 7.07e-80 236
MS.gene90268.t1 AT4G04830 77.612 134 30 0 65 198 2 135 9.36e-78 229
MS.gene90268.t1 AT4G04810 76.378 127 30 0 71 197 8 134 9.10e-73 216
MS.gene90268.t1 AT4G21850 68.116 138 44 0 61 198 5 142 7.95e-72 214
MS.gene90268.t1 AT4G21840 68.085 141 43 1 60 198 1 141 7.42e-71 212
MS.gene90268.t1 AT4G21830 66.187 139 47 0 60 198 1 139 3.61e-69 207
MS.gene90268.t1 AT4G21830 69.231 130 40 0 69 198 13 142 4.11e-67 202
MS.gene90268.t1 AT4G04840 65.414 133 46 0 64 196 17 149 1.54e-66 201
MS.gene90268.t1 AT4G04830 70.149 134 30 1 65 198 2 125 1.58e-66 200
MS.gene90268.t1 AT4G21860 72.917 96 26 0 52 147 54 149 3.57e-49 158
MS.gene90268.t1 AT4G04810 80.519 77 15 0 71 147 8 84 1.52e-43 141
MS.gene90268.t1 AT4G21850 66.667 87 29 0 61 147 5 91 8.93e-42 137
MS.gene90268.t1 AT1G53670 44.286 140 64 3 66 193 57 194 7.89e-34 119
MS.gene90268.t1 AT1G53670 40.714 140 62 4 66 193 57 187 1.67e-27 103

Find 76 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATTCTTCCTCCGATTTC+TGG 0.041403 4.2:-20287646 None:intergenic
GCCTTCTATGAGGGTGTTCC+TGG 0.207845 4.2:+20290511 MS.gene90268:CDS
GGAGAATATGACAAATTCTT+TGG 0.249999 4.2:+20290406 MS.gene90268:CDS
GGGTGGGGTGAAGGTGAATT+TGG 0.259093 4.2:-20287531 None:intergenic
ATTTCTATCCTCATTCCATC+TGG 0.297903 4.2:-20290671 None:intergenic
CATCTCGGTCATGTATTTAA+AGG 0.300561 4.2:+20290716 MS.gene90268:CDS
TTGTCATATTCTCCTGTTCC+AGG 0.323050 4.2:-20290397 None:intergenic
GAGAATATGACAAATTCTTT+GGG 0.337073 4.2:+20290407 MS.gene90268:CDS
CATTGTAAATAACTAGGAAT+TGG 0.348681 4.2:-20290807 None:intergenic
TCTACAGTTGTGCAGGTTGC+GGG 0.382998 4.2:+20290437 MS.gene90268:CDS
TCAACAACAAAATTCAATTC+CGG 0.394212 4.2:+20290475 MS.gene90268:CDS
GAGAGAGTTGGGTGGGGTGA+AGG 0.399554 4.2:-20287540 None:intergenic
ACAAAATTCAATTCCGGTTG+TGG 0.401214 4.2:+20290481 MS.gene90268:CDS
TCCTGGCTCGGTCCAGAAAT+CGG 0.412246 4.2:+20287634 MS.gene90268:CDS
GTCTACAGTTGTGCAGGTTG+CGG 0.417871 4.2:+20290436 MS.gene90268:CDS
TCCGATTTCTGGACCGAGCC+AGG 0.422097 4.2:-20287635 None:intergenic
GACGCAATGGCGTTCGTTCG+TGG 0.423290 4.2:-20290756 None:intergenic
TCCAGGAACACCCTCATAGA+AGG 0.426613 4.2:-20290512 None:intergenic
CTCAGAATTCGAAACTGCTC+AGG 0.426783 4.2:-20287683 None:intergenic
GAGATGGTAGGGAGAGAGTT+GGG 0.431155 4.2:-20287551 None:intergenic
ATGTCTGCTGCACCTACTCC+TGG 0.438702 4.2:+20287617 MS.gene90268:CDS
TTGGAGTTGAAGAGAAAGGT+AGG 0.444884 4.2:-20287512 None:intergenic
GTTAGAACAAATTGAGGAGA+TGG 0.444988 4.2:-20287489 None:intergenic
ACAAATTGAGGAGATGGGTT+TGG 0.448728 4.2:-20287483 None:intergenic
TGCTGCACCTACTCCTGGCT+CGG 0.454251 4.2:+20287622 MS.gene90268:CDS
ATCCTCATTCCATCTGGGTC+CGG 0.459799 4.2:-20290665 None:intergenic
GAAGGCTGGCCAGCCACAAC+CGG 0.459992 4.2:-20290494 None:intergenic
TTTCTATCCTCATTCCATCT+GGG 0.463849 4.2:-20290670 None:intergenic
AATTCAATTCCGGTTGTGGC+TGG 0.467338 4.2:+20290485 MS.gene90268:CDS
TTATCAAGGTACCCTGGAAC+AGG 0.467778 4.2:+20290385 MS.gene90268:intron
AAATAACATGTGCTGCTTGT+GGG 0.473497 4.2:+20290690 MS.gene90268:CDS
ACGCAATGGCGTTCGTTCGT+GGG 0.474948 4.2:-20290755 None:intergenic
GAGGGAGTCTACAGTTGTGC+AGG 0.478161 4.2:+20290430 MS.gene90268:CDS
TCCAGAAATCGGAGGAAGAA+TGG 0.490874 4.2:+20287645 MS.gene90268:CDS
AGGAGTAGGTGCAGCAGACA+TGG 0.492353 4.2:-20287615 None:intergenic
GGAGATGGTAGGGAGAGAGT+TGG 0.494986 4.2:-20287552 None:intergenic
GAATTTGGAGTTGAAGAGAA+AGG 0.496737 4.2:-20287516 None:intergenic
TTAGAACAAATTGAGGAGAT+GGG 0.498670 4.2:-20287488 None:intergenic
TGGTAGGGAGAGAGTTGGGT+GGG 0.499556 4.2:-20287547 None:intergenic
TGGAGTTGAAGAGAAAGGTA+GGG 0.502554 4.2:-20287511 None:intergenic
ATGGTAGGGAGAGAGTTGGG+TGG 0.512379 4.2:-20287548 None:intergenic
GTAAATAACTAGGAATTGGC+TGG 0.513940 4.2:-20290803 None:intergenic
TTTCGAATTCTGAGGCAGAA+AGG 0.526917 4.2:+20287692 MS.gene90268:CDS
TTTGTTGTTGACTTGTAGAG+TGG 0.535127 4.2:-20290463 None:intergenic
ACCACGCTTCGGCTGACGAA+TGG 0.535443 4.2:-20287573 None:intergenic
TGGCTGGCCAGCCTTCTATG+AGG 0.541767 4.2:+20290501 MS.gene90268:CDS
GGTAGGGTTAGAACAAATTG+AGG 0.542736 4.2:-20287495 None:intergenic
TGGCGTTCGTTCGTGGGTGT+CGG 0.543990 4.2:-20290749 None:intergenic
GGTCATGTATTTAAAGGTGA+AGG 0.544366 4.2:+20290722 MS.gene90268:CDS
GTGACGTTGAGAGAAGAAAG+AGG 0.545278 4.2:-20287461 None:intergenic
TATGACAAATTCTTTGGGGA+GGG 0.549093 4.2:+20290412 MS.gene90268:CDS
GGTAGGGAGAGAGTTGGGTG+GGG 0.550203 4.2:-20287546 None:intergenic
CCACCGCGAAAACCACGCTT+CGG 0.552502 4.2:-20287584 None:intergenic
GGCTGGCCAGCCTTCTATGA+GGG 0.553211 4.2:+20290502 MS.gene90268:CDS
ACGTGGCGGTTTATAGCTCC+AGG 0.554221 4.2:-20290529 None:intergenic
TGTCATATTCTCCTGTTCCA+GGG 0.557941 4.2:-20290396 None:intergenic
AGATGACGGTGAATATACTA+AGG 0.568416 4.2:+20287432 None:intergenic
TCCATTCGTCAGCCGAAGCG+TGG 0.570636 4.2:+20287572 MS.gene90268:CDS
GGCTGACGAATGGAGATGGT+AGG 0.572122 4.2:-20287563 None:intergenic
CTTCGGCTGACGAATGGAGA+TGG 0.572282 4.2:-20287567 None:intergenic
GTATTATTATCAAGGTACCC+TGG 0.575400 4.2:+20290379 MS.gene90268:intron
TCAGAATTCGAAACTGCTCA+GGG 0.577261 4.2:-20287682 None:intergenic
GTGAAATGCTATTGACGCAA+TGG 0.577428 4.2:-20290769 None:intergenic
GGAACACCCTCATAGAAGGC+TGG 0.578117 4.2:-20290508 None:intergenic
GAAATAACATGTGCTGCTTG+TGG 0.579814 4.2:+20290689 MS.gene90268:CDS
AGCCGGACCCAGATGGAATG+AGG 0.581127 4.2:+20290663 MS.gene90268:intron
AATAACATGTGCTGCTTGTG+GGG 0.586603 4.2:+20290691 MS.gene90268:CDS
ATATGACAAATTCTTTGGGG+AGG 0.589338 4.2:+20290411 MS.gene90268:CDS
CACCACCAGCCGGACCCAGA+TGG 0.591335 4.2:+20290656 MS.gene90268:intron
CTGAGCAGTTTCGAATTCTG+AGG 0.595443 4.2:+20287684 MS.gene90268:CDS
GCTGACGAATGGAGATGGTA+GGG 0.596509 4.2:-20287562 None:intergenic
TTCTGGACCGAGCCAGGAGT+AGG 0.614503 4.2:-20287629 None:intergenic
AGAATATGACAAATTCTTTG+GGG 0.674356 4.2:+20290408 MS.gene90268:CDS
TGGCTCGGTCCAGAAATCGG+AGG 0.678535 4.2:+20287637 MS.gene90268:CDS
ATAACATGTGCTGCTTGTGG+GGG 0.687021 4.2:+20290692 MS.gene90268:CDS
CAGAATTCGAAACTGCTCAG+GGG 0.702893 4.2:-20287681 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATTATATATGATAGT+GGG - chr4.2:20290009-20290028 None:intergenic 10.0%
!! TATATAATTATATATGATAG+TGG - chr4.2:20290010-20290029 None:intergenic 10.0%
!!! ACTTAATTGATTTTAAATTT+TGG - chr4.2:20288991-20289010 None:intergenic 10.0%
!!! AGTTTTATTTTTTAAGTAAA+AGG + chr4.2:20288919-20288938 MS.gene90268:intron 10.0%
!!! ATTAGTTTTTTTGAAATAAA+TGG + chr4.2:20289198-20289217 MS.gene90268:intron 10.0%
!!! TTAGTTTTTTTGAAATAAAT+GGG + chr4.2:20289199-20289218 MS.gene90268:intron 10.0%
!! TCTAACATGATAATATTAAT+GGG + chr4.2:20289877-20289896 MS.gene90268:intron 15.0%
!! TTCTAACATGATAATATTAA+TGG + chr4.2:20289876-20289895 MS.gene90268:intron 15.0%
!!! ATGATTTTGTCATATTAAAT+TGG + chr4.2:20290106-20290125 MS.gene90268:intron 15.0%
!!! TAGTTTTTTTGAAATAAATG+GGG + chr4.2:20289200-20289219 MS.gene90268:intron 15.0%
!!! TTTGTTTATAATTTTTTTGG+AGG + chr4.2:20290040-20290059 MS.gene90268:intron 15.0%
!! AAAAATTGTCCCAAAATATA+TGG + chr4.2:20288468-20288487 MS.gene90268:intron 20.0%
!! AAATAATGTGATACAGAAAA+TGG - chr4.2:20289349-20289368 None:intergenic 20.0%
!! AATATATTAGCACAAGAAAT+GGG - chr4.2:20288808-20288827 None:intergenic 20.0%
!! ATTAACATATGGAGATATAA+GGG + chr4.2:20289532-20289551 MS.gene90268:intron 20.0%
!! ATTATTATCCACACAATATA+TGG + chr4.2:20288230-20288249 MS.gene90268:intron 20.0%
!! TAAACATGCAATAAATTTGT+TGG + chr4.2:20289807-20289826 MS.gene90268:intron 20.0%
!! TATTAATTAGAGTGTAGAAT+TGG - chr4.2:20288532-20288551 None:intergenic 20.0%
!! TATTATAACATTTAAGTCTG+TGG + chr4.2:20289264-20289283 MS.gene90268:intron 20.0%
!! TTTATTATGGCTTAATGAAA+TGG + chr4.2:20287969-20287988 MS.gene90268:intron 20.0%
!! TTTCATAGTACTATATTACA+TGG - chr4.2:20287930-20287949 None:intergenic 20.0%
!!! ACTTTAACTTCATTTTCTAA+AGG + chr4.2:20288036-20288055 MS.gene90268:intron 20.0%
!!! ATATTTTGCAAATATACATG+GGG + chr4.2:20288888-20288907 MS.gene90268:intron 20.0%
!!! ATCAAAAAGCTCAATTATTT+TGG + chr4.2:20288718-20288737 MS.gene90268:intron 20.0%
!!! ATGTTTTGGTATTATTATCA+AGG + chr4.2:20290371-20290390 MS.gene90268:intron 20.0%
!!! CATATTAAATTGGTAATCTT+AGG + chr4.2:20290116-20290135 MS.gene90268:intron 20.0%
!!! CATATTTTGCAAATATACAT+GGG + chr4.2:20288887-20288906 MS.gene90268:intron 20.0%
!!! TATATCCTTTTCCATTTAAA+GGG - chr4.2:20289508-20289527 None:intergenic 20.0%
!!! TCAAAAAGCTCAATTATTTT+GGG + chr4.2:20288719-20288738 MS.gene90268:intron 20.0%
!!! TGAAACACATAAATTTTATC+AGG - chr4.2:20290638-20290657 None:intergenic 20.0%
!!! TTTCACATGTTATATCTTTT+TGG + chr4.2:20290168-20290187 MS.gene90268:intron 20.0%
! AAAGGTGATTAATATTGCAT+TGG - chr4.2:20288507-20288526 None:intergenic 25.0%
! AGAATATGACAAATTCTTTG+GGG + chr4.2:20290408-20290427 MS.gene90268:CDS 25.0%
! ATATAGTACTATGAAAACCA+TGG + chr4.2:20287934-20287953 MS.gene90268:intron 25.0%
! ATATTAAACTCAAACAGTTC+AGG - chr4.2:20290229-20290248 None:intergenic 25.0%
! ATCATACTTGAAATGTAACT+AGG + chr4.2:20289085-20289104 MS.gene90268:intron 25.0%
! ATTACATATGCTCAATTATG+CGG - chr4.2:20289378-20289397 None:intergenic 25.0%
! CAATATATTAGCACAAGAAA+TGG - chr4.2:20288809-20288828 None:intergenic 25.0%
! GAGAATATGACAAATTCTTT+GGG + chr4.2:20290407-20290426 MS.gene90268:CDS 25.0%
! GATTAACATATGGAGATATA+AGG + chr4.2:20289531-20289550 MS.gene90268:intron 25.0%
! GGTAAGAAAAAAATTCTGAA+TGG - chr4.2:20288787-20288806 None:intergenic 25.0%
! TAGAGTTACAAAAAAAGTAG+AGG - chr4.2:20289127-20289146 None:intergenic 25.0%
! TATCATGTTAGAAGATTTAG+TGG - chr4.2:20289869-20289888 None:intergenic 25.0%
! TCAAAAACTTATAACACGAA+TGG + chr4.2:20288317-20288336 MS.gene90268:intron 25.0%
! TCAACAACAAAATTCAATTC+CGG + chr4.2:20290475-20290494 MS.gene90268:CDS 25.0%
! TCAATTAAGTACAAACACTA+TGG + chr4.2:20289001-20289020 MS.gene90268:intron 25.0%
! TCATACTTGAAATGTAACTA+GGG + chr4.2:20289086-20289105 MS.gene90268:intron 25.0%
! TGTAACTCTATGTTGAATTA+AGG + chr4.2:20289137-20289156 MS.gene90268:intron 25.0%
! TGTTTGTGTGATATTATCAT+AGG + chr4.2:20289579-20289598 MS.gene90268:intron 25.0%
! TTAAATGGAAAAGGATATAG+AGG + chr4.2:20289509-20289528 MS.gene90268:intron 25.0%
! TTAGAAGTAATTTCAGAGAT+GGG - chr4.2:20288357-20288376 None:intergenic 25.0%
! TTGAGCTATTTATCCAAATA+GGG + chr4.2:20287872-20287891 MS.gene90268:intron 25.0%
!! AACAAAAGGCTCAATTATTT+TGG - chr4.2:20288446-20288465 None:intergenic 25.0%
!! ACAAAAGGCTCAATTATTTT+GGG - chr4.2:20288445-20288464 None:intergenic 25.0%
!! ATAGCATTTTATCTTACTTG+AGG + chr4.2:20289905-20289924 MS.gene90268:intron 25.0%
!! ATTAGAAGTTTTGCAGTAAA+TGG + chr4.2:20289693-20289712 MS.gene90268:intron 25.0%
!! ATTCGTGTTATAAGTTTTTG+AGG - chr4.2:20288318-20288337 None:intergenic 25.0%
!! CATTTTCTTGTTAACAGAAA+AGG - chr4.2:20290354-20290373 None:intergenic 25.0%
!! CTATATCCTTTTCCATTTAA+AGG - chr4.2:20289509-20289528 None:intergenic 25.0%
!! CTGTTAACAAGAAAATGTTT+TGG + chr4.2:20290357-20290376 MS.gene90268:intron 25.0%
!! GATGTGACAATTATAGTTTT+GGG + chr4.2:20289056-20289075 MS.gene90268:intron 25.0%
!! GCATATTTTGCAAATATACA+TGG + chr4.2:20288886-20288905 MS.gene90268:intron 25.0%
!! TGATGTGACAATTATAGTTT+TGG + chr4.2:20289055-20289074 MS.gene90268:intron 25.0%
!!! GGGACAATTTTTTTAACAAA+AGG - chr4.2:20288460-20288479 None:intergenic 25.0%
!!! GTAAGTGGTAAGTTTTATTA+TGG + chr4.2:20287956-20287975 MS.gene90268:intron 25.0%
!!! TTTTTTGAAATAAATGGGGT+CGG + chr4.2:20289204-20289223 MS.gene90268:intron 25.0%
AATGCATCAATACTTAGACA+AGG + chr4.2:20288607-20288626 MS.gene90268:intron 30.0%
ATAAAACTTACCACTTACCA+TGG - chr4.2:20287954-20287973 None:intergenic 30.0%
ATTGCATTGGAAAGTGAAAT+GGG - chr4.2:20288494-20288513 None:intergenic 30.0%
ATTTATCCAAATAGGGAACA+GGG + chr4.2:20287879-20287898 MS.gene90268:intron 30.0%
CAATTGTTAAATGTGTAGTC+TGG + chr4.2:20290080-20290099 MS.gene90268:intron 30.0%
CCACTTTGCATTTATGATAA+TGG + chr4.2:20288582-20288601 MS.gene90268:intron 30.0%
CCATTATCATAAATGCAAAG+TGG - chr4.2:20288585-20288604 None:intergenic 30.0%
GAAGTTAGACTAGAAAAGTA+AGG + chr4.2:20287901-20287920 MS.gene90268:intron 30.0%
GGAGAATATGACAAATTCTT+TGG + chr4.2:20290406-20290425 MS.gene90268:CDS 30.0%
GGATATAGAGGATTAACATA+TGG + chr4.2:20289521-20289540 MS.gene90268:intron 30.0%
GTTAGAAGTAATTTCAGAGA+TGG - chr4.2:20288358-20288377 None:intergenic 30.0%
GTTGAGCTATTTATCCAAAT+AGG + chr4.2:20287871-20287890 MS.gene90268:intron 30.0%
TAAGAACAAATAAACTCACG+TGG - chr4.2:20290549-20290568 None:intergenic 30.0%
TAGAGTGTAGAATTGGAAAA+AGG - chr4.2:20288525-20288544 None:intergenic 30.0%
TATTGCATTGGAAAGTGAAA+TGG - chr4.2:20288495-20288514 None:intergenic 30.0%
TATTTATCCAAATAGGGAAC+AGG + chr4.2:20287878-20287897 MS.gene90268:intron 30.0%
TTAGAACAAATTGAGGAGAT+GGG - chr4.2:20287491-20287510 None:intergenic 30.0%
! ATAAGGGCTTCATATGATTT+TGG + chr4.2:20289548-20289567 MS.gene90268:intron 30.0%
! ATCCACACAATATATGGTTT+TGG + chr4.2:20288236-20288255 MS.gene90268:intron 30.0%
! TAACGACTTTTCAACTGATT+TGG + chr4.2:20288945-20288964 MS.gene90268:intron 30.0%
! TGAAATGGGCCATATATTTT+GGG - chr4.2:20288480-20288499 None:intergenic 30.0%
! TTTGTTGGAGTATGGTTTTT+GGG + chr4.2:20289822-20289841 MS.gene90268:intron 30.0%
! TTTTAGGCTTTTTGTGGTTA+AGG + chr4.2:20289657-20289676 MS.gene90268:intron 30.0%
!! ACTTCATTTTCTAAAGGAGA+AGG + chr4.2:20288042-20288061 MS.gene90268:intron 30.0%
!! ATTTGTTGGAGTATGGTTTT+TGG + chr4.2:20289821-20289840 MS.gene90268:intron 30.0%
!! CTCTGAAATTACTTCTAACA+TGG + chr4.2:20288359-20288378 MS.gene90268:intron 30.0%
!! CTTCATTTTCTAAAGGAGAA+GGG + chr4.2:20288043-20288062 MS.gene90268:intron 30.0%
!! GCAATAAATTTGTTGGAGTA+TGG + chr4.2:20289814-20289833 MS.gene90268:intron 30.0%
!! TCAAGTTGACAGAAAAGTAT+CGG - chr4.2:20290289-20290308 None:intergenic 30.0%
!!! AAAGCTCAATTATTTTGGGA+CGG + chr4.2:20288723-20288742 MS.gene90268:intron 30.0%
AAGATTTCCTACATAGAAGC+TGG - chr4.2:20288001-20288020 None:intergenic 35.0%
ACAAAATTCAATTCCGGTTG+TGG + chr4.2:20290481-20290500 MS.gene90268:CDS 35.0%
ACTATGAAAACCATGGTAAG+TGG + chr4.2:20287941-20287960 MS.gene90268:intron 35.0%
AGAAGCAGAGGAGATTAAAT+TGG + chr4.2:20289617-20289636 MS.gene90268:intron 35.0%
AGCCAAAACCATATATTGTG+TGG - chr4.2:20288241-20288260 None:intergenic 35.0%
ATAGCTCAACTAAGAGCTTA+TGG - chr4.2:20287861-20287880 None:intergenic 35.0%
ATCCAAAGATAGTGAAGAGA+AGG - chr4.2:20290577-20290596 None:intergenic 35.0%
ATTTCTATCCTCATTCCATC+TGG - chr4.2:20290674-20290693 None:intergenic 35.0%
CATCTCGGTCATGTATTTAA+AGG + chr4.2:20290716-20290735 MS.gene90268:CDS 35.0%
CTTATCAGAGATGCGAATTA+AGG + chr4.2:20289310-20289329 MS.gene90268:intron 35.0%
GAAGCAGAGGAGATTAAATT+GGG + chr4.2:20289618-20289637 MS.gene90268:intron 35.0%
GAGAGATGAAATAACGTACT+CGG - chr4.2:20287720-20287739 None:intergenic 35.0%
GATGATCTGGTTAAGTTAAG+TGG + chr4.2:20288072-20288091 MS.gene90268:intron 35.0%
GGTCATGTATTTAAAGGTGA+AGG + chr4.2:20290722-20290741 MS.gene90268:CDS 35.0%
GTGATATTATCATAGGCATG+TGG + chr4.2:20289586-20289605 MS.gene90268:intron 35.0%
GTTAGAACAAATTGAGGAGA+TGG - chr4.2:20287492-20287511 None:intergenic 35.0%
TAACATGTGAAACATACTGC+AGG - chr4.2:20290160-20290179 None:intergenic 35.0%
TCATGCCCTTTAAATGGAAA+AGG + chr4.2:20289500-20289519 MS.gene90268:intron 35.0%
TGCAGTAAATGGTTAGAGAA+GGG + chr4.2:20289704-20289723 MS.gene90268:intron 35.0%
TTGCAGTAAATGGTTAGAGA+AGG + chr4.2:20289703-20289722 MS.gene90268:intron 35.0%
TTTCTATCCTCATTCCATCT+GGG - chr4.2:20290673-20290692 None:intergenic 35.0%
! AGAGATGGGTTCAAAAATGT+TGG - chr4.2:20288343-20288362 None:intergenic 35.0%
! ATATGACAAATTCTTTGGGG+AGG + chr4.2:20290411-20290430 MS.gene90268:CDS 35.0%
! GAATTTGGAGTTGAAGAGAA+AGG - chr4.2:20287519-20287538 None:intergenic 35.0%
! GCATTTTATCTTACTTGAGG+TGG + chr4.2:20289908-20289927 MS.gene90268:intron 35.0%
! GTATTATTATCAAGGTACCC+TGG + chr4.2:20290379-20290398 MS.gene90268:intron 35.0%
! GTGAAATGGGCCATATATTT+TGG - chr4.2:20288481-20288500 None:intergenic 35.0%
! TATGACAAATTCTTTGGGGA+GGG + chr4.2:20290412-20290431 MS.gene90268:CDS 35.0%
! TGAGGTTAGAAGAGTTTTTG+AGG - chr4.2:20288300-20288319 None:intergenic 35.0%
! TTGTGGTTAAGGAGATGTTT+TGG + chr4.2:20289668-20289687 MS.gene90268:intron 35.0%
! TTGTTGGAGTATGGTTTTTG+GGG + chr4.2:20289823-20289842 MS.gene90268:intron 35.0%
! TTTTACTCACGCTCTTTGAA+AGG + chr4.2:20289453-20289472 MS.gene90268:intron 35.0%
!! AAATAACATGTGCTGCTTGT+GGG + chr4.2:20290690-20290709 MS.gene90268:CDS 35.0%
!! ATATGATAGTGGGTGATAGT+GGG - chr4.2:20289999-20290018 None:intergenic 35.0%
!! GCAATGTTTTAGGCTTTTTG+TGG + chr4.2:20289651-20289670 MS.gene90268:intron 35.0%
!! TATATGATAGTGGGTGATAG+TGG - chr4.2:20290000-20290019 None:intergenic 35.0%
!! TTTGTTGTTGACTTGTAGAG+TGG - chr4.2:20290466-20290485 None:intergenic 35.0%
!!! AAGGCTCAATTATTTTGGGA+CGG - chr4.2:20288441-20288460 None:intergenic 35.0%
ACAAACACTATGGCTGACAT+CGG + chr4.2:20289011-20289030 MS.gene90268:intron 40.0%
AGAAGTTTAGCAGGTGTCAA+GGG + chr4.2:20289741-20289760 MS.gene90268:intron 40.0%
AGTAAATGGTTAGAGAAGGG+AGG + chr4.2:20289707-20289726 MS.gene90268:intron 40.0%
ATTATCATAGGCATGTGGCA+GGG + chr4.2:20289591-20289610 MS.gene90268:intron 40.0%
CTGTACTCATGCCCTTTAAA+TGG + chr4.2:20289494-20289513 MS.gene90268:intron 40.0%
GAACAAATAAACTCACGTGG+CGG - chr4.2:20290546-20290565 None:intergenic 40.0%
GGTAGGGTTAGAACAAATTG+AGG - chr4.2:20287498-20287517 None:intergenic 40.0%
GTGAAATGCTATTGACGCAA+TGG - chr4.2:20290772-20290791 None:intergenic 40.0%
TAACTTCCCTGTTCCCTATT+TGG - chr4.2:20287888-20287907 None:intergenic 40.0%
TAGAAGTTTAGCAGGTGTCA+AGG + chr4.2:20289740-20289759 MS.gene90268:intron 40.0%
TATTATCATAGGCATGTGGC+AGG + chr4.2:20289590-20289609 MS.gene90268:intron 40.0%
TCAGAATTCGAAACTGCTCA+GGG - chr4.2:20287685-20287704 None:intergenic 40.0%
TGATGCAGTAGAAGTTTAGC+AGG + chr4.2:20289732-20289751 MS.gene90268:intron 40.0%
TGCCTTCTCTTCACTATCTT+TGG + chr4.2:20290572-20290591 MS.gene90268:intron 40.0%
TGCTCAGTGTCATGTAAGTT+AGG + chr4.2:20288159-20288178 MS.gene90268:intron 40.0%
TGGAGTTGAAGAGAAAGGTA+GGG - chr4.2:20287514-20287533 None:intergenic 40.0%
TGGATAGAACATGCTGAAAG+AGG + chr4.2:20288965-20288984 MS.gene90268:intron 40.0%
TGTCATATTCTCCTGTTCCA+GGG - chr4.2:20290399-20290418 None:intergenic 40.0%
TTGGAGTTGAAGAGAAAGGT+AGG - chr4.2:20287515-20287534 None:intergenic 40.0%
TTGTCATATTCTCCTGTTCC+AGG - chr4.2:20290400-20290419 None:intergenic 40.0%
! ACAAATTGAGGAGATGGGTT+TGG - chr4.2:20287486-20287505 None:intergenic 40.0%
!! AATAACATGTGCTGCTTGTG+GGG + chr4.2:20290691-20290710 MS.gene90268:CDS 40.0%
!! GAAATAACATGTGCTGCTTG+TGG + chr4.2:20290689-20290708 MS.gene90268:CDS 40.0%
!! TTTCGAATTCTGAGGCAGAA+AGG + chr4.2:20287692-20287711 MS.gene90268:CDS 40.0%
!!! CTCAATTATTTTGGGACGGA+GGG + chr4.2:20288727-20288746 MS.gene90268:intron 40.0%
!!! CTCAATTATTTTGGGACGGA+GGG - chr4.2:20288746-20288727 None:intergenic 40.0%
!!! TTTTGGGGCAGTGATGTTAT+TGG + chr4.2:20289838-20289857 MS.gene90268:intron 40.0%
AATTCAATTCCGGTTGTGGC+TGG + chr4.2:20290485-20290504 MS.gene90268:CDS 45.0%
AGAGAGAGAGAGAGAGAGAA+TGG - chr4.2:20288643-20288662 None:intergenic 45.0%
ATTGTACGCACTTGACGAGA+AGG + chr4.2:20288825-20288844 MS.gene90268:intron 45.0%
CAAACACTATGGCTGACATC+GGG + chr4.2:20289012-20289031 MS.gene90268:intron 45.0%
CAGAATTCGAAACTGCTCAG+GGG - chr4.2:20287684-20287703 None:intergenic 45.0%
CTCAGAATTCGAAACTGCTC+AGG - chr4.2:20287686-20287705 None:intergenic 45.0%
CTGAGCAGTTTCGAATTCTG+AGG + chr4.2:20287684-20287703 MS.gene90268:CDS 45.0%
GAGGAGATTAAATTGGGCAG+AGG + chr4.2:20289624-20289643 MS.gene90268:intron 45.0%
GTGACGTTGAGAGAAGAAAG+AGG - chr4.2:20287464-20287483 None:intergenic 45.0%
TCCAGAAATCGGAGGAAGAA+TGG + chr4.2:20287645-20287664 MS.gene90268:CDS 45.0%
TTATGTGTTTCACCACCAGC+CGG + chr4.2:20290646-20290665 MS.gene90268:intron 45.0%
TTGTACGCACTTGACGAGAA+GGG + chr4.2:20288826-20288845 MS.gene90268:intron 45.0%
TTTCCTACATAGAAGCTGGC+TGG - chr4.2:20287997-20288016 None:intergenic 45.0%
! AGAAGGGCATGAAGATGATC+TGG + chr4.2:20288059-20288078 MS.gene90268:intron 45.0%
! CAGAGGAGCAGCAATGTTTT+AGG + chr4.2:20289641-20289660 MS.gene90268:intron 45.0%
! TCACGCTCTTTGAAAGGTCA+CGG + chr4.2:20289459-20289478 MS.gene90268:intron 45.0%
! TTATCAAGGTACCCTGGAAC+AGG + chr4.2:20290385-20290404 MS.gene90268:intron 45.0%
!! ATAACATGTGCTGCTTGTGG+GGG + chr4.2:20290692-20290711 MS.gene90268:CDS 45.0%
!!! GCTCAATTATTTTGGGACGG+AGG + chr4.2:20288726-20288745 MS.gene90268:intron 45.0%
!!! GCTCAATTATTTTGGGACGG+AGG - chr4.2:20288745-20288726 None:intergenic 45.0%
!!! ATATTTGTTTATAATTTTTT+TGG + chr4.2:20290037-20290056 MS.gene90268:intron 5.0%
ATCCTCATTCCATCTGGGTC+CGG - chr4.2:20290668-20290687 None:intergenic 50.0%
GAGATGGTAGGGAGAGAGTT+GGG - chr4.2:20287554-20287573 None:intergenic 50.0%
GCCATTCTTCCTCCGATTTC+TGG - chr4.2:20287649-20287668 None:intergenic 50.0%
GCTGACGAATGGAGATGGTA+GGG - chr4.2:20287565-20287584 None:intergenic 50.0%
GTCTACAGTTGTGCAGGTTG+CGG + chr4.2:20290436-20290455 MS.gene90268:CDS 50.0%
TCCAGGAACACCCTCATAGA+AGG - chr4.2:20290515-20290534 None:intergenic 50.0%
TCTACAGTTGTGCAGGTTGC+GGG + chr4.2:20290437-20290456 MS.gene90268:CDS 50.0%
ACGCAATGGCGTTCGTTCGT+GGG - chr4.2:20290758-20290777 None:intergenic 55.0%
ACGTGGCGGTTTATAGCTCC+AGG - chr4.2:20290532-20290551 None:intergenic 55.0%
AGGAGTAGGTGCAGCAGACA+TGG - chr4.2:20287618-20287637 None:intergenic 55.0%
ATCATAGGCATGTGGCAGGG+AGG + chr4.2:20289594-20289613 MS.gene90268:intron 55.0%
ATGGTAGGGAGAGAGTTGGG+TGG - chr4.2:20287551-20287570 None:intergenic 55.0%
ATGTCTGCTGCACCTACTCC+TGG + chr4.2:20287617-20287636 MS.gene90268:CDS 55.0%
CTTCGGCTGACGAATGGAGA+TGG - chr4.2:20287570-20287589 None:intergenic 55.0%
GAGCCAGCCAGCTTCTATGT+AGG + chr4.2:20287991-20288010 MS.gene90268:intron 55.0%
GAGGGAGTCTACAGTTGTGC+AGG + chr4.2:20290430-20290449 MS.gene90268:CDS 55.0%
GGAACACCCTCATAGAAGGC+TGG - chr4.2:20290511-20290530 None:intergenic 55.0%
GGAGATGGTAGGGAGAGAGT+TGG - chr4.2:20287555-20287574 None:intergenic 55.0%
GGCTGACGAATGGAGATGGT+AGG - chr4.2:20287566-20287585 None:intergenic 55.0%
GGGTGGGGTGAAGGTGAATT+TGG - chr4.2:20287534-20287553 None:intergenic 55.0%
TGGTAGGGAGAGAGTTGGGT+GGG - chr4.2:20287550-20287569 None:intergenic 55.0%
!! GCCTTCTATGAGGGTGTTCC+TGG + chr4.2:20290511-20290530 MS.gene90268:CDS 55.0%
!! TCCTGGCTCGGTCCAGAAAT+CGG + chr4.2:20287634-20287653 MS.gene90268:CDS 55.0%
ACCACGCTTCGGCTGACGAA+TGG - chr4.2:20287576-20287595 None:intergenic 60.0%
AGCCGGACCCAGATGGAATG+AGG + chr4.2:20290663-20290682 MS.gene90268:intron 60.0%
CACTATGGCTGACATCGGGC+TGG + chr4.2:20289016-20289035 MS.gene90268:intron 60.0%
CCACCGCGAAAACCACGCTT+CGG - chr4.2:20287587-20287606 None:intergenic 60.0%
GACGCAATGGCGTTCGTTCG+TGG - chr4.2:20290759-20290778 None:intergenic 60.0%
GAGAGAGTTGGGTGGGGTGA+AGG - chr4.2:20287543-20287562 None:intergenic 60.0%
GCTGCTTGTGGGGGACATCT+CGG + chr4.2:20290701-20290720 MS.gene90268:CDS 60.0%
GGTAGGGAGAGAGTTGGGTG+GGG - chr4.2:20287549-20287568 None:intergenic 60.0%
TCATTCCATCTGGGTCCGGC+TGG - chr4.2:20290664-20290683 None:intergenic 60.0%
TCCATTCGTCAGCCGAAGCG+TGG + chr4.2:20287572-20287591 MS.gene90268:CDS 60.0%
TGCTGCACCTACTCCTGGCT+CGG + chr4.2:20287622-20287641 MS.gene90268:CDS 60.0%
TGGCGTTCGTTCGTGGGTGT+CGG - chr4.2:20290752-20290771 None:intergenic 60.0%
TTCTGGACCGAGCCAGGAGT+AGG - chr4.2:20287632-20287651 None:intergenic 60.0%
! CAGCCGAAGCGTGGTTTTCG+CGG + chr4.2:20287581-20287600 MS.gene90268:CDS 60.0%
! GGCTGGCCAGCCTTCTATGA+GGG + chr4.2:20290502-20290521 MS.gene90268:CDS 60.0%
! TCCGATTTCTGGACCGAGCC+AGG - chr4.2:20287638-20287657 None:intergenic 60.0%
! TGGCTGGCCAGCCTTCTATG+AGG + chr4.2:20290501-20290520 MS.gene90268:CDS 60.0%
!! ATGGCTGACATCGGGCTGGT+TGG + chr4.2:20289020-20289039 MS.gene90268:intron 60.0%
!! TGGCTCGGTCCAGAAATCGG+AGG + chr4.2:20287637-20287656 MS.gene90268:CDS 60.0%
!! TGGCTGACATCGGGCTGGTT+GGG + chr4.2:20289021-20289040 MS.gene90268:intron 60.0%
GTGGCAGGGAGGAGAAGCAG+AGG + chr4.2:20289605-20289624 MS.gene90268:intron 65.0%
TTCCATCTGGGTCCGGCTGG+TGG - chr4.2:20290661-20290680 None:intergenic 65.0%
! CCGAAGCGTGGTTTTCGCGG+TGG + chr4.2:20287584-20287603 MS.gene90268:CDS 65.0%
! GAAGGCTGGCCAGCCACAAC+CGG - chr4.2:20290497-20290516 None:intergenic 65.0%
CACCACCAGCCGGACCCAGA+TGG + chr4.2:20290656-20290675 MS.gene90268:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 20287434 20290817 20287434 ID=MS.gene90268
chr4.2 mRNA 20287434 20290817 20287434 ID=MS.gene90268.t1;Parent=MS.gene90268
chr4.2 exon 20287434 20287720 20287434 ID=MS.gene90268.t1.exon1;Parent=MS.gene90268.t1
chr4.2 CDS 20287434 20287720 20287434 ID=cds.MS.gene90268.t1;Parent=MS.gene90268.t1
chr4.2 exon 20290393 20290549 20290393 ID=MS.gene90268.t1.exon2;Parent=MS.gene90268.t1
chr4.2 CDS 20290393 20290549 20290393 ID=cds.MS.gene90268.t1;Parent=MS.gene90268.t1
chr4.2 exon 20290665 20290817 20290665 ID=MS.gene90268.t1.exon3;Parent=MS.gene90268.t1
chr4.2 CDS 20290665 20290817 20290665 ID=cds.MS.gene90268.t1;Parent=MS.gene90268.t1
Gene Sequence

>MS.gene90268

ATGACGGTGAATATACTAAGGATAACACCTCTTTCTTCTCTCAACGTCACCAAACCCATCTCCTCAATTTGTTCTAACCCTACCTTTCTCTTCAACTCCAAATTCACCTTCACCCCACCCAACTCTCTCCCTACCATCTCCATTCGTCAGCCGAAGCGTGGTTTTCGCGGTGGAATTGTCGCCATGTCTGCTGCACCTACTCCTGGCTCGGTCCAGAAATCGGAGGAAGAATGGCAAGCTATTCTCTCCCCTGAGCAGTTTCGAATTCTGAGGCAGAAAGGCACCGAGTACGTTATTTCATCTCTCAAACTCTCAATCAATCAAGCTTTCTTATTTTATAGCTTATGAAATCAACTTATGCTTATATGAAAACAATTTGATTTTATTTATATTATAGAAATAGCTTATACATAAGCACTTTATGCCATAAGCTCTTAGTTGAGCTATTTATCCAAATAGGGAACAGGGAAGTTAGACTAGAAAAGTAAGGTAACCATGTAATATAGTACTATGAAAACCATGGTAAGTGGTAAGTTTTATTATGGCTTAATGAAATGGAGCCAGCCAGCTTCTATGTAGGAAATCTTTGAATTTATTTATAAACTTTAACTTCATTTTCTAAAGGAGAAGGGCATGAAGATGATCTGGTTAAGTTAAGTGGAGTATCGCAGCAAGAAAGACTACAAAATAATATAATGTAAACATTAAACAACTACTCATAAATGTGCTCAGTGTCATGTAAGTTAGGTGATCACACTAGAGATAAGAGAAGTTTCTTACATTCTATGTGTTTCACATTATTATCCACACAATATATGGTTTTGGCTGAAATTTCTGCATATCAAGTTATCAAACTCTTCTAACCTCAAAAACTCTTCTAACCTCAAAAACTTATAACACGAATGGCCAACATTTTTGAACCCATCTCTGAAATTACTTCTAACATGGTTTTTAATTCAATTCTTTTTATAGTTCTATGCTTAACTTTATGACTATTACTCCCTCCGTCCCAAAATAATTGAGCCTTTTGTTAAAAAAATTGTCCCAAAATATATGGCCCATTTCACTTTCCAATGCAATATTAATCACCTTTTTCCAATTCTACACTCTAATTAATACTAATTTCATCACTTTCAGTTCAATATCTTCCACTTTGCATTTATGATAATGGTGAATGCATCAATACTTAGACAAGGACACTTAAAACCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTTATACACTTTTTTTAATACGTGTGAAATGATCAAAAAGCTCAATTATTTTGGGACGGAGGGAGTATAACATTGTTCAAGAGCGAGTAAGTTGTGTCCATTCAGAATTTTTTTCTTACCCATTTCTTGTGCTAATATATTGTACGCACTTGACGAGAAGGGCTCAAACTTGTTGAACACGTGAGCGCTTAGTTTATCTGCATATTTTGCAAATATACATGGGGAGTATTACAGTTTTATTTTTTAAGTAAAAGGAAGTAACGACTTTTCAACTGATTTGGATAGAACATGCTGAAAGAGGCCAAAATTTAAAATCAATTAAGTACAAACACTATGGCTGACATCGGGCTGGTTGGGTGATGCAGATTTGATGTGACAATTATAGTTTTGGGATCTGTATCATACTTGAAATGTAACTAGGGTGTATTGTCTTTCATCCTCTACTTTTTTTGTAACTCTATGTTGAATTAAGGCACAACTTTTACTGATTTGCAACTATAAGAATTAATCAATTAGTTTTTTTGAAATAAATGGGGTCGGTGCATGTCTTTGATGAATCAATATAACTTTAACATCATATTATAACATTTAAGTCTGTGGTGTTCATCATTAGTTATTAAAAACTTATCAGAGATGCGAATTAAGGAATAAGAACTTCACCATTTTCTGTATCACATTATTTAGAGCACCGCATAATTGAGCATATGTAATTTTCATACAATACTACAACTAACACATTTATGCAACATTTTGAAACATGATATCATTTTACTCACGCTCTTTGAAAGGTCACGGTTTCAGCATTTGCTGTACTCATGCCCTTTAAATGGAAAAGGATATAGAGGATTAACATATGGAGATATAAGGGCTTCATATGATTTTGGTTCTTTGTTGTTTGTGTGATATTATCATAGGCATGTGGCAGGGAGGAGAAGCAGAGGAGATTAAATTGGGCAGAGGAGCAGCAATGTTTTAGGCTTTTTGTGGTTAAGGAGATGTTTTGGAAATTAGAAGTTTTGCAGTAAATGGTTAGAGAAGGGAGGAGTGATGCAGTAGAAGTTTAGCAGGTGTCAAGGGAAGATGCTGTCAAAAGAACACAAAGATCTCTTGCAAAGTTTTGTAAACATGCAATAAATTTGTTGGAGTATGGTTTTTGGGGCAGTGATGTTATTGGAGTAACCACTAAATCTTCTAACATGATAATATTAATGGGAGAAGATAGCATTTTATCTTACTTGAGGTGGTCTTGCAATGAAATTTTAATATCTTTTAAAGATTTTTTAACTTTGATATTTTATAAAAAAAAATACCCACTATCACCCACTATCATATATAATTATATATAAATGTATATTTGTTTATAATTTTTTTGGAGGAAATATTGAGAGAAAGTCAATTGTTAAATGTGTAGTCTGGATGATGATTTTGTCATATTAAATTGGTAATCTTAGGCAATTGATTAGACAAAAACCTGCAGTATGTTTCACATGTTATATCTTTTTGGATTTTGTAATATCTATTATGTTGATGAAAATTTTACCTGAACTGTTTGAGTTTAATATATTTCACTCTCTTTCACACTAAATATAGTTGTTTGTACCGATACTTTTCTGTCAACTTGAACGAATAACAGCTGATGATATATAGACTCAAAATTGAGATTTCCTTTTCTGTTAACAAGAAAATGTTTTGGTATTATTATCAAGGTACCCTGGAACAGGAGAATATGACAAATTCTTTGGGGAGGGAGTCTACAGTTGTGCAGGTTGCGGGACTCCACTCTACAAGTCAACAACAAAATTCAATTCCGGTTGTGGCTGGCCAGCCTTCTATGAGGGTGTTCCTGGAGCTATAAACCGCCACGTGAGTTTATTTGTTCTTATGCTGCCTTCTCTTCACTATCTTTGGATATTACTATTACTGCATCAGCAATTTAAGTCTTTATAAACCTGATAAAATTTATGTGTTTCACCACCAGCCGGACCCAGATGGAATGAGGATAGAAATAACATGTGCTGCTTGTGGGGGACATCTCGGTCATGTATTTAAAGGTGAAGGATTTCCGACACCCACGAACGAACGCCATTGCGTCAATAGCATTTCACTAAAATTTGCGCCAGCCAATTCCTAG

Protein sequence

>MS.gene90268.t1

MTVNILRITPLSSLNVTKPISSICSNPTFLFNSKFTFTPPNSLPTISIRQPKRGFRGGIVAMSAAPTPGSVQKSEEEWQAILSPEQFRILRQKGTEYPGTGEYDKFFGEGVYSCAGCGTPLYKSTTKFNSGCGWPAFYEGVPGAINRHPDPDGMRIEITCAACGGHLGHVFKGEGFPTPTNERHCVNSISLKFAPANS