Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90268.t1 | XP_003608339.1 | 93.4 | 198 | 4 | 1 | 1 | 198 | 1 | 189 | 3.50E-102 | 380.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90268.t1 | Q9C5C8 | 63.5 | 200 | 69 | 2 | 1 | 197 | 1 | 199 | 4.4e-69 | 262.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90268.t1 | G7JU02 | 93.4 | 198 | 4 | 1 | 1 | 198 | 1 | 189 | 2.5e-102 | 380.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056405 | MS.gene90268 | 0.817472 | 3.24E-52 | -1.69E-46 |
MS.gene056607 | MS.gene90268 | 0.822331 | 2.51E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90268.t1 | MTR_4g092800 | 93.434 | 198 | 4 | 1 | 1 | 198 | 1 | 189 | 7.61e-134 | 373 |
MS.gene90268.t1 | MTR_2g020930 | 78.358 | 134 | 29 | 0 | 65 | 198 | 2 | 135 | 1.54e-79 | 233 |
MS.gene90268.t1 | MTR_2g020950 | 74.627 | 134 | 33 | 1 | 65 | 198 | 2 | 134 | 3.98e-72 | 215 |
MS.gene90268.t1 | MTR_2g020900 | 59.843 | 127 | 50 | 1 | 72 | 198 | 20 | 145 | 4.28e-54 | 169 |
MS.gene90268.t1 | MTR_8g461030 | 45.600 | 125 | 63 | 2 | 74 | 195 | 80 | 202 | 7.35e-33 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90268.t1 | AT4G21860 | 78.767 | 146 | 31 | 0 | 52 | 197 | 54 | 199 | 1.57e-85 | 251 |
MS.gene90268.t1 | AT4G21860 | 78.767 | 146 | 31 | 0 | 52 | 197 | 54 | 199 | 1.57e-85 | 251 |
MS.gene90268.t1 | AT4G21860 | 78.767 | 146 | 31 | 0 | 52 | 197 | 54 | 199 | 1.57e-85 | 251 |
MS.gene90268.t1 | AT4G04800 | 76.596 | 141 | 33 | 0 | 58 | 198 | 34 | 174 | 7.07e-80 | 236 |
MS.gene90268.t1 | AT4G04830 | 77.612 | 134 | 30 | 0 | 65 | 198 | 2 | 135 | 9.36e-78 | 229 |
MS.gene90268.t1 | AT4G04810 | 76.378 | 127 | 30 | 0 | 71 | 197 | 8 | 134 | 9.10e-73 | 216 |
MS.gene90268.t1 | AT4G21850 | 68.116 | 138 | 44 | 0 | 61 | 198 | 5 | 142 | 7.95e-72 | 214 |
MS.gene90268.t1 | AT4G21840 | 68.085 | 141 | 43 | 1 | 60 | 198 | 1 | 141 | 7.42e-71 | 212 |
MS.gene90268.t1 | AT4G21830 | 66.187 | 139 | 47 | 0 | 60 | 198 | 1 | 139 | 3.61e-69 | 207 |
MS.gene90268.t1 | AT4G21830 | 69.231 | 130 | 40 | 0 | 69 | 198 | 13 | 142 | 4.11e-67 | 202 |
MS.gene90268.t1 | AT4G04840 | 65.414 | 133 | 46 | 0 | 64 | 196 | 17 | 149 | 1.54e-66 | 201 |
MS.gene90268.t1 | AT4G04830 | 70.149 | 134 | 30 | 1 | 65 | 198 | 2 | 125 | 1.58e-66 | 200 |
MS.gene90268.t1 | AT4G21860 | 72.917 | 96 | 26 | 0 | 52 | 147 | 54 | 149 | 3.57e-49 | 158 |
MS.gene90268.t1 | AT4G04810 | 80.519 | 77 | 15 | 0 | 71 | 147 | 8 | 84 | 1.52e-43 | 141 |
MS.gene90268.t1 | AT4G21850 | 66.667 | 87 | 29 | 0 | 61 | 147 | 5 | 91 | 8.93e-42 | 137 |
MS.gene90268.t1 | AT1G53670 | 44.286 | 140 | 64 | 3 | 66 | 193 | 57 | 194 | 7.89e-34 | 119 |
MS.gene90268.t1 | AT1G53670 | 40.714 | 140 | 62 | 4 | 66 | 193 | 57 | 187 | 1.67e-27 | 103 |
Find 76 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCATTCTTCCTCCGATTTC+TGG | 0.041403 | 4.2:-20287646 | None:intergenic |
GCCTTCTATGAGGGTGTTCC+TGG | 0.207845 | 4.2:+20290511 | MS.gene90268:CDS |
GGAGAATATGACAAATTCTT+TGG | 0.249999 | 4.2:+20290406 | MS.gene90268:CDS |
GGGTGGGGTGAAGGTGAATT+TGG | 0.259093 | 4.2:-20287531 | None:intergenic |
ATTTCTATCCTCATTCCATC+TGG | 0.297903 | 4.2:-20290671 | None:intergenic |
CATCTCGGTCATGTATTTAA+AGG | 0.300561 | 4.2:+20290716 | MS.gene90268:CDS |
TTGTCATATTCTCCTGTTCC+AGG | 0.323050 | 4.2:-20290397 | None:intergenic |
GAGAATATGACAAATTCTTT+GGG | 0.337073 | 4.2:+20290407 | MS.gene90268:CDS |
CATTGTAAATAACTAGGAAT+TGG | 0.348681 | 4.2:-20290807 | None:intergenic |
TCTACAGTTGTGCAGGTTGC+GGG | 0.382998 | 4.2:+20290437 | MS.gene90268:CDS |
TCAACAACAAAATTCAATTC+CGG | 0.394212 | 4.2:+20290475 | MS.gene90268:CDS |
GAGAGAGTTGGGTGGGGTGA+AGG | 0.399554 | 4.2:-20287540 | None:intergenic |
ACAAAATTCAATTCCGGTTG+TGG | 0.401214 | 4.2:+20290481 | MS.gene90268:CDS |
TCCTGGCTCGGTCCAGAAAT+CGG | 0.412246 | 4.2:+20287634 | MS.gene90268:CDS |
GTCTACAGTTGTGCAGGTTG+CGG | 0.417871 | 4.2:+20290436 | MS.gene90268:CDS |
TCCGATTTCTGGACCGAGCC+AGG | 0.422097 | 4.2:-20287635 | None:intergenic |
GACGCAATGGCGTTCGTTCG+TGG | 0.423290 | 4.2:-20290756 | None:intergenic |
TCCAGGAACACCCTCATAGA+AGG | 0.426613 | 4.2:-20290512 | None:intergenic |
CTCAGAATTCGAAACTGCTC+AGG | 0.426783 | 4.2:-20287683 | None:intergenic |
GAGATGGTAGGGAGAGAGTT+GGG | 0.431155 | 4.2:-20287551 | None:intergenic |
ATGTCTGCTGCACCTACTCC+TGG | 0.438702 | 4.2:+20287617 | MS.gene90268:CDS |
TTGGAGTTGAAGAGAAAGGT+AGG | 0.444884 | 4.2:-20287512 | None:intergenic |
GTTAGAACAAATTGAGGAGA+TGG | 0.444988 | 4.2:-20287489 | None:intergenic |
ACAAATTGAGGAGATGGGTT+TGG | 0.448728 | 4.2:-20287483 | None:intergenic |
TGCTGCACCTACTCCTGGCT+CGG | 0.454251 | 4.2:+20287622 | MS.gene90268:CDS |
ATCCTCATTCCATCTGGGTC+CGG | 0.459799 | 4.2:-20290665 | None:intergenic |
GAAGGCTGGCCAGCCACAAC+CGG | 0.459992 | 4.2:-20290494 | None:intergenic |
TTTCTATCCTCATTCCATCT+GGG | 0.463849 | 4.2:-20290670 | None:intergenic |
AATTCAATTCCGGTTGTGGC+TGG | 0.467338 | 4.2:+20290485 | MS.gene90268:CDS |
TTATCAAGGTACCCTGGAAC+AGG | 0.467778 | 4.2:+20290385 | MS.gene90268:intron |
AAATAACATGTGCTGCTTGT+GGG | 0.473497 | 4.2:+20290690 | MS.gene90268:CDS |
ACGCAATGGCGTTCGTTCGT+GGG | 0.474948 | 4.2:-20290755 | None:intergenic |
GAGGGAGTCTACAGTTGTGC+AGG | 0.478161 | 4.2:+20290430 | MS.gene90268:CDS |
TCCAGAAATCGGAGGAAGAA+TGG | 0.490874 | 4.2:+20287645 | MS.gene90268:CDS |
AGGAGTAGGTGCAGCAGACA+TGG | 0.492353 | 4.2:-20287615 | None:intergenic |
GGAGATGGTAGGGAGAGAGT+TGG | 0.494986 | 4.2:-20287552 | None:intergenic |
GAATTTGGAGTTGAAGAGAA+AGG | 0.496737 | 4.2:-20287516 | None:intergenic |
TTAGAACAAATTGAGGAGAT+GGG | 0.498670 | 4.2:-20287488 | None:intergenic |
TGGTAGGGAGAGAGTTGGGT+GGG | 0.499556 | 4.2:-20287547 | None:intergenic |
TGGAGTTGAAGAGAAAGGTA+GGG | 0.502554 | 4.2:-20287511 | None:intergenic |
ATGGTAGGGAGAGAGTTGGG+TGG | 0.512379 | 4.2:-20287548 | None:intergenic |
GTAAATAACTAGGAATTGGC+TGG | 0.513940 | 4.2:-20290803 | None:intergenic |
TTTCGAATTCTGAGGCAGAA+AGG | 0.526917 | 4.2:+20287692 | MS.gene90268:CDS |
TTTGTTGTTGACTTGTAGAG+TGG | 0.535127 | 4.2:-20290463 | None:intergenic |
ACCACGCTTCGGCTGACGAA+TGG | 0.535443 | 4.2:-20287573 | None:intergenic |
TGGCTGGCCAGCCTTCTATG+AGG | 0.541767 | 4.2:+20290501 | MS.gene90268:CDS |
GGTAGGGTTAGAACAAATTG+AGG | 0.542736 | 4.2:-20287495 | None:intergenic |
TGGCGTTCGTTCGTGGGTGT+CGG | 0.543990 | 4.2:-20290749 | None:intergenic |
GGTCATGTATTTAAAGGTGA+AGG | 0.544366 | 4.2:+20290722 | MS.gene90268:CDS |
GTGACGTTGAGAGAAGAAAG+AGG | 0.545278 | 4.2:-20287461 | None:intergenic |
TATGACAAATTCTTTGGGGA+GGG | 0.549093 | 4.2:+20290412 | MS.gene90268:CDS |
GGTAGGGAGAGAGTTGGGTG+GGG | 0.550203 | 4.2:-20287546 | None:intergenic |
CCACCGCGAAAACCACGCTT+CGG | 0.552502 | 4.2:-20287584 | None:intergenic |
GGCTGGCCAGCCTTCTATGA+GGG | 0.553211 | 4.2:+20290502 | MS.gene90268:CDS |
ACGTGGCGGTTTATAGCTCC+AGG | 0.554221 | 4.2:-20290529 | None:intergenic |
TGTCATATTCTCCTGTTCCA+GGG | 0.557941 | 4.2:-20290396 | None:intergenic |
AGATGACGGTGAATATACTA+AGG | 0.568416 | 4.2:+20287432 | None:intergenic |
TCCATTCGTCAGCCGAAGCG+TGG | 0.570636 | 4.2:+20287572 | MS.gene90268:CDS |
GGCTGACGAATGGAGATGGT+AGG | 0.572122 | 4.2:-20287563 | None:intergenic |
CTTCGGCTGACGAATGGAGA+TGG | 0.572282 | 4.2:-20287567 | None:intergenic |
GTATTATTATCAAGGTACCC+TGG | 0.575400 | 4.2:+20290379 | MS.gene90268:intron |
TCAGAATTCGAAACTGCTCA+GGG | 0.577261 | 4.2:-20287682 | None:intergenic |
GTGAAATGCTATTGACGCAA+TGG | 0.577428 | 4.2:-20290769 | None:intergenic |
GGAACACCCTCATAGAAGGC+TGG | 0.578117 | 4.2:-20290508 | None:intergenic |
GAAATAACATGTGCTGCTTG+TGG | 0.579814 | 4.2:+20290689 | MS.gene90268:CDS |
AGCCGGACCCAGATGGAATG+AGG | 0.581127 | 4.2:+20290663 | MS.gene90268:intron |
AATAACATGTGCTGCTTGTG+GGG | 0.586603 | 4.2:+20290691 | MS.gene90268:CDS |
ATATGACAAATTCTTTGGGG+AGG | 0.589338 | 4.2:+20290411 | MS.gene90268:CDS |
CACCACCAGCCGGACCCAGA+TGG | 0.591335 | 4.2:+20290656 | MS.gene90268:intron |
CTGAGCAGTTTCGAATTCTG+AGG | 0.595443 | 4.2:+20287684 | MS.gene90268:CDS |
GCTGACGAATGGAGATGGTA+GGG | 0.596509 | 4.2:-20287562 | None:intergenic |
TTCTGGACCGAGCCAGGAGT+AGG | 0.614503 | 4.2:-20287629 | None:intergenic |
AGAATATGACAAATTCTTTG+GGG | 0.674356 | 4.2:+20290408 | MS.gene90268:CDS |
TGGCTCGGTCCAGAAATCGG+AGG | 0.678535 | 4.2:+20287637 | MS.gene90268:CDS |
ATAACATGTGCTGCTTGTGG+GGG | 0.687021 | 4.2:+20290692 | MS.gene90268:CDS |
CAGAATTCGAAACTGCTCAG+GGG | 0.702893 | 4.2:-20287681 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAATTATATATGATAGT+GGG | - | chr4.2:20290009-20290028 | None:intergenic | 10.0% |
!! | TATATAATTATATATGATAG+TGG | - | chr4.2:20290010-20290029 | None:intergenic | 10.0% |
!!! | ACTTAATTGATTTTAAATTT+TGG | - | chr4.2:20288991-20289010 | None:intergenic | 10.0% |
!!! | AGTTTTATTTTTTAAGTAAA+AGG | + | chr4.2:20288919-20288938 | MS.gene90268:intron | 10.0% |
!!! | ATTAGTTTTTTTGAAATAAA+TGG | + | chr4.2:20289198-20289217 | MS.gene90268:intron | 10.0% |
!!! | TTAGTTTTTTTGAAATAAAT+GGG | + | chr4.2:20289199-20289218 | MS.gene90268:intron | 10.0% |
!! | TCTAACATGATAATATTAAT+GGG | + | chr4.2:20289877-20289896 | MS.gene90268:intron | 15.0% |
!! | TTCTAACATGATAATATTAA+TGG | + | chr4.2:20289876-20289895 | MS.gene90268:intron | 15.0% |
!!! | ATGATTTTGTCATATTAAAT+TGG | + | chr4.2:20290106-20290125 | MS.gene90268:intron | 15.0% |
!!! | TAGTTTTTTTGAAATAAATG+GGG | + | chr4.2:20289200-20289219 | MS.gene90268:intron | 15.0% |
!!! | TTTGTTTATAATTTTTTTGG+AGG | + | chr4.2:20290040-20290059 | MS.gene90268:intron | 15.0% |
!! | AAAAATTGTCCCAAAATATA+TGG | + | chr4.2:20288468-20288487 | MS.gene90268:intron | 20.0% |
!! | AAATAATGTGATACAGAAAA+TGG | - | chr4.2:20289349-20289368 | None:intergenic | 20.0% |
!! | AATATATTAGCACAAGAAAT+GGG | - | chr4.2:20288808-20288827 | None:intergenic | 20.0% |
!! | ATTAACATATGGAGATATAA+GGG | + | chr4.2:20289532-20289551 | MS.gene90268:intron | 20.0% |
!! | ATTATTATCCACACAATATA+TGG | + | chr4.2:20288230-20288249 | MS.gene90268:intron | 20.0% |
!! | TAAACATGCAATAAATTTGT+TGG | + | chr4.2:20289807-20289826 | MS.gene90268:intron | 20.0% |
!! | TATTAATTAGAGTGTAGAAT+TGG | - | chr4.2:20288532-20288551 | None:intergenic | 20.0% |
!! | TATTATAACATTTAAGTCTG+TGG | + | chr4.2:20289264-20289283 | MS.gene90268:intron | 20.0% |
!! | TTTATTATGGCTTAATGAAA+TGG | + | chr4.2:20287969-20287988 | MS.gene90268:intron | 20.0% |
!! | TTTCATAGTACTATATTACA+TGG | - | chr4.2:20287930-20287949 | None:intergenic | 20.0% |
!!! | ACTTTAACTTCATTTTCTAA+AGG | + | chr4.2:20288036-20288055 | MS.gene90268:intron | 20.0% |
!!! | ATATTTTGCAAATATACATG+GGG | + | chr4.2:20288888-20288907 | MS.gene90268:intron | 20.0% |
!!! | ATCAAAAAGCTCAATTATTT+TGG | + | chr4.2:20288718-20288737 | MS.gene90268:intron | 20.0% |
!!! | ATGTTTTGGTATTATTATCA+AGG | + | chr4.2:20290371-20290390 | MS.gene90268:intron | 20.0% |
!!! | CATATTAAATTGGTAATCTT+AGG | + | chr4.2:20290116-20290135 | MS.gene90268:intron | 20.0% |
!!! | CATATTTTGCAAATATACAT+GGG | + | chr4.2:20288887-20288906 | MS.gene90268:intron | 20.0% |
!!! | TATATCCTTTTCCATTTAAA+GGG | - | chr4.2:20289508-20289527 | None:intergenic | 20.0% |
!!! | TCAAAAAGCTCAATTATTTT+GGG | + | chr4.2:20288719-20288738 | MS.gene90268:intron | 20.0% |
!!! | TGAAACACATAAATTTTATC+AGG | - | chr4.2:20290638-20290657 | None:intergenic | 20.0% |
!!! | TTTCACATGTTATATCTTTT+TGG | + | chr4.2:20290168-20290187 | MS.gene90268:intron | 20.0% |
! | AAAGGTGATTAATATTGCAT+TGG | - | chr4.2:20288507-20288526 | None:intergenic | 25.0% |
! | AGAATATGACAAATTCTTTG+GGG | + | chr4.2:20290408-20290427 | MS.gene90268:CDS | 25.0% |
! | ATATAGTACTATGAAAACCA+TGG | + | chr4.2:20287934-20287953 | MS.gene90268:intron | 25.0% |
! | ATATTAAACTCAAACAGTTC+AGG | - | chr4.2:20290229-20290248 | None:intergenic | 25.0% |
! | ATCATACTTGAAATGTAACT+AGG | + | chr4.2:20289085-20289104 | MS.gene90268:intron | 25.0% |
! | ATTACATATGCTCAATTATG+CGG | - | chr4.2:20289378-20289397 | None:intergenic | 25.0% |
! | CAATATATTAGCACAAGAAA+TGG | - | chr4.2:20288809-20288828 | None:intergenic | 25.0% |
! | GAGAATATGACAAATTCTTT+GGG | + | chr4.2:20290407-20290426 | MS.gene90268:CDS | 25.0% |
! | GATTAACATATGGAGATATA+AGG | + | chr4.2:20289531-20289550 | MS.gene90268:intron | 25.0% |
! | GGTAAGAAAAAAATTCTGAA+TGG | - | chr4.2:20288787-20288806 | None:intergenic | 25.0% |
! | TAGAGTTACAAAAAAAGTAG+AGG | - | chr4.2:20289127-20289146 | None:intergenic | 25.0% |
! | TATCATGTTAGAAGATTTAG+TGG | - | chr4.2:20289869-20289888 | None:intergenic | 25.0% |
! | TCAAAAACTTATAACACGAA+TGG | + | chr4.2:20288317-20288336 | MS.gene90268:intron | 25.0% |
! | TCAACAACAAAATTCAATTC+CGG | + | chr4.2:20290475-20290494 | MS.gene90268:CDS | 25.0% |
! | TCAATTAAGTACAAACACTA+TGG | + | chr4.2:20289001-20289020 | MS.gene90268:intron | 25.0% |
! | TCATACTTGAAATGTAACTA+GGG | + | chr4.2:20289086-20289105 | MS.gene90268:intron | 25.0% |
! | TGTAACTCTATGTTGAATTA+AGG | + | chr4.2:20289137-20289156 | MS.gene90268:intron | 25.0% |
! | TGTTTGTGTGATATTATCAT+AGG | + | chr4.2:20289579-20289598 | MS.gene90268:intron | 25.0% |
! | TTAAATGGAAAAGGATATAG+AGG | + | chr4.2:20289509-20289528 | MS.gene90268:intron | 25.0% |
! | TTAGAAGTAATTTCAGAGAT+GGG | - | chr4.2:20288357-20288376 | None:intergenic | 25.0% |
! | TTGAGCTATTTATCCAAATA+GGG | + | chr4.2:20287872-20287891 | MS.gene90268:intron | 25.0% |
!! | AACAAAAGGCTCAATTATTT+TGG | - | chr4.2:20288446-20288465 | None:intergenic | 25.0% |
!! | ACAAAAGGCTCAATTATTTT+GGG | - | chr4.2:20288445-20288464 | None:intergenic | 25.0% |
!! | ATAGCATTTTATCTTACTTG+AGG | + | chr4.2:20289905-20289924 | MS.gene90268:intron | 25.0% |
!! | ATTAGAAGTTTTGCAGTAAA+TGG | + | chr4.2:20289693-20289712 | MS.gene90268:intron | 25.0% |
!! | ATTCGTGTTATAAGTTTTTG+AGG | - | chr4.2:20288318-20288337 | None:intergenic | 25.0% |
!! | CATTTTCTTGTTAACAGAAA+AGG | - | chr4.2:20290354-20290373 | None:intergenic | 25.0% |
!! | CTATATCCTTTTCCATTTAA+AGG | - | chr4.2:20289509-20289528 | None:intergenic | 25.0% |
!! | CTGTTAACAAGAAAATGTTT+TGG | + | chr4.2:20290357-20290376 | MS.gene90268:intron | 25.0% |
!! | GATGTGACAATTATAGTTTT+GGG | + | chr4.2:20289056-20289075 | MS.gene90268:intron | 25.0% |
!! | GCATATTTTGCAAATATACA+TGG | + | chr4.2:20288886-20288905 | MS.gene90268:intron | 25.0% |
!! | TGATGTGACAATTATAGTTT+TGG | + | chr4.2:20289055-20289074 | MS.gene90268:intron | 25.0% |
!!! | GGGACAATTTTTTTAACAAA+AGG | - | chr4.2:20288460-20288479 | None:intergenic | 25.0% |
!!! | GTAAGTGGTAAGTTTTATTA+TGG | + | chr4.2:20287956-20287975 | MS.gene90268:intron | 25.0% |
!!! | TTTTTTGAAATAAATGGGGT+CGG | + | chr4.2:20289204-20289223 | MS.gene90268:intron | 25.0% |
AATGCATCAATACTTAGACA+AGG | + | chr4.2:20288607-20288626 | MS.gene90268:intron | 30.0% | |
ATAAAACTTACCACTTACCA+TGG | - | chr4.2:20287954-20287973 | None:intergenic | 30.0% | |
ATTGCATTGGAAAGTGAAAT+GGG | - | chr4.2:20288494-20288513 | None:intergenic | 30.0% | |
ATTTATCCAAATAGGGAACA+GGG | + | chr4.2:20287879-20287898 | MS.gene90268:intron | 30.0% | |
CAATTGTTAAATGTGTAGTC+TGG | + | chr4.2:20290080-20290099 | MS.gene90268:intron | 30.0% | |
CCACTTTGCATTTATGATAA+TGG | + | chr4.2:20288582-20288601 | MS.gene90268:intron | 30.0% | |
CCATTATCATAAATGCAAAG+TGG | - | chr4.2:20288585-20288604 | None:intergenic | 30.0% | |
GAAGTTAGACTAGAAAAGTA+AGG | + | chr4.2:20287901-20287920 | MS.gene90268:intron | 30.0% | |
GGAGAATATGACAAATTCTT+TGG | + | chr4.2:20290406-20290425 | MS.gene90268:CDS | 30.0% | |
GGATATAGAGGATTAACATA+TGG | + | chr4.2:20289521-20289540 | MS.gene90268:intron | 30.0% | |
GTTAGAAGTAATTTCAGAGA+TGG | - | chr4.2:20288358-20288377 | None:intergenic | 30.0% | |
GTTGAGCTATTTATCCAAAT+AGG | + | chr4.2:20287871-20287890 | MS.gene90268:intron | 30.0% | |
TAAGAACAAATAAACTCACG+TGG | - | chr4.2:20290549-20290568 | None:intergenic | 30.0% | |
TAGAGTGTAGAATTGGAAAA+AGG | - | chr4.2:20288525-20288544 | None:intergenic | 30.0% | |
TATTGCATTGGAAAGTGAAA+TGG | - | chr4.2:20288495-20288514 | None:intergenic | 30.0% | |
TATTTATCCAAATAGGGAAC+AGG | + | chr4.2:20287878-20287897 | MS.gene90268:intron | 30.0% | |
TTAGAACAAATTGAGGAGAT+GGG | - | chr4.2:20287491-20287510 | None:intergenic | 30.0% | |
! | ATAAGGGCTTCATATGATTT+TGG | + | chr4.2:20289548-20289567 | MS.gene90268:intron | 30.0% |
! | ATCCACACAATATATGGTTT+TGG | + | chr4.2:20288236-20288255 | MS.gene90268:intron | 30.0% |
! | TAACGACTTTTCAACTGATT+TGG | + | chr4.2:20288945-20288964 | MS.gene90268:intron | 30.0% |
! | TGAAATGGGCCATATATTTT+GGG | - | chr4.2:20288480-20288499 | None:intergenic | 30.0% |
! | TTTGTTGGAGTATGGTTTTT+GGG | + | chr4.2:20289822-20289841 | MS.gene90268:intron | 30.0% |
! | TTTTAGGCTTTTTGTGGTTA+AGG | + | chr4.2:20289657-20289676 | MS.gene90268:intron | 30.0% |
!! | ACTTCATTTTCTAAAGGAGA+AGG | + | chr4.2:20288042-20288061 | MS.gene90268:intron | 30.0% |
!! | ATTTGTTGGAGTATGGTTTT+TGG | + | chr4.2:20289821-20289840 | MS.gene90268:intron | 30.0% |
!! | CTCTGAAATTACTTCTAACA+TGG | + | chr4.2:20288359-20288378 | MS.gene90268:intron | 30.0% |
!! | CTTCATTTTCTAAAGGAGAA+GGG | + | chr4.2:20288043-20288062 | MS.gene90268:intron | 30.0% |
!! | GCAATAAATTTGTTGGAGTA+TGG | + | chr4.2:20289814-20289833 | MS.gene90268:intron | 30.0% |
!! | TCAAGTTGACAGAAAAGTAT+CGG | - | chr4.2:20290289-20290308 | None:intergenic | 30.0% |
!!! | AAAGCTCAATTATTTTGGGA+CGG | + | chr4.2:20288723-20288742 | MS.gene90268:intron | 30.0% |
AAGATTTCCTACATAGAAGC+TGG | - | chr4.2:20288001-20288020 | None:intergenic | 35.0% | |
ACAAAATTCAATTCCGGTTG+TGG | + | chr4.2:20290481-20290500 | MS.gene90268:CDS | 35.0% | |
ACTATGAAAACCATGGTAAG+TGG | + | chr4.2:20287941-20287960 | MS.gene90268:intron | 35.0% | |
AGAAGCAGAGGAGATTAAAT+TGG | + | chr4.2:20289617-20289636 | MS.gene90268:intron | 35.0% | |
AGCCAAAACCATATATTGTG+TGG | - | chr4.2:20288241-20288260 | None:intergenic | 35.0% | |
ATAGCTCAACTAAGAGCTTA+TGG | - | chr4.2:20287861-20287880 | None:intergenic | 35.0% | |
ATCCAAAGATAGTGAAGAGA+AGG | - | chr4.2:20290577-20290596 | None:intergenic | 35.0% | |
ATTTCTATCCTCATTCCATC+TGG | - | chr4.2:20290674-20290693 | None:intergenic | 35.0% | |
CATCTCGGTCATGTATTTAA+AGG | + | chr4.2:20290716-20290735 | MS.gene90268:CDS | 35.0% | |
CTTATCAGAGATGCGAATTA+AGG | + | chr4.2:20289310-20289329 | MS.gene90268:intron | 35.0% | |
GAAGCAGAGGAGATTAAATT+GGG | + | chr4.2:20289618-20289637 | MS.gene90268:intron | 35.0% | |
GAGAGATGAAATAACGTACT+CGG | - | chr4.2:20287720-20287739 | None:intergenic | 35.0% | |
GATGATCTGGTTAAGTTAAG+TGG | + | chr4.2:20288072-20288091 | MS.gene90268:intron | 35.0% | |
GGTCATGTATTTAAAGGTGA+AGG | + | chr4.2:20290722-20290741 | MS.gene90268:CDS | 35.0% | |
GTGATATTATCATAGGCATG+TGG | + | chr4.2:20289586-20289605 | MS.gene90268:intron | 35.0% | |
GTTAGAACAAATTGAGGAGA+TGG | - | chr4.2:20287492-20287511 | None:intergenic | 35.0% | |
TAACATGTGAAACATACTGC+AGG | - | chr4.2:20290160-20290179 | None:intergenic | 35.0% | |
TCATGCCCTTTAAATGGAAA+AGG | + | chr4.2:20289500-20289519 | MS.gene90268:intron | 35.0% | |
TGCAGTAAATGGTTAGAGAA+GGG | + | chr4.2:20289704-20289723 | MS.gene90268:intron | 35.0% | |
TTGCAGTAAATGGTTAGAGA+AGG | + | chr4.2:20289703-20289722 | MS.gene90268:intron | 35.0% | |
TTTCTATCCTCATTCCATCT+GGG | - | chr4.2:20290673-20290692 | None:intergenic | 35.0% | |
! | AGAGATGGGTTCAAAAATGT+TGG | - | chr4.2:20288343-20288362 | None:intergenic | 35.0% |
! | ATATGACAAATTCTTTGGGG+AGG | + | chr4.2:20290411-20290430 | MS.gene90268:CDS | 35.0% |
! | GAATTTGGAGTTGAAGAGAA+AGG | - | chr4.2:20287519-20287538 | None:intergenic | 35.0% |
! | GCATTTTATCTTACTTGAGG+TGG | + | chr4.2:20289908-20289927 | MS.gene90268:intron | 35.0% |
! | GTATTATTATCAAGGTACCC+TGG | + | chr4.2:20290379-20290398 | MS.gene90268:intron | 35.0% |
! | GTGAAATGGGCCATATATTT+TGG | - | chr4.2:20288481-20288500 | None:intergenic | 35.0% |
! | TATGACAAATTCTTTGGGGA+GGG | + | chr4.2:20290412-20290431 | MS.gene90268:CDS | 35.0% |
! | TGAGGTTAGAAGAGTTTTTG+AGG | - | chr4.2:20288300-20288319 | None:intergenic | 35.0% |
! | TTGTGGTTAAGGAGATGTTT+TGG | + | chr4.2:20289668-20289687 | MS.gene90268:intron | 35.0% |
! | TTGTTGGAGTATGGTTTTTG+GGG | + | chr4.2:20289823-20289842 | MS.gene90268:intron | 35.0% |
! | TTTTACTCACGCTCTTTGAA+AGG | + | chr4.2:20289453-20289472 | MS.gene90268:intron | 35.0% |
!! | AAATAACATGTGCTGCTTGT+GGG | + | chr4.2:20290690-20290709 | MS.gene90268:CDS | 35.0% |
!! | ATATGATAGTGGGTGATAGT+GGG | - | chr4.2:20289999-20290018 | None:intergenic | 35.0% |
!! | GCAATGTTTTAGGCTTTTTG+TGG | + | chr4.2:20289651-20289670 | MS.gene90268:intron | 35.0% |
!! | TATATGATAGTGGGTGATAG+TGG | - | chr4.2:20290000-20290019 | None:intergenic | 35.0% |
!! | TTTGTTGTTGACTTGTAGAG+TGG | - | chr4.2:20290466-20290485 | None:intergenic | 35.0% |
!!! | AAGGCTCAATTATTTTGGGA+CGG | - | chr4.2:20288441-20288460 | None:intergenic | 35.0% |
ACAAACACTATGGCTGACAT+CGG | + | chr4.2:20289011-20289030 | MS.gene90268:intron | 40.0% | |
AGAAGTTTAGCAGGTGTCAA+GGG | + | chr4.2:20289741-20289760 | MS.gene90268:intron | 40.0% | |
AGTAAATGGTTAGAGAAGGG+AGG | + | chr4.2:20289707-20289726 | MS.gene90268:intron | 40.0% | |
ATTATCATAGGCATGTGGCA+GGG | + | chr4.2:20289591-20289610 | MS.gene90268:intron | 40.0% | |
CTGTACTCATGCCCTTTAAA+TGG | + | chr4.2:20289494-20289513 | MS.gene90268:intron | 40.0% | |
GAACAAATAAACTCACGTGG+CGG | - | chr4.2:20290546-20290565 | None:intergenic | 40.0% | |
GGTAGGGTTAGAACAAATTG+AGG | - | chr4.2:20287498-20287517 | None:intergenic | 40.0% | |
GTGAAATGCTATTGACGCAA+TGG | - | chr4.2:20290772-20290791 | None:intergenic | 40.0% | |
TAACTTCCCTGTTCCCTATT+TGG | - | chr4.2:20287888-20287907 | None:intergenic | 40.0% | |
TAGAAGTTTAGCAGGTGTCA+AGG | + | chr4.2:20289740-20289759 | MS.gene90268:intron | 40.0% | |
TATTATCATAGGCATGTGGC+AGG | + | chr4.2:20289590-20289609 | MS.gene90268:intron | 40.0% | |
TCAGAATTCGAAACTGCTCA+GGG | - | chr4.2:20287685-20287704 | None:intergenic | 40.0% | |
TGATGCAGTAGAAGTTTAGC+AGG | + | chr4.2:20289732-20289751 | MS.gene90268:intron | 40.0% | |
TGCCTTCTCTTCACTATCTT+TGG | + | chr4.2:20290572-20290591 | MS.gene90268:intron | 40.0% | |
TGCTCAGTGTCATGTAAGTT+AGG | + | chr4.2:20288159-20288178 | MS.gene90268:intron | 40.0% | |
TGGAGTTGAAGAGAAAGGTA+GGG | - | chr4.2:20287514-20287533 | None:intergenic | 40.0% | |
TGGATAGAACATGCTGAAAG+AGG | + | chr4.2:20288965-20288984 | MS.gene90268:intron | 40.0% | |
TGTCATATTCTCCTGTTCCA+GGG | - | chr4.2:20290399-20290418 | None:intergenic | 40.0% | |
TTGGAGTTGAAGAGAAAGGT+AGG | - | chr4.2:20287515-20287534 | None:intergenic | 40.0% | |
TTGTCATATTCTCCTGTTCC+AGG | - | chr4.2:20290400-20290419 | None:intergenic | 40.0% | |
! | ACAAATTGAGGAGATGGGTT+TGG | - | chr4.2:20287486-20287505 | None:intergenic | 40.0% |
!! | AATAACATGTGCTGCTTGTG+GGG | + | chr4.2:20290691-20290710 | MS.gene90268:CDS | 40.0% |
!! | GAAATAACATGTGCTGCTTG+TGG | + | chr4.2:20290689-20290708 | MS.gene90268:CDS | 40.0% |
!! | TTTCGAATTCTGAGGCAGAA+AGG | + | chr4.2:20287692-20287711 | MS.gene90268:CDS | 40.0% |
!!! | CTCAATTATTTTGGGACGGA+GGG | + | chr4.2:20288727-20288746 | MS.gene90268:intron | 40.0% |
!!! | CTCAATTATTTTGGGACGGA+GGG | - | chr4.2:20288746-20288727 | None:intergenic | 40.0% |
!!! | TTTTGGGGCAGTGATGTTAT+TGG | + | chr4.2:20289838-20289857 | MS.gene90268:intron | 40.0% |
AATTCAATTCCGGTTGTGGC+TGG | + | chr4.2:20290485-20290504 | MS.gene90268:CDS | 45.0% | |
AGAGAGAGAGAGAGAGAGAA+TGG | - | chr4.2:20288643-20288662 | None:intergenic | 45.0% | |
ATTGTACGCACTTGACGAGA+AGG | + | chr4.2:20288825-20288844 | MS.gene90268:intron | 45.0% | |
CAAACACTATGGCTGACATC+GGG | + | chr4.2:20289012-20289031 | MS.gene90268:intron | 45.0% | |
CAGAATTCGAAACTGCTCAG+GGG | - | chr4.2:20287684-20287703 | None:intergenic | 45.0% | |
CTCAGAATTCGAAACTGCTC+AGG | - | chr4.2:20287686-20287705 | None:intergenic | 45.0% | |
CTGAGCAGTTTCGAATTCTG+AGG | + | chr4.2:20287684-20287703 | MS.gene90268:CDS | 45.0% | |
GAGGAGATTAAATTGGGCAG+AGG | + | chr4.2:20289624-20289643 | MS.gene90268:intron | 45.0% | |
GTGACGTTGAGAGAAGAAAG+AGG | - | chr4.2:20287464-20287483 | None:intergenic | 45.0% | |
TCCAGAAATCGGAGGAAGAA+TGG | + | chr4.2:20287645-20287664 | MS.gene90268:CDS | 45.0% | |
TTATGTGTTTCACCACCAGC+CGG | + | chr4.2:20290646-20290665 | MS.gene90268:intron | 45.0% | |
TTGTACGCACTTGACGAGAA+GGG | + | chr4.2:20288826-20288845 | MS.gene90268:intron | 45.0% | |
TTTCCTACATAGAAGCTGGC+TGG | - | chr4.2:20287997-20288016 | None:intergenic | 45.0% | |
! | AGAAGGGCATGAAGATGATC+TGG | + | chr4.2:20288059-20288078 | MS.gene90268:intron | 45.0% |
! | CAGAGGAGCAGCAATGTTTT+AGG | + | chr4.2:20289641-20289660 | MS.gene90268:intron | 45.0% |
! | TCACGCTCTTTGAAAGGTCA+CGG | + | chr4.2:20289459-20289478 | MS.gene90268:intron | 45.0% |
! | TTATCAAGGTACCCTGGAAC+AGG | + | chr4.2:20290385-20290404 | MS.gene90268:intron | 45.0% |
!! | ATAACATGTGCTGCTTGTGG+GGG | + | chr4.2:20290692-20290711 | MS.gene90268:CDS | 45.0% |
!!! | GCTCAATTATTTTGGGACGG+AGG | + | chr4.2:20288726-20288745 | MS.gene90268:intron | 45.0% |
!!! | GCTCAATTATTTTGGGACGG+AGG | - | chr4.2:20288745-20288726 | None:intergenic | 45.0% |
!!! | ATATTTGTTTATAATTTTTT+TGG | + | chr4.2:20290037-20290056 | MS.gene90268:intron | 5.0% |
ATCCTCATTCCATCTGGGTC+CGG | - | chr4.2:20290668-20290687 | None:intergenic | 50.0% | |
GAGATGGTAGGGAGAGAGTT+GGG | - | chr4.2:20287554-20287573 | None:intergenic | 50.0% | |
GCCATTCTTCCTCCGATTTC+TGG | - | chr4.2:20287649-20287668 | None:intergenic | 50.0% | |
GCTGACGAATGGAGATGGTA+GGG | - | chr4.2:20287565-20287584 | None:intergenic | 50.0% | |
GTCTACAGTTGTGCAGGTTG+CGG | + | chr4.2:20290436-20290455 | MS.gene90268:CDS | 50.0% | |
TCCAGGAACACCCTCATAGA+AGG | - | chr4.2:20290515-20290534 | None:intergenic | 50.0% | |
TCTACAGTTGTGCAGGTTGC+GGG | + | chr4.2:20290437-20290456 | MS.gene90268:CDS | 50.0% | |
ACGCAATGGCGTTCGTTCGT+GGG | - | chr4.2:20290758-20290777 | None:intergenic | 55.0% | |
ACGTGGCGGTTTATAGCTCC+AGG | - | chr4.2:20290532-20290551 | None:intergenic | 55.0% | |
AGGAGTAGGTGCAGCAGACA+TGG | - | chr4.2:20287618-20287637 | None:intergenic | 55.0% | |
ATCATAGGCATGTGGCAGGG+AGG | + | chr4.2:20289594-20289613 | MS.gene90268:intron | 55.0% | |
ATGGTAGGGAGAGAGTTGGG+TGG | - | chr4.2:20287551-20287570 | None:intergenic | 55.0% | |
ATGTCTGCTGCACCTACTCC+TGG | + | chr4.2:20287617-20287636 | MS.gene90268:CDS | 55.0% | |
CTTCGGCTGACGAATGGAGA+TGG | - | chr4.2:20287570-20287589 | None:intergenic | 55.0% | |
GAGCCAGCCAGCTTCTATGT+AGG | + | chr4.2:20287991-20288010 | MS.gene90268:intron | 55.0% | |
GAGGGAGTCTACAGTTGTGC+AGG | + | chr4.2:20290430-20290449 | MS.gene90268:CDS | 55.0% | |
GGAACACCCTCATAGAAGGC+TGG | - | chr4.2:20290511-20290530 | None:intergenic | 55.0% | |
GGAGATGGTAGGGAGAGAGT+TGG | - | chr4.2:20287555-20287574 | None:intergenic | 55.0% | |
GGCTGACGAATGGAGATGGT+AGG | - | chr4.2:20287566-20287585 | None:intergenic | 55.0% | |
GGGTGGGGTGAAGGTGAATT+TGG | - | chr4.2:20287534-20287553 | None:intergenic | 55.0% | |
TGGTAGGGAGAGAGTTGGGT+GGG | - | chr4.2:20287550-20287569 | None:intergenic | 55.0% | |
!! | GCCTTCTATGAGGGTGTTCC+TGG | + | chr4.2:20290511-20290530 | MS.gene90268:CDS | 55.0% |
!! | TCCTGGCTCGGTCCAGAAAT+CGG | + | chr4.2:20287634-20287653 | MS.gene90268:CDS | 55.0% |
ACCACGCTTCGGCTGACGAA+TGG | - | chr4.2:20287576-20287595 | None:intergenic | 60.0% | |
AGCCGGACCCAGATGGAATG+AGG | + | chr4.2:20290663-20290682 | MS.gene90268:intron | 60.0% | |
CACTATGGCTGACATCGGGC+TGG | + | chr4.2:20289016-20289035 | MS.gene90268:intron | 60.0% | |
CCACCGCGAAAACCACGCTT+CGG | - | chr4.2:20287587-20287606 | None:intergenic | 60.0% | |
GACGCAATGGCGTTCGTTCG+TGG | - | chr4.2:20290759-20290778 | None:intergenic | 60.0% | |
GAGAGAGTTGGGTGGGGTGA+AGG | - | chr4.2:20287543-20287562 | None:intergenic | 60.0% | |
GCTGCTTGTGGGGGACATCT+CGG | + | chr4.2:20290701-20290720 | MS.gene90268:CDS | 60.0% | |
GGTAGGGAGAGAGTTGGGTG+GGG | - | chr4.2:20287549-20287568 | None:intergenic | 60.0% | |
TCATTCCATCTGGGTCCGGC+TGG | - | chr4.2:20290664-20290683 | None:intergenic | 60.0% | |
TCCATTCGTCAGCCGAAGCG+TGG | + | chr4.2:20287572-20287591 | MS.gene90268:CDS | 60.0% | |
TGCTGCACCTACTCCTGGCT+CGG | + | chr4.2:20287622-20287641 | MS.gene90268:CDS | 60.0% | |
TGGCGTTCGTTCGTGGGTGT+CGG | - | chr4.2:20290752-20290771 | None:intergenic | 60.0% | |
TTCTGGACCGAGCCAGGAGT+AGG | - | chr4.2:20287632-20287651 | None:intergenic | 60.0% | |
! | CAGCCGAAGCGTGGTTTTCG+CGG | + | chr4.2:20287581-20287600 | MS.gene90268:CDS | 60.0% |
! | GGCTGGCCAGCCTTCTATGA+GGG | + | chr4.2:20290502-20290521 | MS.gene90268:CDS | 60.0% |
! | TCCGATTTCTGGACCGAGCC+AGG | - | chr4.2:20287638-20287657 | None:intergenic | 60.0% |
! | TGGCTGGCCAGCCTTCTATG+AGG | + | chr4.2:20290501-20290520 | MS.gene90268:CDS | 60.0% |
!! | ATGGCTGACATCGGGCTGGT+TGG | + | chr4.2:20289020-20289039 | MS.gene90268:intron | 60.0% |
!! | TGGCTCGGTCCAGAAATCGG+AGG | + | chr4.2:20287637-20287656 | MS.gene90268:CDS | 60.0% |
!! | TGGCTGACATCGGGCTGGTT+GGG | + | chr4.2:20289021-20289040 | MS.gene90268:intron | 60.0% |
GTGGCAGGGAGGAGAAGCAG+AGG | + | chr4.2:20289605-20289624 | MS.gene90268:intron | 65.0% | |
TTCCATCTGGGTCCGGCTGG+TGG | - | chr4.2:20290661-20290680 | None:intergenic | 65.0% | |
! | CCGAAGCGTGGTTTTCGCGG+TGG | + | chr4.2:20287584-20287603 | MS.gene90268:CDS | 65.0% |
! | GAAGGCTGGCCAGCCACAAC+CGG | - | chr4.2:20290497-20290516 | None:intergenic | 65.0% |
CACCACCAGCCGGACCCAGA+TGG | + | chr4.2:20290656-20290675 | MS.gene90268:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 20287434 | 20290817 | 20287434 | ID=MS.gene90268 |
chr4.2 | mRNA | 20287434 | 20290817 | 20287434 | ID=MS.gene90268.t1;Parent=MS.gene90268 |
chr4.2 | exon | 20287434 | 20287720 | 20287434 | ID=MS.gene90268.t1.exon1;Parent=MS.gene90268.t1 |
chr4.2 | CDS | 20287434 | 20287720 | 20287434 | ID=cds.MS.gene90268.t1;Parent=MS.gene90268.t1 |
chr4.2 | exon | 20290393 | 20290549 | 20290393 | ID=MS.gene90268.t1.exon2;Parent=MS.gene90268.t1 |
chr4.2 | CDS | 20290393 | 20290549 | 20290393 | ID=cds.MS.gene90268.t1;Parent=MS.gene90268.t1 |
chr4.2 | exon | 20290665 | 20290817 | 20290665 | ID=MS.gene90268.t1.exon3;Parent=MS.gene90268.t1 |
chr4.2 | CDS | 20290665 | 20290817 | 20290665 | ID=cds.MS.gene90268.t1;Parent=MS.gene90268.t1 |
Gene Sequence |
Protein sequence |