Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90365.t1 | XP_013465608.1 | 97 | 396 | 8 | 2 | 1 | 392 | 1 | 396 | 1.30E-217 | 765.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90365.t1 | P49243 | 70.4 | 405 | 104 | 5 | 1 | 391 | 1 | 403 | 4.8e-160 | 565.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90365.t1 | A0A072VC78 | 97.0 | 396 | 8 | 2 | 1 | 392 | 1 | 396 | 9.4e-218 | 765.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene90365 | 0.812034 | 5.19E-51 | -1.69E-46 |
| MS.gene050128 | MS.gene90365 | 0.83793 | 3.89E-57 | -1.69E-46 |
| MS.gene053559 | MS.gene90365 | 0.827975 | 1.16E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene90365 | 0.807576 | 4.72E-50 | -1.69E-46 |
| MS.gene059708 | MS.gene90365 | 0.800749 | 1.25E-48 | -1.69E-46 |
| MS.gene05984 | MS.gene90365 | 0.801653 | 8.13E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene90365 | 0.809458 | 1.87E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene90365 | 0.800312 | 1.53E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90365.t1 | MTR_2g105100 | 96.970 | 396 | 8 | 2 | 1 | 392 | 1 | 396 | 0.0 | 782 |
| MS.gene90365.t1 | MTR_4g007180 | 71.965 | 346 | 97 | 0 | 47 | 392 | 31 | 376 | 0.0 | 519 |
| MS.gene90365.t1 | MTR_5g009640 | 87.440 | 207 | 7 | 1 | 186 | 392 | 168 | 355 | 5.37e-125 | 365 |
| MS.gene90365.t1 | MTR_7g006210 | 80.488 | 41 | 8 | 0 | 15 | 55 | 13 | 53 | 5.90e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90365.t1 | AT1G62640 | 70.370 | 405 | 104 | 5 | 1 | 391 | 1 | 403 | 0.0 | 577 |
| MS.gene90365.t1 | AT1G62640 | 70.370 | 405 | 104 | 5 | 1 | 391 | 1 | 403 | 0.0 | 577 |
Find 0 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAGATAAATAAATATAT+TGG | - | 15084:47783-47802 | MS.gene90365:intron | 10.0% |
| !! | AAAAAGATTCTAAATACTTA+TGG | + | 15084:48280-48299 | None:intergenic | 15.0% |
| !! | AAAAGATTCTAAATACTTAT+GGG | + | 15084:48279-48298 | None:intergenic | 15.0% |
| !! | AGATAAATAAATATATTGGT+TGG | - | 15084:47787-47806 | MS.gene90365:intron | 15.0% |
| !!! | ATAAGTATTTAGAATCTTTT+TGG | - | 15084:48279-48298 | MS.gene90365:CDS | 15.0% |
| !!! | TGATTATTTTTTATTCAACA+AGG | - | 15084:49712-49731 | MS.gene90365:intron | 15.0% |
| !!! | TTATTTTTAATCACACAAAT+GGG | - | 15084:47277-47296 | MS.gene90365:CDS | 15.0% |
| !!! | TTTATTTTTAATCACACAAA+TGG | - | 15084:47276-47295 | MS.gene90365:CDS | 15.0% |
| !! | AATAAGTTCATTACTTCAAA+AGG | + | 15084:49037-49056 | None:intergenic | 20.0% |
| !! | AATAATGCATTTGATTCAAA+TGG | - | 15084:49978-49997 | MS.gene90365:CDS | 20.0% |
| !! | TCATATCTTGTGAAAATATA+AGG | + | 15084:49667-49686 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTAGCTCTAAAGT+CGG | + | 15084:47389-47408 | None:intergenic | 20.0% |
| !!! | GATTATTATTTTTCTGAACA+CGG | - | 15084:48573-48592 | MS.gene90365:intron | 20.0% |
| !!! | TTCAGCATTTTAGTTATTAT+AGG | - | 15084:47417-47436 | MS.gene90365:intron | 20.0% |
| !!! | TTTACAGATTTTTGATTCAA+GGG | - | 15084:47592-47611 | MS.gene90365:CDS | 20.0% |
| ! | AAAATACTATACAAGTTCTG+AGG | - | 15084:49634-49653 | MS.gene90365:intron | 25.0% |
| ! | AAATACTTATGGGATTATCT+TGG | + | 15084:48269-48288 | None:intergenic | 25.0% |
| ! | AATACTTATGGGATTATCTT+GGG | + | 15084:48268-48287 | None:intergenic | 25.0% |
| ! | AATATAAGGTCAATATCATC+AGG | + | 15084:48433-48452 | None:intergenic | 25.0% |
| ! | ACAAATTAATAGTTGCACAT+TGG | + | 15084:49494-49513 | None:intergenic | 25.0% |
| ! | AGTTATTATAGGTTAGAATC+AGG | - | 15084:47428-47447 | MS.gene90365:intron | 25.0% |
| ! | ATATCGAATTTGTCTGATTA+TGG | - | 15084:50419-50438 | MS.gene90365:intron | 25.0% |
| ! | ATGAACAAATGTGAACATTT+AGG | + | 15084:47487-47506 | None:intergenic | 25.0% |
| ! | GAGATATAAATTGATGTCAT+TGG | - | 15084:49754-49773 | MS.gene90365:intron | 25.0% |
| ! | GTTATTATAGGTTAGAATCA+GGG | - | 15084:47429-47448 | MS.gene90365:intron | 25.0% |
| ! | TAATGAACTTATTCCTTTGT+TGG | - | 15084:49044-49063 | MS.gene90365:intron | 25.0% |
| ! | TACTCAATTAATCACTTAGA+GGG | + | 15084:48988-49007 | None:intergenic | 25.0% |
| ! | TCACATTTGTTCATGTTATT+TGG | - | 15084:47493-47512 | MS.gene90365:CDS | 25.0% |
| ! | TTTCAAAATGTCCTAGTTAT+TGG | - | 15084:49314-49333 | MS.gene90365:intron | 25.0% |
| !! | AAAAGTTTGTTCAAAGGATT+AGG | + | 15084:49603-49622 | None:intergenic | 25.0% |
| !! | AAATGTCATTTGAGTTAACT+TGG | - | 15084:50304-50323 | MS.gene90365:intron | 25.0% |
| !! | AACTGATATTTGTTACACAT+TGG | + | 15084:49454-49473 | None:intergenic | 25.0% |
| !! | AATGTCATTTGAGTTAACTT+GGG | - | 15084:50305-50324 | MS.gene90365:intron | 25.0% |
| !! | CACATTTGTTCATGTTATTT+GGG | - | 15084:47494-47513 | MS.gene90365:CDS | 25.0% |
| !! | CGTCTTAAATTTTACAAAAG+AGG | + | 15084:49565-49584 | None:intergenic | 25.0% |
| !!! | AATTTCAAAGTTTTTTGCTC+TGG | - | 15084:47157-47176 | MS.gene90365:CDS | 25.0% |
| !!! | ATGTGCAACTATTAATTTGT+TGG | - | 15084:49494-49513 | MS.gene90365:intron | 25.0% |
| !!! | CTTTACAGATTTTTGATTCA+AGG | - | 15084:47591-47610 | MS.gene90365:CDS | 25.0% |
| AACCAATCAATACTAGATAC+AGG | + | 15084:50134-50153 | None:intergenic | 30.0% | |
| ATCTATTAAAACAATCGCAG+AGG | - | 15084:48926-48945 | MS.gene90365:intron | 30.0% | |
| ATGAATTTCACCACATTTAG+CGG | + | 15084:49262-49281 | None:intergenic | 30.0% | |
| ATTGAGGAAGATGGTTTATT+TGG | - | 15084:49805-49824 | MS.gene90365:intron | 30.0% | |
| GATGATTCTTAAGCTAAACA+TGG | - | 15084:47461-47480 | MS.gene90365:intron | 30.0% | |
| GCATACATGATAATAAATGC+AGG | - | 15084:50337-50356 | MS.gene90365:intron | 30.0% | |
| GGATTATCTTGGGAAAAAAA+GGG | + | 15084:48258-48277 | None:intergenic | 30.0% | |
| GTACTCAATTAATCACTTAG+AGG | + | 15084:48989-49008 | None:intergenic | 30.0% | |
| GTCATAATAAGAAGAATGCT+AGG | - | 15084:47522-47541 | MS.gene90365:CDS | 30.0% | |
| GTTCATAATGTGTCATATTG+AGG | - | 15084:48505-48524 | MS.gene90365:CDS | 30.0% | |
| TAAGATGAAGCTTCCATTTA+TGG | - | 15084:48210-48229 | MS.gene90365:intron | 30.0% | |
| TATTCGTGCATTCAAATGAA+TGG | - | 15084:50035-50054 | MS.gene90365:CDS | 30.0% | |
| TCGATGTGCACATTAATATA+AGG | + | 15084:48447-48466 | None:intergenic | 30.0% | |
| TGAAACAGCAAACCTTATTA+AGG | + | 15084:48117-48136 | None:intergenic | 30.0% | |
| TGCTTAATTACATAGCTAAG+AGG | + | 15084:49906-49925 | None:intergenic | 30.0% | |
| TTCATTTCTGTTAAACTGTC+TGG | - | 15084:49277-49296 | MS.gene90365:intron | 30.0% | |
| TTGATTCAAATGGTTCTTTG+CGG | - | 15084:49988-50007 | MS.gene90365:CDS | 30.0% | |
| TTGTTGATACTAGTGATGAA+TGG | - | 15084:47682-47701 | MS.gene90365:CDS | 30.0% | |
| ! | CAGTTGAAAAGTTTGTTCAA+AGG | + | 15084:49609-49628 | None:intergenic | 30.0% |
| ! | TCACCTACAGGATTTTTATT+GGG | - | 15084:48015-48034 | MS.gene90365:intron | 30.0% |
| ! | TGCTTAGTTTCTGATTTTTG+AGG | - | 15084:47816-47835 | MS.gene90365:CDS | 30.0% |
| ! | TTGTTCATGTTATTTGGGTT+CGG | - | 15084:47499-47518 | MS.gene90365:CDS | 30.0% |
| ! | TTTAATCACACAAATGGGTT+GGG | - | 15084:47282-47301 | MS.gene90365:intron | 30.0% |
| ! | TTTTAATCACACAAATGGGT+TGG | - | 15084:47281-47300 | MS.gene90365:intron | 30.0% |
| !! | CAAGATGTAGTTCTAAGATT+AGG | - | 15084:48166-48185 | MS.gene90365:intron | 30.0% |
| !! | TTCCTGTATCTAGTATTGAT+TGG | - | 15084:50129-50148 | MS.gene90365:intron | 30.0% |
| !! | TTGTGTATCACTTTTCTGAT+TGG | - | 15084:50244-50263 | MS.gene90365:intron | 30.0% |
| !! | TTTGTCAGAGTATTCTGTTT+TGG | - | 15084:47866-47885 | MS.gene90365:intron | 30.0% |
| !!! | CGATTGTTTTAATAGATGAG+TGG | + | 15084:48923-48942 | None:intergenic | 30.0% |
| !!! | GAAATTTTGAAATCGATGAG+TGG | + | 15084:47143-47162 | None:intergenic | 30.0% |
| !!! | TTTTGTGTTTGGTTTTGAGT+GGG | + | 15084:48886-48905 | None:intergenic | 30.0% |
| !!! | TTTTTGTGTTTGGTTTTGAG+TGG | + | 15084:48887-48906 | None:intergenic | 30.0% |
| !!! | TTTTTGTGTTTGTTTTGTGC+AGG | + | 15084:48806-48825 | None:intergenic | 30.0% |
| AAGACAGACAATTCCATTAG+CGG | + | 15084:47355-47374 | None:intergenic | 35.0% | |
| AATAAATGCAGGCAAACCAA+AGG | - | 15084:50348-50367 | MS.gene90365:intron | 35.0% | |
| AGCATCACCAAAAAGAATAC+AGG | + | 15084:49384-49403 | None:intergenic | 35.0% | |
| AGCTAAAACCAAAGACTAAC+CGG | + | 15084:47748-47767 | None:intergenic | 35.0% | |
| ATAGCTAAAAAGCCACAAAC+AGG | - | 15084:48712-48731 | MS.gene90365:intron | 35.0% | |
| ATTACATAGCTAAGAGGAAG+AGG | + | 15084:49900-49919 | None:intergenic | 35.0% | |
| CAACAAGGAGAAGTTCTTTA+TGG | - | 15084:49727-49746 | MS.gene90365:intron | 35.0% | |
| CCGGCAAAAATAAATACAAC+CGG | + | 15084:48063-48082 | None:intergenic | 35.0% | |
| CGGCAAAAATAAATACAACC+GGG | + | 15084:48062-48081 | None:intergenic | 35.0% | |
| CTAATGGAATTGTCTGTCTT+TGG | - | 15084:47355-47374 | MS.gene90365:intron | 35.0% | |
| GCGTCTCATATTATTGAGAA+GGG | - | 15084:49867-49886 | MS.gene90365:intron | 35.0% | |
| GGGATTATCTTGGGAAAAAA+AGG | + | 15084:48259-48278 | None:intergenic | 35.0% | |
| GTAAGAGTAAAAACTGACCT+GGG | + | 15084:47232-47251 | None:intergenic | 35.0% | |
| GTTGGTATCTTTCAGAGATT+GGG | - | 15084:49062-49081 | MS.gene90365:intron | 35.0% | |
| TCATTAGTAATCTGAAGAGC+TGG | + | 15084:47648-47667 | None:intergenic | 35.0% | |
| TGAATTTCACCACATTTAGC+GGG | + | 15084:49261-49280 | None:intergenic | 35.0% | |
| TGATTCAAATGGTTCTTTGC+GGG | - | 15084:49989-50008 | MS.gene90365:CDS | 35.0% | |
| TGCGTCTCATATTATTGAGA+AGG | - | 15084:49866-49885 | MS.gene90365:intron | 35.0% | |
| TGTTGGTATCTTTCAGAGAT+TGG | - | 15084:49061-49080 | MS.gene90365:intron | 35.0% | |
| TTAGATGAAGCAGTTAGAAG+TGG | - | 15084:50473-50492 | MS.gene90365:CDS | 35.0% | |
| TTGCAGATTCAACAACAACT+TGG | - | 15084:49116-49135 | MS.gene90365:intron | 35.0% | |
| ! | AACTGCTTCATCTAAAGCTA+AGG | + | 15084:50468-50487 | None:intergenic | 35.0% |
| ! | ACTGCTTCATCTAAAGCTAA+GGG | + | 15084:50467-50486 | None:intergenic | 35.0% |
| ! | ATTCGATATCACCTTTTCTG+AGG | + | 15084:50408-50427 | None:intergenic | 35.0% |
| ! | CACCTACAGGATTTTTATTG+GGG | - | 15084:48016-48035 | MS.gene90365:intron | 35.0% |
| ! | CAGGTCAGTTTTTACTCTTA+CGG | - | 15084:47231-47250 | MS.gene90365:CDS | 35.0% |
| ! | GTCACCTACAGGATTTTTAT+TGG | - | 15084:48014-48033 | MS.gene90365:intron | 35.0% |
| ! | TCTCTGAAAGATACCAACAA+AGG | + | 15084:49060-49079 | None:intergenic | 35.0% |
| ! | TGATTGGTTACTTCTACATC+AGG | - | 15084:50145-50164 | MS.gene90365:intron | 35.0% |
| ! | TGTTCATGTTATTTGGGTTC+GGG | - | 15084:47500-47519 | MS.gene90365:CDS | 35.0% |
| ! | TTCAACACTGATTAATCCGT+TGG | - | 15084:48950-48969 | MS.gene90365:intron | 35.0% |
| ! | TTCATCTAAAGCTAAGGGAA+TGG | + | 15084:50462-50481 | None:intergenic | 35.0% |
| ! | TTCGATATCACCTTTTCTGA+GGG | + | 15084:50407-50426 | None:intergenic | 35.0% |
| ! | TTTTAATAGATGAGTGGCGT+GGG | + | 15084:48917-48936 | None:intergenic | 35.0% |
| !! | CTTTGGTGTTTGTTGTGTAT+CGG | - | 15084:47890-47909 | MS.gene90365:intron | 35.0% |
| !! | GAGTTAACTTGGGAATTTTG+TGG | - | 15084:50315-50334 | MS.gene90365:intron | 35.0% |
| !! | GTATCACTTTTCTGATTGGT+AGG | - | 15084:50248-50267 | MS.gene90365:intron | 35.0% |
| !! | TCCATGGTGTTATGATCTTA+CGG | - | 15084:49151-49170 | MS.gene90365:intron | 35.0% |
| !!! | CCGGTTGTATTTATTTTTGC+CGG | - | 15084:48060-48079 | MS.gene90365:intron | 35.0% |
| !!! | TGGGTTTTGGAGATTTTGAA+GGG | + | 15084:47213-47232 | None:intergenic | 35.0% |
| !!! | TGTTTGTGGCTTTTTAGCTA+TGG | + | 15084:48713-48732 | None:intergenic | 35.0% |
| !!! | TTTGTGTTTGGTTTTGAGTG+GGG | + | 15084:48885-48904 | None:intergenic | 35.0% |
| AACCATCACCGTAATCCAAA+AGG | + | 15084:47929-47948 | None:intergenic | 40.0% | |
| AATCCTGTAGGTGACAAAAG+CGG | + | 15084:48009-48028 | None:intergenic | 40.0% | |
| ACATTATGAACCCATACCTG+TGG | + | 15084:48496-48515 | None:intergenic | 40.0% | |
| ACCAATCTGAACTGCTCAAA+AGG | + | 15084:47968-47987 | None:intergenic | 40.0% | |
| AGACAGACAATTCCATTAGC+GGG | + | 15084:47354-47373 | None:intergenic | 40.0% | |
| ATTAATGTGCACATCGACAC+CGG | - | 15084:48450-48469 | MS.gene90365:CDS | 40.0% | |
| CAGCTGCATCAATAATCCTT+TGG | + | 15084:50367-50386 | None:intergenic | 40.0% | |
| CATTTGAATGCACGAATACG+AGG | + | 15084:50033-50052 | None:intergenic | 40.0% | |
| CGACAAATAGCAAGCAAAGA+AGG | + | 15084:48327-48346 | None:intergenic | 40.0% | |
| CGATACACAACAAACACCAA+AGG | + | 15084:47892-47911 | None:intergenic | 40.0% | |
| CGTAAGAGTAAAAACTGACC+TGG | + | 15084:47233-47252 | None:intergenic | 40.0% | |
| CTACCAATGCTCTCCATAAA+TGG | + | 15084:48226-48245 | None:intergenic | 40.0% | |
| CTCCCCAATAAAAATCCTGT+AGG | + | 15084:48021-48040 | None:intergenic | 40.0% | |
| CTTCAAAATCTCCAAAACCC+AGG | - | 15084:47212-47231 | MS.gene90365:CDS | 40.0% | |
| GAAGCCATGACAGAAATTGT+TGG | + | 15084:47324-47343 | None:intergenic | 40.0% | |
| GATTCAAATGGTTCTTTGCG+GGG | - | 15084:49990-50009 | MS.gene90365:CDS | 40.0% | |
| GCAAAACTGATACAGCAGAA+CGG | - | 15084:48643-48662 | MS.gene90365:intron | 40.0% | |
| GTTTCTGTGTTCTGTTCTGT+TGG | + | 15084:48833-48852 | None:intergenic | 40.0% | |
| TGGTATTATCATTGCACTGC+AGG | - | 15084:49774-49793 | MS.gene90365:intron | 40.0% | |
| TGTTAAACTGTCTGGATGCA+GGG | - | 15084:49285-49304 | MS.gene90365:intron | 40.0% | |
| TTTAATAGATGAGTGGCGTG+GGG | + | 15084:48916-48935 | None:intergenic | 40.0% | |
| ! | AAGAAGCACAACAAACTAGC+CGG | + | 15084:48082-48101 | None:intergenic | 40.0% |
| ! | AGAGGGACCTGTATTCTTTT+TGG | - | 15084:49374-49393 | MS.gene90365:intron | 40.0% |
| ! | AGGGTGTTAAAGCAAACCAA+CGG | + | 15084:48969-48988 | None:intergenic | 40.0% |
| ! | ATCCTTTTGGATTACGGTGA+TGG | - | 15084:47924-47943 | MS.gene90365:intron | 40.0% |
| ! | ATGTTGATTGGACAGACAGA+GGG | - | 15084:49357-49376 | MS.gene90365:intron | 40.0% |
| ! | CTTCCATTTATGGAGAGCAT+TGG | - | 15084:48220-48239 | MS.gene90365:intron | 40.0% |
| ! | GCATGGACTATGCCTTAATA+AGG | - | 15084:48102-48121 | MS.gene90365:intron | 40.0% |
| ! | GTAAAAACTGACCTGGGTTT+TGG | + | 15084:47226-47245 | None:intergenic | 40.0% |
| ! | GTCACATTAGGGGTATGAAT+TGG | - | 15084:49216-49235 | MS.gene90365:CDS | 40.0% |
| ! | TATGTTGATTGGACAGACAG+AGG | - | 15084:49356-49375 | MS.gene90365:intron | 40.0% |
| ! | TCGATATCACCTTTTCTGAG+GGG | + | 15084:50406-50425 | None:intergenic | 40.0% |
| ! | TTTGATTCAAGGGTGCAAGT+TGG | - | 15084:47602-47621 | MS.gene90365:CDS | 40.0% |
| ! | TTTGGATTACGGTGATGGTT+AGG | - | 15084:47929-47948 | MS.gene90365:intron | 40.0% |
| !! | AGTTTGTTGTGCTTCTTGCA+TGG | - | 15084:48085-48104 | MS.gene90365:intron | 40.0% |
| !! | ATAGTGATGGTAGTGGTGTA+AGG | - | 15084:49839-49858 | MS.gene90365:intron | 40.0% |
| !! | CTTTGCTTGCTATTTGTCGT+TGG | - | 15084:48328-48347 | MS.gene90365:CDS | 40.0% |
| !! | GGAAAGCTTACTCTGAAGTT+AGG | + | 15084:47109-47128 | None:intergenic | 40.0% |
| !! | GGTTTTGATGTGCATAGTGA+TGG | - | 15084:49826-49845 | MS.gene90365:intron | 40.0% |
| !! | GTTTTAATAGATGAGTGGCG+TGG | + | 15084:48918-48937 | None:intergenic | 40.0% |
| !! | TGCTTGTAGTGGATTTGTGT+CGG | - | 15084:49175-49194 | MS.gene90365:CDS | 40.0% |
| !! | TGTTCTTTCCGGTTAGTCTT+TGG | - | 15084:47737-47756 | MS.gene90365:intron | 40.0% |
| !!! | ATTCTTTTTGGTGATGCTGC+TGG | - | 15084:49386-49405 | MS.gene90365:intron | 40.0% |
| !!! | CTGGGTTTTGGAGATTTTGA+AGG | + | 15084:47214-47233 | None:intergenic | 40.0% |
| !!! | GAGTATTCTGTTTTGGCCTT+TGG | - | 15084:47873-47892 | MS.gene90365:intron | 40.0% |
| !!! | GGGTTTTGGAGATTTTGAAG+GGG | + | 15084:47212-47231 | None:intergenic | 40.0% |
| !!! | GGTTTTGGAGATTTTGAAGG+GGG | + | 15084:47211-47230 | None:intergenic | 40.0% |
| !!! | GTTTTGGAGATTTTGAAGGG+GGG | + | 15084:47210-47229 | None:intergenic | 40.0% |
| !!! | TTTTGCTCTGGAACTATCGA+AGG | - | 15084:47169-47188 | MS.gene90365:CDS | 40.0% |
| AATGGATATATGCTCGCACC+GGG | - | 15084:47700-47719 | MS.gene90365:intron | 45.0% | |
| AGAGAGCTTGACAACCATAG+CGG | - | 15084:48366-48385 | MS.gene90365:intron | 45.0% | |
| AGCTAAGAAAGCTCTCGAGA+TGG | - | 15084:48396-48415 | MS.gene90365:intron | 45.0% | |
| ATCAGCGGCATGTCACATTA+GGG | - | 15084:49205-49224 | MS.gene90365:CDS | 45.0% | |
| CACGAATACGAGGACTTCTT+GGG | + | 15084:50023-50042 | None:intergenic | 45.0% | |
| CGCTTTCACGGTATGTTGAT+TGG | - | 15084:49345-49364 | MS.gene90365:intron | 45.0% | |
| CTGTAAAGACGAGCCGTTAA+AGG | - | 15084:48670-48689 | MS.gene90365:intron | 45.0% | |
| CTGTTAAACTGTCTGGATGC+AGG | - | 15084:49284-49303 | MS.gene90365:intron | 45.0% | |
| GAATGGATATATGCTCGCAC+CGG | - | 15084:47699-47718 | MS.gene90365:intron | 45.0% | |
| GACAGACAATTCCATTAGCG+GGG | + | 15084:47353-47372 | None:intergenic | 45.0% | |
| GATCGAATCTGCCCTTGAAA+AGG | - | 15084:50100-50119 | MS.gene90365:intron | 45.0% | |
| GATGTGCATAGTGATGGTAG+TGG | - | 15084:49832-49851 | MS.gene90365:intron | 45.0% | |
| GCCGTAAGATCATAACACCA+TGG | + | 15084:49155-49174 | None:intergenic | 45.0% | |
| GCGCTACCAAAAAGATCATC+CGG | + | 15084:48472-48491 | None:intergenic | 45.0% | |
| GCTAGAAATCCCCTCAGAAA+AGG | - | 15084:50394-50413 | MS.gene90365:intron | 45.0% | |
| GCTTGCGATATTGAGGAAGA+TGG | - | 15084:49796-49815 | MS.gene90365:intron | 45.0% | |
| GGTGCCAACAATTTCTGTCA+TGG | - | 15084:47317-47336 | MS.gene90365:intron | 45.0% | |
| GTTAAACTGTCTGGATGCAG+GGG | - | 15084:49286-49305 | MS.gene90365:intron | 45.0% | |
| TATCAGCGGCATGTCACATT+AGG | - | 15084:49204-49223 | MS.gene90365:CDS | 45.0% | |
| TCACGTAGGCATTTGAATGC+TGG | - | 15084:49936-49955 | MS.gene90365:CDS | 45.0% | |
| TGAAGCAGTTAGAAGTGGCA+TGG | - | 15084:50478-50497 | MS.gene90365:CDS | 45.0% | |
| TGTGTCGGGTTTACTATCAG+CGG | - | 15084:49190-49209 | MS.gene90365:CDS | 45.0% | |
| TTAAACTGTCTGGATGCAGG+GGG | - | 15084:49287-49306 | MS.gene90365:intron | 45.0% | |
| TTATTGATGCAGCTGCGACT+CGG | - | 15084:50372-50391 | MS.gene90365:intron | 45.0% | |
| TTCTCAATGCCCGCTAAATG+TGG | - | 15084:49249-49268 | MS.gene90365:CDS | 45.0% | |
| TTGGCTGCACAAAGAATCCA+TGG | - | 15084:49135-49154 | MS.gene90365:intron | 45.0% | |
| TTTGCTTCTCTGCTCGTCTT+GGG | + | 15084:48628-48647 | None:intergenic | 45.0% | |
| TTTGTCGTTGGTGTGCTTAC+AGG | - | 15084:48340-48359 | MS.gene90365:intron | 45.0% | |
| ! | AGGAAGACCAGCCTTTTCAA+GGG | + | 15084:50114-50133 | None:intergenic | 45.0% |
| ! | GCCTTTTGAGCAGTTCAGAT+TGG | - | 15084:47964-47983 | MS.gene90365:intron | 45.0% |
| ! | GGCAGCATCCTTTTGGATTA+CGG | - | 15084:47918-47937 | MS.gene90365:intron | 45.0% |
| ! | TCGACACCGGATGATCTTTT+TGG | - | 15084:48463-48482 | MS.gene90365:CDS | 45.0% |
| ! | TTTTGCTTCTCTGCTCGTCT+TGG | + | 15084:48629-48648 | None:intergenic | 45.0% |
| !! | ATTCAAGGGTGCAAGTTGGT+TGG | - | 15084:47606-47625 | MS.gene90365:CDS | 45.0% |
| !! | CTATGGTTTTGCTGCTGTTC+TGG | + | 15084:48696-48715 | None:intergenic | 45.0% |
| !! | CTTTGGTGCTGGTCTTACTT+GGG | - | 15084:50532-50551 | MS.gene90365:CDS | 45.0% |
| !! | GCTTGTAGTGGATTTGTGTC+GGG | - | 15084:49176-49195 | MS.gene90365:CDS | 45.0% |
| !! | GTTTGTTGTGTATCGGTCCT+GGG | - | 15084:47897-47916 | MS.gene90365:intron | 45.0% |
| !! | TGTTTGTTGTGTATCGGTCC+TGG | - | 15084:47896-47915 | MS.gene90365:intron | 45.0% |
| !! | TTTGGTGCTGGTCTTACTTG+GGG | - | 15084:50533-50552 | MS.gene90365:CDS | 45.0% |
| !!! | GTGTTTGTTTTGTGCAGGCT+GGG | + | 15084:48801-48820 | None:intergenic | 45.0% |
| !!! | TGTGTTTGTTTTGTGCAGGC+TGG | + | 15084:48802-48821 | None:intergenic | 45.0% |
| AAGCGGCTGCTAGACACTAA+AGG | + | 15084:47992-48011 | None:intergenic | 50.0% | |
| AATCCAAAAGGATGCTGCCC+AGG | + | 15084:47917-47936 | None:intergenic | 50.0% | |
| ACTGCAGGCTTGCGATATTG+AGG | - | 15084:49789-49808 | MS.gene90365:intron | 50.0% | |
| AGAAGTGGCATGGTTAAGCC+AGG | - | 15084:50488-50507 | MS.gene90365:CDS | 50.0% | |
| AGAGCTTGACAACCATAGCG+GGG | - | 15084:48368-48387 | MS.gene90365:intron | 50.0% | |
| AGCACTTGCTCTCTTCACGT+AGG | - | 15084:49922-49941 | MS.gene90365:CDS | 50.0% | |
| ATTGTTGGCACCTGAGACCT+CGG | + | 15084:47309-47328 | None:intergenic | 50.0% | |
| CGATGAGTGGTAGAGAGAGA+AGG | + | 15084:47130-47149 | None:intergenic | 50.0% | |
| GAATACGAGGACTTCTTGGG+AGG | + | 15084:50020-50039 | None:intergenic | 50.0% | |
| GAATCTGCCCTTGAAAAGGC+TGG | - | 15084:50104-50123 | MS.gene90365:intron | 50.0% | |
| GAGAGCTTGACAACCATAGC+GGG | - | 15084:48367-48386 | MS.gene90365:intron | 50.0% | |
| GATCTTACGGCTGCTTGTAG+TGG | - | 15084:49164-49183 | MS.gene90365:CDS | 50.0% | |
| GCACGAATACGAGGACTTCT+TGG | + | 15084:50024-50043 | None:intergenic | 50.0% | |
| GCGCATCAGCTCCAATAACT+AGG | + | 15084:49328-49347 | None:intergenic | 50.0% | |
| GCTTCAATTAGCCCCGCTAA+TGG | - | 15084:47339-47358 | MS.gene90365:intron | 50.0% | |
| GGACAAACTATTGCAGCTGC+TGG | - | 15084:50509-50528 | MS.gene90365:CDS | 50.0% | |
| GGGTTCGGCAATTGTTCGTT+GGG | - | 15084:50553-50572 | MS.gene90365:CDS | 50.0% | |
| GGTTCGGCAATTGTTCGTTG+GGG | - | 15084:50554-50573 | MS.gene90365:CDS | 50.0% | |
| GTGTGTGTTGTGCCTGTTTG+TGG | + | 15084:48727-48746 | None:intergenic | 50.0% | |
| TCAGCGGCATGTCACATTAG+GGG | - | 15084:49206-49225 | MS.gene90365:CDS | 50.0% | |
| TGGGGAGTTCCGCCTATATA+CGG | - | 15084:48034-48053 | MS.gene90365:intron | 50.0% | |
| TTGGAGCTGATGCGCTTTCA+CGG | - | 15084:49333-49352 | MS.gene90365:intron | 50.0% | |
| ! | CAGGAAGACCAGCCTTTTCA+AGG | + | 15084:50115-50134 | None:intergenic | 50.0% |
| ! | GCAGCTGCAATAGTTTGTCC+TGG | + | 15084:50509-50528 | None:intergenic | 50.0% |
| ! | GCTGCTGTTCTGGCCTTTAA+CGG | + | 15084:48686-48705 | None:intergenic | 50.0% |
| ! | GGGGCTTGCGTTTTTGTGTT+TGG | + | 15084:48897-48916 | None:intergenic | 50.0% |
| !! | ACTATTGCAGCTGCTGGCTT+TGG | - | 15084:50515-50534 | MS.gene90365:CDS | 50.0% |
| !! | AGATTTTGAAGGGGGGAGAG+TGG | + | 15084:47203-47222 | None:intergenic | 50.0% |
| !! | GCTTTGGTGCTGGTCTTACT+TGG | - | 15084:50531-50550 | MS.gene90365:CDS | 50.0% |
| !! | TGCTGGTCTTACTTGGGGTT+CGG | - | 15084:50538-50557 | MS.gene90365:CDS | 50.0% |
| !! | TGCTGGTGCTGTAGTAGTAC+AGG | - | 15084:49403-49422 | MS.gene90365:intron | 50.0% |
| !!! | TCTTTTTGGTAGCGCTCCAC+AGG | - | 15084:48477-48496 | MS.gene90365:CDS | 50.0% |
| !!! | TGTTTGGTTTTGAGTGGGGC+TGG | + | 15084:48881-48900 | None:intergenic | 50.0% |
| AGGGCAGATTCGATCGTCTG+TGG | + | 15084:50095-50114 | None:intergenic | 55.0% | |
| GAGCTTGACAACCATAGCGG+GGG | - | 15084:48369-48388 | MS.gene90365:intron | 55.0% | |
| GGGGTTCGGCAATTGTTCGT+TGG | - | 15084:50552-50571 | MS.gene90365:CDS | 55.0% | |
| ! | TACAACCGGGCGCCGTATAT+AGG | + | 15084:48049-48068 | None:intergenic | 55.0% |
| ! | TGGTAGCGCTCCACAGGTAT+GGG | - | 15084:48483-48502 | MS.gene90365:CDS | 55.0% |
| !! | ACACAAATGGGTTGGGACCG+AGG | - | 15084:47289-47308 | MS.gene90365:intron | 55.0% |
| !! | GGGTGCAAGTTGGTTGGATG+TGG | - | 15084:47612-47631 | MS.gene90365:CDS | 55.0% |
| !! | TTGGTAGCGCTCCACAGGTA+TGG | - | 15084:48482-48501 | MS.gene90365:CDS | 55.0% |
| !!! | CAGCCGCTTTTGTCACCTAC+AGG | - | 15084:48003-48022 | MS.gene90365:intron | 55.0% |
| AACACGCCGCTTGCGAATCC+CGG | + | 15084:47721-47740 | None:intergenic | 60.0% | |
| AACTGTCTGGATGCAGGGGG+TGG | - | 15084:49290-49309 | MS.gene90365:intron | 60.0% | |
| ACATAGCCTAGCAGCCTGCC+AGG | - | 15084:48851-48870 | MS.gene90365:intron | 60.0% | |
| CGCAAGCGGCGTGTTCTTTC+CGG | - | 15084:47726-47745 | MS.gene90365:intron | 60.0% | |
| CTGGGTTCGTGTGGACAGTG+GGG | + | 15084:48783-48802 | None:intergenic | 60.0% | |
| GCTGGGTTCGTGTGGACAGT+GGG | + | 15084:48784-48803 | None:intergenic | 60.0% | |
| TGGGTTCGTGTGGACAGTGG+GGG | + | 15084:48782-48801 | None:intergenic | 60.0% | |
| TTCCGCCTATATACGGCGCC+CGG | - | 15084:48041-48060 | MS.gene90365:intron | 60.0% | |
| TTGTGCAGGCTGGGTTCGTG+TGG | + | 15084:48792-48811 | None:intergenic | 60.0% | |
| ! | AACCGGGCGCCGTATATAGG+CGG | + | 15084:48046-48065 | None:intergenic | 60.0% |
| ! | CTTGACAACCATAGCGGGGG+AGG | - | 15084:48372-48391 | MS.gene90365:intron | 60.0% |
| ! | GGTCCTGGGCAGCATCCTTT+TGG | - | 15084:47911-47930 | MS.gene90365:intron | 60.0% |
| CTCGCACCGGGATTCGCAAG+CGG | - | 15084:47712-47731 | MS.gene90365:intron | 65.0% | |
| CTTAGCTGCCTCCCCCGCTA+TGG | + | 15084:48383-48402 | None:intergenic | 65.0% | |
| GGCTGGGTTCGTGTGGACAG+TGG | + | 15084:48785-48804 | None:intergenic | 65.0% | |
| TCGTGTGGACAGTGGGGGTG+TGG | + | 15084:48777-48796 | None:intergenic | 65.0% | |
| ! | CGTGTGGACAGTGGGGGTGT+GGG | + | 15084:48776-48795 | None:intergenic | 65.0% |
| ! | TGGGTTGGGACCGAGGTCTC+AGG | - | 15084:47296-47315 | MS.gene90365:intron | 65.0% |
| !! | GCAGCTGCTGGCTTTGGTGC+TGG | - | 15084:50521-50540 | MS.gene90365:CDS | 65.0% |
| !! | TTGAGTGGGGCTGGTTCGCC+TGG | + | 15084:48872-48891 | None:intergenic | 65.0% |
| GGTTCGCCTGGCAGGCTGCT+AGG | + | 15084:48860-48879 | None:intergenic | 70.0% | |
| !! | GTGGGGCTGGTTCGCCTGGC+AGG | + | 15084:48868-48887 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15084 | gene | 47076 | 50580 | 47076 | ID=MS.gene90365 |
| 15084 | mRNA | 47076 | 50580 | 47076 | ID=MS.gene90365.t1;Parent=MS.gene90365 |
| 15084 | exon | 50423 | 50580 | 50423 | ID=MS.gene90365.t1.exon1;Parent=MS.gene90365.t1 |
| 15084 | CDS | 50423 | 50580 | 50423 | ID=cds.MS.gene90365.t1;Parent=MS.gene90365.t1 |
| 15084 | exon | 49909 | 50057 | 49909 | ID=MS.gene90365.t1.exon2;Parent=MS.gene90365.t1 |
| 15084 | CDS | 49909 | 50057 | 49909 | ID=cds.MS.gene90365.t1;Parent=MS.gene90365.t1 |
| 15084 | exon | 49158 | 49294 | 49158 | ID=MS.gene90365.t1.exon3;Parent=MS.gene90365.t1 |
| 15084 | CDS | 49158 | 49294 | 49158 | ID=cds.MS.gene90365.t1;Parent=MS.gene90365.t1 |
| 15084 | exon | 48429 | 48534 | 48429 | ID=MS.gene90365.t1.exon4;Parent=MS.gene90365.t1 |
| 15084 | CDS | 48429 | 48534 | 48429 | ID=cds.MS.gene90365.t1;Parent=MS.gene90365.t1 |
| 15084 | exon | 48232 | 48350 | 48232 | ID=MS.gene90365.t1.exon5;Parent=MS.gene90365.t1 |
| 15084 | CDS | 48232 | 48350 | 48232 | ID=cds.MS.gene90365.t1;Parent=MS.gene90365.t1 |
| 15084 | exon | 47796 | 47860 | 47796 | ID=MS.gene90365.t1.exon6;Parent=MS.gene90365.t1 |
| 15084 | CDS | 47796 | 47860 | 47796 | ID=cds.MS.gene90365.t1;Parent=MS.gene90365.t1 |
| 15084 | exon | 47490 | 47712 | 47490 | ID=MS.gene90365.t1.exon7;Parent=MS.gene90365.t1 |
| 15084 | CDS | 47490 | 47712 | 47490 | ID=cds.MS.gene90365.t1;Parent=MS.gene90365.t1 |
| 15084 | exon | 47076 | 47297 | 47076 | ID=MS.gene90365.t1.exon8;Parent=MS.gene90365.t1 |
| 15084 | CDS | 47076 | 47297 | 47076 | ID=cds.MS.gene90365.t1;Parent=MS.gene90365.t1 |
| Gene Sequence |
| Protein sequence |
