AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05984


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05984.t1 MTR_8g102480 90.689 537 32 2 1 536 53 572 0.0 945
MS.gene05984.t1 MTR_8g046830 96.875 64 2 0 473 536 32 95 4.64e-34 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05984.t1 AT2G19870 65.672 402 113 5 133 523 200 587 8.71e-178 514

Find 139 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTTCTTCATCATTTAAT+TGG 0.212312 4.3:-2970946 MS.gene05984:CDS
GGTGACTGATCCTCAGAATT+TGG 0.221183 4.3:-2971430 MS.gene05984:CDS
TTCATCATTTAATTGGTAAA+AGG 0.248065 4.3:-2970939 MS.gene05984:CDS
TCCACCGACTATTCTTGTTT+TGG 0.250256 4.3:-2971169 MS.gene05984:CDS
ATTCAATGAAATCGCTTTAG+AGG 0.276688 4.3:+2971206 None:intergenic
ATATGGGGTTGGTCCGGTTT+TGG 0.283851 4.3:-2971754 MS.gene05984:CDS
CTATCCCATCTTCGAAATTC+CGG 0.303948 4.3:+2971852 None:intergenic
AACTATCGCGGTAGTAGATA+TGG 0.304627 4.3:-2972167 MS.gene05984:CDS
ATGGGATAGGAATGAGAATT+GGG 0.304875 4.3:-2971838 MS.gene05984:CDS
GTGACTGATCCTCAGAATTT+GGG 0.308960 4.3:-2971429 MS.gene05984:CDS
TGAAGTTAAGGAAGATAAAA+TGG 0.309296 4.3:-2972411 MS.gene05984:CDS
GGGCACTGGTTTGAGGCCTT+TGG 0.313891 4.3:-2971139 MS.gene05984:CDS
ATTGTTGGTGAAGGAATATA+TGG 0.317938 4.3:-2971771 MS.gene05984:CDS
TTAGTGTCTTCAGCCGAAAA+TGG 0.342593 4.3:-2971255 MS.gene05984:CDS
GGGTTCTCTTTGGGTAGCTT+TGG 0.344118 4.3:-2971457 MS.gene05984:CDS
ACTCAGTTGGTTAAAATTGC+TGG 0.346577 4.3:-2971102 MS.gene05984:CDS
ATCAAAGCATGATTTGAATA+TGG 0.349024 4.3:-2971580 MS.gene05984:CDS
CAAAAGGTGGTGTTTCTGAT+AGG 0.351351 4.3:-2972232 MS.gene05984:CDS
AGGAAGGAAAGGGTTCTCTT+TGG 0.354350 4.3:-2971467 MS.gene05984:CDS
GAAAATGGTTGGCGAGTTCT+TGG 0.366846 4.3:-2971240 MS.gene05984:CDS
GAAGGGGTGGTTGGAGGCAG+AGG 0.368357 4.3:-2971888 MS.gene05984:CDS
CTTGGGAACAATCAGTTGAT+AGG 0.368906 4.3:-2972313 MS.gene05984:CDS
AACACGCGCTTTGACAAATA+TGG 0.370111 4.3:-2972065 MS.gene05984:CDS
ATTCCTTCACCAACAATCTT+AGG 0.371901 4.3:+2971777 None:intergenic
TGGATTTAAGTAGCAACAAT+AGG 0.376931 4.3:-2971677 MS.gene05984:CDS
AATGGTGAAAATACATGAAT+TGG 0.386914 4.3:-2971505 MS.gene05984:CDS
AGATGCTTCACCACTTGAAA+TGG 0.390011 4.3:-2971523 MS.gene05984:CDS
CACTGGTTTGAGGCCTTTGG+TGG 0.390317 4.3:-2971136 MS.gene05984:CDS
GATGGGATAGGAATGAGAAT+TGG 0.394591 4.3:-2971839 MS.gene05984:CDS
TTTCCTTCCTCAATAGAAAC+AGG 0.398608 4.3:+2971480 None:intergenic
GTTAGAAACAAATGAAGTTA+AGG 0.403040 4.3:-2972423 MS.gene05984:CDS
GGAAGGAAAGGGTTCTCTTT+GGG 0.408128 4.3:-2971466 MS.gene05984:CDS
AAGGTCTGTAGATTCTTTGC+CGG 0.408230 4.3:-2970920 MS.gene05984:CDS
TGCAGGCTCACTTGAATTGA+TGG 0.409606 4.3:-2971310 MS.gene05984:CDS
GGTTGGAGGCAGAGGTGGAT+TGG 0.419961 4.3:-2971880 MS.gene05984:CDS
TGAAATAGAGGATGAGGTAG+AGG 0.420378 4.3:-2971955 MS.gene05984:CDS
AACAGGTTTGAAGGGGTGGT+TGG 0.425007 4.3:-2971897 MS.gene05984:CDS
TAACCGACCTCATCAAGGTT+TGG 0.432198 4.3:-2971550 MS.gene05984:CDS
TTCTTTATGTTATCCCACCT+TGG 0.433598 4.3:+2971918 None:intergenic
ACCTTGATGAGGTCGGTTAT+CGG 0.435923 4.3:+2971554 None:intergenic
AAGAGTTGATGATGAAATAG+AGG 0.441508 4.3:-2971967 MS.gene05984:CDS
ATGGGAAGTTTGATGATAAG+AGG 0.445575 4.3:-2972148 MS.gene05984:CDS
AAATGGTTGAGAAAGCAAAA+AGG 0.446800 4.3:-2972394 MS.gene05984:CDS
AACATAAAGAACAGGTTTGA+AGG 0.449000 4.3:-2971906 MS.gene05984:CDS
AAGAATGGTTTGGTTGAGAA+TGG 0.449455 4.3:-2972203 MS.gene05984:CDS
TCAAGAGGATTCAGCTAAGA+AGG 0.452042 4.3:-2972351 MS.gene05984:CDS
TCTGATAGGGAAAGGAAGAA+TGG 0.456281 4.3:-2972218 MS.gene05984:CDS
GCAGTGAGGGCACTGGTTTG+AGG 0.457860 4.3:-2971146 MS.gene05984:CDS
TGATGATGAAATAGAGGATG+AGG 0.459116 4.3:-2971961 MS.gene05984:CDS
TAGGGAAAGGAAGAATGGTT+TGG 0.459411 4.3:-2972213 MS.gene05984:CDS
AGGGGAGTGTTAAGTCCTCT+TGG 0.461457 4.3:-2972331 MS.gene05984:CDS
GGGGTGGTTGGAGGCAGAGG+TGG 0.463273 4.3:-2971885 MS.gene05984:CDS
AGGAAGAAGAAGGATAAGAA+AGG 0.464408 4.3:-2971657 MS.gene05984:CDS
AATAGAGGATGAGGTAGAGG+AGG 0.466450 4.3:-2971952 MS.gene05984:CDS
TTAAATGTTAGTGTAGCAAC+AGG 0.467333 4.3:-2970970 MS.gene05984:CDS
GCTGATAATGCAGCCAAAAC+CGG 0.467466 4.3:+2971741 None:intergenic
ATGGGAAATTTGATGATAAG+AGG 0.470031 4.3:-2972097 MS.gene05984:CDS
AACGCACTCTTTGACAGGTA+TGG 0.470608 4.3:-2972116 MS.gene05984:CDS
GGCTTAAATTCTGAAACTGT+TGG 0.480882 4.3:+2972281 None:intergenic
TTCACCTTCTAATTCATCAC+TGG 0.486683 4.3:+2971056 None:intergenic
AGGAATATATGGGGTTGGTC+CGG 0.486780 4.3:-2971760 MS.gene05984:CDS
GGAAGAAGAAGGATAAGAAA+GGG 0.487682 4.3:-2971656 MS.gene05984:CDS
AGGTTTGAAGGGGTGGTTGG+AGG 0.490484 4.3:-2971894 MS.gene05984:CDS
CTGCATTATCAGCTGGAAGA+AGG 0.491724 4.3:-2971731 MS.gene05984:CDS
AACACACGCTCTGATAGATA+TGG 0.493170 4.3:-2972014 MS.gene05984:CDS
GTTTGAGAGGGTTCTAAAGA+TGG 0.495191 4.3:-2971634 MS.gene05984:CDS
AGTACCAGTGATGAATTAGA+AGG 0.495253 4.3:-2971060 MS.gene05984:CDS
ATTGGAACCTGTTTCTATTG+AGG 0.499018 4.3:-2971487 MS.gene05984:CDS
AGGATAAGAAAGGGTTTGAG+AGG 0.499280 4.3:-2971647 MS.gene05984:CDS
GGTGGGATAACATAAAGAAC+AGG 0.505350 4.3:-2971914 MS.gene05984:CDS
GTGCCGAAAAGCAACTTCCT+TGG 0.506599 4.3:-2972445 MS.gene05984:CDS
GTTTCTATTGAGGAAGGAAA+GGG 0.506660 4.3:-2971477 MS.gene05984:CDS
AAGGCTGATTCCCGTGATCT+CGG 0.513099 4.3:+2972260 None:intergenic
TCTACTGTGCCTAAGATTGT+TGG 0.513554 4.3:-2971786 MS.gene05984:CDS
ACTATCGCGGTAGTAGATAT+GGG 0.514868 4.3:-2972166 MS.gene05984:CDS
AGAATTTAAGCCGAGATCAC+GGG 0.516449 4.3:-2972270 MS.gene05984:CDS
CGGAATTTCGAAGATGGGAT+AGG 0.516595 4.3:-2971851 MS.gene05984:CDS
TTGCTAACAACACCACTCAA+TGG 0.517461 4.3:+2971339 None:intergenic
CAGAATTTAAGCCGAGATCA+CGG 0.517505 4.3:-2972271 MS.gene05984:CDS
GGGGAGTGTTAAGTCCTCTT+GGG 0.518971 4.3:-2972330 MS.gene05984:CDS
CTAGCAACGCACTCTTTGAC+AGG 0.519621 4.3:-2972121 MS.gene05984:CDS
CAAGAGGATTCAGCTAAGAA+GGG 0.522670 4.3:-2972350 MS.gene05984:CDS
AGGGCTCTCGCAATTTAAAC+CGG 0.524607 4.3:+2971029 None:intergenic
TGCATTATCAGCTGGAAGAA+GGG 0.526271 4.3:-2971730 MS.gene05984:CDS
TTGTTGGTGAAGGAATATAT+GGG 0.526684 4.3:-2971770 MS.gene05984:CDS
AATATGGTAAATTTGATGAC+AGG 0.528608 4.3:-2972049 MS.gene05984:CDS
GAAATCTGTCTATTCGCGTC+CGG 0.529489 4.3:+2970901 None:intergenic
AATGAAAGGAACTCTTTACC+AGG 0.531611 4.3:+2971009 None:intergenic
GAACCTGTTTCTATTGAGGA+AGG 0.531799 4.3:-2971483 MS.gene05984:CDS
ATAGAGGATGAGGTAGAGGA+GGG 0.532626 4.3:-2971951 MS.gene05984:CDS
GGTTTAAATTGCGAGAGCCC+TGG 0.537733 4.3:-2971027 MS.gene05984:CDS
ACGCACTCTTTGACAGGTAT+GGG 0.538109 4.3:-2972115 MS.gene05984:CDS
ACAAGAATAGTCGGTGGACC+AGG 0.539499 4.3:+2971174 None:intergenic
TGTTTCTATTGAGGAAGGAA+AGG 0.540500 4.3:-2971478 MS.gene05984:CDS
AAAAGGTGGTGTTTCTGATA+GGG 0.542620 4.3:-2972231 MS.gene05984:CDS
TAGCAACAATAGGAAGAAGA+AGG 0.545364 4.3:-2971667 MS.gene05984:CDS
GGATAAGAAAGGGTTTGAGA+GGG 0.548500 4.3:-2971646 MS.gene05984:CDS
ACATAAAGAACAGGTTTGAA+GGG 0.550590 4.3:-2971905 MS.gene05984:CDS
TCATTGAATGAGATTGAACC+TGG 0.551962 4.3:-2971192 MS.gene05984:CDS
AATGGTTGGCGAGTTCTTGG+TGG 0.554386 4.3:-2971237 MS.gene05984:CDS
TCTTTGGGTAGCTTTGGATG+AGG 0.554762 4.3:-2971451 MS.gene05984:CDS
AAAGAACAGGTTTGAAGGGG+TGG 0.558809 4.3:-2971901 MS.gene05984:CDS
GAATTAGAAGGTGAAAGTAC+CGG 0.562679 4.3:-2971048 MS.gene05984:CDS
TGTTAGAAGCTCTATTCAAG+AGG 0.569050 4.3:-2972366 MS.gene05984:CDS
TGTCTTCAGCCGAAAATGGT+TGG 0.569832 4.3:-2971251 MS.gene05984:CDS
AAAACCGGAATTTCGAAGAT+GGG 0.573277 4.3:-2971856 MS.gene05984:CDS
GTTGTTAGCAAAGCAAGTGC+AGG 0.576145 4.3:-2971327 MS.gene05984:CDS
ATTGTATGTGCAACAAGGGT+TGG 0.578953 4.3:-2971697 MS.gene05984:CDS
TGGGATAGGAATGAGAATTG+GGG 0.582523 4.3:-2971837 MS.gene05984:CDS
ACTTCATTTGTTTCTAACCA+AGG 0.587852 4.3:+2972428 None:intergenic
TATGCATTGTATGTGCAACA+AGG 0.588944 4.3:-2971702 MS.gene05984:CDS
ACCGATAACCGACCTCATCA+AGG 0.589227 4.3:-2971555 MS.gene05984:CDS
GGAGAGATCATGTACTCAGT+TGG 0.591924 4.3:-2971115 MS.gene05984:CDS
AGGAGGGTGTTGATGATCCA+AGG 0.596771 4.3:-2971935 MS.gene05984:CDS
GGTGAAGGAATATATGGGGT+TGG 0.605307 4.3:-2971765 MS.gene05984:CDS
TGACTGATCCTCAGAATTTG+GGG 0.608000 4.3:-2971428 MS.gene05984:CDS
GTGGTGTTTCTGATAGGGAA+AGG 0.611587 4.3:-2972226 MS.gene05984:CDS
CTGCCCAAAACAAGAATAGT+CGG 0.613868 4.3:+2971165 None:intergenic
TCACTGGTACTTAAGTCTGA+AGG 0.626035 4.3:+2971072 None:intergenic
ATGGTAAATTTGATGACAGG+AGG 0.626340 4.3:-2972046 MS.gene05984:CDS
AAGAGGATTCAGCTAAGAAG+GGG 0.627469 4.3:-2972349 MS.gene05984:CDS
AAACCAAACCTTGATGAGGT+CGG 0.629144 4.3:+2971547 None:intergenic
AAGAATTCAGCTCCATTGAG+TGG 0.632763 4.3:-2971351 MS.gene05984:CDS
CATAAAGAACAGGTTTGAAG+GGG 0.634813 4.3:-2971904 MS.gene05984:CDS
GTACATGATCTCTCCACCAA+AGG 0.638656 4.3:+2971123 None:intergenic
GGGTGTTGATGATCCAAGGT+GGG 0.646275 4.3:-2971931 MS.gene05984:CDS
ATCAACTGATTGTTCCCAAG+AGG 0.647199 4.3:+2972316 None:intergenic
GGGTAGAAAGACATGGCAAG+AGG 0.647888 4.3:-2971817 MS.gene05984:CDS
TAAAGTTGATGATAATGTTG+AGG 0.652967 4.3:-2971991 MS.gene05984:CDS
GTGCCTAAGATTGTTGGTGA+AGG 0.658684 4.3:-2971780 MS.gene05984:CDS
TGTTGGTGAAGGAATATATG+GGG 0.659943 4.3:-2971769 MS.gene05984:CDS
ATGAAAGGAACTCTTTACCA+GGG 0.662091 4.3:+2971010 None:intergenic
AGAATTGGGGTAGAAAGACA+TGG 0.667470 4.3:-2971824 MS.gene05984:CDS
TCTAAAACCAAACCTTGATG+AGG 0.673105 4.3:+2971543 None:intergenic
CCCAAAACAAGAATAGTCGG+TGG 0.677904 4.3:+2971168 None:intergenic
ATGCATTGTATGTGCAACAA+GGG 0.683300 4.3:-2971701 MS.gene05984:CDS
AGGGTGTTGATGATCCAAGG+TGG 0.702862 4.3:-2971932 MS.gene05984:CDS
GACTGATCCTCAGAATTTGG+GGG 0.715259 4.3:-2971427 MS.gene05984:CDS
AGAGAGCATAGAAACTATCG+CGG 0.742148 4.3:-2972179 MS.gene05984:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATCATTTAATTGGTAAA+AGG - chr4.3:2972437-2972456 MS.gene05984:CDS 20.0%
!!! ATTAGGTCTTCATATTTTTT+TGG - chr4.3:2971977-2971996 MS.gene05984:CDS 20.0%
! AATGGTGAAAATACATGAAT+TGG - chr4.3:2971871-2971890 MS.gene05984:CDS 25.0%
! ATCAAAGCATGATTTGAATA+TGG - chr4.3:2971796-2971815 MS.gene05984:CDS 25.0%
! GTTAGAAACAAATGAAGTTA+AGG - chr4.3:2970953-2970972 MS.gene05984:CDS 25.0%
! TGAAGTTAAGGAAGATAAAA+TGG - chr4.3:2970965-2970984 MS.gene05984:CDS 25.0%
!! AATATGGTAAATTTGATGAC+AGG - chr4.3:2971327-2971346 MS.gene05984:CDS 25.0%
!! TAAAGAGTTCCTTTCATTTT+TGG - chr4.3:2972372-2972391 MS.gene05984:CDS 25.0%
!!! TAAAGTTGATGATAATGTTG+AGG - chr4.3:2971385-2971404 MS.gene05984:CDS 25.0%
AAATGGTTGAGAAAGCAAAA+AGG - chr4.3:2970982-2971001 MS.gene05984:CDS 30.0%
AACATAAAGAACAGGTTTGA+AGG - chr4.3:2971470-2971489 MS.gene05984:CDS 30.0%
ACATAAAGAACAGGTTTGAA+GGG - chr4.3:2971471-2971490 MS.gene05984:CDS 30.0%
ATTCAATGAAATCGCTTTAG+AGG + chr4.3:2972173-2972192 None:intergenic 30.0%
GTGCTTCTTCATCATTTAAT+TGG - chr4.3:2972430-2972449 MS.gene05984:CDS 30.0%
TGGATTTAAGTAGCAACAAT+AGG - chr4.3:2971699-2971718 MS.gene05984:CDS 30.0%
TTAAATGTTAGTGTAGCAAC+AGG - chr4.3:2972406-2972425 MS.gene05984:CDS 30.0%
! ATGGGAAATTTGATGATAAG+AGG - chr4.3:2971279-2971298 MS.gene05984:CDS 30.0%
! ATTGTTGGTGAAGGAATATA+TGG - chr4.3:2971605-2971624 MS.gene05984:CDS 30.0%
! TGTATTTTCACCATTTCAAG+TGG + chr4.3:2971866-2971885 None:intergenic 30.0%
! TTGTTGGTGAAGGAATATAT+GGG - chr4.3:2971606-2971625 MS.gene05984:CDS 30.0%
!! AAGAGTTGATGATGAAATAG+AGG - chr4.3:2971409-2971428 MS.gene05984:CDS 30.0%
!! ACTTCATTTGTTTCTAACCA+AGG + chr4.3:2970951-2970970 None:intergenic 30.0%
!!! TCATATTTTTTTGGAGCTAC+TGG - chr4.3:2971986-2972005 MS.gene05984:CDS 30.0%
AAAAACCGGAATTTCGAAGA+TGG - chr4.3:2971519-2971538 MS.gene05984:CDS 35.0%
AAAACCGGAATTTCGAAGAT+GGG - chr4.3:2971520-2971539 MS.gene05984:CDS 35.0%
AATGAAAGGAACTCTTTACC+AGG + chr4.3:2972370-2972389 None:intergenic 35.0%
ACTCAGTTGGTTAAAATTGC+TGG - chr4.3:2972274-2972293 MS.gene05984:CDS 35.0%
AGAATTTGGGGGCAATTATT+AGG - chr4.3:2971960-2971979 MS.gene05984:CDS 35.0%
AGGAAGAAGAAGGATAAGAA+AGG - chr4.3:2971719-2971738 MS.gene05984:CDS 35.0%
AGTACCAGTGATGAATTAGA+AGG - chr4.3:2972316-2972335 MS.gene05984:CDS 35.0%
ATGAAAGGAACTCTTTACCA+GGG + chr4.3:2972369-2972388 None:intergenic 35.0%
ATGCATTGTATGTGCAACAA+GGG - chr4.3:2971675-2971694 MS.gene05984:CDS 35.0%
ATGGGATAGGAATGAGAATT+GGG - chr4.3:2971538-2971557 MS.gene05984:CDS 35.0%
ATTCCTTCACCAACAATCTT+AGG + chr4.3:2971602-2971621 None:intergenic 35.0%
CATAAAGAACAGGTTTGAAG+GGG - chr4.3:2971472-2971491 MS.gene05984:CDS 35.0%
GGAAGAAGAAGGATAAGAAA+GGG - chr4.3:2971720-2971739 MS.gene05984:CDS 35.0%
GTTTCTATTGAGGAAGGAAA+GGG - chr4.3:2971899-2971918 MS.gene05984:CDS 35.0%
TAGCAACAATAGGAAGAAGA+AGG - chr4.3:2971709-2971728 MS.gene05984:CDS 35.0%
TATGCATTGTATGTGCAACA+AGG - chr4.3:2971674-2971693 MS.gene05984:CDS 35.0%
TCATTGAATGAGATTGAACC+TGG - chr4.3:2972184-2972203 MS.gene05984:CDS 35.0%
TGTTAGAAGCTCTATTCAAG+AGG - chr4.3:2971010-2971029 MS.gene05984:CDS 35.0%
TTCACCTTCTAATTCATCAC+TGG + chr4.3:2972323-2972342 None:intergenic 35.0%
TTCTTTATGTTATCCCACCT+TGG + chr4.3:2971461-2971480 None:intergenic 35.0%
TTTCCACAGCCAAAAATGAA+AGG + chr4.3:2972384-2972403 None:intergenic 35.0%
TTTCCTTCCTCAATAGAAAC+AGG + chr4.3:2971899-2971918 None:intergenic 35.0%
! AAAAGGTGGTGTTTCTGATA+GGG - chr4.3:2971145-2971164 MS.gene05984:CDS 35.0%
! ATGGGAAGTTTGATGATAAG+AGG - chr4.3:2971228-2971247 MS.gene05984:CDS 35.0%
! ATGGTAAATTTGATGACAGG+AGG - chr4.3:2971330-2971349 MS.gene05984:CDS 35.0%
! GAATTAGAAGGTGAAAGTAC+CGG - chr4.3:2972328-2972347 MS.gene05984:CDS 35.0%
! TCTAAAACCAAACCTTGATG+AGG + chr4.3:2971836-2971855 None:intergenic 35.0%
! TGATGATGAAATAGAGGATG+AGG - chr4.3:2971415-2971434 MS.gene05984:CDS 35.0%
! TGTTGGTGAAGGAATATATG+GGG - chr4.3:2971607-2971626 MS.gene05984:CDS 35.0%
! TGTTTCTATTGAGGAAGGAA+AGG - chr4.3:2971898-2971917 MS.gene05984:CDS 35.0%
!! AAGAATGGTTTGGTTGAGAA+TGG - chr4.3:2971173-2971192 MS.gene05984:CDS 35.0%
!! ATTGGAACCTGTTTCTATTG+AGG - chr4.3:2971889-2971908 MS.gene05984:CDS 35.0%
!! GGCTTAAATTCTGAAACTGT+TGG + chr4.3:2971098-2971117 None:intergenic 35.0%
!!! TAACCAAGGAAGTTGCTTTT+CGG + chr4.3:2970937-2970956 None:intergenic 35.0%
AAACCAAACCTTGATGAGGT+CGG + chr4.3:2971832-2971851 None:intergenic 40.0%
AACACACGCTCTGATAGATA+TGG - chr4.3:2971362-2971381 MS.gene05984:CDS 40.0%
AACACGCGCTTTGACAAATA+TGG - chr4.3:2971311-2971330 MS.gene05984:CDS 40.0%
AACTATCGCGGTAGTAGATA+TGG - chr4.3:2971209-2971228 MS.gene05984:CDS 40.0%
AAGAATTCAGCTCCATTGAG+TGG - chr4.3:2972025-2972044 MS.gene05984:CDS 40.0%
AAGAGGATTCAGCTAAGAAG+GGG - chr4.3:2971027-2971046 MS.gene05984:CDS 40.0%
AAGGTCTGTAGATTCTTTGC+CGG - chr4.3:2972456-2972475 MS.gene05984:CDS 40.0%
ACTATCGCGGTAGTAGATAT+GGG - chr4.3:2971210-2971229 MS.gene05984:CDS 40.0%
AGAATTGGGGTAGAAAGACA+TGG - chr4.3:2971552-2971571 MS.gene05984:CDS 40.0%
AGAATTTAAGCCGAGATCAC+GGG - chr4.3:2971106-2971125 MS.gene05984:CDS 40.0%
AGATGCTTCACCACTTGAAA+TGG - chr4.3:2971853-2971872 MS.gene05984:CDS 40.0%
AGGATAAGAAAGGGTTTGAG+AGG - chr4.3:2971729-2971748 MS.gene05984:CDS 40.0%
ATAATTGCCCCCAAATTCTG+AGG + chr4.3:2971959-2971978 None:intergenic 40.0%
ATCAACTGATTGTTCCCAAG+AGG + chr4.3:2971063-2971082 None:intergenic 40.0%
ATTGTATGTGCAACAAGGGT+TGG - chr4.3:2971679-2971698 MS.gene05984:CDS 40.0%
CAAGAGGATTCAGCTAAGAA+GGG - chr4.3:2971026-2971045 MS.gene05984:CDS 40.0%
CAGAATTTAAGCCGAGATCA+CGG - chr4.3:2971105-2971124 MS.gene05984:CDS 40.0%
CTATCCCATCTTCGAAATTC+CGG + chr4.3:2971527-2971546 None:intergenic 40.0%
CTGCCCAAAACAAGAATAGT+CGG + chr4.3:2972214-2972233 None:intergenic 40.0%
CTTGGGAACAATCAGTTGAT+AGG - chr4.3:2971063-2971082 MS.gene05984:CDS 40.0%
GATGGGATAGGAATGAGAAT+TGG - chr4.3:2971537-2971556 MS.gene05984:CDS 40.0%
GGATAAGAAAGGGTTTGAGA+GGG - chr4.3:2971730-2971749 MS.gene05984:CDS 40.0%
GGTGGGATAACATAAAGAAC+AGG - chr4.3:2971462-2971481 MS.gene05984:CDS 40.0%
GTGACTGATCCTCAGAATTT+GGG - chr4.3:2971947-2971966 MS.gene05984:CDS 40.0%
TAGGGAAAGGAAGAATGGTT+TGG - chr4.3:2971163-2971182 MS.gene05984:CDS 40.0%
TCAAGAGGATTCAGCTAAGA+AGG - chr4.3:2971025-2971044 MS.gene05984:CDS 40.0%
TCACTGGTACTTAAGTCTGA+AGG + chr4.3:2972307-2972326 None:intergenic 40.0%
TCTACTGTGCCTAAGATTGT+TGG - chr4.3:2971590-2971609 MS.gene05984:CDS 40.0%
TCTGATAGGGAAAGGAAGAA+TGG - chr4.3:2971158-2971177 MS.gene05984:CDS 40.0%
TGAAATAGAGGATGAGGTAG+AGG - chr4.3:2971421-2971440 MS.gene05984:CDS 40.0%
TGACTGATCCTCAGAATTTG+GGG - chr4.3:2971948-2971967 MS.gene05984:CDS 40.0%
TGCATTATCAGCTGGAAGAA+GGG - chr4.3:2971646-2971665 MS.gene05984:CDS 40.0%
TGGGATAGGAATGAGAATTG+GGG - chr4.3:2971539-2971558 MS.gene05984:CDS 40.0%
TTAGTGTCTTCAGCCGAAAA+TGG - chr4.3:2972121-2972140 MS.gene05984:CDS 40.0%
TTGCTAACAACACCACTCAA+TGG + chr4.3:2972040-2972059 None:intergenic 40.0%
! AACACCACCTTTTGCAGAAA+AGG + chr4.3:2971138-2971157 None:intergenic 40.0%
! AAGAACTCGCCAACCATTTT+CGG + chr4.3:2972137-2972156 None:intergenic 40.0%
! AGAGAGCATAGAAACTATCG+CGG - chr4.3:2971197-2971216 MS.gene05984:CDS 40.0%
! CAAAAGGTGGTGTTTCTGAT+AGG - chr4.3:2971144-2971163 MS.gene05984:CDS 40.0%
! GAATCAGCCTTTTCTGCAAA+AGG - chr4.3:2971128-2971147 MS.gene05984:CDS 40.0%
!! GAACCTGTTTCTATTGAGGA+AGG - chr4.3:2971893-2971912 MS.gene05984:CDS 40.0%
!! GTTTGAGAGGGTTCTAAAGA+TGG - chr4.3:2971742-2971761 MS.gene05984:CDS 40.0%
!! TCCACCGACTATTCTTGTTT+TGG - chr4.3:2972207-2972226 MS.gene05984:CDS 40.0%
!!! ATTCTTGTTTTGGGCAGTGA+GGG - chr4.3:2972217-2972236 MS.gene05984:CDS 40.0%
!!! CCACCGACTATTCTTGTTTT+GGG - chr4.3:2972208-2972227 MS.gene05984:CDS 40.0%
!!! GTTCCTTTCATTTTTGGCTG+TGG - chr4.3:2972378-2972397 MS.gene05984:CDS 40.0%
!!! TATTCTTGTTTTGGGCAGTG+AGG - chr4.3:2972216-2972235 MS.gene05984:CDS 40.0%
AAAGAACAGGTTTGAAGGGG+TGG - chr4.3:2971475-2971494 MS.gene05984:CDS 45.0%
AACGCACTCTTTGACAGGTA+TGG - chr4.3:2971260-2971279 MS.gene05984:CDS 45.0%
AATAGAGGATGAGGTAGAGG+AGG - chr4.3:2971424-2971443 MS.gene05984:CDS 45.0%
ACCTTGATGAGGTCGGTTAT+CGG + chr4.3:2971825-2971844 None:intergenic 45.0%
ACGCACTCTTTGACAGGTAT+GGG - chr4.3:2971261-2971280 MS.gene05984:CDS 45.0%
AGGAAGGAAAGGGTTCTCTT+TGG - chr4.3:2971909-2971928 MS.gene05984:CDS 45.0%
AGGGCTCTCGCAATTTAAAC+CGG + chr4.3:2972350-2972369 None:intergenic 45.0%
ATAGAGGATGAGGTAGAGGA+GGG - chr4.3:2971425-2971444 MS.gene05984:CDS 45.0%
CCCAAAACAAGAATAGTCGG+TGG + chr4.3:2972211-2972230 None:intergenic 45.0%
CGGAATTTCGAAGATGGGAT+AGG - chr4.3:2971525-2971544 MS.gene05984:CDS 45.0%
CTGCATTATCAGCTGGAAGA+AGG - chr4.3:2971645-2971664 MS.gene05984:CDS 45.0%
GAAAATGGTTGGCGAGTTCT+TGG - chr4.3:2972136-2972155 MS.gene05984:CDS 45.0%
GAAATCTGTCTATTCGCGTC+CGG + chr4.3:2972478-2972497 None:intergenic 45.0%
GACTGATCCTCAGAATTTGG+GGG - chr4.3:2971949-2971968 MS.gene05984:CDS 45.0%
GGAAGGAAAGGGTTCTCTTT+GGG - chr4.3:2971910-2971929 MS.gene05984:CDS 45.0%
GGAGAGATCATGTACTCAGT+TGG - chr4.3:2972261-2972280 MS.gene05984:CDS 45.0%
GGTGAAGGAATATATGGGGT+TGG - chr4.3:2971611-2971630 MS.gene05984:CDS 45.0%
GGTGACTGATCCTCAGAATT+TGG - chr4.3:2971946-2971965 MS.gene05984:CDS 45.0%
GTACATGATCTCTCCACCAA+AGG + chr4.3:2972256-2972275 None:intergenic 45.0%
GTTGTTAGCAAAGCAAGTGC+AGG - chr4.3:2972049-2972068 MS.gene05984:CDS 45.0%
TAACCGACCTCATCAAGGTT+TGG - chr4.3:2971826-2971845 MS.gene05984:CDS 45.0%
TGCAGGCTCACTTGAATTGA+TGG - chr4.3:2972066-2972085 MS.gene05984:CDS 45.0%
TGTCTTCAGCCGAAAATGGT+TGG - chr4.3:2972125-2972144 MS.gene05984:CDS 45.0%
! GCTGATAATGCAGCCAAAAC+CGG + chr4.3:2971638-2971657 None:intergenic 45.0%
! GTGCCTAAGATTGTTGGTGA+AGG - chr4.3:2971596-2971615 MS.gene05984:CDS 45.0%
! GTGGTGTTTCTGATAGGGAA+AGG - chr4.3:2971150-2971169 MS.gene05984:CDS 45.0%
! TCAGCCTTTTCTGCAAAAGG+TGG - chr4.3:2971131-2971150 MS.gene05984:CDS 45.0%
!! AGGAATATATGGGGTTGGTC+CGG - chr4.3:2971616-2971635 MS.gene05984:CDS 45.0%
!! CAGAGGTGGATTGGAAAAAC+CGG - chr4.3:2971505-2971524 MS.gene05984:CDS 45.0%
!! TCTTTGGGTAGCTTTGGATG+AGG - chr4.3:2971925-2971944 MS.gene05984:CDS 45.0%
!! TTGCTTTTCGGCACTTCTAG+CGG + chr4.3:2970925-2970944 None:intergenic 45.0%
!!! GTTTTGGCTGCATTATCAGC+TGG - chr4.3:2971638-2971657 MS.gene05984:CDS 45.0%
AACAGGTTTGAAGGGGTGGT+TGG - chr4.3:2971479-2971498 MS.gene05984:CDS 50.0%
AATGGTTGGCGAGTTCTTGG+TGG - chr4.3:2972139-2972158 MS.gene05984:CDS 50.0%
ACAAGAATAGTCGGTGGACC+AGG + chr4.3:2972205-2972224 None:intergenic 50.0%
ACCGATAACCGACCTCATCA+AGG - chr4.3:2971821-2971840 MS.gene05984:CDS 50.0%
CTAGCAACGCACTCTTTGAC+AGG - chr4.3:2971255-2971274 MS.gene05984:CDS 50.0%
GGGTAGAAAGACATGGCAAG+AGG - chr4.3:2971559-2971578 MS.gene05984:CDS 50.0%
GGGTTCTCTTTGGGTAGCTT+TGG - chr4.3:2971919-2971938 MS.gene05984:CDS 50.0%
GGTTTAAATTGCGAGAGCCC+TGG - chr4.3:2972349-2972368 MS.gene05984:CDS 50.0%
GTGCCGAAAAGCAACTTCCT+TGG - chr4.3:2970931-2970950 MS.gene05984:CDS 50.0%
! AAGGCTGATTCCCGTGATCT+CGG + chr4.3:2971119-2971138 None:intergenic 50.0%
!! AGGAGGGTGTTGATGATCCA+AGG - chr4.3:2971441-2971460 MS.gene05984:CDS 50.0%
!! AGGGGAGTGTTAAGTCCTCT+TGG - chr4.3:2971045-2971064 MS.gene05984:CDS 50.0%
!! AGGGTGTTGATGATCCAAGG+TGG - chr4.3:2971444-2971463 MS.gene05984:CDS 50.0%
!! GGGGAGTGTTAAGTCCTCTT+GGG - chr4.3:2971046-2971065 MS.gene05984:CDS 50.0%
!! GGGTGTTGATGATCCAAGGT+GGG - chr4.3:2971445-2971464 MS.gene05984:CDS 50.0%
!!! ATATGGGGTTGGTCCGGTTT+TGG - chr4.3:2971622-2971641 MS.gene05984:CDS 50.0%
AGGTTTGAAGGGGTGGTTGG+AGG - chr4.3:2971482-2971501 MS.gene05984:CDS 55.0%
!! CACTGGTTTGAGGCCTTTGG+TGG - chr4.3:2972240-2972259 MS.gene05984:CDS 55.0%
GGTTGGAGGCAGAGGTGGAT+TGG - chr4.3:2971496-2971515 MS.gene05984:CDS 60.0%
!! GCAGTGAGGGCACTGGTTTG+AGG - chr4.3:2972230-2972249 MS.gene05984:CDS 60.0%
!! GGGCACTGGTTTGAGGCCTT+TGG - chr4.3:2972237-2972256 MS.gene05984:CDS 60.0%
!! GTTTTGGGCAGTGAGGGCAC+TGG - chr4.3:2972223-2972242 MS.gene05984:CDS 60.0%
GAAGGGGTGGTTGGAGGCAG+AGG - chr4.3:2971488-2971507 MS.gene05984:CDS 65.0%
GGGGTGGTTGGAGGCAGAGG+TGG - chr4.3:2971491-2971510 MS.gene05984:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 2970894 2972504 2970894 ID=MS.gene05984
chr4.3 mRNA 2970894 2972504 2970894 ID=MS.gene05984.t1;Parent=MS.gene05984
chr4.3 exon 2970894 2972504 2970894 ID=MS.gene05984.t1.exon1;Parent=MS.gene05984.t1
chr4.3 CDS 2970894 2972504 2970894 ID=cds.MS.gene05984.t1;Parent=MS.gene05984.t1
Gene Sequence

>MS.gene05984

ATGCTACAAATTGCTAGAAAGTACTGTGCCGCTAGAAGTGCCGAAAAGCAACTTCCTTGGTTAGAAACAAATGAAGTTAAGGAAGATAAAATGGTTGAGAAAGCAAAAAGGAACAATGTTAGAAGCTCTATTCAAGAGGATTCAGCTAAGAAGGGGAGTGTTAAGTCCTCTTGGGAACAATCAGTTGATAGGTTAGAGATACCAACAGTTTCAGAATTTAAGCCGAGATCACGGGAATCAGCCTTTTCTGCAAAAGGTGGTGTTTCTGATAGGGAAAGGAAGAATGGTTTGGTTGAGAATGGTAGAGAGCATAGAAACTATCGCGGTAGTAGATATGGGAAGTTTGATGATAAGAGGAGTGCTAGCAACGCACTCTTTGACAGGTATGGGAAATTTGATGATAAGAGGAGCACTAGCAACACGCGCTTTGACAAATATGGTAAATTTGATGACAGGAGGAGCGCTAGCAACACACGCTCTGATAGATATGGTAAAGTTGATGATAATGTTGAGGAAAGAGTTGATGATGAAATAGAGGATGAGGTAGAGGAGGGTGTTGATGATCCAAGGTGGGATAACATAAAGAACAGGTTTGAAGGGGTGGTTGGAGGCAGAGGTGGATTGGAAAAACCGGAATTTCGAAGATGGGATAGGAATGAGAATTGGGGTAGAAAGACATGGCAAGAGGCAACTGAATCTACTGTGCCTAAGATTGTTGGTGAAGGAATATATGGGGTTGGTCCGGTTTTGGCTGCATTATCAGCTGGAAGAAGGGAATTCTATGCATTGTATGTGCAACAAGGGTTGGATTTAAGTAGCAACAATAGGAAGAAGAAGGATAAGAAAGGGTTTGAGAGGGTTCTAAAGATGGCTGAAAAGCTTAATTTAAGTATAAAAGAAGAATCAAAGCATGATTTGAATATGGTAACCGATAACCGACCTCATCAAGGTTTGGTTTTAGATGCTTCACCACTTGAAATGGTGAAAATACATGAATTGGAACCTGTTTCTATTGAGGAAGGAAAGGGTTCTCTTTGGGTAGCTTTGGATGAGGTGACTGATCCTCAGAATTTGGGGGCAATTATTAGGTCTTCATATTTTTTTGGAGCTACTGGTATAGTTTTATGTGCAAAGAATTCAGCTCCATTGAGTGGTGTTGTTAGCAAAGCAAGTGCAGGCTCACTTGAATTGATGGAACTTAGATATTGCAAAAACATGATGCAATTCTTAGTGTCTTCAGCCGAAAATGGTTGGCGAGTTCTTGGTGGTTCTGTCTCCTCTAAAGCGATTTCATTGAATGAGATTGAACCTGGTCCACCGACTATTCTTGTTTTGGGCAGTGAGGGCACTGGTTTGAGGCCTTTGGTGGAGAGATCATGTACTCAGTTGGTTAAAATTGCTGGTAATATTCCTTCAGACTTAAGTACCAGTGATGAATTAGAAGGTGAAAGTACCGGTTTAAATTGCGAGAGCCCTGGTAAAGAGTTCCTTTCATTTTTGGCTGTGGAAAGCTTAAATGTTAGTGTAGCAACAGGTGTGCTTCTTCATCATTTAATTGGTAAAAGGTCTGTAGATTCTTTGCCGGACGCGAATAGACAGATTTCTGAGTGA

Protein sequence

>MS.gene05984.t1

MLQIARKYCAARSAEKQLPWLETNEVKEDKMVEKAKRNNVRSSIQEDSAKKGSVKSSWEQSVDRLEIPTVSEFKPRSRESAFSAKGGVSDRERKNGLVENGREHRNYRGSRYGKFDDKRSASNALFDRYGKFDDKRSTSNTRFDKYGKFDDRRSASNTRSDRYGKVDDNVEERVDDEIEDEVEEGVDDPRWDNIKNRFEGVVGGRGGLEKPEFRRWDRNENWGRKTWQEATESTVPKIVGEGIYGVGPVLAALSAGRREFYALYVQQGLDLSSNNRKKKDKKGFERVLKMAEKLNLSIKEESKHDLNMVTDNRPHQGLVLDASPLEMVKIHELEPVSIEEGKGSLWVALDEVTDPQNLGAIIRSSYFFGATGIVLCAKNSAPLSGVVSKASAGSLELMELRYCKNMMQFLVSSAENGWRVLGGSVSSKAISLNEIEPGPPTILVLGSEGTGLRPLVERSCTQLVKIAGNIPSDLSTSDELEGESTGLNCESPGKEFLSFLAVESLNVSVATGVLLHHLIGKRSVDSLPDANRQISE