AlfalfaGEDB | MS.gene90632

M. sativa cultivar XinJiangDaYe / MS.gene90632

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: PF14541.9 PF14543.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90632.t1	XP_013464878.1	97.2	492	13	1	1	492	1	491	3.80E-267	930.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90632.t1	Q9S9K4	39.8	415	228	9	40	449	40	437	7.0e-76	286.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90632.t1	A0A072VBY9	97.2	492	13	1	1	492	1	491	2.8e-267	930.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051279	MS.gene90632	0.805205	1.49E-49	-1.69E-46
MS.gene052037	MS.gene90632	0.806913	6.53E-50	-1.69E-46
MS.gene052118	MS.gene90632	0.814143	1.79E-51	-1.69E-46
MS.gene05686	MS.gene90632	0.821987	3.01E-53	-1.69E-46
MS.gene060522	MS.gene90632	0.800247	1.58E-48	-1.69E-46
MS.gene060785	MS.gene90632	0.837246	5.82E-57	-1.69E-46

Showing 1 to 6 of 6 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90632.t1	MTR_2g084550	97.154	492	13	1	1	492	1	491	0.0	960
MS.gene90632.t1	MTR_4g056420	75.267	469	111	2	6	470	1	468	0.0	731
MS.gene90632.t1	MTR_7g102750	61.066	488	187	3	4	489	5	491	0.0	612
MS.gene90632.t1	MTR_1g061940	60.917	458	171	5	5	458	9	462	0.0	569
MS.gene90632.t1	MTR_7g102750	63.350	412	148	3	4	413	5	415	0.0	543
MS.gene90632.t1	MTR_1g078240	40.167	478	260	9	18	489	19	476	2.49e-111	338
MS.gene90632.t1	MTR_1g078240	40.377	478	260	9	18	489	19	477	3.87e-111	338
MS.gene90632.t1	MTR_7g080230	39.462	446	249	9	8	445	5	437	5.73e-104	319
MS.gene90632.t1	MTR_7g021510	37.634	465	265	9	19	473	18	467	1.01e-99	308
MS.gene90632.t1	MTR_1g078240	41.067	375	208	5	18	391	19	381	5.18e-92	285

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90632.t1	AT5G22850	72.786	463	122	2	1	460	1	462	0.0	689
MS.gene90632.t1	AT1G08210	62.151	465	173	3	2	466	55	516	0.0	564
MS.gene90632.t1	AT2G36670	58.264	484	190	5	11	489	27	503	0.0	564
MS.gene90632.t1	AT1G08210	62.151	465	173	3	2	466	41	502	0.0	564
MS.gene90632.t1	AT1G08210	62.151	465	173	3	2	466	7	468	0.0	562
MS.gene90632.t1	AT2G36670	57.669	489	190	6	11	489	27	508	0.0	557
MS.gene90632.t1	AT1G08210	58.740	492	173	4	2	466	7	495	0.0	548
MS.gene90632.t1	AT2G36670	60.437	412	156	4	78	489	33	437	8.70e-177	504
MS.gene90632.t1	AT2G36670	60.437	412	156	4	78	489	33	437	8.70e-177	504
MS.gene90632.t1	AT3G02740	39.062	448	245	9	5	439	8	440	1.43e-105	323

Showing 1 to 10 of 87 entries

Previous1 2 3 4 5…9Next

Find 112 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCACCGCATTGACAAA+GGG	0.548435	2.1:-16925273	None:intergenic
AAATCTGACAGAGCAGTTGA+TGG	0.478478	2.1:+16924736	MS.gene90632:CDS
AACGGTTGTCCACAGACAAG+TGG	0.572605	2.1:+16924200	MS.gene90632:CDS
AATACCACAATCTGTACGTA+CGG	0.559219	2.1:+16925470	MS.gene90632:CDS
AATGTTTCTTAATTACCGAC+AGG	0.509619	2.1:+16925511	MS.gene90632:CDS
ACAACCGTACGTACAGATTG+TGG	0.610972	2.1:-16925474	None:intergenic
ACACTGGAAGTGATGTTCTC+TGG	0.404650	2.1:+16924159	MS.gene90632:CDS
ACCTGCAACCCACTTGTCTG+TGG	0.577779	2.1:-16924209	None:intergenic
ACCTTTGATCCATTCCAAGT+CGG	0.554032	2.1:+16923371	MS.gene90632:CDS
ACGGTTGTCCACAGACAAGT+GGG	0.671786	2.1:+16924201	MS.gene90632:CDS

Showing 1 to 10 of 112 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTAAACAGATAGATTGCA+AGG	-	chr2.1:16926068-16926087	None:intergenic	30.0%
AATGTTTCTTAATTACCGAC+AGG	+	chr2.1:16925511-16925530	MS.gene90632:CDS	30.0%
AGGCCTGAAATATTTGAAAA+TGG	-	chr2.1:16925109-16925128	None:intergenic	30.0%
AGTGGAGTATAAACTATGTT+AGG	-	chr2.1:16924901-16924920	None:intergenic	30.0%
ATAAAAACATCCTAACCTGT+CGG	-	chr2.1:16925529-16925548	None:intergenic	30.0%
CACTCTAAACTGATCATAAA+AGG	-	chr2.1:16923593-16923612	None:intergenic	30.0%
CGAATCATTTATTAAGGCAT+AGG	+	chr2.1:16925963-16925982	MS.gene90632:intron	30.0%
GATTAAACCAATAAACACGA+AGG	-	chr2.1:16924650-16924669	None:intergenic	30.0%
GCATTTAGTGAGAAAACATA+CGG	-	chr2.1:16926310-16926329	None:intergenic	30.0%
GGAGATTTATCAAACATTGA+TGG	+	chr2.1:16925411-16925430	MS.gene90632:intron	30.0%

Showing 1 to 10 of 235 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	16923164	16927145	16923164	ID=MS.gene90632
chr2.1	mRNA	16923164	16927145	16923164	ID=MS.gene90632.t1;Parent=MS.gene90632
chr2.1	exon	16923164	16923393	16923164	ID=MS.gene90632.t1.exon1;Parent=MS.gene90632.t1
chr2.1	CDS	16923164	16923393	16923164	ID=cds.MS.gene90632.t1;Parent=MS.gene90632.t1
chr2.1	exon	16924100	16924229	16924100	ID=MS.gene90632.t1.exon2;Parent=MS.gene90632.t1
chr2.1	CDS	16924100	16924229	16924100	ID=cds.MS.gene90632.t1;Parent=MS.gene90632.t1
chr2.1	exon	16924343	16924593	16924343	ID=MS.gene90632.t1.exon3;Parent=MS.gene90632.t1
chr2.1	CDS	16924343	16924593	16924343	ID=cds.MS.gene90632.t1;Parent=MS.gene90632.t1
chr2.1	exon	16924705	16924932	16924705	ID=MS.gene90632.t1.exon4;Parent=MS.gene90632.t1
chr2.1	CDS	16924705	16924932	16924705	ID=cds.MS.gene90632.t1;Parent=MS.gene90632.t1
chr2.1	exon	16925125	16925287	16925125	ID=MS.gene90632.t1.exon5;Parent=MS.gene90632.t1
chr2.1	CDS	16925125	16925287	16925125	ID=cds.MS.gene90632.t1;Parent=MS.gene90632.t1
chr2.1	exon	16925459	16925532	16925459	ID=MS.gene90632.t1.exon6;Parent=MS.gene90632.t1
chr2.1	CDS	16925459	16925532	16925459	ID=cds.MS.gene90632.t1;Parent=MS.gene90632.t1
chr2.1	exon	16925638	16925734	16925638	ID=MS.gene90632.t1.exon7;Parent=MS.gene90632.t1
chr2.1	CDS	16925638	16925734	16925638	ID=cds.MS.gene90632.t1;Parent=MS.gene90632.t1
chr2.1	exon	16926355	16926421	16926355	ID=MS.gene90632.t1.exon8;Parent=MS.gene90632.t1
chr2.1	CDS	16926355	16926421	16926355	ID=cds.MS.gene90632.t1;Parent=MS.gene90632.t1
chr2.1	exon	16926784	16926855	16926784	ID=MS.gene90632.t1.exon9;Parent=MS.gene90632.t1
chr2.1	CDS	16926784	16926855	16926784	ID=cds.MS.gene90632.t1;Parent=MS.gene90632.t1
chr2.1	exon	16926979	16927145	16926979	ID=MS.gene90632.t1.exon10;Parent=MS.gene90632.t1
chr2.1	CDS	16926979	16927145	16926979	ID=cds.MS.gene90632.t1;Parent=MS.gene90632.t1

Gene Sequence

>MS.gene90632

ATGGCGGTTGTTTTTATATTCACCGCCATATTGTTAACGGCGGCGACGGTGATTGTTTCTGGATCTCCGGCGACTCTAACGTTGGAAAGAGCTTTTCCGACGAATCATGGAATTGAGCTGAATCAGCTCAAAGCTAGAGACTTGTTAAGGCATGGTAGATTCTTGCAGTCTTCTTCAAATGGTGTTGTTGATTTCGCTGTCCATGGTACCTTTGATCCATTCCAAGTCGGGTAATTCAATCGAATTTCACTTTTTTGATAAAGGGTTGGTTTTACTTTTTCATGTTTTTGGTTTCGTGTGTTTGAATCAAGTTGAATGCTTTTTGGATTTTTGGTGGATTTTGAGTAATGGGTTTCTTAATTTGGTTAGAATCTTATCTTTAATTCTTCAATTTATGGTAATATCAACATTGATGTTTTTTTTCTTCCTTTTATGATCAGTTTAGAGTGTTCTTTTATTCATGTTTCTCTATTTGTTTAGTCATTAAAAGTTTACAACAAACAAAGATTGCTTGATTTAGTTTAGTTTAGTTTAGTTCTCTATGGCTAGAGAATTTCAATTTTGTTTTCTATTTTTGGAAACTTGAAGATAGTTTCTTTAAGTGATGATAGGCCAATATATGGTTTCTATAAGTGATTCTAAATTGCTTTCATGATTTCGTTCAAGTTTGTTTTTCTGCATCAACACTTCAGATTGAAGGTGTGTCGGTGTCTGACACGAGACACTTCAGTTTCTTAGCACCAACACTTCTAAATTGCTTTCTTAATTTCCTTCAAGTTAGTTTTGCTTACATTCAAATTTCAATCATTCGATTTGCGTAAGTGTCGTGTTGGGTGTCCATCTTAGTGCAGCTTATCTTTTCCTCTTTGCATTATATCTTATCTTTTTGTGTGTGCGTGCGCGTGTGTTTGATTTAAAATTGATGGACTATTGCAGGCTCTATTTTACAAAGGTGCAGTTAGGTACTCCTCCAGTTGAATTTTATGTGCAAATTGACACTGGAAGTGATGTTCTCTGGGTCAGTTGTAGCTCTTGCAACGGTTGTCCACAGACAAGTGGGTTGCAGGTAAATTCAATTTTCTCTATTTGTTGATTATGTATCATGTTTGCAGAACAGTGAACAATGTAGAGATGGAATATGTCAATATAATGGTTTACTGTTTATGGATTATGTCACAGATTGAGCTCAATTTTTTCGACCCTAGGAGTTCATCAACATCCTCGTTAATCTCTTGTTCTGACAAAAGGTGCAACAGTGGAATACAATCATCAGACGCAACCTGTTCCAGTCAGACCAACCAGTGCTCTTACACTTTCCAGTATGGAGATGGTAGCGGAACCTCAGGCTATTACGTGTCTGATACAATGCATTTGGATACTATTTTTGAGGGATCCGTGTCTACAAATTCTTCAGCTCCTGTAGTTTTTGGGTGAGCTTTCATGAGCATGAAATGGTTGATATTTGATAGTGTTTCTTTTTTTTCCTTCGTGTTTATTGGTTTAATCTAATCTCGGAAACCGTTACTTTGTGAATCGAGCAGTTGTAGTAACCAGCAGAGTGGAGACTTGACAAAATCTGACAGAGCAGTTGATGGTATATTTGGATTTGGGCAACAGCAAATGTCTGTGATCTCACAGCTCTCATCACAAGGGATTGCTTCTGGAGTATTCTCTCATTGTCTTAGAGGAGATAGCTCTGGTGGAGGAATTCTGGTTCTTGGTGAGATTGTGGAGCCTAACATAGTTTATACTCCACTTGTTCCATCACAGTAAGCCCTTGAAAATAAAATTGCTATTAATTAAACCTTCTTTTCGTTAACTTAAGTATCCATGATGAGAGCAATCTCAATTCTTTATTAAAAGTAGCTAGCAATCAGAGATCTGTGTGTTTGTTCTTAGGACCACGAGCATAATCAAATGTTAAGTTTTTAGCTAACTGAACCCATTTTCAAATATTTCAGGCCTCATTACAACTTAAACCTACAGAGCATATCTGTCAACGGCCAGGCACTTCAAGTCGATCCATCAGTTTTTGCAACATCAAGCAACAGAGGCACCATTGTTGATTCTGGAACAACTTTAGCATACCTTGCAGAAGAGGCTTATGATCCCTTTGTCAATGCGGTGAGTTTCTTTTGGGTAATTTCAAGCTTATTCAATTTATCATTAACATTATGTTGCTTTAGGCTTTAATGCTTTAATGCTTTATGCATTACTTAGCAATCATGTCATGTTTTTGGCTTGGTTGGAGATTTATCAAACATTGATGGTAAAATGATTTTTCAACTACTGCAGATTACAGCTACAATACCACAATCTGTACGTACGGTTGTTTCCAGGGGAAATCAATGTTTCTTAATTACCGACAGGTTAGGATGTTTTTATTTCCATTTGTACATTTTTTACGATTATGTGGTATAAATAGATCATCTTGATGCTCTTTTTTCTAACTCCTTTCGTATTATTGTGTTTAGTGTCACTAACATATTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGGTTTTAAGACCACAGGACTACCTTATACAACAGAATTCTATTGTACGTATTCAAGCTTCAATTTTTTCTTTTTCATTTTTCTGAGGATTGGTTTGGATTTTGTCATTTCCAAAGATAATACTTTTAAGTTAGAGTGAGTTGCAGTTGGCAGTTATAGAAGTGTCGCTGTCTAATGAAATCCATTAATCTGATTTTGATTTTACTTTGCTTCTAAAGATGCCTAATGTGCCTTTCTTTACGACATTTTACATGATGGCTTATTGTATTGAACGAATCATTTATTAAGGCATAGGATACTGCCGAAATTATTCTCAAGTACTACAAACTCAATTTGCAATTCTAATATATTTGGTTTAAAATTTCCTTTATTATCCTTGCAATCTATCTGTTTAGTTGAGTGCATTAGCAGGATACAAACAAAGAAAGACAATTTTTCTTGTAATTAACATTACATGTCATTTTCCATCTGAAATCTATTACTTTTTAGTGTAGAGAAAGGTTTAAGACGTGTCTTAGATATTTACACCAAATTCTTAGATATTGTTGATTCCTTTGATTACATGCATTTATTTTTCATATTCAGCTTATGCTTCACTTTGTTTGGTTTTTATATGCCGTATGTTTTCTCACTAAATGCTACGGTGAACCTATGCATGTTACAGGGTGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAAGCCAGGGTCAAGGAGTAACAATTCTAGGAGGTATAATACCACTTTGAACTCAAAAATTTAGATCATGAACCAATATTTAGAAGGAAATGTTTATATTGATTATATCTTACTTTATTCCACGTATAAACTTTTAGTATGAAATTATTACCTCCTCCTGTTTTACCTTCTTGCCCCGCCTTCGGCCAAAAAATGATCACCATTACTATTGGGATTTAAAATTAGTATGATTTACAATTATCCCATTAAAAACAATGATATACACTTAAAAGTATCATTCATGTACTTAAATTATTGTTCATAAATAATCTGTTAGGGATATTTTTTTTCCTTCAAGAGTGTTATACAACTATTACTAACAACATCACTTCTTTGACTTCTTTGTGTTTTGGCAGATCTCGTATTAAAAGACAAAATTGTTGTTTACGATCTGGTCGGTCAACGCATTGGATGGGCTAACTATGACTGTAAGTTTCAGCTACACTACCAGAAAGACATATAGTGAATTTCATATGGAAAGATTTATCTTTTTTATTATCCTTGACATTGCATTAGATTCTAATCATGCTGTTTTTAATTAAACAATGCAGGTTCTTTGACAGTTAATGTTTCTGCATCAACTGGCACTGGCAGAAGTGAATACGTGAATGCTGGAGAGATAGGTGGAAGCAATTCTTTACATGATGGACTTGCGTCGTCAAAGACAGGGTTTATAGCACTCTTTGTAACACTGATTTGCAGCTTTGGTTTTTTATAG

Protein sequence

>MS.gene90632.t1

MAVVFIFTAILLTAATVIVSGSPATLTLERAFPTNHGIELNQLKARDLLRHGRFLQSSSNGVVDFAVHGTFDPFQVGLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCSSCNGCPQTSGLQIELNFFDPRSSSTSSLISCSDKRCNSGIQSSDATCSSQTNQCSYTFQYGDGSGTSGYYVSDTMHLDTIFEGSVSTNSSAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQQMSVISQLSSQGIASGVFSHCLRGDSSGGGILVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQALQVDPSVFATSSNRGTIVDSGTTLAYLAEEAYDPFVNAITATIPQSVRTVVSRGNQCFLITDSVTNIFPQVSLNFAGGASMVLRPQDYLIQQNSIGGAAVWCIGFQKSQGQGVTILGDLVLKDKIVVYDLVGQRIGWANYDCSLTVNVSASTGTGRSEYVNAGEIGGSNSLHDGLASSKTGFIALFVTLICSFGFL