Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90728.t1 | XP_003589339.1 | 97.8 | 696 | 13 | 1 | 1 | 696 | 1 | 694 | 0.00E+00 | 1429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90728.t1 | Q9MAJ7 | 73.3 | 693 | 180 | 4 | 6 | 696 | 8 | 697 | 0.0e+00 | 1087.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90728.t1 | G7I5V0 | 97.8 | 696 | 13 | 1 | 1 | 696 | 1 | 694 | 0.0e+00 | 1429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90728 | MS.gene010574 | PPI |
| MS.gene59424 | MS.gene90728 | PPI |
| MS.gene64717 | MS.gene90728 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90728.t1 | MTR_1g023120 | 97.845 | 696 | 13 | 1 | 1 | 696 | 1 | 694 | 0.0 | 1424 |
| MS.gene90728.t1 | MTR_1g023120 | 98.276 | 638 | 9 | 1 | 59 | 696 | 1 | 636 | 0.0 | 1312 |
| MS.gene90728.t1 | MTR_3g112370 | 79.113 | 699 | 137 | 5 | 1 | 696 | 1 | 693 | 0.0 | 1157 |
| MS.gene90728.t1 | MTR_5g021190 | 72.166 | 697 | 187 | 4 | 1 | 696 | 1 | 691 | 0.0 | 1066 |
| MS.gene90728.t1 | MTR_8g016230 | 66.236 | 696 | 220 | 9 | 8 | 696 | 4 | 691 | 0.0 | 947 |
| MS.gene90728.t1 | MTR_2g039120 | 62.464 | 698 | 253 | 6 | 1 | 696 | 3 | 693 | 0.0 | 924 |
| MS.gene90728.t1 | MTR_2g039120 | 62.410 | 697 | 253 | 6 | 1 | 695 | 3 | 692 | 0.0 | 922 |
| MS.gene90728.t1 | MTR_2g100110 | 65.828 | 676 | 222 | 7 | 25 | 696 | 24 | 694 | 0.0 | 920 |
| MS.gene90728.t1 | MTR_1g018200 | 63.259 | 675 | 241 | 6 | 25 | 696 | 27 | 697 | 0.0 | 910 |
| MS.gene90728.t1 | MTR_2g039120 | 61.392 | 632 | 236 | 5 | 1 | 631 | 3 | 627 | 0.0 | 818 |
| MS.gene90728.t1 | MTR_2g100110 | 67.135 | 569 | 180 | 5 | 25 | 590 | 24 | 588 | 0.0 | 801 |
| MS.gene90728.t1 | MTR_2g094020 | 55.007 | 709 | 274 | 9 | 9 | 696 | 7 | 691 | 0.0 | 794 |
| MS.gene90728.t1 | MTR_2g094060 | 55.429 | 700 | 281 | 10 | 9 | 696 | 7 | 687 | 0.0 | 787 |
| MS.gene90728.t1 | MTR_2g094060 | 55.429 | 700 | 281 | 10 | 9 | 696 | 7 | 687 | 0.0 | 787 |
| MS.gene90728.t1 | MTR_2g094060 | 55.524 | 697 | 279 | 10 | 9 | 693 | 7 | 684 | 0.0 | 786 |
| MS.gene90728.t1 | MTR_2g039120 | 62.606 | 591 | 214 | 4 | 1 | 590 | 3 | 587 | 0.0 | 783 |
| MS.gene90728.t1 | MTR_4g059680 | 55.271 | 702 | 284 | 12 | 9 | 696 | 8 | 693 | 0.0 | 762 |
| MS.gene90728.t1 | MTR_3g096900 | 51.149 | 696 | 320 | 9 | 13 | 696 | 14 | 701 | 0.0 | 719 |
| MS.gene90728.t1 | MTR_3g096900 | 51.079 | 695 | 320 | 9 | 13 | 695 | 14 | 700 | 0.0 | 717 |
| MS.gene90728.t1 | MTR_8g085210 | 50.142 | 706 | 306 | 10 | 28 | 696 | 49 | 745 | 0.0 | 696 |
| MS.gene90728.t1 | MTR_2g042610 | 47.242 | 707 | 349 | 11 | 7 | 696 | 3 | 702 | 0.0 | 661 |
| MS.gene90728.t1 | MTR_3g096900 | 51.530 | 621 | 285 | 7 | 13 | 625 | 14 | 626 | 0.0 | 644 |
| MS.gene90728.t1 | MTR_5g024080 | 47.724 | 681 | 334 | 10 | 29 | 696 | 10 | 681 | 0.0 | 638 |
| MS.gene90728.t1 | MTR_3g088520 | 48.770 | 691 | 310 | 13 | 11 | 696 | 7 | 658 | 0.0 | 635 |
| MS.gene90728.t1 | MTR_5g025830 | 47.275 | 679 | 337 | 12 | 29 | 696 | 28 | 696 | 0.0 | 631 |
| MS.gene90728.t1 | MTR_3g096910 | 49.537 | 648 | 309 | 10 | 29 | 669 | 27 | 663 | 0.0 | 631 |
| MS.gene90728.t1 | MTR_3g005570 | 45.545 | 707 | 361 | 12 | 3 | 696 | 2 | 697 | 0.0 | 625 |
| MS.gene90728.t1 | MTR_3g117840 | 46.667 | 645 | 324 | 12 | 28 | 665 | 34 | 665 | 0.0 | 605 |
| MS.gene90728.t1 | MTR_4g073290 | 45.740 | 669 | 340 | 11 | 10 | 665 | 3 | 661 | 0.0 | 602 |
| MS.gene90728.t1 | MTR_3g088520 | 48.598 | 642 | 287 | 12 | 59 | 696 | 1 | 603 | 0.0 | 588 |
| MS.gene90728.t1 | MTR_3g096910 | 44.847 | 524 | 271 | 10 | 153 | 669 | 1 | 513 | 3.72e-149 | 446 |
| MS.gene90728.t1 | MTR_4g126330 | 38.015 | 413 | 156 | 6 | 284 | 695 | 131 | 444 | 3.68e-80 | 263 |
| MS.gene90728.t1 | MTR_4g126330 | 81.522 | 92 | 17 | 0 | 84 | 175 | 25 | 116 | 1.96e-44 | 166 |
| MS.gene90728.t1 | MTR_5g022590 | 42.357 | 314 | 142 | 7 | 48 | 359 | 11 | 287 | 4.08e-72 | 240 |
| MS.gene90728.t1 | MTR_2g100000 | 32.967 | 364 | 190 | 11 | 39 | 366 | 64 | 409 | 4.35e-37 | 148 |
| MS.gene90728.t1 | MTR_3g005610 | 31.760 | 233 | 147 | 6 | 435 | 663 | 26 | 250 | 4.41e-29 | 118 |
| MS.gene90728.t1 | MTR_2g059440 | 32.900 | 231 | 142 | 8 | 435 | 661 | 26 | 247 | 9.71e-28 | 114 |
| MS.gene90728.t1 | MTR_2g059430 | 29.167 | 216 | 113 | 6 | 446 | 661 | 4 | 179 | 1.60e-18 | 85.9 |
| MS.gene90728.t1 | MTR_2g100000 | 31.010 | 287 | 146 | 11 | 115 | 366 | 2 | 271 | 1.20e-17 | 87.4 |
| MS.gene90728.t1 | MTR_8g076800 | 59.259 | 54 | 22 | 0 | 147 | 200 | 6 | 59 | 4.12e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90728.t1 | AT1G45130 | 73.304 | 693 | 180 | 4 | 6 | 696 | 8 | 697 | 0.0 | 1085 |
| MS.gene90728.t1 | AT4G36360 | 70.173 | 694 | 204 | 2 | 4 | 696 | 8 | 699 | 0.0 | 1055 |
| MS.gene90728.t1 | AT4G36360 | 70.173 | 694 | 204 | 2 | 4 | 696 | 8 | 699 | 0.0 | 1055 |
| MS.gene90728.t1 | AT1G45130 | 73.147 | 607 | 160 | 2 | 91 | 696 | 14 | 618 | 0.0 | 954 |
| MS.gene90728.t1 | AT3G13750 | 65.086 | 696 | 228 | 8 | 5 | 696 | 16 | 700 | 0.0 | 937 |
| MS.gene90728.t1 | AT4G26140 | 62.229 | 691 | 249 | 8 | 9 | 696 | 12 | 693 | 0.0 | 911 |
| MS.gene90728.t1 | AT3G52840 | 62.592 | 679 | 245 | 6 | 22 | 696 | 73 | 746 | 0.0 | 907 |
| MS.gene90728.t1 | AT3G52840 | 62.592 | 679 | 245 | 6 | 22 | 696 | 19 | 692 | 0.0 | 905 |
| MS.gene90728.t1 | AT4G26140 | 60.224 | 714 | 251 | 8 | 9 | 696 | 12 | 718 | 0.0 | 900 |
| MS.gene90728.t1 | AT4G26140 | 60.168 | 713 | 251 | 8 | 9 | 695 | 12 | 717 | 0.0 | 899 |
| MS.gene90728.t1 | AT5G56870 | 59.971 | 697 | 273 | 5 | 1 | 696 | 1 | 692 | 0.0 | 877 |
| MS.gene90728.t1 | AT4G26140 | 62.480 | 621 | 224 | 6 | 9 | 629 | 12 | 623 | 0.0 | 821 |
| MS.gene90728.t1 | AT4G26140 | 62.480 | 621 | 224 | 6 | 9 | 629 | 12 | 623 | 0.0 | 821 |
| MS.gene90728.t1 | AT4G26140 | 62.440 | 623 | 223 | 7 | 9 | 629 | 12 | 625 | 0.0 | 819 |
| MS.gene90728.t1 | AT2G28470 | 56.891 | 682 | 272 | 9 | 28 | 696 | 31 | 703 | 0.0 | 786 |
| MS.gene90728.t1 | AT2G28470 | 56.891 | 682 | 272 | 9 | 28 | 696 | 31 | 703 | 0.0 | 786 |
| MS.gene90728.t1 | AT2G28470 | 56.891 | 682 | 272 | 9 | 28 | 696 | 25 | 697 | 0.0 | 786 |
| MS.gene90728.t1 | AT2G28470 | 56.891 | 682 | 272 | 9 | 28 | 696 | 25 | 697 | 0.0 | 786 |
| MS.gene90728.t1 | AT2G28470 | 56.912 | 680 | 271 | 9 | 27 | 693 | 30 | 700 | 0.0 | 785 |
| MS.gene90728.t1 | AT4G26140 | 65.428 | 538 | 179 | 5 | 25 | 560 | 25 | 557 | 0.0 | 746 |
| MS.gene90728.t1 | AT4G26140 | 62.745 | 561 | 181 | 5 | 25 | 560 | 25 | 582 | 0.0 | 736 |
| MS.gene90728.t1 | AT4G26140 | 62.745 | 561 | 181 | 5 | 25 | 560 | 25 | 582 | 0.0 | 736 |
| MS.gene90728.t1 | AT5G63810 | 49.008 | 706 | 345 | 7 | 1 | 696 | 4 | 704 | 0.0 | 721 |
| MS.gene90728.t1 | AT2G32810 | 48.960 | 721 | 329 | 10 | 6 | 696 | 15 | 726 | 0.0 | 709 |
| MS.gene90728.t1 | AT2G32810 | 48.960 | 721 | 329 | 10 | 6 | 696 | 15 | 726 | 0.0 | 708 |
| MS.gene90728.t1 | AT5G20710 | 48.794 | 705 | 345 | 9 | 1 | 696 | 1 | 698 | 0.0 | 679 |
| MS.gene90728.t1 | AT1G31740 | 47.295 | 647 | 304 | 7 | 29 | 665 | 22 | 641 | 0.0 | 626 |
| MS.gene90728.t1 | AT1G77410 | 47.770 | 695 | 316 | 16 | 9 | 696 | 8 | 662 | 0.0 | 618 |
| MS.gene90728.t1 | AT1G77410 | 47.429 | 700 | 316 | 17 | 9 | 696 | 8 | 667 | 0.0 | 612 |
| MS.gene90728.t1 | AT5G63800 | 47.768 | 672 | 316 | 14 | 9 | 665 | 10 | 661 | 0.0 | 609 |
| MS.gene90728.t1 | AT2G16730 | 46.071 | 649 | 325 | 10 | 28 | 665 | 43 | 677 | 0.0 | 590 |
| MS.gene90728.t1 | AT4G35010 | 44.961 | 645 | 338 | 10 | 28 | 665 | 40 | 674 | 0.0 | 572 |
| MS.gene90728.t1 | AT4G38590 | 44.788 | 614 | 321 | 10 | 59 | 665 | 1 | 603 | 3.63e-179 | 531 |
| MS.gene90728.t1 | AT4G38590 | 44.013 | 618 | 324 | 11 | 55 | 665 | 65 | 667 | 8.97e-171 | 517 |
| MS.gene90728.t1 | AT1G77410 | 46.435 | 575 | 264 | 15 | 129 | 696 | 19 | 556 | 5.79e-160 | 478 |
| MS.gene90728.t1 | AT1G77410 | 46.435 | 575 | 264 | 15 | 129 | 696 | 19 | 556 | 5.79e-160 | 478 |
| MS.gene90728.t1 | AT5G20710 | 43.687 | 499 | 266 | 8 | 207 | 696 | 1 | 493 | 1.06e-140 | 426 |
| MS.gene90728.t1 | AT2G04060 | 32.703 | 370 | 171 | 9 | 294 | 662 | 23 | 315 | 1.70e-51 | 186 |
| MS.gene90728.t1 | AT1G72990 | 34.943 | 352 | 190 | 10 | 39 | 360 | 18 | 360 | 1.39e-44 | 170 |
| MS.gene90728.t1 | AT1G72990 | 34.943 | 352 | 190 | 10 | 39 | 360 | 73 | 415 | 1.89e-44 | 170 |
| MS.gene90728.t1 | AT1G72990 | 34.943 | 352 | 190 | 10 | 39 | 360 | 73 | 415 | 1.89e-44 | 170 |
| MS.gene90728.t1 | AT1G72990 | 33.724 | 341 | 187 | 10 | 50 | 360 | 22 | 353 | 4.33e-39 | 154 |
| MS.gene90728.t1 | AT2G04062 | 41.279 | 172 | 80 | 2 | 29 | 200 | 7 | 157 | 9.72e-35 | 129 |
Find 171 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACTTGTGAAAGAATTAT+TGG | 0.133829 | 1.4:+1546186 | None:intergenic |
| TTCTTCTCTATCTTCTTTCT+TGG | 0.154990 | 1.4:-1547124 | MS.gene90728:CDS |
| TTTAGGCTTGTATGGTTTAT+TGG | 0.180144 | 1.4:+1545622 | None:intergenic |
| GACAGAAGTTTCACATTTAA+TGG | 0.195286 | 1.4:-1543951 | MS.gene90728:CDS |
| CTGACTTCCATGATTCAAAA+TGG | 0.224983 | 1.4:+1543765 | None:intergenic |
| AATTACAAATCAACCTTAAA+AGG | 0.254271 | 1.4:+1546376 | None:intergenic |
| CACAAACAGGTTGGCCTAAA+GGG | 0.285334 | 1.4:-1543557 | MS.gene90728:intron |
| TCCTTCAAATGACCATATTT+AGG | 0.289683 | 1.4:+1545063 | None:intergenic |
| TCAAGACCATGAAGCAAAAT+TGG | 0.291254 | 1.4:+1543731 | None:intergenic |
| CAGGCACATGTATTCTCTTC+AGG | 0.295596 | 1.4:-1544886 | MS.gene90728:CDS |
| GGAAGAGCACTTGGAGCTTC+TGG | 0.302471 | 1.4:-1545990 | MS.gene90728:CDS |
| AATCACAGCTTCTAGACTTC+TGG | 0.310113 | 1.4:-1544521 | MS.gene90728:CDS |
| CTGGTCATGCATACTCAAAC+TGG | 0.311005 | 1.4:-1545971 | MS.gene90728:CDS |
| CAAGAGTAACCTTCAATAAT+AGG | 0.311719 | 1.4:-1544816 | MS.gene90728:CDS |
| TTATTGATACTTATGTGTTT+TGG | 0.314153 | 1.4:-1546853 | MS.gene90728:CDS |
| TTAGGCTTGTATGGTTTATT+GGG | 0.316421 | 1.4:+1545623 | None:intergenic |
| GGCTAACTCACCACTGGATC+TGG | 0.328635 | 1.4:+1545882 | None:intergenic |
| GATCCTACTGTTACATCATT+AGG | 0.334094 | 1.4:-1544994 | MS.gene90728:CDS |
| TATACTTCAGGGGTGCTTCT+TGG | 0.336445 | 1.4:+1547007 | None:intergenic |
| TAGAATTGCTAGGCAACATT+TGG | 0.341066 | 1.4:+1544602 | None:intergenic |
| TTGTAGATTGAGAATGAGTA+TGG | 0.341574 | 1.4:-1546020 | MS.gene90728:intron |
| GTTTGGTTGAAGTATGTTCC+TGG | 0.342045 | 1.4:-1546424 | MS.gene90728:CDS |
| GTCCATAGTTTAGGCTTGTA+TGG | 0.356806 | 1.4:+1545614 | None:intergenic |
| GGCATTGGACATGAGCAGTA+TGG | 0.356871 | 1.4:-1543312 | MS.gene90728:CDS |
| CACTAACCATATTCATCAAT+TGG | 0.357740 | 1.4:+1545176 | None:intergenic |
| CTTTATGTACATCTTAGAAT+TGG | 0.367311 | 1.4:-1546585 | MS.gene90728:CDS |
| TTGTTAAGAGAACCTAAATA+TGG | 0.367945 | 1.4:-1545075 | MS.gene90728:CDS |
| GACAAAGCATAGGAAGATAT+TGG | 0.368369 | 1.4:-1543265 | MS.gene90728:CDS |
| CAAGCAATGTGAACATGCTT+TGG | 0.368637 | 1.4:-1545025 | MS.gene90728:CDS |
| TAAGTATCCTCCCTGATTGT+AGG | 0.369275 | 1.4:-1544768 | MS.gene90728:CDS |
| TTTGTAGAGGATTTCCTGTT+TGG | 0.373160 | 1.4:-1546441 | MS.gene90728:intron |
| GATGCTCCAATTGATGAATA+TGG | 0.376118 | 1.4:-1545182 | MS.gene90728:intron |
| AGCAAACTATCATTCTAATT+CGG | 0.377966 | 1.4:-1544842 | MS.gene90728:CDS |
| AACCATACAAGCCTAAACTA+TGG | 0.381218 | 1.4:-1545616 | MS.gene90728:CDS |
| ACTAATTTCGGACGATCGGC+TGG | 0.381654 | 1.4:-1545236 | MS.gene90728:CDS |
| AATACATCTGTCCTACAATC+AGG | 0.390545 | 1.4:+1544757 | None:intergenic |
| ACAATCAGGGAGGATACTTA+TGG | 0.396888 | 1.4:+1544771 | None:intergenic |
| GATTAGGTACAGGTGTCCCT+TGG | 0.398070 | 1.4:-1545929 | MS.gene90728:CDS |
| GCAATTCTAAGTTGTTATCA+TGG | 0.405026 | 1.4:-1544588 | MS.gene90728:CDS |
| GAATAGTAAGAGAAGAAGCT+TGG | 0.405168 | 1.4:+1547144 | None:intergenic |
| CTCCAAGTGCTCTTCCTTGT+GGG | 0.408569 | 1.4:+1545997 | None:intergenic |
| GTATGGGAAAGGGTCAAGTA+TGG | 0.409540 | 1.4:-1543295 | MS.gene90728:CDS |
| AGTTGCCCGTTTCATACAAA+AGG | 0.416486 | 1.4:-1545398 | MS.gene90728:CDS |
| GAGATCCTGAACTGGTCGCT+GGG | 0.418111 | 1.4:+1545429 | None:intergenic |
| TACCACGGAGGAACTAATTT+CGG | 0.421462 | 1.4:-1545248 | MS.gene90728:CDS |
| GTCATAGTGCCTATTATTGA+AGG | 0.422552 | 1.4:+1544807 | None:intergenic |
| AAAACCAGCCACAGTTGAAA+TGG | 0.423005 | 1.4:-1543463 | MS.gene90728:CDS |
| TATTGGATGGTTTATGCAAA+GGG | 0.424414 | 1.4:-1543248 | MS.gene90728:CDS |
| CAGAGATGAGGATTCTCCTT+TGG | 0.426691 | 1.4:+1547044 | None:intergenic |
| GAGACACTAGTGATTATCTA+TGG | 0.428636 | 1.4:-1544480 | MS.gene90728:CDS |
| GTTTGTGCTGAGTGGAACTT+TGG | 0.434468 | 1.4:-1546555 | MS.gene90728:CDS |
| CGAGATCCTGAACTGGTCGC+TGG | 0.435286 | 1.4:+1545428 | None:intergenic |
| ATGGAGTCTCATCTGTTGAT+TGG | 0.444222 | 1.4:-1543508 | MS.gene90728:CDS |
| CAGGCTCATTTCAATGCACC+TGG | 0.449589 | 1.4:-1543350 | MS.gene90728:CDS |
| CAAGACTCAGTCCATAGTTT+AGG | 0.452569 | 1.4:+1545605 | None:intergenic |
| TGTGCCATTTCAACTGTGGC+TGG | 0.453005 | 1.4:+1543459 | None:intergenic |
| CTGTCAAATCCTTCTGTCCA+TGG | 0.453029 | 1.4:+1543708 | None:intergenic |
| GGCACTATGACTTGCCTCCT+TGG | 0.459047 | 1.4:-1544795 | MS.gene90728:CDS |
| ATTGCTTGATAGCTTTATGA+AGG | 0.461553 | 1.4:+1545040 | None:intergenic |
| CGAAGATACATCTTCATCAT+AGG | 0.461768 | 1.4:+1544561 | None:intergenic |
| GCACTTCTTAGTGTAGCTGT+TGG | 0.465181 | 1.4:-1543894 | MS.gene90728:CDS |
| GGAACATACTTCAACCAAAC+AGG | 0.465558 | 1.4:+1546427 | None:intergenic |
| AGCATTAGTGTGCATTCCTC+TGG | 0.470893 | 1.4:-1544252 | MS.gene90728:CDS |
| ATTAGGTACAGGTGTCCCTT+GGG | 0.473811 | 1.4:-1545928 | MS.gene90728:CDS |
| AGAAAAGCTATTATCATCAA+TGG | 0.476920 | 1.4:-1547067 | MS.gene90728:CDS |
| AATGTTCATGAACCTTCTCC+TGG | 0.479007 | 1.4:-1546830 | MS.gene90728:CDS |
| ATCATTAGGAGCATATGAAC+AGG | 0.480489 | 1.4:-1544980 | MS.gene90728:intron |
| AAGAAGCTTGGAAACTGAGT+TGG | 0.482640 | 1.4:+1547156 | None:intergenic |
| GCTCCAAGTGCTCTTCCTTG+TGG | 0.484823 | 1.4:+1545996 | None:intergenic |
| TTCCAGAATAGTACATTGCC+AGG | 0.487352 | 1.4:+1546812 | None:intergenic |
| GGCCCTATCGACCTACGTGC+TGG | 0.488146 | 1.4:-1543930 | MS.gene90728:CDS |
| GCACAAACAGGTTGGCCTAA+AGG | 0.491604 | 1.4:-1543558 | MS.gene90728:intron |
| CAAAGGAGAATCCTCATCTC+TGG | 0.492293 | 1.4:-1547043 | MS.gene90728:CDS |
| GCTAACTCACCACTGGATCT+GGG | 0.494475 | 1.4:+1545883 | None:intergenic |
| GCGAAATGCCAAGTTGGTTG+TGG | 0.495089 | 1.4:-1543185 | MS.gene90728:CDS |
| TGGAGTCTCATCTGTTGATT+GGG | 0.497847 | 1.4:-1543507 | MS.gene90728:CDS |
| TTCATTCTTTAATTATTACA+TGG | 0.500991 | 1.4:-1545371 | MS.gene90728:intron |
| CATGGACAGAAGGATTTGAC+AGG | 0.501539 | 1.4:-1543707 | MS.gene90728:CDS |
| CTAAACTATGGACTGAGTCT+TGG | 0.504621 | 1.4:-1545604 | MS.gene90728:CDS |
| TTCCACTCAGCACAAACATA+AGG | 0.505669 | 1.4:+1546561 | None:intergenic |
| GTTCCAGCACGTAGGTCGAT+AGG | 0.511189 | 1.4:+1543927 | None:intergenic |
| CTGATTCAGAAAGCAAAAGA+TGG | 0.512055 | 1.4:-1546887 | MS.gene90728:CDS |
| GCTGTCCATGTGTTTATCAA+TGG | 0.515626 | 1.4:-1544225 | MS.gene90728:CDS |
| TGTAATTCTTGCAACTATGC+CGG | 0.518601 | 1.4:-1543221 | MS.gene90728:CDS |
| TTTGTGCTGAGTGGAACTTT+GGG | 0.518987 | 1.4:-1546554 | MS.gene90728:intron |
| TTTGGTTGAAGTATGTTCCT+GGG | 0.520726 | 1.4:-1546423 | MS.gene90728:CDS |
| CAGAATCATTTCTTCGTGGA+AGG | 0.526155 | 1.4:-1544284 | MS.gene90728:CDS |
| AAGGGTCAAGTATGGATCAA+TGG | 0.526204 | 1.4:-1543287 | MS.gene90728:CDS |
| GGCCCACAAGGAAGAGCACT+TGG | 0.526726 | 1.4:-1545999 | MS.gene90728:CDS |
| ATGAATTTGGTGTCTCCCAA+TGG | 0.527375 | 1.4:-1543527 | MS.gene90728:CDS |
| TGTCCCTTGGGTGATGTGTA+AGG | 0.528527 | 1.4:-1545916 | MS.gene90728:CDS |
| GGTGCTTCTTGGATAATGAA+TGG | 0.528944 | 1.4:+1547018 | None:intergenic |
| GCGAACGCGAGATCCTGAAC+TGG | 0.530322 | 1.4:+1545421 | None:intergenic |
| CTGTCCATGTGTTTATCAAT+GGG | 0.530690 | 1.4:-1544224 | MS.gene90728:CDS |
| TCATAGCTTGTAGTTATGAA+TGG | 0.530733 | 1.4:+1545209 | None:intergenic |
| CTATGCCGGAACTTATCGTC+AGG | 0.531405 | 1.4:-1543207 | MS.gene90728:CDS |
| CAATTCTAAGTTGTTATCAT+GGG | 0.532316 | 1.4:-1544587 | MS.gene90728:CDS |
| TTTCGCCTGACGATAAGTTC+CGG | 0.532860 | 1.4:+1543202 | None:intergenic |
| ACAAACAGGTTGGCCTAAAG+GGG | 0.533011 | 1.4:-1543556 | MS.gene90728:intron |
| ACCTAAATATGGTCATTTGA+AGG | 0.533113 | 1.4:-1545064 | MS.gene90728:CDS |
| ATGGCTGTTGGATTAGGTAC+AGG | 0.534625 | 1.4:-1545939 | MS.gene90728:CDS |
| CTACAGATAAATGCTTGCAA+TGG | 0.542639 | 1.4:-1545668 | MS.gene90728:intron |
| GTTGCCCGTTTCATACAAAA+GGG | 0.543234 | 1.4:-1545397 | MS.gene90728:CDS |
| AATTAGTACCATCTTTGAGT+AGG | 0.543526 | 1.4:+1543158 | None:intergenic |
| GGACATGAGCAGTATGGGAA+AGG | 0.544160 | 1.4:-1543306 | MS.gene90728:CDS |
| GCATTGGACATGAGCAGTAT+GGG | 0.544484 | 1.4:-1543311 | MS.gene90728:CDS |
| ATATTGGATGGTTTATGCAA+AGG | 0.547878 | 1.4:-1543249 | MS.gene90728:CDS |
| TCATGGAAGTCAGGAATCAC+AGG | 0.550670 | 1.4:-1543755 | MS.gene90728:CDS |
| TGGAGTTGAACCATTGGCAT+TGG | 0.550990 | 1.4:-1543327 | MS.gene90728:CDS |
| GGCAACATTTGGATTTGTGA+AGG | 0.551117 | 1.4:+1544613 | None:intergenic |
| ATCAACAGATGAGACTCCAT+TGG | 0.551457 | 1.4:+1543511 | None:intergenic |
| TTCCAGCACGTAGGTCGATA+GGG | 0.552030 | 1.4:+1543928 | None:intergenic |
| GAGGAATGCACACTAATGCT+TGG | 0.552794 | 1.4:+1544255 | None:intergenic |
| AATAGTACATTGCCAGGAGA+AGG | 0.552818 | 1.4:+1546818 | None:intergenic |
| CGTCAGGCGAAATGCCAAGT+TGG | 0.557079 | 1.4:-1543191 | MS.gene90728:CDS |
| TCAACAGATGAGACTCCATT+GGG | 0.557160 | 1.4:+1543512 | None:intergenic |
| TGGTCTTGACCATGGACAGA+AGG | 0.557257 | 1.4:-1543717 | MS.gene90728:CDS |
| ATCAGTTTCAGAACAGATAA+CGG | 0.558879 | 1.4:-1546400 | MS.gene90728:CDS |
| GTTTGCTAGAAAAGCTGCAC+AGG | 0.559158 | 1.4:+1544858 | None:intergenic |
| TAGGTTGTCCACAACCAACT+TGG | 0.560379 | 1.4:+1543177 | None:intergenic |
| GGACTGAGTCTTGGAGTGGT+TGG | 0.562040 | 1.4:-1545595 | MS.gene90728:intron |
| TCATCAGAATCATTTCTTCG+TGG | 0.567472 | 1.4:-1544288 | MS.gene90728:CDS |
| GACATGAGCAGTATGGGAAA+GGG | 0.570823 | 1.4:-1543305 | MS.gene90728:CDS |
| AGATCCTGAACTGGTCGCTG+GGG | 0.571024 | 1.4:+1545430 | None:intergenic |
| TTGCTTCATGGTCTTGACCA+TGG | 0.573358 | 1.4:-1543725 | MS.gene90728:CDS |
| GAAAGCAAAAGATGGAGGGT+TGG | 0.574643 | 1.4:-1546879 | MS.gene90728:CDS |
| GATAACAACTTAGAATTGCT+AGG | 0.576031 | 1.4:+1544592 | None:intergenic |
| GCCAATGGTTCAACTCCACC+AGG | 0.577450 | 1.4:+1543332 | None:intergenic |
| ACCTGGTGGAGTTGAACCAT+TGG | 0.579485 | 1.4:-1543333 | MS.gene90728:CDS |
| ACCTTGTGCCATTTCAACTG+TGG | 0.587399 | 1.4:+1543455 | None:intergenic |
| CTGCTCATGTCCAATGCCAA+TGG | 0.594494 | 1.4:+1543317 | None:intergenic |
| TCTGTTCTGAAACTGATCCC+AGG | 0.600350 | 1.4:+1546406 | None:intergenic |
| GATCCTGAACTGGTCGCTGG+GGG | 0.602834 | 1.4:+1545431 | None:intergenic |
| TGGATCAATGGACAAAGCAT+AGG | 0.604928 | 1.4:-1543275 | MS.gene90728:CDS |
| ATACATCTGTCCTACAATCA+GGG | 0.605634 | 1.4:+1544758 | None:intergenic |
| GCTCCTAATGATGTAACAGT+AGG | 0.606807 | 1.4:+1544991 | None:intergenic |
| AAGCATAGGAAGATATTGGA+TGG | 0.609264 | 1.4:-1543261 | MS.gene90728:CDS |
| GTGGACAACCTACTCAAAGA+TGG | 0.609971 | 1.4:-1543166 | MS.gene90728:CDS |
| GAGAATGAGTATGGCCCACA+AGG | 0.610168 | 1.4:-1546011 | MS.gene90728:CDS |
| GCCCGTTTCATACAAAAGGG+TGG | 0.610405 | 1.4:-1545394 | MS.gene90728:CDS |
| GACCTTATGTTTGTGCTGAG+TGG | 0.610645 | 1.4:-1546563 | MS.gene90728:CDS |
| ATTTCCCATTGATAAACACA+TGG | 0.611686 | 1.4:+1544220 | None:intergenic |
| ATTATCTATGGTATATAACC+AGG | 0.611820 | 1.4:-1544468 | MS.gene90728:intron |
| AGGAACTAATTTCGGACGAT+CGG | 0.614751 | 1.4:-1545240 | MS.gene90728:CDS |
| TTCAGAAAGCAAAAGATGGA+GGG | 0.615815 | 1.4:-1546883 | MS.gene90728:CDS |
| ATTCAGAAAGCAAAAGATGG+AGG | 0.619685 | 1.4:-1546884 | MS.gene90728:CDS |
| GAAAAGCTGTTTCAGTCACA+AGG | 0.621291 | 1.4:-1546213 | MS.gene90728:CDS |
| TGGTCATGCATACTCAAACT+GGG | 0.624854 | 1.4:-1545970 | MS.gene90728:CDS |
| AATTTCGGACGATCGGCTGG+AGG | 0.627314 | 1.4:-1545233 | MS.gene90728:CDS |
| TCTTCCTTACACATCACCCA+AGG | 0.629739 | 1.4:+1545912 | None:intergenic |
| AGATGATGCCCCAGATCCAG+TGG | 0.631725 | 1.4:-1545892 | MS.gene90728:intron |
| CTAACTCACCACTGGATCTG+GGG | 0.639843 | 1.4:+1545884 | None:intergenic |
| GCTCATTTCAATGCACCTGG+TGG | 0.640425 | 1.4:-1543347 | MS.gene90728:CDS |
| AATGAATGGAACCAGAGATG+AGG | 0.654785 | 1.4:+1547032 | None:intergenic |
| CAAACAGGTTGGCCTAAAGG+GGG | 0.660115 | 1.4:-1543555 | MS.gene90728:intron |
| CTATTATCATCAATGGCCAA+AGG | 0.665404 | 1.4:-1547060 | MS.gene90728:CDS |
| CTTCCTTACACATCACCCAA+GGG | 0.670888 | 1.4:+1545913 | None:intergenic |
| TAGTATAGTATATACTTCAG+GGG | 0.680900 | 1.4:+1546997 | None:intergenic |
| GGGAGGATACTTATGGACCA+AGG | 0.681332 | 1.4:+1544778 | None:intergenic |
| CTATGGACTGAGTCTTGGAG+TGG | 0.682332 | 1.4:-1545599 | MS.gene90728:CDS |
| TGAAGATGTATCTTCGCTAG+CGG | 0.687691 | 1.4:-1544554 | MS.gene90728:CDS |
| CACATGGACAGCATCACCAG+AGG | 0.689285 | 1.4:+1544236 | None:intergenic |
| GCCACAGTTGAAATGGCACA+AGG | 0.694536 | 1.4:-1543456 | MS.gene90728:intron |
| GTCCGAAATTAGTTCCTCCG+TGG | 0.697646 | 1.4:+1545246 | None:intergenic |
| AAGCTGTTTCAGTCACAAGG+TGG | 0.721266 | 1.4:-1546210 | MS.gene90728:CDS |
| AATGACAAATGATAGTACCA+CGG | 0.725388 | 1.4:-1545263 | MS.gene90728:intron |
| ATGGACAGAAGGATTTGACA+GGG | 0.731802 | 1.4:-1543706 | MS.gene90728:CDS |
| GAAATGTGTGTAGATGTGGG+AGG | 0.739680 | 1.4:-1546912 | MS.gene90728:intron |
| AGGATACTTATGGACCAAGG+AGG | 0.747272 | 1.4:+1544781 | None:intergenic |
| CATCTGTCCTACAATCAGGG+AGG | 0.749201 | 1.4:+1544761 | None:intergenic |
| GACAAATGATAGTACCACGG+AGG | 0.759475 | 1.4:-1545260 | MS.gene90728:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAAAAAAAAAACTTTT+AGG | - | chr1.4:1544040-1544059 | MS.gene90728:intron | 10.0% |
| !! | AACTTCAAACATTTATTATT+TGG | - | chr1.4:1543803-1543822 | MS.gene90728:intron | 15.0% |
| !! | TATTAATGAATTGATTGTTA+TGG | - | chr1.4:1545665-1545684 | MS.gene90728:CDS | 15.0% |
| !! | TTCATTCTTTAATTATTACA+TGG | - | chr1.4:1544952-1544971 | MS.gene90728:intron | 15.0% |
| !!! | TTTTCTTTTTTTTCATAGAA+TGG | - | chr1.4:1546529-1546548 | MS.gene90728:intron | 15.0% |
| !! | AATAGTATAGTATATACTTC+AGG | + | chr1.4:1543331-1543350 | None:intergenic | 20.0% |
| !! | AATTACAAATCAACCTTAAA+AGG | + | chr1.4:1543950-1543969 | None:intergenic | 20.0% |
| !! | ACAACTAACTTCATAAATAA+TGG | + | chr1.4:1544767-1544786 | None:intergenic | 20.0% |
| !! | ACTCTATTATCTTAACTAAA+AGG | + | chr1.4:1544615-1544634 | None:intergenic | 20.0% |
| !! | ATAATTCGGTTAAAATTAGT+TGG | - | chr1.4:1546157-1546176 | MS.gene90728:intron | 20.0% |
| !! | ATAGTATAGTATATACTTCA+GGG | + | chr1.4:1543330-1543349 | None:intergenic | 20.0% |
| !! | ATTTAGATTAACAATGAGTT+TGG | + | chr1.4:1544585-1544604 | None:intergenic | 20.0% |
| !! | ATTTATCTGTAGGAAAAAAT+TGG | + | chr1.4:1544647-1544666 | None:intergenic | 20.0% |
| !! | TTATGTAGTTAATTCTTGAA+TGG | - | chr1.4:1543985-1544004 | MS.gene90728:intron | 20.0% |
| !! | TTCTTTAATTATTACATGGT+TGG | - | chr1.4:1544956-1544975 | MS.gene90728:intron | 20.0% |
| !!! | GTTTTTTTATTTGTTTGTAG+AGG | - | chr1.4:1543869-1543888 | MS.gene90728:intron | 20.0% |
| !!! | TTATTGATACTTATGTGTTT+TGG | - | chr1.4:1543470-1543489 | MS.gene90728:CDS | 20.0% |
| ! | AAGGAGAAAAGAAAAACAAA+AGG | + | chr1.4:1544824-1544843 | None:intergenic | 25.0% |
| ! | AATTATGTATATGCACAAAC+AGG | - | chr1.4:1546753-1546772 | MS.gene90728:intron | 25.0% |
| ! | AGAAAAGCTATTATCATCAA+TGG | - | chr1.4:1543256-1543275 | MS.gene90728:CDS | 25.0% |
| ! | AGCAAACTATCATTCTAATT+CGG | - | chr1.4:1545481-1545500 | MS.gene90728:intron | 25.0% |
| ! | AGGAGAAAAGAAAAACAAAA+GGG | + | chr1.4:1544823-1544842 | None:intergenic | 25.0% |
| ! | ATTATCTATGGTATATAACC+AGG | - | chr1.4:1545855-1545874 | MS.gene90728:intron | 25.0% |
| ! | ATTTACAAATACCAAGCTAT+TGG | - | chr1.4:1545897-1545916 | MS.gene90728:CDS | 25.0% |
| ! | CAATTCTAAGTTGTTATCAT+GGG | - | chr1.4:1545736-1545755 | MS.gene90728:intron | 25.0% |
| ! | CATAAAATGTATCTTAGACT+CGG | - | chr1.4:1546262-1546281 | MS.gene90728:CDS | 25.0% |
| ! | CTAAAGTAACGACTATATTT+AGG | + | chr1.4:1545194-1545213 | None:intergenic | 25.0% |
| ! | CTTACTTGTGAAAGAATTAT+TGG | + | chr1.4:1544140-1544159 | None:intergenic | 25.0% |
| ! | CTTTATGTACATCTTAGAAT+TGG | - | chr1.4:1543738-1543757 | MS.gene90728:CDS | 25.0% |
| ! | TAAACCAAGATGAGATAATT+CGG | - | chr1.4:1546143-1546162 | MS.gene90728:intron | 25.0% |
| ! | TAGTATAGTATATACTTCAG+GGG | + | chr1.4:1543329-1543348 | None:intergenic | 25.0% |
| ! | TGCTATATTACTATTGCATA+AGG | - | chr1.4:1546716-1546735 | MS.gene90728:intron | 25.0% |
| ! | TTGGTATTTGTAAATCTAGA+GGG | + | chr1.4:1545892-1545911 | None:intergenic | 25.0% |
| ! | TTGTTAAGAGAACCTAAATA+TGG | - | chr1.4:1545248-1545267 | MS.gene90728:CDS | 25.0% |
| !! | AGTTGAAATCTTACTGTTTT+TGG | - | chr1.4:1545984-1546003 | MS.gene90728:CDS | 25.0% |
| !! | TAACTTTTGCTAAAATCACA+GGG | - | chr1.4:1544543-1544562 | MS.gene90728:CDS | 25.0% |
| !! | TTTATCAATGGGAAATTTTC+AGG | - | chr1.4:1546110-1546129 | MS.gene90728:intron | 25.0% |
| !!! | GTTGAAATCTTACTGTTTTT+GGG | - | chr1.4:1545985-1546004 | MS.gene90728:CDS | 25.0% |
| !!! | TCTTTTTTTTCATAGAATGG+TGG | - | chr1.4:1546532-1546551 | MS.gene90728:intron | 25.0% |
| !!! | TTTTTTAGCAGTTATTTCAG+AGG | + | chr1.4:1545383-1545402 | None:intergenic | 25.0% |
| AATGACAAATGATAGTACCA+CGG | - | chr1.4:1545060-1545079 | MS.gene90728:CDS | 30.0% | |
| ACCTAAATATGGTCATTTGA+AGG | - | chr1.4:1545259-1545278 | MS.gene90728:intron | 30.0% | |
| ACTGCAAGAGTAAGAATAAA+AGG | - | chr1.4:1545593-1545612 | MS.gene90728:intron | 30.0% | |
| AGAGATGATAAAGTTCAAGT+TGG | + | chr1.4:1546483-1546502 | None:intergenic | 30.0% | |
| ATATTGGATGGTTTATGCAA+AGG | - | chr1.4:1547074-1547093 | MS.gene90728:CDS | 30.0% | |
| ATCAGTTTCAGAACAGATAA+CGG | - | chr1.4:1543923-1543942 | MS.gene90728:CDS | 30.0% | |
| ATTAAGACAGTGCAGAAAAA+AGG | - | chr1.4:1543714-1543733 | MS.gene90728:CDS | 30.0% | |
| ATTTCCCATTGATAAACACA+TGG | + | chr1.4:1546106-1546125 | None:intergenic | 30.0% | |
| CAAGAGTAACCTTCAATAAT+AGG | - | chr1.4:1545507-1545526 | MS.gene90728:intron | 30.0% | |
| CACTAACCATATTCATCAAT+TGG | + | chr1.4:1545150-1545169 | None:intergenic | 30.0% | |
| CTGCAAGAGTAAGAATAAAA+GGG | - | chr1.4:1545594-1545613 | MS.gene90728:intron | 30.0% | |
| CTTGGTATTTGTAAATCTAG+AGG | + | chr1.4:1545893-1545912 | None:intergenic | 30.0% | |
| GAAGTTAGTTGTGAAAACAA+TGG | - | chr1.4:1544775-1544794 | MS.gene90728:CDS | 30.0% | |
| GACAGAAGTTTCACATTTAA+TGG | - | chr1.4:1546372-1546391 | MS.gene90728:intron | 30.0% | |
| GATAACAACTTAGAATTGCT+AGG | + | chr1.4:1545734-1545753 | None:intergenic | 30.0% | |
| GCAATTCTAAGTTGTTATCA+TGG | - | chr1.4:1545735-1545754 | MS.gene90728:intron | 30.0% | |
| GTAATAAGCAAGATACTAAC+AGG | + | chr1.4:1546459-1546478 | None:intergenic | 30.0% | |
| TAACAATGATCTATGTTTCC+AGG | - | chr1.4:1545418-1545437 | MS.gene90728:CDS | 30.0% | |
| TATTGGATGGTTTATGCAAA+GGG | - | chr1.4:1547075-1547094 | MS.gene90728:CDS | 30.0% | |
| TCCTTCAAATGACCATATTT+AGG | + | chr1.4:1545263-1545282 | None:intergenic | 30.0% | |
| TCGTTAAATAGTTGCTATAG+CGG | - | chr1.4:1546693-1546712 | MS.gene90728:intron | 30.0% | |
| TTAACCGAATTATCTCATCT+TGG | + | chr1.4:1546150-1546169 | None:intergenic | 30.0% | |
| TTAGGCTTGTATGGTTTATT+GGG | + | chr1.4:1544703-1544722 | None:intergenic | 30.0% | |
| TTCCAAATTTGCACTAAATC+AGG | + | chr1.4:1544481-1544500 | None:intergenic | 30.0% | |
| TTCTTCTCTATCTTCTTTCT+TGG | - | chr1.4:1543199-1543218 | MS.gene90728:CDS | 30.0% | |
| TTGTAGATTGAGAATGAGTA+TGG | - | chr1.4:1544303-1544322 | MS.gene90728:CDS | 30.0% | |
| TTTAGGCTTGTATGGTTTAT+TGG | + | chr1.4:1544704-1544723 | None:intergenic | 30.0% | |
| TTTAGGTAGTAGATAGAAGT+TGG | - | chr1.4:1546187-1546206 | MS.gene90728:intron | 30.0% | |
| ! | AACTTTTGCTAAAATCACAG+GGG | - | chr1.4:1544544-1544563 | MS.gene90728:CDS | 30.0% |
| ! | GTAACTTTTGCTAAAATCAC+AGG | - | chr1.4:1544542-1544561 | MS.gene90728:CDS | 30.0% |
| ! | TAATCAAGTTTGAAACCTTC+AGG | - | chr1.4:1546954-1546973 | MS.gene90728:intron | 30.0% |
| ! | TCATAGCTTGTAGTTATGAA+TGG | + | chr1.4:1545117-1545136 | None:intergenic | 30.0% |
| ! | TTAGTGCAAATTTGGAATGA+CGG | - | chr1.4:1544484-1544503 | MS.gene90728:CDS | 30.0% |
| ! | TTTGAAATGTGTGTAGATGT+GGG | - | chr1.4:1543408-1543427 | MS.gene90728:intron | 30.0% |
| !! | ATTGCTTGATAGCTTTATGA+AGG | + | chr1.4:1545286-1545305 | None:intergenic | 30.0% |
| AAAGCAAGGAAAAAGCTAGA+CGG | + | chr1.4:1545951-1545970 | None:intergenic | 35.0% | |
| AACCATACAAGCCTAAACTA+TGG | - | chr1.4:1544707-1544726 | MS.gene90728:intron | 35.0% | |
| AAGCATAGGAAGATATTGGA+TGG | - | chr1.4:1547062-1547081 | MS.gene90728:CDS | 35.0% | |
| AATACATCTGTCCTACAATC+AGG | + | chr1.4:1545569-1545588 | None:intergenic | 35.0% | |
| ATACATCTGTCCTACAATCA+GGG | + | chr1.4:1545568-1545587 | None:intergenic | 35.0% | |
| ATGTATATGCACAAACAGGT+TGG | - | chr1.4:1546757-1546776 | MS.gene90728:intron | 35.0% | |
| ATTCAGAAAGCAAAAGATGG+AGG | - | chr1.4:1543439-1543458 | MS.gene90728:intron | 35.0% | |
| CATTGCAAGCATTTATCTGT+AGG | + | chr1.4:1544657-1544676 | None:intergenic | 35.0% | |
| CGAAGATACATCTTCATCAT+AGG | + | chr1.4:1545765-1545784 | None:intergenic | 35.0% | |
| CTACAGATAAATGCTTGCAA+TGG | - | chr1.4:1544655-1544674 | MS.gene90728:intron | 35.0% | |
| CTATTATCATCAATGGCCAA+AGG | - | chr1.4:1543263-1543282 | MS.gene90728:CDS | 35.0% | |
| CTGACTTCCATGATTCAAAA+TGG | + | chr1.4:1546561-1546580 | None:intergenic | 35.0% | |
| CTGATTCAGAAAGCAAAAGA+TGG | - | chr1.4:1543436-1543455 | MS.gene90728:intron | 35.0% | |
| CTGTCCATGTGTTTATCAAT+GGG | - | chr1.4:1546099-1546118 | MS.gene90728:intron | 35.0% | |
| GAATAGTAAGAGAAGAAGCT+TGG | + | chr1.4:1543182-1543201 | None:intergenic | 35.0% | |
| GACAAAGCATAGGAAGATAT+TGG | - | chr1.4:1547058-1547077 | MS.gene90728:CDS | 35.0% | |
| GAGACACTAGTGATTATCTA+TGG | - | chr1.4:1545843-1545862 | MS.gene90728:intron | 35.0% | |
| GATCCTACTGTTACATCATT+AGG | - | chr1.4:1545329-1545348 | MS.gene90728:intron | 35.0% | |
| GATGCTCCAATTGATGAATA+TGG | - | chr1.4:1545141-1545160 | MS.gene90728:intron | 35.0% | |
| GTCATAGTGCCTATTATTGA+AGG | + | chr1.4:1545519-1545538 | None:intergenic | 35.0% | |
| TAGAATTGCTAGGCAACATT+TGG | + | chr1.4:1545724-1545743 | None:intergenic | 35.0% | |
| TCAAGACCATGAAGCAAAAT+TGG | + | chr1.4:1546595-1546614 | None:intergenic | 35.0% | |
| TCATCAGAATCATTTCTTCG+TGG | - | chr1.4:1546035-1546054 | MS.gene90728:intron | 35.0% | |
| TGCCTGATTTAGTGCAAATT+TGG | - | chr1.4:1544476-1544495 | MS.gene90728:CDS | 35.0% | |
| TGTAATTCTTGCAACTATGC+CGG | - | chr1.4:1547102-1547121 | MS.gene90728:CDS | 35.0% | |
| TGTGAAAGATCAAGAAAGAG+TGG | - | chr1.4:1544232-1544251 | MS.gene90728:CDS | 35.0% | |
| TTAACCCAGAAAAAAGAACC+AGG | + | chr1.4:1544985-1545004 | None:intergenic | 35.0% | |
| TTCAGAAAGCAAAAGATGGA+GGG | - | chr1.4:1543440-1543459 | MS.gene90728:intron | 35.0% | |
| TTTGGTTGAAGTATGTTCCT+GGG | - | chr1.4:1543900-1543919 | MS.gene90728:CDS | 35.0% | |
| TTTGTAGAGGATTTCCTGTT+TGG | - | chr1.4:1543882-1543901 | MS.gene90728:intron | 35.0% | |
| ! | AACCACCCTTTTGTATGAAA+CGG | + | chr1.4:1544934-1544953 | None:intergenic | 35.0% |
| ! | ACCAAATTCTGAAAACCTGA+TGG | + | chr1.4:1544864-1544883 | None:intergenic | 35.0% |
| ! | ATCAGGTTTTCAGAATTTGG+TGG | - | chr1.4:1544863-1544882 | MS.gene90728:CDS | 35.0% |
| ! | ATCATTAGGAGCATATGAAC+AGG | - | chr1.4:1545343-1545362 | MS.gene90728:intron | 35.0% |
| ! | CATTTTGAATCATGGAAGTC+AGG | - | chr1.4:1546559-1546578 | MS.gene90728:CDS | 35.0% |
| ! | GTGGAATCCATTTTGAATCA+TGG | - | chr1.4:1546551-1546570 | MS.gene90728:intron | 35.0% |
| ! | GTGTTGCAGTACAATTTTGA+AGG | - | chr1.4:1543669-1543688 | MS.gene90728:intron | 35.0% |
| ! | GTTTGAAATGTGTGTAGATG+TGG | - | chr1.4:1543407-1543426 | MS.gene90728:intron | 35.0% |
| ! | TGATTCCTATTTCCTTTTGC+AGG | - | chr1.4:1546327-1546346 | MS.gene90728:intron | 35.0% |
| ! | TTATTACATGGTTGGTTACC+TGG | - | chr1.4:1544964-1544983 | MS.gene90728:intron | 35.0% |
| ! | TTGAGTGCTTAACTGATTTC+AGG | - | chr1.4:1545224-1545243 | MS.gene90728:CDS | 35.0% |
| ! | TTTTATTAGTTCCAGCACGT+AGG | + | chr1.4:1546407-1546426 | None:intergenic | 35.0% |
| !! | AACAGATAACGGTCCTTTTA+AGG | - | chr1.4:1543934-1543953 | MS.gene90728:CDS | 35.0% |
| !! | CAATGTACTATTCTGGAATC+TGG | - | chr1.4:1543516-1543535 | MS.gene90728:CDS | 35.0% |
| !! | TGCAGTACAATTTTGAAGGA+AGG | - | chr1.4:1543673-1543692 | MS.gene90728:intron | 35.0% |
| !!! | AATTAGTTGGCGTTGGTTTT+AGG | - | chr1.4:1546170-1546189 | MS.gene90728:intron | 35.0% |
| !!! | GTTACCTGGTTCTTTTTTCT+GGG | - | chr1.4:1544978-1544997 | MS.gene90728:intron | 35.0% |
| AAAACCAGCCACAGTTGAAA+TGG | - | chr1.4:1546860-1546879 | MS.gene90728:CDS | 40.0% | |
| AAGAAGCTTGGAAACTGAGT+TGG | + | chr1.4:1543170-1543189 | None:intergenic | 40.0% | |
| AAGGGTCAAGTATGGATCAA+TGG | - | chr1.4:1547036-1547055 | MS.gene90728:CDS | 40.0% | |
| AATAGTACATTGCCAGGAGA+AGG | + | chr1.4:1543508-1543527 | None:intergenic | 40.0% | |
| AATCACAGCTTCTAGACTTC+TGG | - | chr1.4:1545802-1545821 | MS.gene90728:intron | 40.0% | |
| AATGAATGGAACCAGAGATG+AGG | + | chr1.4:1543294-1543313 | None:intergenic | 40.0% | |
| AATGTTCATGAACCTTCTCC+TGG | - | chr1.4:1543493-1543512 | MS.gene90728:CDS | 40.0% | |
| ACAATCAGGGAGGATACTTA+TGG | + | chr1.4:1545555-1545574 | None:intergenic | 40.0% | |
| ACTAGAGAAAGCCAATAGCT+TGG | + | chr1.4:1545911-1545930 | None:intergenic | 40.0% | |
| AGGAACTAATTTCGGACGAT+CGG | - | chr1.4:1545083-1545102 | MS.gene90728:intron | 40.0% | |
| AGGATTTGACAGGGCAAAAA+TGG | - | chr1.4:1546626-1546645 | MS.gene90728:CDS | 40.0% | |
| AGTTGCCCGTTTCATACAAA+AGG | - | chr1.4:1544925-1544944 | MS.gene90728:intron | 40.0% | |
| ATCAACAGATGAGACTCCAT+TGG | + | chr1.4:1546815-1546834 | None:intergenic | 40.0% | |
| ATGGACAGAAGGATTTGACA+GGG | - | chr1.4:1546617-1546636 | MS.gene90728:CDS | 40.0% | |
| ATGGAGTCTCATCTGTTGAT+TGG | - | chr1.4:1546815-1546834 | MS.gene90728:intron | 40.0% | |
| CAAGACTCAGTCCATAGTTT+AGG | + | chr1.4:1544721-1544740 | None:intergenic | 40.0% | |
| CAAGCAATGTGAACATGCTT+TGG | - | chr1.4:1545298-1545317 | MS.gene90728:intron | 40.0% | |
| CAATGAGTTTGGCTGAATCA+CGG | + | chr1.4:1544574-1544593 | None:intergenic | 40.0% | |
| CACAAGGTAAGAACAGTTAC+TGG | - | chr1.4:1546883-1546902 | MS.gene90728:CDS | 40.0% | |
| CAGAATCATTTCTTCGTGGA+AGG | - | chr1.4:1546039-1546058 | MS.gene90728:intron | 40.0% | |
| CGGTTAAAATTAGTTGGCGT+TGG | - | chr1.4:1546163-1546182 | MS.gene90728:intron | 40.0% | |
| CTGCTAAAAAACTGCGTTCA+TGG | - | chr1.4:1545392-1545411 | MS.gene90728:CDS | 40.0% | |
| CTTGATCTTTCACAACATGC+AGG | + | chr1.4:1544226-1544245 | None:intergenic | 40.0% | |
| GCAAAAATGGCTGTTGGATT+AGG | - | chr1.4:1544378-1544397 | MS.gene90728:intron | 40.0% | |
| GCTCCTAATGATGTAACAGT+AGG | + | chr1.4:1545335-1545354 | None:intergenic | 40.0% | |
| GCTGTCCATGTGTTTATCAA+TGG | - | chr1.4:1546098-1546117 | MS.gene90728:intron | 40.0% | |
| GGAACATACTTCAACCAAAC+AGG | + | chr1.4:1543899-1543918 | None:intergenic | 40.0% | |
| GGCAACATTTGGATTTGTGA+AGG | + | chr1.4:1545713-1545732 | None:intergenic | 40.0% | |
| GGTGCTTCTTGGATAATGAA+TGG | + | chr1.4:1543308-1543327 | None:intergenic | 40.0% | |
| GTCCATAGTTTAGGCTTGTA+TGG | + | chr1.4:1544712-1544731 | None:intergenic | 40.0% | |
| GTTATGGTTTCGTGAAGATG+AGG | - | chr1.4:1545681-1545700 | MS.gene90728:intron | 40.0% | |
| GTTGCCCGTTTCATACAAAA+GGG | - | chr1.4:1544926-1544945 | MS.gene90728:intron | 40.0% | |
| GTTTGGTTGAAGTATGTTCC+TGG | - | chr1.4:1543899-1543918 | MS.gene90728:CDS | 40.0% | |
| TAAGTATCCTCCCTGATTGT+AGG | - | chr1.4:1545555-1545574 | MS.gene90728:intron | 40.0% | |
| TACCACGGAGGAACTAATTT+CGG | - | chr1.4:1545075-1545094 | MS.gene90728:CDS | 40.0% | |
| TCAACAGATGAGACTCCATT+GGG | + | chr1.4:1546814-1546833 | None:intergenic | 40.0% | |
| TGAAAACCTGATGGCCAAAT+GGG | + | chr1.4:1544855-1544874 | None:intergenic | 40.0% | |
| TGAAGATGTATCTTCGCTAG+CGG | - | chr1.4:1545769-1545788 | MS.gene90728:intron | 40.0% | |
| TGCATAGAACTGAGAAAGCA+AGG | + | chr1.4:1545965-1545984 | None:intergenic | 40.0% | |
| TGGATCAATGGACAAAGCAT+AGG | - | chr1.4:1547048-1547067 | MS.gene90728:CDS | 40.0% | |
| TGGTCATGCATACTCAAACT+GGG | - | chr1.4:1544353-1544372 | MS.gene90728:intron | 40.0% | |
| TTCCACTCAGCACAAACATA+AGG | + | chr1.4:1543765-1543784 | None:intergenic | 40.0% | |
| TTCCAGAATAGTACATTGCC+AGG | + | chr1.4:1543514-1543533 | None:intergenic | 40.0% | |
| TTTGTGCTGAGTGGAACTTT+GGG | - | chr1.4:1543769-1543788 | MS.gene90728:CDS | 40.0% | |
| ! | AACTTTTAGGCTGCAATGCA+AGG | - | chr1.4:1544053-1544072 | MS.gene90728:intron | 40.0% |
| ! | ACAGGTCCAATTTTGCTTCA+TGG | - | chr1.4:1546586-1546605 | MS.gene90728:CDS | 40.0% |
| ! | ACCACCCTTTTGTATGAAAC+GGG | + | chr1.4:1544933-1544952 | None:intergenic | 40.0% |
| ! | CTAAACTATGGACTGAGTCT+TGG | - | chr1.4:1544719-1544738 | MS.gene90728:intron | 40.0% |
| ! | CTCCTTTTCCTATTCCCATT+TGG | - | chr1.4:1544838-1544857 | MS.gene90728:CDS | 40.0% |
| ! | GAAAAGCTGTTTCAGTCACA+AGG | - | chr1.4:1544110-1544129 | MS.gene90728:intron | 40.0% |
| ! | GCCATCAGGTTTTCAGAATT+TGG | - | chr1.4:1544860-1544879 | MS.gene90728:CDS | 40.0% |
| ! | TGGAGTCTCATCTGTTGATT+GGG | - | chr1.4:1546816-1546835 | MS.gene90728:intron | 40.0% |
| !! | ATGAATTTGGTGTCTCCCAA+TGG | - | chr1.4:1546796-1546815 | MS.gene90728:intron | 40.0% |
| !!! | GGTTACCTGGTTCTTTTTTC+TGG | - | chr1.4:1544977-1544996 | MS.gene90728:intron | 40.0% |
| AAAGGGGGAGGCTATGAATT+TGG | - | chr1.4:1546783-1546802 | MS.gene90728:intron | 45.0% | |
| AATCAGGCAAGATCACGAGA+AGG | + | chr1.4:1544465-1544484 | None:intergenic | 45.0% | |
| AATTCATAGCCTCCCCCTTT+AGG | + | chr1.4:1546783-1546802 | None:intergenic | 45.0% | |
| ACGACGCTGATACAGAAGTT+AGG | + | chr1.4:1546677-1546696 | None:intergenic | 45.0% | |
| AGCATTAGTGTGCATTCCTC+TGG | - | chr1.4:1546071-1546090 | MS.gene90728:intron | 45.0% | |
| AGGATACTTATGGACCAAGG+AGG | + | chr1.4:1545545-1545564 | None:intergenic | 45.0% | |
| AGGGCAAAAATGGTCATACC+AGG | - | chr1.4:1546636-1546655 | MS.gene90728:CDS | 45.0% | |
| ATTAGGTACAGGTGTCCCTT+GGG | - | chr1.4:1544395-1544414 | MS.gene90728:intron | 45.0% | |
| CAAAGGAGAATCCTCATCTC+TGG | - | chr1.4:1543280-1543299 | MS.gene90728:CDS | 45.0% | |
| CAGAGATGAGGATTCTCCTT+TGG | + | chr1.4:1543282-1543301 | None:intergenic | 45.0% | |
| CAGGCACATGTATTCTCTTC+AGG | - | chr1.4:1545437-1545456 | MS.gene90728:CDS | 45.0% | |
| CATGGACAGAAGGATTTGAC+AGG | - | chr1.4:1546616-1546635 | MS.gene90728:CDS | 45.0% | |
| CTCAAACTGGGCTGCAAAAA+TGG | - | chr1.4:1544365-1544384 | MS.gene90728:intron | 45.0% | |
| CTCCTGGCAATGTACTATTC+TGG | - | chr1.4:1543509-1543528 | MS.gene90728:CDS | 45.0% | |
| CTGAAAACCTGATGGCCAAA+TGG | + | chr1.4:1544856-1544875 | None:intergenic | 45.0% | |
| CTGAAGAGAATACATGTGCC+TGG | + | chr1.4:1545439-1545458 | None:intergenic | 45.0% | |
| CTGGTCATGCATACTCAAAC+TGG | - | chr1.4:1544352-1544371 | MS.gene90728:intron | 45.0% | |
| CTGTCAAATCCTTCTGTCCA+TGG | + | chr1.4:1546618-1546637 | None:intergenic | 45.0% | |
| CTTCCTTACACATCACCCAA+GGG | + | chr1.4:1544413-1544432 | None:intergenic | 45.0% | |
| GAAAGCAAAAGATGGAGGGT+TGG | - | chr1.4:1543444-1543463 | MS.gene90728:intron | 45.0% | |
| GAAATGTGTGTAGATGTGGG+AGG | - | chr1.4:1543411-1543430 | MS.gene90728:intron | 45.0% | |
| GACAAATGATAGTACCACGG+AGG | - | chr1.4:1545063-1545082 | MS.gene90728:CDS | 45.0% | |
| GACATGAGCAGTATGGGAAA+GGG | - | chr1.4:1547018-1547037 | MS.gene90728:CDS | 45.0% | |
| GACCTTATGTTTGTGCTGAG+TGG | - | chr1.4:1543760-1543779 | MS.gene90728:CDS | 45.0% | |
| GAGGAATGCACACTAATGCT+TGG | + | chr1.4:1546071-1546090 | None:intergenic | 45.0% | |
| GCACTTCTTAGTGTAGCTGT+TGG | - | chr1.4:1546429-1546448 | MS.gene90728:CDS | 45.0% | |
| GCATTGGACATGAGCAGTAT+GGG | - | chr1.4:1547012-1547031 | MS.gene90728:CDS | 45.0% | |
| GGCCAAATGGGAATAGGAAA+AGG | + | chr1.4:1544843-1544862 | None:intergenic | 45.0% | |
| GTATGGGAAAGGGTCAAGTA+TGG | - | chr1.4:1547028-1547047 | MS.gene90728:CDS | 45.0% | |
| GTGCATTGAAATGAGCCTGA+AGG | + | chr1.4:1546972-1546991 | None:intergenic | 45.0% | |
| GTTTGTGCTGAGTGGAACTT+TGG | - | chr1.4:1543768-1543787 | MS.gene90728:CDS | 45.0% | |
| TAGAGGGTAATCTACTGACC+TGG | + | chr1.4:1545876-1545895 | None:intergenic | 45.0% | |
| TCATGGAAGTCAGGAATCAC+AGG | - | chr1.4:1546568-1546587 | MS.gene90728:CDS | 45.0% | |
| TCTTCCTTACACATCACCCA+AGG | + | chr1.4:1544414-1544433 | None:intergenic | 45.0% | |
| TGGAGTTGAACCATTGGCAT+TGG | - | chr1.4:1546996-1547015 | MS.gene90728:intron | 45.0% | |
| TTTCGCCTGACGATAAGTTC+CGG | + | chr1.4:1547124-1547143 | None:intergenic | 45.0% | |
| ! | AAGCTGTTTCAGTCACAAGG+TGG | - | chr1.4:1544113-1544132 | MS.gene90728:intron | 45.0% |
| ! | ATGGCTGTTGGATTAGGTAC+AGG | - | chr1.4:1544384-1544403 | MS.gene90728:intron | 45.0% |
| ! | CCTATTTCCTTTTGCAGGCT+CGG | - | chr1.4:1546332-1546351 | MS.gene90728:intron | 45.0% |
| ! | GTTTGCTAGAAAAGCTGCAC+AGG | + | chr1.4:1545468-1545487 | None:intergenic | 45.0% |
| ! | TTGCTTCATGGTCTTGACCA+TGG | - | chr1.4:1546598-1546617 | MS.gene90728:CDS | 45.0% |
| !! | ACAAACAGGTTGGCCTAAAG+GGG | - | chr1.4:1546767-1546786 | MS.gene90728:intron | 45.0% |
| !! | ACCTTGTGCCATTTCAACTG+TGG | + | chr1.4:1546871-1546890 | None:intergenic | 45.0% |
| !! | CACAAACAGGTTGGCCTAAA+GGG | - | chr1.4:1546766-1546785 | MS.gene90728:intron | 45.0% |
| !! | TATACTTCAGGGGTGCTTCT+TGG | + | chr1.4:1543319-1543338 | None:intergenic | 45.0% |
| !! | TCTGTTCTGAAACTGATCCC+AGG | + | chr1.4:1543920-1543939 | None:intergenic | 45.0% |
| ACCTGGTGGAGTTGAACCAT+TGG | - | chr1.4:1546990-1547009 | MS.gene90728:intron | 50.0% | |
| ACTAATTTCGGACGATCGGC+TGG | - | chr1.4:1545087-1545106 | MS.gene90728:intron | 50.0% | |
| AGGTTTGCGTGCATCATACC+TGG | + | chr1.4:1546657-1546676 | None:intergenic | 50.0% | |
| CAGGCTCATTTCAATGCACC+TGG | - | chr1.4:1546973-1546992 | MS.gene90728:intron | 50.0% | |
| CATCTGTCCTACAATCAGGG+AGG | + | chr1.4:1545565-1545584 | None:intergenic | 50.0% | |
| CCGAGCCTGCAAAAGGAAAT+AGG | + | chr1.4:1546335-1546354 | None:intergenic | 50.0% | |
| CCTATTCCCATTTGGCCATC+AGG | - | chr1.4:1544846-1544865 | MS.gene90728:CDS | 50.0% | |
| CCTGATGGCCAAATGGGAAT+AGG | + | chr1.4:1544849-1544868 | None:intergenic | 50.0% | |
| CTAACTCACCACTGGATCTG+GGG | + | chr1.4:1544442-1544461 | None:intergenic | 50.0% | |
| CTATGCCGGAACTTATCGTC+AGG | - | chr1.4:1547116-1547135 | MS.gene90728:CDS | 50.0% | |
| CTCCAAGTGCTCTTCCTTGT+GGG | + | chr1.4:1544329-1544348 | None:intergenic | 50.0% | |
| CTGCTCATGTCCAATGCCAA+TGG | + | chr1.4:1547009-1547028 | None:intergenic | 50.0% | |
| GAGAATGAGTATGGCCCACA+AGG | - | chr1.4:1544312-1544331 | MS.gene90728:intron | 50.0% | |
| GATTAGGTACAGGTGTCCCT+TGG | - | chr1.4:1544394-1544413 | MS.gene90728:intron | 50.0% | |
| GCCACAGTTGAAATGGCACA+AGG | - | chr1.4:1546867-1546886 | MS.gene90728:CDS | 50.0% | |
| GCCCGTTTCATACAAAAGGG+TGG | - | chr1.4:1544929-1544948 | MS.gene90728:intron | 50.0% | |
| GCTAACTCACCACTGGATCT+GGG | + | chr1.4:1544443-1544462 | None:intergenic | 50.0% | |
| GCTCATTTCAATGCACCTGG+TGG | - | chr1.4:1546976-1546995 | MS.gene90728:intron | 50.0% | |
| GGACATGAGCAGTATGGGAA+AGG | - | chr1.4:1547017-1547036 | MS.gene90728:CDS | 50.0% | |
| GGGAGGATACTTATGGACCA+AGG | + | chr1.4:1545548-1545567 | None:intergenic | 50.0% | |
| GTCCGAAATTAGTTCCTCCG+TGG | + | chr1.4:1545080-1545099 | None:intergenic | 50.0% | |
| TGGGCTGCAAAAATGGCTGT+TGG | - | chr1.4:1544372-1544391 | MS.gene90728:intron | 50.0% | |
| TGTCCCTTGGGTGATGTGTA+AGG | - | chr1.4:1544407-1544426 | MS.gene90728:intron | 50.0% | |
| TTCCAGCACGTAGGTCGATA+GGG | + | chr1.4:1546398-1546417 | None:intergenic | 50.0% | |
| ! | CTATGGACTGAGTCTTGGAG+TGG | - | chr1.4:1544724-1544743 | MS.gene90728:intron | 50.0% |
| ! | CTTTTGCAGGCTCGGCTTTT+GGG | - | chr1.4:1546340-1546359 | MS.gene90728:intron | 50.0% |
| ! | GGCATTGGACATGAGCAGTA+TGG | - | chr1.4:1547011-1547030 | MS.gene90728:intron | 50.0% |
| ! | TGGTCTTGACCATGGACAGA+AGG | - | chr1.4:1546606-1546625 | MS.gene90728:CDS | 50.0% |
| !! | CAAACAGGTTGGCCTAAAGG+GGG | - | chr1.4:1546768-1546787 | MS.gene90728:intron | 50.0% |
| !! | GCACAAACAGGTTGGCCTAA+AGG | - | chr1.4:1546765-1546784 | MS.gene90728:intron | 50.0% |
| !! | TGTGCCATTTCAACTGTGGC+TGG | + | chr1.4:1546867-1546886 | None:intergenic | 50.0% |
| AATTTCGGACGATCGGCTGG+AGG | - | chr1.4:1545090-1545109 | MS.gene90728:intron | 55.0% | |
| AGATCCTGAACTGGTCGCTG+GGG | + | chr1.4:1544896-1544915 | None:intergenic | 55.0% | |
| AGATGATGCCCCAGATCCAG+TGG | - | chr1.4:1544431-1544450 | MS.gene90728:intron | 55.0% | |
| CACATGGACAGCATCACCAG+AGG | + | chr1.4:1546090-1546109 | None:intergenic | 55.0% | |
| CCAAAAGCCGAGCCTGCAAA+AGG | + | chr1.4:1546342-1546361 | None:intergenic | 55.0% | |
| CGAGAAGGCTAACTCACCAC+TGG | + | chr1.4:1544450-1544469 | None:intergenic | 55.0% | |
| CGTCAGGCGAAATGCCAAGT+TGG | - | chr1.4:1547132-1547151 | MS.gene90728:CDS | 55.0% | |
| GAGATCCTGAACTGGTCGCT+GGG | + | chr1.4:1544897-1544916 | None:intergenic | 55.0% | |
| GCCAATGGTTCAACTCCACC+AGG | + | chr1.4:1546994-1547013 | None:intergenic | 55.0% | |
| GCTCCAAGTGCTCTTCCTTG+TGG | + | chr1.4:1544330-1544349 | None:intergenic | 55.0% | |
| GGACTGAGTCTTGGAGTGGT+TGG | - | chr1.4:1544728-1544747 | MS.gene90728:intron | 55.0% | |
| GGCTAACTCACCACTGGATC+TGG | + | chr1.4:1544444-1544463 | None:intergenic | 55.0% | |
| GTTCCAGCACGTAGGTCGAT+AGG | + | chr1.4:1546399-1546418 | None:intergenic | 55.0% | |
| ! | CCTTTTGCAGGCTCGGCTTT+TGG | - | chr1.4:1546339-1546358 | MS.gene90728:intron | 55.0% |
| ! | GGCACTATGACTTGCCTCCT+TGG | - | chr1.4:1545528-1545547 | MS.gene90728:intron | 55.0% |
| !! | GGAAGAGCACTTGGAGCTTC+TGG | - | chr1.4:1544333-1544352 | MS.gene90728:intron | 55.0% |
| !!! | AGGCTCGGCTTTTGGGACAA+GGG | - | chr1.4:1546347-1546366 | MS.gene90728:intron | 55.0% |
| CGAGATCCTGAACTGGTCGC+TGG | + | chr1.4:1544898-1544917 | None:intergenic | 60.0% | |
| GATCCTGAACTGGTCGCTGG+GGG | + | chr1.4:1544895-1544914 | None:intergenic | 60.0% | |
| GCGAACGCGAGATCCTGAAC+TGG | + | chr1.4:1544905-1544924 | None:intergenic | 60.0% | |
| !! | ACAGGTTGGCCTAAAGGGGG+AGG | - | chr1.4:1546771-1546790 | MS.gene90728:intron | 60.0% |
| !! | GGCCCACAAGGAAGAGCACT+TGG | - | chr1.4:1544324-1544343 | MS.gene90728:intron | 60.0% |
| !!! | CAGGCTCGGCTTTTGGGACA+AGG | - | chr1.4:1546346-1546365 | MS.gene90728:intron | 60.0% |
| GAACCCCCAGCGACCAGTTC+AGG | - | chr1.4:1544889-1544908 | MS.gene90728:intron | 65.0% | |
| GGCCCTATCGACCTACGTGC+TGG | - | chr1.4:1546393-1546412 | MS.gene90728:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1543160 | 1547185 | 1543160 | ID=MS.gene90728 |
| chr1.4 | mRNA | 1543160 | 1547185 | 1543160 | ID=MS.gene90728.t1;Parent=MS.gene90728 |
| chr1.4 | exon | 1547012 | 1547185 | 1547012 | ID=MS.gene90728.t1.exon1;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1547012 | 1547185 | 1547012 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1546826 | 1546921 | 1546826 | ID=MS.gene90728.t1.exon2;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1546826 | 1546921 | 1546826 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1546555 | 1546667 | 1546555 | ID=MS.gene90728.t1.exon3;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1546555 | 1546667 | 1546555 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1546390 | 1546456 | 1546390 | ID=MS.gene90728.t1.exon4;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1546390 | 1546456 | 1546390 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1546191 | 1546283 | 1546191 | ID=MS.gene90728.t1.exon5;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1546191 | 1546283 | 1546191 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1545893 | 1546036 | 1545893 | ID=MS.gene90728.t1.exon6;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1545893 | 1546036 | 1545893 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1545596 | 1545684 | 1545596 | ID=MS.gene90728.t1.exon7;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1545596 | 1545684 | 1545596 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1545372 | 1545477 | 1545372 | ID=MS.gene90728.t1.exon8;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1545372 | 1545477 | 1545372 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1545183 | 1545270 | 1545183 | ID=MS.gene90728.t1.exon9;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1545183 | 1545270 | 1545183 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1544981 | 1545099 | 1544981 | ID=MS.gene90728.t1.exon10;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1544981 | 1545099 | 1544981 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1544744 | 1544905 | 1544744 | ID=MS.gene90728.t1.exon11;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1544744 | 1544905 | 1544744 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1544469 | 1544647 | 1544469 | ID=MS.gene90728.t1.exon12;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1544469 | 1544647 | 1544469 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1544208 | 1544323 | 1544208 | ID=MS.gene90728.t1.exon13;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1544208 | 1544323 | 1544208 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1543887 | 1543996 | 1543887 | ID=MS.gene90728.t1.exon14;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1543887 | 1543996 | 1543887 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1543688 | 1543798 | 1543688 | ID=MS.gene90728.t1.exon15;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1543688 | 1543798 | 1543688 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1543457 | 1543570 | 1543457 | ID=MS.gene90728.t1.exon16;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1543457 | 1543570 | 1543457 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| chr1.4 | exon | 1543160 | 1543369 | 1543160 | ID=MS.gene90728.t1.exon17;Parent=MS.gene90728.t1 |
| chr1.4 | CDS | 1543160 | 1543369 | 1543160 | ID=cds.MS.gene90728.t1;Parent=MS.gene90728.t1 |
| Gene Sequence |
| Protein sequence |
