Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90792.t1 | XP_003592799.2 | 93.8 | 402 | 24 | 1 | 1 | 401 | 1 | 402 | 6.00E-202 | 713.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90792.t1 | Q9MAT6 | 59.7 | 380 | 115 | 10 | 1 | 362 | 1 | 360 | 1.6e-102 | 374.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90792.t1 | G7IF34 | 93.8 | 402 | 24 | 1 | 1 | 401 | 1 | 402 | 4.3e-202 | 713.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90792.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene90792 | 0.841099 | 5.83E-58 | -1.69E-46 |
| MS.gene057011 | MS.gene90792 | 0.822272 | 2.59E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene90792 | 0.804811 | 1.81E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene90792 | 0.804109 | 2.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90792.t1 | MTR_1g116180 | 97.015 | 402 | 11 | 1 | 1 | 401 | 1 | 402 | 0.0 | 808 |
| MS.gene90792.t1 | MTR_1g116180 | 98.071 | 311 | 5 | 1 | 1 | 310 | 1 | 311 | 0.0 | 633 |
| MS.gene90792.t1 | MTR_7g005970 | 61.598 | 388 | 131 | 6 | 1 | 381 | 1 | 377 | 1.41e-157 | 451 |
| MS.gene90792.t1 | MTR_3g114920 | 45.283 | 318 | 155 | 5 | 24 | 338 | 20 | 321 | 8.15e-84 | 259 |
| MS.gene90792.t1 | MTR_3g009890 | 44.690 | 226 | 104 | 5 | 24 | 247 | 29 | 235 | 4.88e-52 | 175 |
| MS.gene90792.t1 | MTR_5g080030 | 22.662 | 278 | 181 | 8 | 66 | 320 | 70 | 336 | 4.17e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90792.t1 | AT1G04880 | 60.000 | 380 | 114 | 11 | 1 | 362 | 1 | 360 | 1.28e-134 | 393 |
| MS.gene90792.t1 | AT1G76110 | 44.643 | 336 | 162 | 8 | 2 | 334 | 12 | 326 | 8.98e-85 | 262 |
| MS.gene90792.t1 | AT3G13350 | 45.545 | 303 | 133 | 4 | 29 | 330 | 34 | 305 | 1.70e-82 | 255 |
| MS.gene90792.t1 | AT1G55650 | 36.562 | 320 | 154 | 7 | 12 | 330 | 11 | 282 | 1.70e-60 | 199 |
Find 95 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCACTTCTGTTTGGTTT+TGG | 0.220656 | 1.4:+88159189 | None:intergenic |
| ATTGCAGGATTCCTGTTATT+GGG | 0.246287 | 1.4:-88162026 | MS.gene90792:intron |
| TATTGCAGGATTCCTGTTAT+TGG | 0.282044 | 1.4:-88162027 | MS.gene90792:intron |
| TGTGGATTCATTGCCTGTTA+TGG | 0.326537 | 1.4:-88158492 | MS.gene90792:CDS |
| GAAGCATTTGTAGCCGTTGA+TGG | 0.327945 | 1.4:+88161523 | None:intergenic |
| AATAATAGATTTGTTCATAA+TGG | 0.330253 | 1.4:+88161464 | None:intergenic |
| GTACCTCTCTTTGTCCTTCA+CGG | 0.336959 | 1.4:+88158715 | None:intergenic |
| GTATGTGAAAACTGCATCTT+TGG | 0.346993 | 1.4:+88161287 | None:intergenic |
| GTGGATTCATTGCCTGTTAT+GGG | 0.359014 | 1.4:-88158491 | MS.gene90792:CDS |
| CGGCAGGATCTCAGGTTGTC+GGG | 0.362545 | 1.4:-88159425 | MS.gene90792:CDS |
| AGATCATTAAAGATAGAAAA+TGG | 0.378478 | 1.4:-88161573 | MS.gene90792:CDS |
| GCTCAAAGCTGTCTCTTTCA+TGG | 0.381404 | 1.4:+88162338 | None:intergenic |
| GCATTCAACATGTCAGTATC+TGG | 0.384305 | 1.4:+88158605 | None:intergenic |
| TGCATCTTTGGAGCAGGAGC+TGG | 0.387029 | 1.4:+88161299 | None:intergenic |
| CAGGTTGTCGGGGTCATTGA+TGG | 0.395002 | 1.4:-88159414 | MS.gene90792:CDS |
| TATCTAGTTACTGTCACAAT+TGG | 0.419081 | 1.4:-88159375 | MS.gene90792:CDS |
| TCAGCACCAACTCCCATAAC+AGG | 0.424034 | 1.4:+88158479 | None:intergenic |
| AAATTGTATCCACTTCTGTT+TGG | 0.426908 | 1.4:+88159183 | None:intergenic |
| CTCAGCAATGGGATCATCTT+CGG | 0.429472 | 1.4:-88159445 | MS.gene90792:intron |
| TCATTGCCTGTTATGGGAGT+TGG | 0.435413 | 1.4:-88158485 | MS.gene90792:CDS |
| ATCATCTTCGGCAGGATCTC+AGG | 0.435568 | 1.4:-88159433 | MS.gene90792:CDS |
| ATTGATGGGAAATTTGATAG+TGG | 0.443834 | 1.4:-88159399 | MS.gene90792:CDS |
| AGAGAGGTACATAACAGAAA+TGG | 0.452384 | 1.4:-88158702 | MS.gene90792:CDS |
| TCGGCAGGATCTCAGGTTGT+CGG | 0.453538 | 1.4:-88159426 | MS.gene90792:CDS |
| TGTTGTTAGCAGGAACACTA+TGG | 0.456419 | 1.4:+88159289 | None:intergenic |
| GCTGTCTCTTTCATGGGTAA+TGG | 0.461532 | 1.4:+88162345 | None:intergenic |
| CAAGCTCTTCATACTTAGCT+TGG | 0.463066 | 1.4:-88162262 | MS.gene90792:CDS |
| GAACATACCGGAAGTTGTAT+TGG | 0.464656 | 1.4:+88161423 | None:intergenic |
| TGGTGGGATGCTGGCAGCAC+AGG | 0.472613 | 1.4:+88159309 | None:intergenic |
| AACTGGACCAATACAACTTC+CGG | 0.475197 | 1.4:-88161430 | MS.gene90792:intron |
| AGTTACTGTCACAATTGGTT+CGG | 0.475294 | 1.4:-88159370 | MS.gene90792:CDS |
| GGAAGGACCGAGAGATTAGT+AGG | 0.477594 | 1.4:-88159116 | MS.gene90792:CDS |
| TTCACCTATGGCAACATATG+AGG | 0.483062 | 1.4:-88162301 | MS.gene90792:CDS |
| AACATGTCAGTATCTGGTTC+AGG | 0.486501 | 1.4:+88158611 | None:intergenic |
| GCGGTCACGTTGTTGTTAGC+AGG | 0.489436 | 1.4:+88159279 | None:intergenic |
| CAAGCTAAGTATGAAGAGCT+TGG | 0.497014 | 1.4:+88162263 | None:intergenic |
| CTTTGGAGCAGGAGCTGGGA+TGG | 0.499860 | 1.4:+88161304 | None:intergenic |
| GGAACACTATGGTGGGATGC+TGG | 0.501068 | 1.4:+88159300 | None:intergenic |
| TTTAACTGTTGAAAGACAGC+TGG | 0.504737 | 1.4:+88161248 | None:intergenic |
| CCAGGGAGCCTACATGAACT+TGG | 0.508162 | 1.4:+88162215 | None:intergenic |
| TGATGACTATGAAGATGATA+AGG | 0.508495 | 1.4:-88158534 | MS.gene90792:CDS |
| GTGTCCATCGTCGCCGACGC+AGG | 0.509894 | 1.4:-88159248 | MS.gene90792:CDS |
| TTTGTTGAAGTGACTTCTCG+TGG | 0.510774 | 1.4:-88161976 | MS.gene90792:CDS |
| GGAGAAGCTCCACACTCTCA+TGG | 0.512213 | 1.4:-88162241 | MS.gene90792:CDS |
| AAGCTAAGTATGAAGAGCTT+GGG | 0.516105 | 1.4:+88162264 | None:intergenic |
| CGGTCCTTCCCTCGGTGAAG+AGG | 0.519858 | 1.4:+88159129 | None:intergenic |
| GCATCTTTGGAGCAGGAGCT+GGG | 0.522935 | 1.4:+88161300 | None:intergenic |
| CGAGAGATTAGTAGGACCAT+TGG | 0.525975 | 1.4:-88159108 | MS.gene90792:CDS |
| TGGTGAATATCCTTCACCTA+TGG | 0.528306 | 1.4:-88162313 | MS.gene90792:CDS |
| TTGCAGGATTCCTGTTATTG+GGG | 0.528895 | 1.4:-88162025 | MS.gene90792:intron |
| TAATCTCTCGGTCCTTCCCT+CGG | 0.534837 | 1.4:+88159121 | None:intergenic |
| GAAAACTGCATCTTTGGAGC+AGG | 0.538241 | 1.4:+88161293 | None:intergenic |
| CTCAAAGCTGTCTCTTTCAT+GGG | 0.539064 | 1.4:+88162339 | None:intergenic |
| TCTTCCTGCGTCGGCGACGA+TGG | 0.540297 | 1.4:+88159244 | None:intergenic |
| TTGAAGTGACTTCTCGTGGA+GGG | 0.541093 | 1.4:-88161972 | MS.gene90792:CDS |
| CCGTCTGAACTACTCTGCTC+CGG | 0.545473 | 1.4:+88158560 | None:intergenic |
| GATCATTCTTCAACTTCTCA+CGG | 0.547465 | 1.4:+88158672 | None:intergenic |
| CAATGGTCCTACTAATCTCT+CGG | 0.547885 | 1.4:+88159109 | None:intergenic |
| GTTAATTCTGCTCCGCCTGA+AGG | 0.550930 | 1.4:-88161224 | MS.gene90792:intron |
| GTAGGACCATTGGTGAACTC+TGG | 0.551646 | 1.4:-88159098 | MS.gene90792:CDS |
| CACCCAAAACCAAACAGAAG+TGG | 0.557660 | 1.4:-88159192 | MS.gene90792:CDS |
| AGGTTGTCGGGGTCATTGAT+GGG | 0.564891 | 1.4:-88159413 | MS.gene90792:CDS |
| TCATATGTTGCCATAGGTGA+AGG | 0.568033 | 1.4:+88162303 | None:intergenic |
| TCTCTGATTTCTTCCTGCGT+CGG | 0.568830 | 1.4:+88159235 | None:intergenic |
| GGCAGACTCTCTTCAAACTC+CGG | 0.569431 | 1.4:-88158579 | MS.gene90792:CDS |
| GAGAAGCTCCACACTCTCAT+GGG | 0.571795 | 1.4:-88162240 | MS.gene90792:CDS |
| TCTTTGCAGAACAGCATCCA+AGG | 0.571889 | 1.4:-88159158 | MS.gene90792:CDS |
| GCAATGGGATCATCTTCGGC+AGG | 0.580770 | 1.4:-88159441 | MS.gene90792:CDS |
| TCAGGAAATCGCTGTTGAAG+TGG | 0.581487 | 1.4:+88158629 | None:intergenic |
| AAAGAGACAGCTTTGAGCCA+TGG | 0.588397 | 1.4:-88162333 | MS.gene90792:CDS |
| GGCTAAAACCTCTTCACCGA+GGG | 0.597780 | 1.4:-88159137 | MS.gene90792:CDS |
| TGTTAGCAGGAACACTATGG+TGG | 0.605828 | 1.4:+88159292 | None:intergenic |
| AAGACAGCTGGTTGAACTTG+TGG | 0.608568 | 1.4:+88161260 | None:intergenic |
| CCGGAGCAGAGTAGTTCAGA+CGG | 0.612929 | 1.4:-88158560 | MS.gene90792:CDS |
| CTATGAAGATGATAAGGCGA+AGG | 0.615408 | 1.4:-88158528 | MS.gene90792:CDS |
| TTATCAAGATAAAGCCGTGA+AGG | 0.616173 | 1.4:-88158729 | MS.gene90792:CDS |
| CTTGTTCCAGAGTTCACCAA+TGG | 0.619707 | 1.4:+88159092 | None:intergenic |
| ACCTCCTCATATGTTGCCAT+AGG | 0.625420 | 1.4:+88162297 | None:intergenic |
| AAAACCTCTTCACCGAGGGA+AGG | 0.626858 | 1.4:-88159133 | MS.gene90792:CDS |
| ACCTATGGCAACATATGAGG+AGG | 0.630539 | 1.4:-88162298 | MS.gene90792:CDS |
| AACAACGTGACCGCCTCTGT+CGG | 0.631474 | 1.4:-88159270 | MS.gene90792:CDS |
| GTTGAAGTGACTTCTCGTGG+AGG | 0.634997 | 1.4:-88161973 | MS.gene90792:CDS |
| GGCAGGATCTCAGGTTGTCG+GGG | 0.638448 | 1.4:-88159424 | MS.gene90792:CDS |
| TGCAGGATTCCTGTTATTGG+GGG | 0.639336 | 1.4:-88162024 | MS.gene90792:intron |
| AAGCCGTGAAGGACAAAGAG+AGG | 0.641251 | 1.4:-88158718 | MS.gene90792:CDS |
| ATTGGTTCGGAGAAACTCAA+AGG | 0.644223 | 1.4:-88159357 | MS.gene90792:CDS |
| GCGACGATGGACACCGACAG+AGG | 0.659779 | 1.4:+88159257 | None:intergenic |
| TACTGACATGTTGAATGCTG+AGG | 0.661079 | 1.4:-88158600 | MS.gene90792:CDS |
| GAGAAGTCACTTCAACAAAG+AGG | 0.662036 | 1.4:+88161980 | None:intergenic |
| ACTTGGTGCCCATGAGAGTG+TGG | 0.664789 | 1.4:+88162232 | None:intergenic |
| ACGATGGACACCGACAGAGG+CGG | 0.677611 | 1.4:+88159260 | None:intergenic |
| GCAAAGCAAAGACCTTCAGG+CGG | 0.704080 | 1.4:+88161212 | None:intergenic |
| TAGGTGAAGGATATTCACCA+TGG | 0.732815 | 1.4:+88162316 | None:intergenic |
| AGGCTAAAACCTCTTCACCG+AGG | 0.737163 | 1.4:-88159138 | MS.gene90792:CDS |
| GTTAGCAGGAACACTATGGT+GGG | 0.739497 | 1.4:+88159293 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACATACAAAAGATT+AGG | + | chr1.4:88161293-88161312 | None:intergenic | 15.0% |
| !! | ATAAACAATACTAGTTATTA+TGG | + | chr1.4:88161371-88161390 | None:intergenic | 15.0% |
| !!! | AATAATAGATTTGTTCATAA+TGG | + | chr1.4:88159386-88159405 | None:intergenic | 15.0% |
| !!! | GATTATAATTTCAATTTTGT+TGG | - | chr1.4:88158916-88158935 | MS.gene90792:intron | 15.0% |
| !!! | TTAGTAGTTAATCTTATTTT+GGG | + | chr1.4:88159670-88159689 | None:intergenic | 15.0% |
| !!! | TTTACTTTTATTTTAAGATG+TGG | - | chr1.4:88158689-88158708 | MS.gene90792:CDS | 15.0% |
| !!! | TTTGTTTTTGAGAATATTTT+AGG | - | chr1.4:88159717-88159736 | MS.gene90792:intron | 15.0% |
| !! | AGATCATTAAAGATAGAAAA+TGG | - | chr1.4:88159274-88159293 | MS.gene90792:CDS | 20.0% |
| !! | ATAAATTGGAAATTTCACTA+TGG | - | chr1.4:88159496-88159515 | MS.gene90792:intron | 20.0% |
| !! | ATTATGAGCTTACATTTAAT+GGG | - | chr1.4:88160516-88160535 | MS.gene90792:intron | 20.0% |
| !! | CAATCCTATATTAAGTTTAA+AGG | + | chr1.4:88161151-88161170 | None:intergenic | 20.0% |
| !! | TATGTTTAAATTGATGGAAA+GGG | - | chr1.4:88159741-88159760 | MS.gene90792:intron | 20.0% |
| !! | TATTATGAGCTTACATTTAA+TGG | - | chr1.4:88160515-88160534 | MS.gene90792:intron | 20.0% |
| !! | TCAATTCTCAAATAATGAAA+TGG | - | chr1.4:88160124-88160143 | MS.gene90792:intron | 20.0% |
| !! | TCATTATTTGAGAATTGAAA+TGG | + | chr1.4:88160122-88160141 | None:intergenic | 20.0% |
| !! | TTAGGTTATGTTTAAATTGA+TGG | - | chr1.4:88159735-88159754 | MS.gene90792:intron | 20.0% |
| !! | TTATGTTTAAATTGATGGAA+AGG | - | chr1.4:88159740-88159759 | MS.gene90792:intron | 20.0% |
| !! | TTCCAATTTATACATTAGAA+GGG | + | chr1.4:88159487-88159506 | None:intergenic | 20.0% |
| !! | TTGCAATTACAAAAAACATT+TGG | - | chr1.4:88158792-88158811 | MS.gene90792:intron | 20.0% |
| !! | TTTCCAATTTATACATTAGA+AGG | + | chr1.4:88159488-88159507 | None:intergenic | 20.0% |
| !!! | ATTCTTTTGAATCATAACTT+TGG | - | chr1.4:88159192-88159211 | MS.gene90792:CDS | 20.0% |
| !!! | GTTAGTAGTTAATCTTATTT+TGG | + | chr1.4:88159671-88159690 | None:intergenic | 20.0% |
| !!! | TAGTTTTCAATCTAGATATA+TGG | - | chr1.4:88160248-88160267 | MS.gene90792:intron | 20.0% |
| ! | AAACAATCAAACAATGGAAT+AGG | - | chr1.4:88160165-88160184 | MS.gene90792:intron | 25.0% |
| ! | AAATAGAAAGAATGGTTAAC+AGG | + | chr1.4:88161259-88161278 | None:intergenic | 25.0% |
| ! | AACAATCAAACAATGGAATA+GGG | - | chr1.4:88160166-88160185 | MS.gene90792:intron | 25.0% |
| ! | AATAGAAAGAATGGTTAACA+GGG | + | chr1.4:88161258-88161277 | None:intergenic | 25.0% |
| ! | AATTCGTAGTTTATAAATCC+AGG | + | chr1.4:88158653-88158672 | None:intergenic | 25.0% |
| ! | ACATTTATCACTAAATCTCT+CGG | + | chr1.4:88161124-88161143 | None:intergenic | 25.0% |
| ! | ATAACAGTAAGAGAAGTTAT+AGG | + | chr1.4:88161343-88161362 | None:intergenic | 25.0% |
| ! | ATGTTTAAATTGATGGAAAG+GGG | - | chr1.4:88159742-88159761 | MS.gene90792:intron | 25.0% |
| ! | ATTCGTAGTTTATAAATCCA+GGG | + | chr1.4:88158652-88158671 | None:intergenic | 25.0% |
| ! | ATTGTTTGATTGTTTCATTG+AGG | + | chr1.4:88160160-88160179 | None:intergenic | 25.0% |
| ! | CTATTTAACGATTAGAGAAA+TGG | + | chr1.4:88160231-88160250 | None:intergenic | 25.0% |
| ! | TAAGTAATCTCTAATCTATC+TGG | - | chr1.4:88161918-88161937 | MS.gene90792:intron | 25.0% |
| ! | TAATATAGTATCTTTCTCCT+AGG | - | chr1.4:88160288-88160307 | MS.gene90792:intron | 25.0% |
| ! | TATTTGAGAATTGAAATGGT+AGG | + | chr1.4:88160118-88160137 | None:intergenic | 25.0% |
| ! | TCAAATTTCACTACTCTATA+GGG | + | chr1.4:88159972-88159991 | None:intergenic | 25.0% |
| ! | TCAATGAAACAATCAAACAA+TGG | - | chr1.4:88160159-88160178 | MS.gene90792:intron | 25.0% |
| ! | TCCAATTTATACATTAGAAG+GGG | + | chr1.4:88159486-88159505 | None:intergenic | 25.0% |
| ! | TCCACCTTTAAACTTAATAT+AGG | - | chr1.4:88161144-88161163 | MS.gene90792:intron | 25.0% |
| ! | TCCTATATTAAGTTTAAAGG+TGG | + | chr1.4:88161148-88161167 | None:intergenic | 25.0% |
| ! | TCTTGATAAACCTTAAATGT+TGG | + | chr1.4:88162107-88162126 | None:intergenic | 25.0% |
| ! | TGCAAAGTTATACAAGTAAA+TGG | + | chr1.4:88158777-88158796 | None:intergenic | 25.0% |
| ! | TTCAAATTTCACTACTCTAT+AGG | + | chr1.4:88159973-88159992 | None:intergenic | 25.0% |
| !! | AAAGTACTAGAGTGAAAATT+GGG | - | chr1.4:88160970-88160989 | MS.gene90792:intron | 25.0% |
| !! | ACTGATAATGTCCAAAATAT+AGG | - | chr1.4:88158986-88159005 | MS.gene90792:intron | 25.0% |
| !! | AGGTAAGTCAATTTTATCAA+TGG | + | chr1.4:88160098-88160117 | None:intergenic | 25.0% |
| !! | AGTTTTCAATTTTCCATCAA+CGG | - | chr1.4:88159311-88159330 | MS.gene90792:CDS | 25.0% |
| !! | ATGATTTTCCATGACTTAAT+CGG | - | chr1.4:88160312-88160331 | MS.gene90792:intron | 25.0% |
| !! | GTTAACCATTCTTTCTATTT+TGG | - | chr1.4:88161259-88161278 | MS.gene90792:CDS | 25.0% |
| !! | TAAGTCAATTTTATCAATGG+AGG | + | chr1.4:88160095-88160114 | None:intergenic | 25.0% |
| !! | TGATGGTCTTTTAAATCTAT+TGG | - | chr1.4:88160349-88160368 | MS.gene90792:intron | 25.0% |
| !! | TGCTATTTAGTACAAAATAG+CGG | - | chr1.4:88160016-88160035 | MS.gene90792:intron | 25.0% |
| !! | TGTAAGATTTGTGCTATTAT+AGG | + | chr1.4:88160879-88160898 | None:intergenic | 25.0% |
| !! | TTAACACATCTTTTATGAGT+TGG | - | chr1.4:88161812-88161831 | MS.gene90792:intron | 25.0% |
| !! | TTCAATTTCCTTTTTCTTAG+TGG | + | chr1.4:88159693-88159712 | None:intergenic | 25.0% |
| !!! | AAAAGTACTAGAGTGAAAAT+TGG | - | chr1.4:88160969-88160988 | MS.gene90792:intron | 25.0% |
| !!! | AACATTTGGAATTTTATTGC+AGG | - | chr1.4:88158806-88158825 | MS.gene90792:intron | 25.0% |
| !!! | AAGGAAGTTTTGTTTTCATT+TGG | + | chr1.4:88160767-88160786 | None:intergenic | 25.0% |
| !!! | ACATTTTAAGTTTAGTATCG+TGG | - | chr1.4:88160896-88160915 | MS.gene90792:intron | 25.0% |
| !!! | ATTCTTTCTATTTTGGAAGT+GGG | - | chr1.4:88161266-88161285 | MS.gene90792:CDS | 25.0% |
| !!! | CTCTAATTTTTAAAGCTTCT+GGG | + | chr1.4:88161960-88161979 | None:intergenic | 25.0% |
| !!! | GTCCTTTTGATGATAAAATA+AGG | + | chr1.4:88160470-88160489 | None:intergenic | 25.0% |
| !!! | TAGGTAAATGTTAGTTTTCA+AGG | - | chr1.4:88160628-88160647 | MS.gene90792:intron | 25.0% |
| !!! | TCTAATTTTTAAAGCTTCTG+GGG | + | chr1.4:88161959-88161978 | None:intergenic | 25.0% |
| !!! | TCTCTAATTTTTAAAGCTTC+TGG | + | chr1.4:88161961-88161980 | None:intergenic | 25.0% |
| !!! | TGCCTTATTTTATCATCAAA+AGG | - | chr1.4:88160465-88160484 | MS.gene90792:intron | 25.0% |
| AAAGGATATTCCAATAGTCA+GGG | - | chr1.4:88161074-88161093 | MS.gene90792:intron | 30.0% | |
| AAATTAGAGAATGATAGCTC+AGG | - | chr1.4:88161971-88161990 | MS.gene90792:CDS | 30.0% | |
| AAATTGTATCCACTTCTGTT+TGG | + | chr1.4:88161667-88161686 | None:intergenic | 30.0% | |
| AAGCTCAGATATGCATTATT+TGG | - | chr1.4:88162040-88162059 | MS.gene90792:intron | 30.0% | |
| AAGTACTAGAGTGAAAATTG+GGG | - | chr1.4:88160971-88160990 | MS.gene90792:intron | 30.0% | |
| AATTAGAGAATGATAGCTCA+GGG | - | chr1.4:88161972-88161991 | MS.gene90792:CDS | 30.0% | |
| ACGAATTAGATATTGTGACT+TGG | - | chr1.4:88158666-88158685 | MS.gene90792:CDS | 30.0% | |
| ACTACTAACCACTAAGAAAA+AGG | - | chr1.4:88159682-88159701 | MS.gene90792:intron | 30.0% | |
| ATTGATGGGAAATTTGATAG+TGG | - | chr1.4:88161448-88161467 | MS.gene90792:CDS | 30.0% | |
| CAATAGTTCTTAGACCAAAT+AGG | + | chr1.4:88161890-88161909 | None:intergenic | 30.0% | |
| CACTTCCAAAATAGAAAGAA+TGG | + | chr1.4:88161267-88161286 | None:intergenic | 30.0% | |
| CATTAAGATGAATGAGTTGT+CGG | - | chr1.4:88160927-88160946 | MS.gene90792:intron | 30.0% | |
| CTACATATTCACACAATGTT+TGG | + | chr1.4:88158964-88158983 | None:intergenic | 30.0% | |
| GGTTAAAAACTATAGAGATG+TGG | + | chr1.4:88159839-88159858 | None:intergenic | 30.0% | |
| GTATAGGGTTTGATATATGT+TGG | - | chr1.4:88161216-88161235 | MS.gene90792:intron | 30.0% | |
| TAAAGGATATTCCAATAGTC+AGG | - | chr1.4:88161073-88161092 | MS.gene90792:intron | 30.0% | |
| TAATTAACAACAGTAGGGTA+GGG | + | chr1.4:88159928-88159947 | None:intergenic | 30.0% | |
| TATCTAGTTACTGTCACAAT+TGG | - | chr1.4:88161472-88161491 | MS.gene90792:CDS | 30.0% | |
| TGATGACTATGAAGATGATA+AGG | - | chr1.4:88162313-88162332 | MS.gene90792:CDS | 30.0% | |
| TGTATATTCCGATTAAGTCA+TGG | + | chr1.4:88160323-88160342 | None:intergenic | 30.0% | |
| TTAGAGAAATGGAATCAGAA+AGG | + | chr1.4:88160220-88160239 | None:intergenic | 30.0% | |
| TTGTTAATTAGTGGCTACAT+CGG | - | chr1.4:88159938-88159957 | MS.gene90792:intron | 30.0% | |
| ! | ATTTTGTTGGTATGAATGCA+TGG | - | chr1.4:88158929-88158948 | MS.gene90792:intron | 30.0% |
| ! | CGGAATATACATGATTTTGA+TGG | - | chr1.4:88160332-88160351 | MS.gene90792:intron | 30.0% |
| ! | CTCTATAGTTTTTAACCTGT+CGG | - | chr1.4:88159842-88159861 | MS.gene90792:intron | 30.0% |
| ! | TCTATAGTTTTTAACCTGTC+GGG | - | chr1.4:88159843-88159862 | MS.gene90792:intron | 30.0% |
| ! | TTAAGTTGCACCAACATTTA+AGG | - | chr1.4:88162094-88162113 | MS.gene90792:intron | 30.0% |
| ! | TTGTTTGGATTGTCTGAAAT+AGG | - | chr1.4:88159776-88159795 | MS.gene90792:intron | 30.0% |
| !! | CATTCTTTCTATTTTGGAAG+TGG | - | chr1.4:88161265-88161284 | MS.gene90792:CDS | 30.0% |
| !!! | ATTATTTTAAAGCTCGCAAC+TGG | - | chr1.4:88159400-88159419 | MS.gene90792:CDS | 30.0% |
| !!! | CTAATTTTTAAAGCTTCTGG+GGG | + | chr1.4:88161958-88161977 | None:intergenic | 30.0% |
| !!! | TTTGGTTTTTCCTACATGTT+TGG | - | chr1.4:88159210-88159229 | MS.gene90792:CDS | 30.0% |
| AAACTATAGAGATGTGGTGA+TGG | + | chr1.4:88159833-88159852 | None:intergenic | 35.0% | |
| AACGAGAGTTGACTAGATAA+AGG | - | chr1.4:88161056-88161075 | MS.gene90792:intron | 35.0% | |
| AAGCTAAGTATGAAGAGCTT+GGG | + | chr1.4:88158586-88158605 | None:intergenic | 35.0% | |
| AATTAACAACAGTAGGGTAG+GGG | + | chr1.4:88159927-88159946 | None:intergenic | 35.0% | |
| ACCCTACTGTTGTTAATTAG+TGG | - | chr1.4:88159929-88159948 | MS.gene90792:intron | 35.0% | |
| AGCAAGAAACTCACAGATTA+TGG | - | chr1.4:88160831-88160850 | MS.gene90792:intron | 35.0% | |
| AGCCACTAATTAACAACAGT+AGG | + | chr1.4:88159934-88159953 | None:intergenic | 35.0% | |
| AGTCATGGAAAATCATTCCT+AGG | + | chr1.4:88160308-88160327 | None:intergenic | 35.0% | |
| AGTGATACAGTTACCTTATC+TGG | - | chr1.4:88159237-88159256 | MS.gene90792:CDS | 35.0% | |
| AGTTACTGTCACAATTGGTT+CGG | - | chr1.4:88161477-88161496 | MS.gene90792:CDS | 35.0% | |
| ATATCAAACCCTATACCACT+AGG | + | chr1.4:88161212-88161231 | None:intergenic | 35.0% | |
| ATCACTACAACCAAACATGT+AGG | + | chr1.4:88159223-88159242 | None:intergenic | 35.0% | |
| ATGAGCTTACATTTAATGGG+TGG | - | chr1.4:88160519-88160538 | MS.gene90792:intron | 35.0% | |
| ATTGCAGGATTCCTGTTATT+GGG | - | chr1.4:88158821-88158840 | MS.gene90792:intron | 35.0% | |
| CAAGACAGATTAACCAGATA+AGG | + | chr1.4:88159253-88159272 | None:intergenic | 35.0% | |
| CTAATTAACAACAGTAGGGT+AGG | + | chr1.4:88159929-88159948 | None:intergenic | 35.0% | |
| CTGAATCAGAAAAAGCAGTA+AGG | - | chr1.4:88161782-88161801 | MS.gene90792:intron | 35.0% | |
| GATCATTCTTCAACTTCTCA+CGG | + | chr1.4:88162178-88162197 | None:intergenic | 35.0% | |
| GATTGTTTCATTGAGGAACT+AGG | + | chr1.4:88160153-88160172 | None:intergenic | 35.0% | |
| GCCACTAATTAACAACAGTA+GGG | + | chr1.4:88159933-88159952 | None:intergenic | 35.0% | |
| GCCCCTTCTAATGTATAAAT+TGG | - | chr1.4:88159482-88159501 | MS.gene90792:intron | 35.0% | |
| GTATGTGAAAACTGCATCTT+TGG | + | chr1.4:88159563-88159582 | None:intergenic | 35.0% | |
| TAAATCTCTCGGTACTAGTT+TGG | + | chr1.4:88161113-88161132 | None:intergenic | 35.0% | |
| TAGCTCAGGGATTAAATTAC+AGG | - | chr1.4:88161985-88162004 | MS.gene90792:CDS | 35.0% | |
| TATTGAAAAACCATCTCCCT+CGG | + | chr1.4:88160610-88160629 | None:intergenic | 35.0% | |
| TATTGCAGGATTCCTGTTAT+TGG | - | chr1.4:88158820-88158839 | MS.gene90792:intron | 35.0% | |
| TCGTTACTAGTACTTACACA+TGG | + | chr1.4:88161041-88161060 | None:intergenic | 35.0% | |
| TGGAGGATCAAGAAAAATAG+CGG | + | chr1.4:88160078-88160097 | None:intergenic | 35.0% | |
| TGTAGTTCCAATGAACATAC+CGG | + | chr1.4:88159439-88159458 | None:intergenic | 35.0% | |
| TTATCAAGATAAAGCCGTGA+AGG | - | chr1.4:88162118-88162137 | MS.gene90792:intron | 35.0% | |
| TTGTAAGACGTCACAATGTT+TGG | - | chr1.4:88160664-88160683 | MS.gene90792:intron | 35.0% | |
| TTGTCGGACAATATAGTACT+AGG | - | chr1.4:88160943-88160962 | MS.gene90792:intron | 35.0% | |
| TTTAACTGTTGAAAGACAGC+TGG | + | chr1.4:88159602-88159621 | None:intergenic | 35.0% | |
| ! | ACATAATTTGTCATCGTGCA+CGG | + | chr1.4:88160442-88160461 | None:intergenic | 35.0% |
| ! | AGAGAGGTACATAACAGAAA+TGG | - | chr1.4:88162145-88162164 | MS.gene90792:intron | 35.0% |
| ! | ATTGTCTGAAATAGGATGTG+AGG | - | chr1.4:88159784-88159803 | MS.gene90792:intron | 35.0% |
| ! | TGAGCTTACATTTAATGGGT+GGG | - | chr1.4:88160520-88160539 | MS.gene90792:intron | 35.0% |
| ! | TGCTGTTTGTACTAATGTCA+GGG | - | chr1.4:88159460-88159479 | MS.gene90792:intron | 35.0% |
| ! | TTGTGCTATTATAGGATCAC+AGG | + | chr1.4:88160871-88160890 | None:intergenic | 35.0% |
| ! | TTTTAACCTGTCGGGATATT+GGG | - | chr1.4:88159851-88159870 | MS.gene90792:intron | 35.0% |
| ! | TTTTTAACCTGTCGGGATAT+TGG | - | chr1.4:88159850-88159869 | MS.gene90792:intron | 35.0% |
| !! | GAAGGAGAAAGATTTTAGTG+TGG | - | chr1.4:88162337-88162356 | MS.gene90792:CDS | 35.0% |
| !! | TATCCACTTCTGTTTGGTTT+TGG | + | chr1.4:88161661-88161680 | None:intergenic | 35.0% |
| !! | TTAGTTTTCAAGGTTTGCTC+AGG | - | chr1.4:88160638-88160657 | MS.gene90792:intron | 35.0% |
| !! | TTGCTGTTTGTACTAATGTC+AGG | - | chr1.4:88159459-88159478 | MS.gene90792:intron | 35.0% |
| !!! | ATCCACTTCTGTTTGGTTTT+GGG | + | chr1.4:88161660-88161679 | None:intergenic | 35.0% |
| !!! | CTTACTGCTTTTTCTGATTC+AGG | + | chr1.4:88161784-88161803 | None:intergenic | 35.0% |
| AAAGCAAAGCAAAGACCTTC+AGG | + | chr1.4:88159641-88159660 | None:intergenic | 40.0% | |
| AACTGGACCAATACAACTTC+CGG | - | chr1.4:88159417-88159436 | MS.gene90792:CDS | 40.0% | |
| AACTTCCTTCTAAGCAGCTT+AGG | - | chr1.4:88160778-88160797 | MS.gene90792:intron | 40.0% | |
| AATGCATATCTGAGCTTCTG+CGG | + | chr1.4:88162037-88162056 | None:intergenic | 40.0% | |
| ACAACTTCCGGTATGTTCAT+TGG | - | chr1.4:88159429-88159448 | MS.gene90792:CDS | 40.0% | |
| AGGTAAGAGCAGGATAGTTT+AGG | + | chr1.4:88161870-88161889 | None:intergenic | 40.0% | |
| ATTAACAACAGTAGGGTAGG+GGG | + | chr1.4:88159926-88159945 | None:intergenic | 40.0% | |
| ATTCACACAATGTTTGGCGT+CGG | + | chr1.4:88158958-88158977 | None:intergenic | 40.0% | |
| CAAGCTAAGTATGAAGAGCT+TGG | + | chr1.4:88158587-88158606 | None:intergenic | 40.0% | |
| CAAGCTCTTCATACTTAGCT+TGG | - | chr1.4:88158585-88158604 | MS.gene90792:CDS | 40.0% | |
| CAATCCATTGCAAAATCCGA+GGG | - | chr1.4:88160591-88160610 | MS.gene90792:intron | 40.0% | |
| CAATGGTCCTACTAATCTCT+CGG | + | chr1.4:88161741-88161760 | None:intergenic | 40.0% | |
| CTATCCTGCTCTTACCTATT+TGG | - | chr1.4:88161873-88161892 | MS.gene90792:intron | 40.0% | |
| CTATGAAGATGATAAGGCGA+AGG | - | chr1.4:88162319-88162338 | MS.gene90792:CDS | 40.0% | |
| CTCAAAGCTGTCTCTTTCAT+GGG | + | chr1.4:88158511-88158530 | None:intergenic | 40.0% | |
| GAACATACCGGAAGTTGTAT+TGG | + | chr1.4:88159427-88159446 | None:intergenic | 40.0% | |
| GAGAAGTCACTTCAACAAAG+AGG | + | chr1.4:88158870-88158889 | None:intergenic | 40.0% | |
| GCATTCAACATGTCAGTATC+TGG | + | chr1.4:88162245-88162264 | None:intergenic | 40.0% | |
| GGAGGATCAAGAAAAATAGC+GGG | + | chr1.4:88160077-88160096 | None:intergenic | 40.0% | |
| GTCCAAAATATAGGACACTG+AGG | - | chr1.4:88158995-88159014 | MS.gene90792:intron | 40.0% | |
| GTGGATTCATTGCCTGTTAT+GGG | - | chr1.4:88162356-88162375 | MS.gene90792:CDS | 40.0% | |
| TACTGACATGTTGAATGCTG+AGG | - | chr1.4:88162247-88162266 | MS.gene90792:CDS | 40.0% | |
| TAGACCAAATAGGTAAGAGC+AGG | + | chr1.4:88161880-88161899 | None:intergenic | 40.0% | |
| TAGGTGAAGGATATTCACCA+TGG | + | chr1.4:88158534-88158553 | None:intergenic | 40.0% | |
| TCATATGTTGCCATAGGTGA+AGG | + | chr1.4:88158547-88158566 | None:intergenic | 40.0% | |
| TGGTGAATATCCTTCACCTA+TGG | - | chr1.4:88158534-88158553 | MS.gene90792:CDS | 40.0% | |
| TGTGGATTCATTGCCTGTTA+TGG | - | chr1.4:88162355-88162374 | MS.gene90792:CDS | 40.0% | |
| TGTTGTTAGCAGGAACACTA+TGG | + | chr1.4:88161561-88161580 | None:intergenic | 40.0% | |
| TTACACCTAAGCTGCTTAGA+AGG | + | chr1.4:88160786-88160805 | None:intergenic | 40.0% | |
| TTCACCTATGGCAACATATG+AGG | - | chr1.4:88158546-88158565 | MS.gene90792:CDS | 40.0% | |
| TTGCAGGATTCCTGTTATTG+GGG | - | chr1.4:88158822-88158841 | MS.gene90792:intron | 40.0% | |
| TTTAACCTGTCGGGATATTG+GGG | - | chr1.4:88159852-88159871 | MS.gene90792:intron | 40.0% | |
| TTTGTTGAAGTGACTTCTCG+TGG | - | chr1.4:88158871-88158890 | MS.gene90792:intron | 40.0% | |
| ! | AACATGTCAGTATCTGGTTC+AGG | + | chr1.4:88162239-88162258 | None:intergenic | 40.0% |
| ! | ACTTTTGTCACCCTGACTAT+TGG | + | chr1.4:88161087-88161106 | None:intergenic | 40.0% |
| ! | CAAATGCTTCTTTTGTGCTG+CGG | - | chr1.4:88159337-88159356 | MS.gene90792:CDS | 40.0% |
| ! | GAGCTTACATTTAATGGGTG+GGG | - | chr1.4:88160521-88160540 | MS.gene90792:intron | 40.0% |
| !! | ATTGGTTCGGAGAAACTCAA+AGG | - | chr1.4:88161490-88161509 | MS.gene90792:CDS | 40.0% |
| !! | GAGGGAGATGGTTTTTCAAT+AGG | - | chr1.4:88160609-88160628 | MS.gene90792:intron | 40.0% |
| AAGACAGCTGGTTGAACTTG+TGG | + | chr1.4:88159590-88159609 | None:intergenic | 45.0% | |
| AATTCCCTTCCCCCAATAAC+AGG | + | chr1.4:88158835-88158854 | None:intergenic | 45.0% | |
| ACCTATGGCAACATATGAGG+AGG | - | chr1.4:88158549-88158568 | MS.gene90792:CDS | 45.0% | |
| ACCTCCTCATATGTTGCCAT+AGG | + | chr1.4:88158553-88158572 | None:intergenic | 45.0% | |
| ATTGCAAAATCCGAGGGAGA+TGG | - | chr1.4:88160597-88160616 | MS.gene90792:intron | 45.0% | |
| CAACACCACCTAGTGGTATA+GGG | - | chr1.4:88161201-88161220 | MS.gene90792:intron | 45.0% | |
| CACCCAAAACCAAACAGAAG+TGG | - | chr1.4:88161655-88161674 | MS.gene90792:intron | 45.0% | |
| CGAGAGATTAGTAGGACCAT+TGG | - | chr1.4:88161739-88161758 | MS.gene90792:intron | 45.0% | |
| CTCAGCAATGGGATCATCTT+CGG | - | chr1.4:88161402-88161421 | MS.gene90792:intron | 45.0% | |
| CTTGTTCCAGAGTTCACCAA+TGG | + | chr1.4:88161758-88161777 | None:intergenic | 45.0% | |
| GAGCAGGATAGTTTAGGAAC+TGG | + | chr1.4:88161864-88161883 | None:intergenic | 45.0% | |
| GATTCCTGTTATTGGGGGAA+GGG | - | chr1.4:88158828-88158847 | MS.gene90792:intron | 45.0% | |
| GCAATCCATTGCAAAATCCG+AGG | - | chr1.4:88160590-88160609 | MS.gene90792:intron | 45.0% | |
| GCTCAAAGCTGTCTCTTTCA+TGG | + | chr1.4:88158512-88158531 | None:intergenic | 45.0% | |
| GCTGTCTCTTTCATGGGTAA+TGG | + | chr1.4:88158505-88158524 | None:intergenic | 45.0% | |
| GGGGTGTAGTTGCAATTGTT+TGG | - | chr1.4:88159761-88159780 | MS.gene90792:intron | 45.0% | |
| GTACCTCTCTTTGTCCTTCA+CGG | + | chr1.4:88162135-88162154 | None:intergenic | 45.0% | |
| GTTAGCAGGAACACTATGGT+GGG | + | chr1.4:88161557-88161576 | None:intergenic | 45.0% | |
| TCAAACCCTATACCACTAGG+TGG | + | chr1.4:88161209-88161228 | None:intergenic | 45.0% | |
| TCAACACCACCTAGTGGTAT+AGG | - | chr1.4:88161200-88161219 | MS.gene90792:intron | 45.0% | |
| TCAGGAAATCGCTGTTGAAG+TGG | + | chr1.4:88162221-88162240 | None:intergenic | 45.0% | |
| TCATTGCCTGTTATGGGAGT+TGG | - | chr1.4:88162362-88162381 | MS.gene90792:CDS | 45.0% | |
| TCTCTGATTTCTTCCTGCGT+CGG | + | chr1.4:88161615-88161634 | None:intergenic | 45.0% | |
| TCTCTTGTGCTCTCAGCAAT+GGG | - | chr1.4:88161391-88161410 | MS.gene90792:intron | 45.0% | |
| TCTTTGCAGAACAGCATCCA+AGG | - | chr1.4:88161689-88161708 | MS.gene90792:intron | 45.0% | |
| TGCAGGATTCCTGTTATTGG+GGG | - | chr1.4:88158823-88158842 | MS.gene90792:intron | 45.0% | |
| TGTTAGCAGGAACACTATGG+TGG | + | chr1.4:88161558-88161577 | None:intergenic | 45.0% | |
| TGTTATTGGGGGAAGGGAAT+TGG | - | chr1.4:88158834-88158853 | MS.gene90792:intron | 45.0% | |
| TTAACCTGTCGGGATATTGG+GGG | - | chr1.4:88159853-88159872 | MS.gene90792:intron | 45.0% | |
| TTCTCTTGTGCTCTCAGCAA+TGG | - | chr1.4:88161390-88161409 | MS.gene90792:intron | 45.0% | |
| TTGAAGTGACTTCTCGTGGA+GGG | - | chr1.4:88158875-88158894 | MS.gene90792:intron | 45.0% | |
| ! | ATCTCCCTCGGATTTTGCAA+TGG | + | chr1.4:88160598-88160617 | None:intergenic | 45.0% |
| ! | CGCCTCAGTGTCCTATATTT+TGG | + | chr1.4:88159000-88159019 | None:intergenic | 45.0% |
| ! | GAAGCATTTGTAGCCGTTGA+TGG | + | chr1.4:88159327-88159346 | None:intergenic | 45.0% |
| !! | AAAGAGACAGCTTTGAGCCA+TGG | - | chr1.4:88158514-88158533 | MS.gene90792:CDS | 45.0% |
| !! | GAAAACTGCATCTTTGGAGC+AGG | + | chr1.4:88159557-88159576 | None:intergenic | 45.0% |
| !! | TAAATGAAAAATTATAATAA+TGG | - | chr1.4:88160734-88160753 | MS.gene90792:intron | 5.0% |
| AAAACCTCTTCACCGAGGGA+AGG | - | chr1.4:88161714-88161733 | MS.gene90792:intron | 50.0% | |
| AAGCCGTGAAGGACAAAGAG+AGG | - | chr1.4:88162129-88162148 | MS.gene90792:intron | 50.0% | |
| AGGCTAAAACCTCTTCACCG+AGG | - | chr1.4:88161709-88161728 | MS.gene90792:intron | 50.0% | |
| AGGTTGTCGGGGTCATTGAT+GGG | - | chr1.4:88161434-88161453 | MS.gene90792:CDS | 50.0% | |
| ATCATCTTCGGCAGGATCTC+AGG | - | chr1.4:88161414-88161433 | MS.gene90792:intron | 50.0% | |
| CATGGGCACCAAGTTCATGT+AGG | - | chr1.4:88158624-88158643 | MS.gene90792:CDS | 50.0% | |
| GAGAAGCTCCACACTCTCAT+GGG | - | chr1.4:88158607-88158626 | MS.gene90792:CDS | 50.0% | |
| GCAAAGCAAAGACCTTCAGG+CGG | + | chr1.4:88159638-88159657 | None:intergenic | 50.0% | |
| GGAAGGACCGAGAGATTAGT+AGG | - | chr1.4:88161731-88161750 | MS.gene90792:intron | 50.0% | |
| GGATTCCTGTTATTGGGGGA+AGG | - | chr1.4:88158827-88158846 | MS.gene90792:intron | 50.0% | |
| GGCAGACTCTCTTCAAACTC+CGG | - | chr1.4:88162268-88162287 | MS.gene90792:CDS | 50.0% | |
| GGCTAAAACCTCTTCACCGA+GGG | - | chr1.4:88161710-88161729 | MS.gene90792:intron | 50.0% | |
| GTAGGACCATTGGTGAACTC+TGG | - | chr1.4:88161749-88161768 | MS.gene90792:intron | 50.0% | |
| GTTAATTCTGCTCCGCCTGA+AGG | - | chr1.4:88159623-88159642 | MS.gene90792:intron | 50.0% | |
| GTTGAAGTGACTTCTCGTGG+AGG | - | chr1.4:88158874-88158893 | MS.gene90792:intron | 50.0% | |
| TAACCTGTCGGGATATTGGG+GGG | - | chr1.4:88159854-88159873 | MS.gene90792:intron | 50.0% | |
| TAATCTCTCGGTCCTTCCCT+CGG | + | chr1.4:88161729-88161748 | None:intergenic | 50.0% | |
| TCAGCACCAACTCCCATAAC+AGG | + | chr1.4:88162371-88162390 | None:intergenic | 50.0% | |
| TTGCAGTCAACACCACCTAG+TGG | - | chr1.4:88161194-88161213 | MS.gene90792:intron | 50.0% | |
| !! | CGGTGAAGAGGTTTTAGCCT+TGG | + | chr1.4:88161709-88161728 | None:intergenic | 50.0% |
| !!! | CTGTTTGGTTTTGGGTGAGC+AGG | + | chr1.4:88161652-88161671 | None:intergenic | 50.0% |
| AACAACGTGACCGCCTCTGT+CGG | - | chr1.4:88161577-88161596 | MS.gene90792:intron | 55.0% | |
| CAGGTTGTCGGGGTCATTGA+TGG | - | chr1.4:88161433-88161452 | MS.gene90792:CDS | 55.0% | |
| CCAAGTTCATGTAGGCTCCC+TGG | - | chr1.4:88158632-88158651 | MS.gene90792:CDS | 55.0% | |
| CCAGGGAGCCTACATGAACT+TGG | + | chr1.4:88158635-88158654 | None:intergenic | 55.0% | |
| CCGGAGCAGAGTAGTTCAGA+CGG | - | chr1.4:88162287-88162306 | MS.gene90792:CDS | 55.0% | |
| CCGTCTGAACTACTCTGCTC+CGG | + | chr1.4:88162290-88162309 | None:intergenic | 55.0% | |
| CGGTGTGTAGACACACAGTC+AGG | + | chr1.4:88162017-88162036 | None:intergenic | 55.0% | |
| GCAATGGGATCATCTTCGGC+AGG | - | chr1.4:88161406-88161425 | MS.gene90792:intron | 55.0% | |
| GGAGAAGCTCCACACTCTCA+TGG | - | chr1.4:88158606-88158625 | MS.gene90792:CDS | 55.0% | |
| ! | GCGGTCACGTTGTTGTTAGC+AGG | + | chr1.4:88161571-88161590 | None:intergenic | 55.0% |
| ! | GCTGGCAGCACAGGATTTTG+TGG | + | chr1.4:88161532-88161551 | None:intergenic | 55.0% |
| ! | GGAACACTATGGTGGGATGC+TGG | + | chr1.4:88161550-88161569 | None:intergenic | 55.0% |
| ! | TCGGCAGGATCTCAGGTTGT+CGG | - | chr1.4:88161421-88161440 | MS.gene90792:intron | 55.0% |
| !! | ACTTGGTGCCCATGAGAGTG+TGG | + | chr1.4:88158618-88158637 | None:intergenic | 55.0% |
| !! | GCATCTTTGGAGCAGGAGCT+GGG | + | chr1.4:88159550-88159569 | None:intergenic | 55.0% |
| !! | TGCATCTTTGGAGCAGGAGC+TGG | + | chr1.4:88159551-88159570 | None:intergenic | 55.0% |
| ACGATGGACACCGACAGAGG+CGG | + | chr1.4:88161590-88161609 | None:intergenic | 60.0% | |
| TCACCCCCCAATATCCCGAC+AGG | + | chr1.4:88159860-88159879 | None:intergenic | 60.0% | |
| ! | CGGCAGGATCTCAGGTTGTC+GGG | - | chr1.4:88161422-88161441 | MS.gene90792:intron | 60.0% |
| ! | GGCAGGATCTCAGGTTGTCG+GGG | - | chr1.4:88161423-88161442 | MS.gene90792:intron | 60.0% |
| !! | CTTTGGAGCAGGAGCTGGGA+TGG | + | chr1.4:88159546-88159565 | None:intergenic | 60.0% |
| CGGTCCTTCCCTCGGTGAAG+AGG | + | chr1.4:88161721-88161740 | None:intergenic | 65.0% | |
| GCGACGATGGACACCGACAG+AGG | + | chr1.4:88161593-88161612 | None:intergenic | 65.0% | |
| TGGTGGGATGCTGGCAGCAC+AGG | + | chr1.4:88161541-88161560 | None:intergenic | 65.0% | |
| ! | TCTTCCTGCGTCGGCGACGA+TGG | + | chr1.4:88161606-88161625 | None:intergenic | 65.0% |
| GTGTCCATCGTCGCCGACGC+AGG | - | chr1.4:88161599-88161618 | MS.gene90792:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 88158472 | 88162397 | 88158472 | ID=MS.gene90792 |
| chr1.4 | mRNA | 88158472 | 88162397 | 88158472 | ID=MS.gene90792.t1;Parent=MS.gene90792 |
| chr1.4 | exon | 88162228 | 88162397 | 88162228 | ID=MS.gene90792.t1.exon1;Parent=MS.gene90792.t1 |
| chr1.4 | CDS | 88162228 | 88162397 | 88162228 | ID=cds.MS.gene90792.t1;Parent=MS.gene90792.t1 |
| chr1.4 | exon | 88161963 | 88162041 | 88161963 | ID=MS.gene90792.t1.exon2;Parent=MS.gene90792.t1 |
| chr1.4 | CDS | 88161963 | 88162041 | 88161963 | ID=cds.MS.gene90792.t1;Parent=MS.gene90792.t1 |
| chr1.4 | exon | 88161431 | 88161593 | 88161431 | ID=MS.gene90792.t1.exon3;Parent=MS.gene90792.t1 |
| chr1.4 | CDS | 88161431 | 88161593 | 88161431 | ID=cds.MS.gene90792.t1;Parent=MS.gene90792.t1 |
| chr1.4 | exon | 88161225 | 88161347 | 88161225 | ID=MS.gene90792.t1.exon4;Parent=MS.gene90792.t1 |
| chr1.4 | CDS | 88161225 | 88161347 | 88161225 | ID=cds.MS.gene90792.t1;Parent=MS.gene90792.t1 |
| chr1.4 | exon | 88159071 | 88159462 | 88159071 | ID=MS.gene90792.t1.exon5;Parent=MS.gene90792.t1 |
| chr1.4 | CDS | 88159071 | 88159462 | 88159071 | ID=cds.MS.gene90792.t1;Parent=MS.gene90792.t1 |
| chr1.4 | exon | 88158472 | 88158753 | 88158472 | ID=MS.gene90792.t1.exon6;Parent=MS.gene90792.t1 |
| chr1.4 | CDS | 88158472 | 88158753 | 88158472 | ID=cds.MS.gene90792.t1;Parent=MS.gene90792.t1 |
| Gene Sequence |
| Protein sequence |
