AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049427


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049427.t1 MTR_3g093570 94.861 467 19 1 1 462 1 467 0.0 865
MS.gene049427.t1 MTR_3g093570 93.539 356 18 1 1 351 1 356 0.0 635
MS.gene049427.t1 MTR_2g102800 29.341 334 176 10 127 456 376 653 3.08e-25 109
MS.gene049427.t1 MTR_4g011440 27.003 337 186 11 125 456 370 651 8.68e-25 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049427.t1 AT3G10840 56.532 421 157 8 49 458 52 457 2.96e-155 449
MS.gene049427.t1 AT3G10840 57.494 407 147 8 63 458 5 396 2.38e-154 444
MS.gene049427.t1 AT3G10840 59.326 386 135 7 84 458 8 382 6.18e-154 442
MS.gene049427.t1 AT3G10840 59.326 386 135 7 84 458 8 382 6.18e-154 442
MS.gene049427.t1 AT1G15490 27.034 381 213 12 77 449 164 487 4.40e-27 114
MS.gene049427.t1 AT1G15490 27.034 381 213 12 77 449 245 568 6.01e-27 114
MS.gene049427.t1 AT1G15490 27.110 391 217 13 77 459 316 646 1.20e-26 113
MS.gene049427.t1 AT1G80280 27.895 380 202 13 79 449 326 642 3.52e-26 112
MS.gene049427.t1 AT1G52750 28.221 326 176 9 127 449 356 626 4.41e-23 102
MS.gene049427.t1 AT1G15490 31.447 159 97 5 77 230 316 467 1.82e-12 69.7

Find 100 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTGAATTGTGGACAAT+TGG 0.271000 3.3:-77947510 MS.gene049427:CDS
ATTCACTGCTGCAATGCTTC+TGG 0.272675 3.3:-77945212 MS.gene049427:CDS
CCCCACTAAAATTGCCTTCT+CGG 0.277300 3.3:+77946763 None:intergenic
TCACGATATTTGCTTCTTCA+TGG 0.284256 3.3:-77947433 MS.gene049427:CDS
ATCCAATTGTTGGACTTTAC+AGG 0.285682 3.3:-77945962 MS.gene049427:CDS
TTGTTATGAGAAGCATAATT+TGG 0.289447 3.3:+77947407 None:intergenic
AACTGTTGTCTTCTTTCCTT+TGG 0.297738 3.3:+77945997 None:intergenic
TCTTCTTCCCTCGGTGGTTC+AGG 0.303294 3.3:-77947365 MS.gene049427:intron
ACATGCTCAGAGACCTGTTT+TGG 0.311785 3.3:+77945408 None:intergenic
CAATTGTTGAAAACTTTCTA+AGG 0.319019 3.3:-77944872 MS.gene049427:CDS
CAGCGTTTGGATTGACATCT+AGG 0.331482 3.3:-77946886 MS.gene049427:CDS
TCTATCCTGCGTTCTTCCCC+TGG 0.359604 3.3:-77945840 MS.gene049427:CDS
ATTAGAGCAGCAACCCGTTC+AGG 0.371410 3.3:+77946089 None:intergenic
GCCATGGAGTATGCATTTAG+AGG 0.382748 3.3:+77946830 None:intergenic
TTGTACAAAATTCATGTTAC+GGG 0.385371 3.3:+77944813 None:intergenic
ATGATTCTGTTGCATGGATT+CGG 0.385624 3.3:-77946989 MS.gene049427:CDS
CAGCTTGTTGGTTTGTGCTT+GGG 0.390201 3.3:+77947021 None:intergenic
TTCAGAGCAGTTGTTGGATG+TGG 0.391657 3.3:-77947194 MS.gene049427:intron
GCCATTGAGGGTTAAGGATT+GGG 0.400126 3.3:-77945251 MS.gene049427:CDS
AAATTCATGTTACGGGTTGT+AGG 0.405204 3.3:+77944820 None:intergenic
GTCACACGAAATCCAATTGT+TGG 0.405598 3.3:-77945972 MS.gene049427:CDS
GTAAACTTAACTTCTGGAAA+TGG 0.406321 3.3:-77946863 MS.gene049427:CDS
GTGATCGACTAGTTCCTTCA+TGG 0.407021 3.3:-77944995 MS.gene049427:CDS
GCTTCTGCTTCTTCTTCCCT+CGG 0.411248 3.3:-77947374 MS.gene049427:CDS
TGCAATGTACATGATAATCT+TGG 0.413417 3.3:+77945932 None:intergenic
AATGCAGCCATTGAGGGTTA+AGG 0.418759 3.3:-77945257 MS.gene049427:intron
TCTGGATCAGCTAATAGCTT+TGG 0.418943 3.3:+77947115 None:intergenic
AGAAAATTGGGTGTAGTAAG+TGG 0.424399 3.3:+77946041 None:intergenic
AGAATGGCAATTGATAAGTT+TGG 0.426361 3.3:-77945462 MS.gene049427:CDS
GCATTGAATGCAGCCATTGA+GGG 0.446087 3.3:-77945263 MS.gene049427:intron
AATCCATGCAACAGAATCAT+AGG 0.447499 3.3:+77946992 None:intergenic
GTCTCTGAGCATGTCCTTAG+TGG 0.450535 3.3:-77945399 MS.gene049427:CDS
TCTCTGAATTGTGGACAATT+GGG 0.453789 3.3:-77947509 MS.gene049427:CDS
ATATTTCGAAGCTCCTGAAC+GGG 0.453927 3.3:-77946102 MS.gene049427:CDS
TCTAGGGTAAACTTAACTTC+TGG 0.455409 3.3:-77946869 MS.gene049427:CDS
TTGTGCTTGGGAATGAGATT+CGG 0.459568 3.3:+77947033 None:intergenic
CATAGGCAAACACAGCTTGT+TGG 0.461823 3.3:+77947009 None:intergenic
TGCTGCAATGCTTCTGGACG+AGG 0.462142 3.3:-77945206 MS.gene049427:CDS
AGCCATTGAGGGTTAAGGAT+TGG 0.464429 3.3:-77945252 MS.gene049427:CDS
CTTGTACAAAATTCATGTTA+CGG 0.468317 3.3:+77944812 None:intergenic
GAACATGTAGCCTCGGCTAA+AGG 0.470554 3.3:+77946932 None:intergenic
ATGTGGGATCAAAGAAGAAA+AGG 0.473757 3.3:-77947177 MS.gene049427:CDS
AAGAAAAGGAAAGAGATAGC+TGG 0.481075 3.3:-77947163 MS.gene049427:CDS
AGAGATAGCTGGAATAGATC+AGG 0.481817 3.3:-77947152 MS.gene049427:CDS
TCCCAATCCTTAACCCTCAA+TGG 0.484351 3.3:+77945250 None:intergenic
TTCATGGTATGATCCAAAAC+AGG 0.485270 3.3:-77945421 MS.gene049427:CDS
CATGAATGTGTAGAGCTAGT+AGG 0.486151 3.3:+77947476 None:intergenic
TAAGGATTGGGATAGGGCAC+TGG 0.491068 3.3:-77945239 MS.gene049427:CDS
AGAAGAAGCAGAAGCAATGA+AGG 0.493901 3.3:+77947382 None:intergenic
TTGTTGTTCAGAGCAGTTGT+TGG 0.494913 3.3:-77947200 MS.gene049427:intron
AACCTGTAAAGTCCAACAAT+TGG 0.497943 3.3:+77945960 None:intergenic
TTGCCTATGATTCTGTTGCA+TGG 0.498619 3.3:-77946995 MS.gene049427:CDS
GTTGCATGGATTCGGAGCCT+CGG 0.501535 3.3:-77946981 MS.gene049427:CDS
CTGCTGCAGTTCGAAATTCA+TGG 0.508279 3.3:-77945437 MS.gene049427:CDS
ACAGCTTGTTGGTTTGTGCT+TGG 0.518623 3.3:+77947020 None:intergenic
ATATGAATCTCAGGTAAGAA+TGG 0.520846 3.3:-77945478 MS.gene049427:intron
GAGGGTTAAGGATTGGGATA+GGG 0.521224 3.3:-77945245 MS.gene049427:CDS
AAGAGAATCTCTCTGAATTG+TGG 0.523614 3.3:-77947518 MS.gene049427:CDS
ATTACTTCAAACGATGCTCC+TGG 0.525094 3.3:+77944945 None:intergenic
AACTTTCTAAGGAGACTAGC+TGG 0.528709 3.3:-77944861 MS.gene049427:CDS
GCAAATATCGTGAAACGTGA+AGG 0.529725 3.3:+77947443 None:intergenic
TGTGCAGTTCTGATTGTAAC+CGG 0.531619 3.3:-77945023 MS.gene049427:intron
TGAGGGTTAAGGATTGGGAT+AGG 0.534539 3.3:-77945246 MS.gene049427:CDS
CTATCCTGCGTTCTTCCCCT+GGG 0.534716 3.3:-77945839 MS.gene049427:CDS
TGCTCTAATCCTAATTGCCC+CGG 0.536471 3.3:-77946075 MS.gene049427:CDS
AGCATTGAATGCAGCCATTG+AGG 0.536896 3.3:-77945264 MS.gene049427:intron
TTACCTTTGTATAACCACTA+AGG 0.537196 3.3:+77945385 None:intergenic
TGATATGTCAGGCACTCAGC+TGG 0.545480 3.3:-77946146 MS.gene049427:intron
TTTCTAAAAGAATCGGGAGA+AGG 0.549471 3.3:-77946023 MS.gene049427:CDS
TTCTTCCCCTGGGATAATGC+TGG 0.549567 3.3:-77945829 MS.gene049427:intron
CTGAATGAAATATCTTGTCC+TGG 0.551019 3.3:-77945151 MS.gene049427:intron
CATCATATTCATATATCTTG+TGG 0.560644 3.3:+77947056 None:intergenic
TCAGAGCAGTTGTTGGATGT+GGG 0.561730 3.3:-77947193 MS.gene049427:intron
TGATTTATTAAAAGCCGAGA+AGG 0.563100 3.3:-77946777 MS.gene049427:CDS
TCCTCTAAATGCATACTCCA+TGG 0.566442 3.3:-77946831 MS.gene049427:CDS
GAGTTGAGTATATTTATCAT+CGG 0.568376 3.3:+77945885 None:intergenic
GAATGTGTAGAGCTAGTAGG+AGG 0.570661 3.3:+77947479 None:intergenic
TGTATTACCAGCATTATCCC+AGG 0.576948 3.3:+77945822 None:intergenic
GGATTGGGATAGGGCACTGG+TGG 0.577488 3.3:-77945236 MS.gene049427:CDS
AACTAGTCGATCACTATCAC+CGG 0.578562 3.3:+77945004 None:intergenic
TCTGCTTCTTCTTCCCTCGG+TGG 0.585534 3.3:-77947371 MS.gene049427:CDS
AATCGGGAGAAGGCAACCAA+AGG 0.588799 3.3:-77946013 MS.gene049427:CDS
TAATAAATCAAAGAAATGCA+AGG 0.589648 3.3:+77946790 None:intergenic
TTATCCCAGGGGAAGAACGC+AGG 0.590594 3.3:+77945835 None:intergenic
AGCAAGCACTGAAAATGCCA+TGG 0.593327 3.3:+77946814 None:intergenic
AGCGTTTGGATTGACATCTA+GGG 0.594356 3.3:-77946885 MS.gene049427:CDS
AGTCTCTCAGCATTCCATGA+AGG 0.600227 3.3:+77944981 None:intergenic
CATATTTCGAAGCTCCTGAA+CGG 0.602456 3.3:-77946103 MS.gene049427:CDS
GATTATCATGTACATTGCAA+AGG 0.604945 3.3:-77945928 MS.gene049427:CDS
GTGAGGACCTGAACCACCGA+GGG 0.621442 3.3:+77947358 None:intergenic
GTATTACCAGCATTATCCCA+GGG 0.631989 3.3:+77945823 None:intergenic
ATGTGTAGAGCTAGTAGGAG+GGG 0.636128 3.3:+77947481 None:intergenic
AGACTTTCAAGAGTCATACC+AGG 0.641737 3.3:-77944963 MS.gene049427:CDS
TGTTATGAAGCCTTTAGCCG+AGG 0.647035 3.3:-77946942 MS.gene049427:CDS
TTTGAAGTAATTAAGCAATG+TGG 0.647419 3.3:-77944933 MS.gene049427:CDS
CTAGATGTCAATCCAAACGC+TGG 0.647574 3.3:+77946887 None:intergenic
TGTCCTTAGTGGTTATACAA+AGG 0.659738 3.3:-77945388 MS.gene049427:intron
AATGTGTAGAGCTAGTAGGA+GGG 0.663598 3.3:+77947480 None:intergenic
AGTGAGGACCTGAACCACCG+AGG 0.734066 3.3:+77947357 None:intergenic
TATTACCAGCATTATCCCAG+GGG 0.766035 3.3:+77945824 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAGAAAAAATATTTCATTA+AGG + chr3.3:77947233-77947252 None:intergenic 15.0%
!! CAGAAAAAATATTTCATTAA+GGG + chr3.3:77947232-77947251 None:intergenic 15.0%
!!! CTGTAATATTTTAAAATCTA+AGG - chr3.3:77945817-77945836 MS.gene049427:intron 15.0%
!! ATAATAATCGAAAAGAAACA+TGG - chr3.3:77946603-77946622 MS.gene049427:intron 20.0%
!! TAATAAATCAAAGAAATGCA+AGG + chr3.3:77945558-77945577 None:intergenic 20.0%
!! TAGTTACAGAATATGAAAAT+AGG + chr3.3:77947005-77947024 None:intergenic 20.0%
!! TATAAAGTTGACATCTAAAT+AGG - chr3.3:77945706-77945725 MS.gene049427:intron 20.0%
!! TTTGGAAACTTATAAGAAAA+GGG + chr3.3:77946178-77946197 None:intergenic 20.0%
!!! TTTTGGAAACTTATAAGAAA+AGG + chr3.3:77946179-77946198 None:intergenic 20.0%
! ACTTATTTGATCTTCTTTAC+TGG - chr3.3:77945854-77945873 MS.gene049427:CDS 25.0%
! AGACGTTAAAACTGTATAAT+TGG - chr3.3:77946101-77946120 MS.gene049427:CDS 25.0%
! ATCTCTAACAAAACAAACAA+TGG + chr3.3:77945034-77945053 None:intergenic 25.0%
! CAATTGTTGAAAACTTTCTA+AGG - chr3.3:77947473-77947492 MS.gene049427:CDS 25.0%
! CATCATATTCATATATCTTG+TGG + chr3.3:77945292-77945311 None:intergenic 25.0%
! GAAAAAGGTCTTTATCATAT+AGG + chr3.3:77946054-77946073 None:intergenic 25.0%
! GAGAATATAACACTTTCAAT+TGG + chr3.3:77946135-77946154 None:intergenic 25.0%
! GAGTTGAGTATATTTATCAT+CGG + chr3.3:77946463-77946482 None:intergenic 25.0%
! TGAGATTCATATGAAAGAAA+GGG + chr3.3:77946859-77946878 None:intergenic 25.0%
! TTCCAATAATGATATGTAAC+TGG + chr3.3:77946580-77946599 None:intergenic 25.0%
! TTCCAGTTACATATCATTAT+TGG - chr3.3:77946575-77946594 MS.gene049427:intron 25.0%
!! ACACCATATATAATTTGTCA+TGG - chr3.3:77946818-77946837 MS.gene049427:CDS 25.0%
!! TTGTTATGAGAAGCATAATT+TGG + chr3.3:77944941-77944960 None:intergenic 25.0%
!! TTTGAAGTAATTAAGCAATG+TGG - chr3.3:77947412-77947431 MS.gene049427:CDS 25.0%
!!! ACCCAATTTTCTAAAAGAAT+CGG - chr3.3:77946315-77946334 MS.gene049427:intron 25.0%
!!! GAAGAAGTTTAAGTTGAAAA+AGG + chr3.3:77946069-77946088 None:intergenic 25.0%
AACATCCGTCTGAAAAATAA+GGG + chr3.3:77945638-77945657 None:intergenic 30.0%
AACTCACAAAAACAACTATC+TGG + chr3.3:77945251-77945270 None:intergenic 30.0%
AATATCACCAATTATGACCA+AGG + chr3.3:77947295-77947314 None:intergenic 30.0%
AGAATGGCAATTGATAAGTT+TGG - chr3.3:77946883-77946902 MS.gene049427:CDS 30.0%
AGTTTCCAAAATGATATGTC+AGG - chr3.3:77946188-77946207 MS.gene049427:intron 30.0%
ATATGAATCTCAGGTAAGAA+TGG - chr3.3:77946867-77946886 MS.gene049427:CDS 30.0%
ATGAAAACAACTTATGGTCA+TGG + chr3.3:77945944-77945963 None:intergenic 30.0%
CCTGTAAATGTAAAATTCAG+AGG + chr3.3:77945780-77945799 None:intergenic 30.0%
CTGAGATTCATATGAAAGAA+AGG + chr3.3:77946860-77946879 None:intergenic 30.0%
CTTTCTTTCATATGAATCTC+AGG - chr3.3:77946858-77946877 MS.gene049427:CDS 30.0%
GATTATCATGTACATTGCAA+AGG - chr3.3:77946417-77946436 MS.gene049427:intron 30.0%
TGATTTATTAAAAGCCGAGA+AGG - chr3.3:77945568-77945587 MS.gene049427:intron 30.0%
TGCAATGTACATGATAATCT+TGG + chr3.3:77946416-77946435 None:intergenic 30.0%
TGGCCATGACAAATTATATA+TGG + chr3.3:77946824-77946843 None:intergenic 30.0%
TTACACATATCTAGATGCTT+TGG + chr3.3:77945747-77945766 None:intergenic 30.0%
TTACAGTTGTATCAATGCAT+TGG + chr3.3:77945803-77945822 None:intergenic 30.0%
TTACCTTTGTATAACCACTA+AGG + chr3.3:77946963-77946982 None:intergenic 30.0%
TTTGCCACATGAAGAAAAAA+TGG - chr3.3:77947438-77947457 MS.gene049427:CDS 30.0%
! CATGAAGACAAGGAATTTTA+AGG + chr3.3:77946690-77946709 None:intergenic 30.0%
! CCTCTGAATTTTACATTTAC+AGG - chr3.3:77945777-77945796 MS.gene049427:intron 30.0%
! GGAACATTGATTGAATGAAA+AGG + chr3.3:77946669-77946688 None:intergenic 30.0%
! GTAAACTTAACTTCTGGAAA+TGG - chr3.3:77945482-77945501 MS.gene049427:intron 30.0%
!! AAAAATAAGGGCACTAAAAC+AGG + chr3.3:77945626-77945645 None:intergenic 30.0%
!! CCCAATTTTCTAAAAGAATC+GGG - chr3.3:77946316-77946335 MS.gene049427:intron 30.0%
!! CCCGATTCTTTTAGAAAATT+GGG + chr3.3:77946319-77946338 None:intergenic 30.0%
!! GTTTTAACGTCTGATTTCAA+TGG + chr3.3:77946093-77946112 None:intergenic 30.0%
!! TCCCGATTCTTTTAGAAAAT+TGG + chr3.3:77946320-77946339 None:intergenic 30.0%
!! TTCAGTCTTTTAGAAAGTTC+TGG + chr3.3:77947179-77947198 None:intergenic 30.0%
!!! AGTTGTTTTTGTGAGTTCAA+AGG - chr3.3:77945254-77945273 MS.gene049427:intron 30.0%
!!! CAAAAGTTCTAGCTTTTGAT+AGG - chr3.3:77945435-77945454 MS.gene049427:CDS 30.0%
!!! TTTTTTCTTCATGTGGCAAA+TGG + chr3.3:77947438-77947457 None:intergenic 30.0%
AACCTGTAAAGTCCAACAAT+TGG + chr3.3:77946388-77946407 None:intergenic 35.0%
AACTGTTGTCTTCTTTCCTT+TGG + chr3.3:77946351-77946370 None:intergenic 35.0%
AAGAAAAGGAAAGAGATAGC+TGG - chr3.3:77945182-77945201 MS.gene049427:CDS 35.0%
AAGAGAATCTCTCTGAATTG+TGG - chr3.3:77944827-77944846 MS.gene049427:CDS 35.0%
AATCCATGCAACAGAATCAT+AGG + chr3.3:77945356-77945375 None:intergenic 35.0%
AGAAAATTGGGTGTAGTAAG+TGG + chr3.3:77946307-77946326 None:intergenic 35.0%
AGTTGAACCTTGGTCATAAT+TGG - chr3.3:77947285-77947304 MS.gene049427:intron 35.0%
ATCCAATTGTTGGACTTTAC+AGG - chr3.3:77946383-77946402 MS.gene049427:intron 35.0%
ATGATTCTGTTGCATGGATT+CGG - chr3.3:77945356-77945375 MS.gene049427:intron 35.0%
ATGTGGGATCAAAGAAGAAA+AGG - chr3.3:77945168-77945187 MS.gene049427:CDS 35.0%
CAACATCCGTCTGAAAAATA+AGG + chr3.3:77945639-77945658 None:intergenic 35.0%
CAGCTATGTGAGGAAAAATA+TGG - chr3.3:77946722-77946741 MS.gene049427:intron 35.0%
CTGAATGAAATATCTTGTCC+TGG - chr3.3:77947194-77947213 MS.gene049427:intron 35.0%
CTGTTGTGTAAAGATCTAAC+TGG - chr3.3:77947249-77947268 MS.gene049427:intron 35.0%
GAGAGGATGAAAACAACTTA+TGG + chr3.3:77945950-77945969 None:intergenic 35.0%
GTATAGATAGAAGAAGAGTG+AGG + chr3.3:77945007-77945026 None:intergenic 35.0%
TATGTATGGACATGAAGACA+AGG + chr3.3:77946700-77946719 None:intergenic 35.0%
TCAAATAGTCTGTGCTTACT+GGG - chr3.3:77947054-77947073 MS.gene049427:CDS 35.0%
TCACGATATTTGCTTCTTCA+TGG - chr3.3:77944912-77944931 MS.gene049427:CDS 35.0%
TCTCTGAATTGTGGACAATT+GGG - chr3.3:77944836-77944855 MS.gene049427:CDS 35.0%
TGTCCTTAGTGGTTATACAA+AGG - chr3.3:77946957-77946976 MS.gene049427:CDS 35.0%
TTCATGGTATGATCCAAAAC+AGG - chr3.3:77946924-77946943 MS.gene049427:CDS 35.0%
! AACTTTTGAACATGTAGCCT+CGG + chr3.3:77945423-77945442 None:intergenic 35.0%
! ATATAATTTGTCATGGCCAC+TGG - chr3.3:77946825-77946844 MS.gene049427:CDS 35.0%
! ATTTTTCCAAGAGAAAACCG+AGG + chr3.3:77945384-77945403 None:intergenic 35.0%
! TAGGTGACTTTTGTGAATCT+AGG - chr3.3:77945660-77945679 MS.gene049427:intron 35.0%
! TCTAGGGTAAACTTAACTTC+TGG - chr3.3:77945476-77945495 MS.gene049427:intron 35.0%
! TTTCTAAAAGAATCGGGAGA+AGG - chr3.3:77946322-77946341 MS.gene049427:intron 35.0%
!! GTTGTTTTCATAAGCTATCC+TGG + chr3.3:77945972-77945991 None:intergenic 35.0%
!! TTTTTCAGACGGATGTTGTT+AGG - chr3.3:77945641-77945660 MS.gene049427:intron 35.0%
!!! TAGTGCCCTTATTTTTCAGA+CGG - chr3.3:77945630-77945649 MS.gene049427:intron 35.0%
!!! TCCTCCATTTTTTCTTCATG+TGG + chr3.3:77947445-77947464 None:intergenic 35.0%
AACTAGTCGATCACTATCAC+CGG + chr3.3:77947344-77947363 None:intergenic 40.0%
AATGTGTAGAGCTAGTAGGA+GGG + chr3.3:77944868-77944887 None:intergenic 40.0%
AGAAGAAGCAGAAGCAATGA+AGG + chr3.3:77944966-77944985 None:intergenic 40.0%
AGACTTTCAAGAGTCATACC+AGG - chr3.3:77947382-77947401 MS.gene049427:CDS 40.0%
AGAGATAGCTGGAATAGATC+AGG - chr3.3:77945193-77945212 MS.gene049427:CDS 40.0%
AGCGTTTGGATTGACATCTA+GGG - chr3.3:77945460-77945479 MS.gene049427:CDS 40.0%
ATATTTCGAAGCTCCTGAAC+GGG - chr3.3:77946243-77946262 MS.gene049427:intron 40.0%
ATTACTTCAAACGATGCTCC+TGG + chr3.3:77947403-77947422 None:intergenic 40.0%
CATACATAGTCAGCTATGTG+AGG - chr3.3:77946712-77946731 MS.gene049427:intron 40.0%
CATATTTCGAAGCTCCTGAA+CGG - chr3.3:77946242-77946261 MS.gene049427:intron 40.0%
CATGAATGTGTAGAGCTAGT+AGG + chr3.3:77944872-77944891 None:intergenic 40.0%
CTCAAATAGTCTGTGCTTAC+TGG - chr3.3:77947053-77947072 MS.gene049427:CDS 40.0%
CTCACATAGCTGACTATGTA+TGG + chr3.3:77946714-77946733 None:intergenic 40.0%
CTCTCTGAATTGTGGACAAT+TGG - chr3.3:77944835-77944854 MS.gene049427:CDS 40.0%
GAAAAGGGACTACAATGTAG+AGG + chr3.3:77946163-77946182 None:intergenic 40.0%
GCAAATATCGTGAAACGTGA+AGG + chr3.3:77944905-77944924 None:intergenic 40.0%
GCCACATGAAGAAAAAATGG+AGG - chr3.3:77947441-77947460 MS.gene049427:CDS 40.0%
GTAAGTGGAGCAAAAATTGC+CGG + chr3.3:77946292-77946311 None:intergenic 40.0%
GTATTACCAGCATTATCCCA+GGG + chr3.3:77946525-77946544 None:intergenic 40.0%
GTCACACGAAATCCAATTGT+TGG - chr3.3:77946373-77946392 MS.gene049427:intron 40.0%
TAAGTGGAGCAAAAATTGCC+GGG + chr3.3:77946291-77946310 None:intergenic 40.0%
TATGACCAAGGTTCAACTTG+AGG + chr3.3:77947283-77947302 None:intergenic 40.0%
TATTACCAGCATTATCCCAG+GGG + chr3.3:77946524-77946543 None:intergenic 40.0%
TCCTCTAAATGCATACTCCA+TGG - chr3.3:77945514-77945533 MS.gene049427:intron 40.0%
TCTGGATCAGCTAATAGCTT+TGG + chr3.3:77945233-77945252 None:intergenic 40.0%
TGTATTACCAGCATTATCCC+AGG + chr3.3:77946526-77946545 None:intergenic 40.0%
TTGCCTATGATTCTGTTGCA+TGG - chr3.3:77945350-77945369 MS.gene049427:intron 40.0%
TTGTGCTTGGGAATGAGATT+CGG + chr3.3:77945315-77945334 None:intergenic 40.0%
TTTCATAAGCTATCCTGGAG+AGG + chr3.3:77945967-77945986 None:intergenic 40.0%
! AACTTTCTAAGGAGACTAGC+TGG - chr3.3:77947484-77947503 MS.gene049427:CDS 40.0%
! GAGTGCCTGACATATCATTT+TGG + chr3.3:77946196-77946215 None:intergenic 40.0%
! TGTGCAGTTCTGATTGTAAC+CGG - chr3.3:77947322-77947341 MS.gene049427:intron 40.0%
! TTGTTGTTCAGAGCAGTTGT+TGG - chr3.3:77945145-77945164 MS.gene049427:intron 40.0%
!! AAGTTGTTTTCATCCTCTCC+AGG - chr3.3:77945951-77945970 MS.gene049427:CDS 40.0%
AAGTGGAGCAAAAATTGCCG+GGG + chr3.3:77946290-77946309 None:intergenic 45.0%
AATGCAGCCATTGAGGGTTA+AGG - chr3.3:77947088-77947107 MS.gene049427:CDS 45.0%
AGCCATTGAGGGTTAAGGAT+TGG - chr3.3:77947093-77947112 MS.gene049427:CDS 45.0%
AGTCTCTCAGCATTCCATGA+AGG + chr3.3:77947367-77947386 None:intergenic 45.0%
ATGTGTAGAGCTAGTAGGAG+GGG + chr3.3:77944867-77944886 None:intergenic 45.0%
ATTCACTGCTGCAATGCTTC+TGG - chr3.3:77947133-77947152 MS.gene049427:CDS 45.0%
CAAAAATTGCCGGGGCAATT+AGG + chr3.3:77946282-77946301 None:intergenic 45.0%
CAGCGTTTGGATTGACATCT+AGG - chr3.3:77945459-77945478 MS.gene049427:CDS 45.0%
CATAGGCAAACACAGCTTGT+TGG + chr3.3:77945339-77945358 None:intergenic 45.0%
CCCCACTAAAATTGCCTTCT+CGG + chr3.3:77945585-77945604 None:intergenic 45.0%
CTAGATGTCAATCCAAACGC+TGG + chr3.3:77945461-77945480 None:intergenic 45.0%
CTGCTGCAGTTCGAAATTCA+TGG - chr3.3:77946908-77946927 MS.gene049427:CDS 45.0%
GAATGTGTAGAGCTAGTAGG+AGG + chr3.3:77944869-77944888 None:intergenic 45.0%
GAGGGTTAAGGATTGGGATA+GGG - chr3.3:77947100-77947119 MS.gene049427:CDS 45.0%
GCATTGAATGCAGCCATTGA+GGG - chr3.3:77947082-77947101 MS.gene049427:CDS 45.0%
GCCATGGAGTATGCATTTAG+AGG + chr3.3:77945518-77945537 None:intergenic 45.0%
GCCATTGAGGGTTAAGGATT+GGG - chr3.3:77947094-77947113 MS.gene049427:CDS 45.0%
TAAGGGTCAGTGAAATCACC+AGG + chr3.3:77947215-77947234 None:intergenic 45.0%
TCAGAGCAGTTGTTGGATGT+GGG - chr3.3:77945152-77945171 MS.gene049427:CDS 45.0%
TCCCAATCCTTAACCCTCAA+TGG + chr3.3:77947098-77947117 None:intergenic 45.0%
TGAGGGTTAAGGATTGGGAT+AGG - chr3.3:77947099-77947118 MS.gene049427:CDS 45.0%
TGCTCTAATCCTAATTGCCC+CGG - chr3.3:77946270-77946289 MS.gene049427:intron 45.0%
TGTTATGAAGCCTTTAGCCG+AGG - chr3.3:77945403-77945422 MS.gene049427:CDS 45.0%
TTCAGAGCAGTTGTTGGATG+TGG - chr3.3:77945151-77945170 MS.gene049427:intron 45.0%
! ACATGCTCAGAGACCTGTTT+TGG + chr3.3:77946940-77946959 None:intergenic 45.0%
! AGCATTGAATGCAGCCATTG+AGG - chr3.3:77947081-77947100 MS.gene049427:CDS 45.0%
! AGCCGAGAAGGCAATTTTAG+TGG - chr3.3:77945580-77945599 MS.gene049427:intron 45.0%
! GTGATCGACTAGTTCCTTCA+TGG - chr3.3:77947350-77947369 MS.gene049427:intron 45.0%
!! ACAGCTTGTTGGTTTGTGCT+TGG + chr3.3:77945328-77945347 None:intergenic 45.0%
!! AGCAAGCACTGAAAATGCCA+TGG + chr3.3:77945534-77945553 None:intergenic 45.0%
!! CAGCTTGTTGGTTTGTGCTT+GGG + chr3.3:77945327-77945346 None:intergenic 45.0%
!! CATAGCCTCAAGTTGAACCT+TGG - chr3.3:77947275-77947294 MS.gene049427:intron 45.0%
!! CCGAGAAGGCAATTTTAGTG+GGG - chr3.3:77945582-77945601 MS.gene049427:intron 45.0%
!! GCCGAGAAGGCAATTTTAGT+GGG - chr3.3:77945581-77945600 MS.gene049427:intron 45.0%
AATCGGGAGAAGGCAACCAA+AGG - chr3.3:77946332-77946351 MS.gene049427:intron 50.0%
AGAAAGGGCCATTAGTCCAG+TGG + chr3.3:77946844-77946863 None:intergenic 50.0%
ATTAGAGCAGCAACCCGTTC+AGG + chr3.3:77946259-77946278 None:intergenic 50.0%
GAACATGTAGCCTCGGCTAA+AGG + chr3.3:77945416-77945435 None:intergenic 50.0%
GCTTCTGCTTCTTCTTCCCT+CGG - chr3.3:77944971-77944990 MS.gene049427:CDS 50.0%
GTCTCTGAGCATGTCCTTAG+TGG - chr3.3:77946946-77946965 MS.gene049427:CDS 50.0%
TAAGGATTGGGATAGGGCAC+TGG - chr3.3:77947106-77947125 MS.gene049427:CDS 50.0%
TGATATGTCAGGCACTCAGC+TGG - chr3.3:77946199-77946218 MS.gene049427:intron 50.0%
TGTCATGGCCACTGGACTAA+TGG - chr3.3:77946833-77946852 MS.gene049427:CDS 50.0%
TTCTTCCCCTGGGATAATGC+TGG - chr3.3:77946516-77946535 MS.gene049427:intron 50.0%
! GCTTTTGATAGGCCAGCGTT+TGG - chr3.3:77945446-77945465 MS.gene049427:CDS 50.0%
CTATCCTGCGTTCTTCCCCT+GGG - chr3.3:77946506-77946525 MS.gene049427:intron 55.0%
GTTGCATGGATTCGGAGCCT+CGG - chr3.3:77945364-77945383 MS.gene049427:intron 55.0%
TCTATCCTGCGTTCTTCCCC+TGG - chr3.3:77946505-77946524 MS.gene049427:intron 55.0%
TCTGCTTCTTCTTCCCTCGG+TGG - chr3.3:77944974-77944993 MS.gene049427:CDS 55.0%
TCTTCTTCCCTCGGTGGTTC+AGG - chr3.3:77944980-77944999 MS.gene049427:CDS 55.0%
TGCTGCAATGCTTCTGGACG+AGG - chr3.3:77947139-77947158 MS.gene049427:CDS 55.0%
TTATCCCAGGGGAAGAACGC+AGG + chr3.3:77946513-77946532 None:intergenic 55.0%
! TCGGAGCCTCGGTTTTCTCT+TGG - chr3.3:77945375-77945394 MS.gene049427:intron 55.0%
AGTGAGGACCTGAACCACCG+AGG + chr3.3:77944991-77945010 None:intergenic 60.0%
GTGAGGACCTGAACCACCGA+GGG + chr3.3:77944990-77945009 None:intergenic 60.0%
!! GGATTGGGATAGGGCACTGG+TGG - chr3.3:77947109-77947128 MS.gene049427:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 77944824 77947543 77944824 ID=MS.gene049427
chr3.3 mRNA 77944824 77947543 77944824 ID=MS.gene049427.t1;Parent=MS.gene049427
chr3.3 exon 77947366 77947543 77947366 ID=MS.gene049427.t1.exon1;Parent=MS.gene049427.t1
chr3.3 CDS 77947366 77947543 77947366 ID=cds.MS.gene049427.t1;Parent=MS.gene049427.t1
chr3.3 exon 77946764 77947211 77946764 ID=MS.gene049427.t1.exon2;Parent=MS.gene049427.t1
chr3.3 CDS 77946764 77947211 77946764 ID=cds.MS.gene049427.t1;Parent=MS.gene049427.t1
chr3.3 exon 77945830 77946157 77945830 ID=MS.gene049427.t1.exon3;Parent=MS.gene049427.t1
chr3.3 CDS 77945830 77946157 77945830 ID=cds.MS.gene049427.t1;Parent=MS.gene049427.t1
chr3.3 exon 77945389 77945487 77945389 ID=MS.gene049427.t1.exon4;Parent=MS.gene049427.t1
chr3.3 CDS 77945389 77945487 77945389 ID=cds.MS.gene049427.t1;Parent=MS.gene049427.t1
chr3.3 exon 77945152 77945272 77945152 ID=MS.gene049427.t1.exon5;Parent=MS.gene049427.t1
chr3.3 CDS 77945152 77945272 77945152 ID=cds.MS.gene049427.t1;Parent=MS.gene049427.t1
chr3.3 exon 77944824 77945038 77944824 ID=MS.gene049427.t1.exon6;Parent=MS.gene049427.t1
chr3.3 CDS 77944824 77945038 77944824 ID=cds.MS.gene049427.t1;Parent=MS.gene049427.t1
Gene Sequence

>MS.gene049427

ATGAAGAGAATCTCTCTGAATTGTGGACAATTGGGTCTCACCCCTCCTACTAGCTCTACACATTCATGTAATAAGCGTCCTTCACGTTTCACGATATTTGCTTCTTCATGGCTTCCAAATTATGCTTCTCATAACAACACCTTCATTGCTTCTGCTTCTTCTTCCCTCGGTGGTTCAGGTCCTCACTCTTCTTCTATCTATACTTCACCATTGTTTGTTTTGTTAGAGATAGATAGCTTATATATGTAAGCATTTATATGATAAGCGCATATGCTATAAGCACGAAATTAAATAGTTATTTAGTTACTTATATTATGTGAGTTGTTGTTCAGAGCAGTTGTTGGATGTGGGATCAAAGAAGAAAAGGAAAGAGATAGCTGGAATAGATCAGGATGAATTAGTAGATCCAAAGCTATTAGCTGATCCAGATAGTTGTTTTTGTGAGTTCAAAGGAGTGCATATACACCACAAGATATATGAATATGATGCCGAATCTCATTCCCAAGCACAAACCAACAAGCTGTGTTTGCCTATGATTCTGTTGCATGGATTCGGAGCCTCGGTTTTCTCTTGGAAAAATGTTATGAAGCCTTTAGCCGAGGCTACATGTTCAAAAGTTCTAGCTTTTGATAGGCCAGCGTTTGGATTGACATCTAGGGTAAACTTAACTTCTGGAAATGGAGACACAAATCCTCTAAATGCATACTCCATGGCATTTTCAGTGCTTGCTACCTTGCATTTCTTTGATTTATTAAAAGCCGAGAAGGCAATTTTAGTGGGGTATGTGAATATTCTATCTCCTGTTTTAGTGCCCTTATTTTTCAGACGGATGTTGTTAGGTGACTTTTGTGAATCTAGGTTTAGCTTACTTGCATCTTTTGTTATAAAGTTGACATCTAAATAGGTGATCATAAGTTGCACCAAAGCATCTAGATATGTGTAAATCTGATTATCCTCTGAATTTTACATTTACAGGCCAATGCATTGATACAACTGTAATATTTTAAAATCTAAGGATGTGTTTGTAGTGACTTATTTGATCTTCTTTACTGGCATAACAACTGTATAAACTTGTAAGACTGTTTGAGAGAACTTATGTGAATAACTCATGACATGTCCATGACCATAAGTTGTTTTCATCCTCTCCAGGATAGCTTATGAAAACAACTTATAGCTTATATGAAAAAATGTTTGACTTTGTTTTGATATATAACTTATACATAAGCACCTATATGATAAAGACCTTTTTCAACTTAAACTTCTTCTCCATTGAAATCAGACGTTAAAACTGTATAATTGGTGATATAACCAATTGAAAGTGTTATATTCTCATATGCCTCTACATTGTAGTCCCTTTTCTTATAAGTTTCCAAAATGATATGTCAGGCACTCAGCTGGTTCACTTGTAGCAGTTAACACATATTTCGAAGCTCCTGAACGGGTTGCTGCTCTAATCCTAATTGCCCCGGCAATTTTTGCTCCACTTACTACACCCAATTTTCTAAAAGAATCGGGAGAAGGCAACCAAAGGAAAGAAGACAACAGTTCTGTCACACGAAATCCAATTGTTGGACTTTACAGGTTGCTGTCCAAGATTATCATGTACATTGCAAAGGCAATAGCAGAGATGATGAAGCCGATGATAAATATACTCAACTCTCTCTATAAGAAACTGTTATCATCTATCCTGCGTTCTTCCCCTGGGATAATGCTGGTAATACACTTGTTCATGTAATACTATATAATCTTTGTTCCAGTTACATATCATTATTGGAAAATATAATAATCGAAAAGAAACATGGAATTATTAGCTCAGATACAATTACATTGAACTCACAAAAACCTTTTCATTCAATCAATGTTCCTTAAAATTCCTTGTCTTCATGTCCATACATAGTCAGCTATGTGAGGAAAAATATGGTTAGATTGCTTCTTGCTGATACACTTTTATGCATTTTAGTTTCTTTCTTTAAATGACTGCAATTCTTAAGCTGACACCATATATAATTTGTCATGGCCACTGGACTAATGGCCCTTTCTTTCATATGAATCTCAGGTAAGAATGGCAATTGATAAGTTTGGTGCTGCTGCAGTTCGAAATTCATGGTATGATCCAAAACAGGTCTCTGAGCATGTCCTTAGTGGTTATACAAAGGTAATGTAATCTGACAAAAAATTCCTATTTTCATATTCTGTAACTATATTCTTTCTTTTATTTTCATCATAATTCTCAAATAGTCTGTGCTTACTGGGTGTTAGCATTGAATGCAGCCATTGAGGGTTAAGGATTGGGATAGGGCACTGGTGGAATTCACTGCTGCAATGCTTCTGGACGAGGAATCTAATACAAAGCCAGAACTTTCTAAAAGACTGAATGAAATATCTTGTCCTGGTGATTTCACTGACCCTTAATGAAATATTTTTTCTGTTGTGTAAAGATCTAACTGGTTTCATAGCCTCAAGTTGAACCTTGGTCATAATTGGTGATATTGTTTGACTGTGCAGTTCTGATTGTAACCGGTGATAGTGATCGACTAGTTCCTTCATGGAATGCTGAGAGACTTTCAAGAGTCATACCAGGAGCATCGTTTGAAGTAATTAAGCAATGTGGCCATTTGCCACATGAAGAAAAAATGGAGGAGTTTATTTCAATTGTTGAAAACTTTCTAAGGAGACTAGCTGGTGATTCAAACAAACAAGACCTACAACCCGTAACATGA

Protein sequence

>MS.gene049427.t1

MKRISLNCGQLGLTPPTSSTHSCNKRPSRFTIFASSWLPNYASHNNTFIASASSSLGGSEQLLDVGSKKKRKEIAGIDQDELVDPKLLADPDSCFCEFKGVHIHHKIYEYDAESHSQAQTNKLCLPMILLHGFGASVFSWKNVMKPLAEATCSKVLAFDRPAFGLTSRVNLTSGNGDTNPLNAYSMAFSVLATLHFFDLLKAEKAILVGHSAGSLVAVNTYFEAPERVAALILIAPAIFAPLTTPNFLKESGEGNQRKEDNSSVTRNPIVGLYRLLSKIIMYIAKAIAEMMKPMINILNSLYKKLLSSILRSSPGIMLVRMAIDKFGAAAVRNSWYDPKQVSEHVLSGYTKPLRVKDWDRALVEFTAAMLLDEESNTKPELSKRLNEISCPVLIVTGDSDRLVPSWNAERLSRVIPGASFEVIKQCGHLPHEEKMEEFISIVENFLRRLAGDSNKQDLQPVT