Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90800.t1 | AES63039.2 | 90.1 | 283 | 5 | 1 | 1 | 260 | 39 | 321 | 2.30E-138 | 501.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90800.t1 | Q94JV5 | 69.9 | 272 | 58 | 2 | 5 | 253 | 36 | 306 | 1.4e-104 | 380.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90800.t1 | G7IF23 | 90.1 | 283 | 5 | 1 | 1 | 260 | 39 | 321 | 1.7e-138 | 501.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052253 | MS.gene90800 | 0.807294 | 5.42E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene90800 | 0.801455 | 8.93E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90800.t1 | MTR_1g116080 | 90.106 | 283 | 5 | 1 | 1 | 260 | 39 | 321 | 0.0 | 518 |
| MS.gene90800.t1 | MTR_1g116080 | 87.705 | 244 | 7 | 1 | 1 | 221 | 40 | 283 | 3.56e-156 | 436 |
| MS.gene90800.t1 | MTR_3g104850 | 37.234 | 188 | 113 | 3 | 63 | 250 | 110 | 292 | 1.10e-39 | 140 |
| MS.gene90800.t1 | MTR_3g104850 | 37.234 | 188 | 113 | 3 | 63 | 250 | 160 | 342 | 2.77e-39 | 140 |
| MS.gene90800.t1 | MTR_2g086600 | 24.232 | 293 | 170 | 12 | 5 | 256 | 8 | 289 | 2.37e-16 | 77.4 |
| MS.gene90800.t1 | MTR_4g093580 | 24.887 | 221 | 145 | 4 | 37 | 242 | 16 | 230 | 6.26e-12 | 64.3 |
| MS.gene90800.t1 | MTR_4g093570 | 25.106 | 235 | 153 | 5 | 23 | 242 | 147 | 373 | 6.45e-12 | 65.1 |
| MS.gene90800.t1 | MTR_4g093580 | 24.887 | 221 | 145 | 4 | 37 | 242 | 128 | 342 | 1.19e-11 | 64.3 |
| MS.gene90800.t1 | MTR_4g093580 | 24.887 | 221 | 145 | 4 | 37 | 242 | 161 | 375 | 1.63e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90800.t1 | AT4G08790 | 68.929 | 280 | 60 | 3 | 1 | 254 | 29 | 307 | 1.13e-138 | 392 |
| MS.gene90800.t1 | AT5G12040 | 36.022 | 186 | 112 | 3 | 69 | 250 | 172 | 354 | 1.60e-37 | 135 |
| MS.gene90800.t1 | AT5G12040 | 42.149 | 121 | 65 | 2 | 69 | 185 | 172 | 291 | 1.13e-27 | 108 |
| MS.gene90800.t1 | AT2G27450 | 26.027 | 219 | 137 | 9 | 52 | 256 | 4 | 211 | 8.01e-15 | 72.0 |
| MS.gene90800.t1 | AT3G44310 | 31.507 | 146 | 73 | 6 | 117 | 243 | 46 | 183 | 2.43e-11 | 62.4 |
| MS.gene90800.t1 | AT3G44310 | 31.507 | 146 | 73 | 6 | 117 | 243 | 46 | 183 | 2.43e-11 | 62.4 |
Find 58 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGGATGGACCTATTA+TGG | 0.195841 | 1.4:-88099331 | MS.gene90800:CDS |
| ACGAGAGCAGGTGGAGAAAT+TGG | 0.233932 | 1.4:+88099482 | None:intergenic |
| CTTGGAGGCTTTCAAGAAAA+AGG | 0.272049 | 1.4:-88098754 | MS.gene90800:CDS |
| GACAGTCCTATTGGGCGTTT+GGG | 0.332728 | 1.4:-88097249 | MS.gene90800:CDS |
| AGACAGTCCTATTGGGCGTT+TGG | 0.340805 | 1.4:-88097250 | MS.gene90800:CDS |
| CACATTGATTATCGATCCTT+GGG | 0.353661 | 1.4:-88096545 | MS.gene90800:CDS |
| AGGTTTGATGTGGATGTTCC+TGG | 0.357362 | 1.4:-88097701 | MS.gene90800:CDS |
| AATTAGTATTGCTCAACCTT+TGG | 0.358871 | 1.4:-88099346 | MS.gene90800:intron |
| CAAATGATTACCTTAGCAAT+AGG | 0.366454 | 1.4:+88095983 | None:intergenic |
| GTTGCAGTAGACAGTCCTAT+TGG | 0.386112 | 1.4:-88097258 | MS.gene90800:CDS |
| AAAGGAAGCCATTTGACTTC+TGG | 0.391324 | 1.4:-88095799 | MS.gene90800:CDS |
| GAGCAGTATTGGTCCATAAT+AGG | 0.397134 | 1.4:+88099318 | None:intergenic |
| CTAAGGCCCAAACGCCCAAT+AGG | 0.406011 | 1.4:+88097243 | None:intergenic |
| GATGCAGAGAGTCAAGTATT+TGG | 0.408938 | 1.4:-88098783 | MS.gene90800:intron |
| GTTTCAGATCGTTTGTCTAC+GGG | 0.424933 | 1.4:-88096061 | MS.gene90800:intron |
| TTGCAGTAGACAGTCCTATT+GGG | 0.433163 | 1.4:-88097257 | MS.gene90800:CDS |
| ACACATTGATTATCGATCCT+TGG | 0.433778 | 1.4:-88096546 | MS.gene90800:CDS |
| AGTGACTGGTGAAGCACATT+GGG | 0.449806 | 1.4:-88096991 | MS.gene90800:CDS |
| TGTTTCAGATCGTTTGTCTA+CGG | 0.457934 | 1.4:-88096062 | MS.gene90800:intron |
| ACCAATACTGCTCTTTAGCC+AGG | 0.458330 | 1.4:-88099308 | MS.gene90800:intron |
| TACTTTGACAAGACGAGAGC+AGG | 0.460604 | 1.4:+88099470 | None:intergenic |
| AGTATTTGGTTGTCACTTGG+AGG | 0.473114 | 1.4:-88098769 | MS.gene90800:CDS |
| ACTGTTGTTGGTCGCTTACC+AGG | 0.475755 | 1.4:-88096520 | MS.gene90800:intron |
| GGCAACTCGGACTGAATTAG+TGG | 0.475966 | 1.4:+88099539 | None:intergenic |
| GCAGCTTTCCAGAAGTCAAA+TGG | 0.488007 | 1.4:+88095791 | None:intergenic |
| ATGTGGATGTTCCTGGTGGA+AGG | 0.489621 | 1.4:-88097694 | MS.gene90800:CDS |
| GTGCATTGTCCAGATACTAT+TGG | 0.490967 | 1.4:-88097033 | MS.gene90800:intron |
| TCAAGTATTTGGTTGTCACT+TGG | 0.491926 | 1.4:-88098772 | MS.gene90800:CDS |
| ACCTGGCTAAAGAGCAGTAT+TGG | 0.506049 | 1.4:+88099307 | None:intergenic |
| GTCATAGCTGCTGCACAAGC+TGG | 0.511906 | 1.4:-88096601 | MS.gene90800:CDS |
| AGTATTGCTCAACCTTTGGA+TGG | 0.516840 | 1.4:-88099342 | MS.gene90800:CDS |
| ATTGGAAGCGAGGTCGGTGA+TGG | 0.517816 | 1.4:+88099500 | None:intergenic |
| CAGTTGTTGCGTTTCCAACA+TGG | 0.520574 | 1.4:-88097186 | MS.gene90800:CDS |
| CGCAACAACTGATAAAGCTC+AGG | 0.529790 | 1.4:+88097198 | None:intergenic |
| CTAATACCTGTGCTCCATGT+TGG | 0.546597 | 1.4:+88097172 | None:intergenic |
| TCATTTGAGCTGCGGCAACT+CGG | 0.547963 | 1.4:+88099526 | None:intergenic |
| TCGTTTGTCTACGGGAATTG+TGG | 0.555672 | 1.4:-88096053 | MS.gene90800:CDS |
| TCAAATCATAGCAAACACTA+AGG | 0.560660 | 1.4:+88097226 | None:intergenic |
| AGAGAAGATGCCTATTGCTA+AGG | 0.563526 | 1.4:-88095993 | MS.gene90800:intron |
| AATGACAAAAGAGAAAGTTA+TGG | 0.563585 | 1.4:-88096571 | MS.gene90800:CDS |
| GCGTTTCCAACATGGAGCAC+AGG | 0.566309 | 1.4:-88097178 | MS.gene90800:intron |
| GGAGAAATTGGAAGCGAGGT+CGG | 0.567271 | 1.4:+88099494 | None:intergenic |
| GCAGCATTCACTAAAGTGAC+TGG | 0.570698 | 1.4:-88097005 | MS.gene90800:CDS |
| GTCACTTTAGTGAATGCTGC+GGG | 0.582925 | 1.4:+88097008 | None:intergenic |
| AAGTGACTGGTGAAGCACAT+TGG | 0.586083 | 1.4:-88096992 | MS.gene90800:CDS |
| TGTGGATGTTCCTGGTGGAA+GGG | 0.603877 | 1.4:-88097693 | MS.gene90800:CDS |
| CATGTTGTTGTAGATGACAC+TGG | 0.606125 | 1.4:-88098703 | MS.gene90800:CDS |
| TTTGACAAGACGAGAGCAGG+TGG | 0.616133 | 1.4:+88099473 | None:intergenic |
| TCTTTATATACCCTTCCACC+AGG | 0.630907 | 1.4:+88097683 | None:intergenic |
| AGGTGGAGAAATTGGAAGCG+AGG | 0.646802 | 1.4:+88099490 | None:intergenic |
| TCCATAATAGGTCCATCCAA+AGG | 0.658806 | 1.4:+88099330 | None:intergenic |
| AGTCACTTTAGTGAATGCTG+CGG | 0.666530 | 1.4:+88097007 | None:intergenic |
| TGTGTATTAAACAAATGTTG+AGG | 0.680661 | 1.4:+88098724 | None:intergenic |
| ACATTGATTATCGATCCTTG+GGG | 0.682126 | 1.4:-88096544 | MS.gene90800:CDS |
| GATGGATGTCATTTGAGCTG+CGG | 0.692126 | 1.4:+88099518 | None:intergenic |
| CATTGATTATCGATCCTTGG+GGG | 0.696086 | 1.4:-88096543 | MS.gene90800:CDS |
| TTTGATGTGGATGTTCCTGG+TGG | 0.706744 | 1.4:-88097698 | MS.gene90800:CDS |
| ATGTTGTTGTAGATGACACT+GGG | 0.710242 | 1.4:-88098702 | MS.gene90800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAATTAATTAAA+AGG | + | chr1.4:88095935-88095954 | None:intergenic | 0.0% |
| !! | TATATATATATATATTAATA+AGG | + | chr1.4:88096167-88096186 | None:intergenic | 0.0% |
| !!! | TTTCAATTAATTTTATTTGA+AGG | - | chr1.4:88097603-88097622 | MS.gene90800:intron | 10.0% |
| !! | AAAATTTGAATAGTAAATGT+TGG | + | chr1.4:88098670-88098689 | None:intergenic | 15.0% |
| !! | TAATTGAAAAACAATTAACT+GGG | + | chr1.4:88097384-88097403 | None:intergenic | 15.0% |
| !! | AACATATAGCATAAGTTATT+TGG | + | chr1.4:88097524-88097543 | None:intergenic | 20.0% |
| !! | AATTGAAAAACAATTAACTG+GGG | + | chr1.4:88097383-88097402 | None:intergenic | 20.0% |
| !! | ACATATAGCATAAGTTATTT+GGG | + | chr1.4:88097523-88097542 | None:intergenic | 20.0% |
| !! | CTAATTGAAAAACAATTAAC+TGG | + | chr1.4:88097385-88097404 | None:intergenic | 20.0% |
| !! | TAAAGAAGAGTAAAAAAAGA+CGG | + | chr1.4:88099225-88099244 | None:intergenic | 20.0% |
| !! | TTCATATCACATATAATTGA+AGG | + | chr1.4:88097977-88097996 | None:intergenic | 20.0% |
| !!! | AAAAATGAGAAGTTTTGATT+AGG | + | chr1.4:88097748-88097767 | None:intergenic | 20.0% |
| !!! | ATATATCAGCATATATTTTG+AGG | - | chr1.4:88096419-88096438 | MS.gene90800:intron | 20.0% |
| !!! | TTTTCGGAAGAAAAAAAAAA+GGG | + | chr1.4:88097271-88097290 | None:intergenic | 20.0% |
| !!! | TTTTTTGGGATAAAGAATTA+GGG | + | chr1.4:88097411-88097430 | None:intergenic | 20.0% |
| ! | AACACTTATCTATGATATGA+AGG | - | chr1.4:88098000-88098019 | MS.gene90800:intron | 25.0% |
| ! | AATGACAAAAGAGAAAGTTA+TGG | - | chr1.4:88098753-88098772 | MS.gene90800:CDS | 25.0% |
| ! | ACCACTAAAAAAAACTTCAT+TGG | + | chr1.4:88099130-88099149 | None:intergenic | 25.0% |
| ! | AGTAAGAATATACATGAAGA+TGG | + | chr1.4:88098474-88098493 | None:intergenic | 25.0% |
| ! | ATTGAAAAACAATTAACTGG+GGG | + | chr1.4:88097382-88097401 | None:intergenic | 25.0% |
| ! | GATCTTATATGATATTTCTC+AGG | + | chr1.4:88098963-88098982 | None:intergenic | 25.0% |
| ! | GATGTATGCATCAATAATAA+AGG | + | chr1.4:88099486-88099505 | None:intergenic | 25.0% |
| ! | GTAAGAATATACATGAAGAT+GGG | + | chr1.4:88098473-88098492 | None:intergenic | 25.0% |
| ! | TCATAATAAGTCAATCCAAA+CGG | - | chr1.4:88096347-88096366 | MS.gene90800:intron | 25.0% |
| ! | TGTGTATTAAACAAATGTTG+AGG | + | chr1.4:88096603-88096622 | None:intergenic | 25.0% |
| ! | TTATAGTATTAAGATCCGTT+TGG | + | chr1.4:88096365-88096384 | None:intergenic | 25.0% |
| ! | TTCTTAATCTAATGTGTGTT+TGG | - | chr1.4:88097204-88097223 | MS.gene90800:CDS | 25.0% |
| !! | AGGATATTGTTTTCATATCT+TGG | - | chr1.4:88098020-88098039 | MS.gene90800:intron | 25.0% |
| !! | ATCCTAAACAGCATATTTTA+AGG | + | chr1.4:88098253-88098272 | None:intergenic | 25.0% |
| !! | CAGTTAAAGTTTTCAAATGT+CGG | - | chr1.4:88097856-88097875 | MS.gene90800:intron | 25.0% |
| !! | GAAAGTAATTTTACAGAATC+AGG | - | chr1.4:88097662-88097681 | MS.gene90800:intron | 25.0% |
| !! | GATAAAGTTAATAGTCTTAC+AGG | + | chr1.4:88096677-88096696 | None:intergenic | 25.0% |
| !! | GTTTTCGGAAGAAAAAAAAA+AGG | + | chr1.4:88097272-88097291 | None:intergenic | 25.0% |
| !! | TCTTTCTGTTTGTCTTATTA+TGG | - | chr1.4:88097567-88097586 | MS.gene90800:intron | 25.0% |
| !! | TGCTTTTCTGCTTAAAATAT+GGG | - | chr1.4:88098185-88098204 | MS.gene90800:intron | 25.0% |
| !!! | AGAAGTTTTGATTAGGATTA+AGG | + | chr1.4:88097741-88097760 | None:intergenic | 25.0% |
| !!! | GTTTTTTGGGATAAAGAATT+AGG | + | chr1.4:88097412-88097431 | None:intergenic | 25.0% |
| !!! | TCCAATGAAGTTTTTTTTAG+TGG | - | chr1.4:88099126-88099145 | MS.gene90800:intron | 25.0% |
| !!! | TCCTAAACAGCATATTTTAA+GGG | + | chr1.4:88098252-88098271 | None:intergenic | 25.0% |
| !!! | TTGCTTTTCTGCTTAAAATA+TGG | - | chr1.4:88098184-88098203 | MS.gene90800:intron | 25.0% |
| !!! | TTTTATTTGAAGGTTTGATG+TGG | - | chr1.4:88097613-88097632 | MS.gene90800:intron | 25.0% |
| AAAAAAAGACGGTATCATTG+TGG | + | chr1.4:88099214-88099233 | None:intergenic | 30.0% | |
| AACTCAATATTAACCGAGTA+AGG | + | chr1.4:88096446-88096465 | None:intergenic | 30.0% | |
| AATTAGTATTGCTCAACCTT+TGG | - | chr1.4:88095978-88095997 | MS.gene90800:intron | 30.0% | |
| AATTTATCCTCAAAGCAGAA+AGG | - | chr1.4:88097036-88097055 | MS.gene90800:intron | 30.0% | |
| ATTTCACCCAAGAAAAATAG+AGG | - | chr1.4:88097792-88097811 | MS.gene90800:intron | 30.0% | |
| ATTTGATAAAAGCCGTAACA+TGG | - | chr1.4:88097356-88097375 | MS.gene90800:intron | 30.0% | |
| CAAATGACAATGAATGTGTT+TGG | + | chr1.4:88097341-88097360 | None:intergenic | 30.0% | |
| CAAATGATTACCTTAGCAAT+AGG | + | chr1.4:88099344-88099363 | None:intergenic | 30.0% | |
| CACTCTAGCTGATTAAATTT+GGG | + | chr1.4:88097444-88097463 | None:intergenic | 30.0% | |
| GATTTAATGAATGCCTTATC+AGG | - | chr1.4:88098701-88098720 | MS.gene90800:CDS | 30.0% | |
| TAAGACAAACAGAAAGAAGT+TGG | + | chr1.4:88097564-88097583 | None:intergenic | 30.0% | |
| TAGGATATTTACTCTTGACA+TGG | - | chr1.4:88097685-88097704 | MS.gene90800:CDS | 30.0% | |
| TATGAGTCTGTTTGGATAAA+TGG | - | chr1.4:88096073-88096092 | MS.gene90800:intron | 30.0% | |
| TCAAATCATAGCAAACACTA+AGG | + | chr1.4:88098101-88098120 | None:intergenic | 30.0% | |
| TCACTCTAGCTGATTAAATT+TGG | + | chr1.4:88097445-88097464 | None:intergenic | 30.0% | |
| TTTCACCCAAGAAAAATAGA+GGG | - | chr1.4:88097793-88097812 | MS.gene90800:intron | 30.0% | |
| ! | GTAATTTTACAGAATCAGGT+AGG | - | chr1.4:88097666-88097685 | MS.gene90800:CDS | 30.0% |
| ! | TAGTTGGATTTACTGTTTTG+AGG | + | chr1.4:88096989-88097008 | None:intergenic | 30.0% |
| !! | CCTAAACAGCATATTTTAAG+GGG | + | chr1.4:88098251-88098270 | None:intergenic | 30.0% |
| !! | GAGTTGATAAACAAGTCAAT+AGG | + | chr1.4:88097501-88097520 | None:intergenic | 30.0% |
| !! | TATATTTTGAGGACCTTACT+CGG | - | chr1.4:88096430-88096449 | MS.gene90800:intron | 30.0% |
| !! | TTTCCATCTGAGTATTGATT+TGG | - | chr1.4:88096712-88096731 | MS.gene90800:intron | 30.0% |
| !!! | CTATTTTGACTATCATTACG+AGG | + | chr1.4:88098928-88098947 | None:intergenic | 30.0% |
| !!! | TGGGTTTTGAGTTGTTTTTT+GGG | + | chr1.4:88097425-88097444 | None:intergenic | 30.0% |
| !!! | TTGGGTTTTGAGTTGTTTTT+TGG | + | chr1.4:88097426-88097445 | None:intergenic | 30.0% |
| AAATGATCCTTTCTGCTTTG+AGG | + | chr1.4:88097046-88097065 | None:intergenic | 35.0% | |
| AACAAGTATTACCGCTATAG+CGG | - | chr1.4:88097473-88097492 | MS.gene90800:intron | 35.0% | |
| AACATAAGCCTTTGTAAAGG+TGG | + | chr1.4:88096314-88096333 | None:intergenic | 35.0% | |
| AAGATCATATGTATGAGCTG+AGG | - | chr1.4:88098977-88098996 | MS.gene90800:intron | 35.0% | |
| ACACCAAATCAATACTCAGA+TGG | + | chr1.4:88096718-88096737 | None:intergenic | 35.0% | |
| ACATGGTATCAAGGCTAAAT+GGG | - | chr1.4:88097702-88097721 | MS.gene90800:CDS | 35.0% | |
| ACCAATACTAGAGAATGGAA+TGG | - | chr1.4:88099383-88099402 | MS.gene90800:intron | 35.0% | |
| ACTATGAGCTTATTGACGTA+AGG | + | chr1.4:88096140-88096159 | None:intergenic | 35.0% | |
| AGAATAAAAGCAAGCAAACC+TGG | + | chr1.4:88096037-88096056 | None:intergenic | 35.0% | |
| AGTTGTTAGAAACGTTAGTG+TGG | + | chr1.4:88098642-88098661 | None:intergenic | 35.0% | |
| ATCATCTCCAGTGAAAAAAC+TGG | - | chr1.4:88098213-88098232 | MS.gene90800:intron | 35.0% | |
| ATGTTGTTGTAGATGACACT+GGG | - | chr1.4:88096622-88096641 | MS.gene90800:intron | 35.0% | |
| GCTAACATAAGCCTTTGTAA+AGG | + | chr1.4:88096317-88096336 | None:intergenic | 35.0% | |
| GCTGATATATAGACACTGTT+TGG | + | chr1.4:88096409-88096428 | None:intergenic | 35.0% | |
| GGAGAGTTGAAGAAAGTAAT+TGG | + | chr1.4:88098621-88098640 | None:intergenic | 35.0% | |
| GTTCATGATATGAGTCTGTT+TGG | - | chr1.4:88096065-88096084 | MS.gene90800:intron | 35.0% | |
| TCAAGTATTTGGTTGTCACT+TGG | - | chr1.4:88096552-88096571 | MS.gene90800:CDS | 35.0% | |
| TCCATTCCATTCTCTAGTAT+TGG | + | chr1.4:88099387-88099406 | None:intergenic | 35.0% | |
| TGCATGAGAAGAATGAGAAA+TGG | - | chr1.4:88096888-88096907 | MS.gene90800:intron | 35.0% | |
| TGTTTCAGATCGTTTGTCTA+CGG | - | chr1.4:88099262-88099281 | MS.gene90800:intron | 35.0% | |
| TTAACCAACCACCTTTACAA+AGG | - | chr1.4:88096303-88096322 | MS.gene90800:intron | 35.0% | |
| TTACGAGGAAGAAAGAAACA+AGG | + | chr1.4:88098913-88098932 | None:intergenic | 35.0% | |
| TTACTCTTGACATGGTATCA+AGG | - | chr1.4:88097693-88097712 | MS.gene90800:CDS | 35.0% | |
| TTCTGCTTAAAATATGGGAG+TGG | - | chr1.4:88098190-88098209 | MS.gene90800:intron | 35.0% | |
| TTGAAGGAAACGTATATCGT+TGG | + | chr1.4:88097961-88097980 | None:intergenic | 35.0% | |
| TTTCCAGTAAGGTTCTTTCT+AGG | + | chr1.4:88097826-88097845 | None:intergenic | 35.0% | |
| TTTCCTAGAAAGAACCTTAC+TGG | - | chr1.4:88097820-88097839 | MS.gene90800:intron | 35.0% | |
| ! | AAAATGTTGCTTCTGTGTCA+TGG | + | chr1.4:88097179-88097198 | None:intergenic | 35.0% |
| ! | ACACATTGATTATCGATCCT+TGG | - | chr1.4:88098778-88098797 | MS.gene90800:CDS | 35.0% |
| ! | ACATTGATTATCGATCCTTG+GGG | - | chr1.4:88098780-88098799 | MS.gene90800:intron | 35.0% |
| ! | AGTAAGGTTCTTTCTAGGAA+AGG | + | chr1.4:88097821-88097840 | None:intergenic | 35.0% |
| ! | AGTTGGTTTCTGATTTCAAG+AGG | + | chr1.4:88097547-88097566 | None:intergenic | 35.0% |
| ! | CACATTGATTATCGATCCTT+GGG | - | chr1.4:88098779-88098798 | MS.gene90800:CDS | 35.0% |
| ! | CAGGTGTATTTTTCTGTAAG+TGG | + | chr1.4:88096658-88096677 | None:intergenic | 35.0% |
| ! | CCCCTTAAAATATGCTGTTT+AGG | - | chr1.4:88098248-88098267 | MS.gene90800:intron | 35.0% |
| ! | GAAGTATCAAGTTTCTTACC+TGG | + | chr1.4:88098825-88098844 | None:intergenic | 35.0% |
| !! | AAACAGCATATTTTAAGGGG+AGG | + | chr1.4:88098248-88098267 | None:intergenic | 35.0% |
| !! | AAGGTTCCCTCTATTTTTCT+TGG | + | chr1.4:88097802-88097821 | None:intergenic | 35.0% |
| !! | AGGTTCCCTCTATTTTTCTT+GGG | + | chr1.4:88097801-88097820 | None:intergenic | 35.0% |
| !! | TTCCATTCTCTAGTATTGGT+CGG | + | chr1.4:88099383-88099402 | None:intergenic | 35.0% |
| !!! | ATTGTCTCCAGTTTTTTCAC+TGG | + | chr1.4:88098223-88098242 | None:intergenic | 35.0% |
| !!! | CATATCTTGGTGATGTTTTC+AGG | - | chr1.4:88098033-88098052 | MS.gene90800:intron | 35.0% |
| AAGATGGGAATGATGAAAGC+AGG | + | chr1.4:88098458-88098477 | None:intergenic | 40.0% | |
| ACATAAGAGCTTATAGCACG+AGG | - | chr1.4:88096114-88096133 | MS.gene90800:intron | 40.0% | |
| ACCTTTGGATGGACCTATTA+TGG | - | chr1.4:88095993-88096012 | MS.gene90800:intron | 40.0% | |
| ACGAAGAAGTAGAGTAAGAG+AGG | - | chr1.4:88096860-88096879 | MS.gene90800:intron | 40.0% | |
| ACGGTTGGAACAAGAGATTA+TGG | - | chr1.4:88096835-88096854 | MS.gene90800:intron | 40.0% | |
| AGAAGAATGAGAAATGGAGC+GGG | - | chr1.4:88096894-88096913 | MS.gene90800:intron | 40.0% | |
| AGAGAAGATGCCTATTGCTA+AGG | - | chr1.4:88099331-88099350 | MS.gene90800:CDS | 40.0% | |
| AGTATTGCTCAACCTTTGGA+TGG | - | chr1.4:88095982-88096001 | MS.gene90800:intron | 40.0% | |
| ATCCAACTACTCTGTGTGTT+TGG | - | chr1.4:88097000-88097019 | MS.gene90800:CDS | 40.0% | |
| CATGTTGTTGTAGATGACAC+TGG | - | chr1.4:88096621-88096640 | MS.gene90800:intron | 40.0% | |
| CGAAGAAGTAGAGTAAGAGA+GGG | - | chr1.4:88096861-88096880 | MS.gene90800:intron | 40.0% | |
| CTTCCTTTGCTGAAACGAAA+AGG | + | chr1.4:88099513-88099532 | None:intergenic | 40.0% | |
| CTTGGAGGCTTTCAAGAAAA+AGG | - | chr1.4:88096570-88096589 | MS.gene90800:CDS | 40.0% | |
| GAACCTTACTGGAAAATCAG+AGG | - | chr1.4:88097831-88097850 | MS.gene90800:intron | 40.0% | |
| GACATGGTATCAAGGCTAAA+TGG | - | chr1.4:88097701-88097720 | MS.gene90800:CDS | 40.0% | |
| GAGAAGAATGAGAAATGGAG+CGG | - | chr1.4:88096893-88096912 | MS.gene90800:intron | 40.0% | |
| GAGGAAGAAAGAAACAAGGA+AGG | + | chr1.4:88098909-88098928 | None:intergenic | 40.0% | |
| GATGCAGAGAGTCAAGTATT+TGG | - | chr1.4:88096541-88096560 | MS.gene90800:CDS | 40.0% | |
| GCAACACAAACGCAAGTAAA+CGG | - | chr1.4:88096816-88096835 | MS.gene90800:intron | 40.0% | |
| GTGCATTGTCCAGATACTAT+TGG | - | chr1.4:88098291-88098310 | MS.gene90800:intron | 40.0% | |
| GTTTCAGATCGTTTGTCTAC+GGG | - | chr1.4:88099263-88099282 | MS.gene90800:intron | 40.0% | |
| TAAGCCTTTGTAAAGGTGGT+TGG | + | chr1.4:88096310-88096329 | None:intergenic | 40.0% | |
| TCCAACTACTCTGTGTGTTT+GGG | - | chr1.4:88097001-88097020 | MS.gene90800:CDS | 40.0% | |
| TCCATAATAGGTCCATCCAA+AGG | + | chr1.4:88095997-88096016 | None:intergenic | 40.0% | |
| TCTTTATATACCCTTCCACC+AGG | + | chr1.4:88097644-88097663 | None:intergenic | 40.0% | |
| TGTAATACACCCCACTTAGT+GGG | + | chr1.4:88099076-88099095 | None:intergenic | 40.0% | |
| TTGCAGTAGACAGTCCTATT+GGG | - | chr1.4:88098067-88098086 | MS.gene90800:intron | 40.0% | |
| ! | AAAGGAAGCCATTTGACTTC+TGG | - | chr1.4:88099525-88099544 | MS.gene90800:CDS | 40.0% |
| ! | AGTATTTGGTTGTCACTTGG+AGG | - | chr1.4:88096555-88096574 | MS.gene90800:CDS | 40.0% |
| ! | AGTCACTTTAGTGAATGCTG+CGG | + | chr1.4:88098320-88098339 | None:intergenic | 40.0% |
| ! | CATTGATTATCGATCCTTGG+GGG | - | chr1.4:88098781-88098800 | MS.gene90800:intron | 40.0% |
| ! | CTGACTATGTCGTTTCTAAG+AGG | + | chr1.4:88097885-88097904 | None:intergenic | 40.0% |
| ! | GAACCTCTGATTTTCCAGTA+AGG | + | chr1.4:88097837-88097856 | None:intergenic | 40.0% |
| ! | GGAGCTCTCAATTGTGTTTT+CGG | + | chr1.4:88097287-88097306 | None:intergenic | 40.0% |
| ! | GTACCTTTTCGTTTCAGCAA+AGG | - | chr1.4:88099507-88099526 | MS.gene90800:CDS | 40.0% |
| !! | GAGCAGTATTGGTCCATAAT+AGG | + | chr1.4:88096009-88096028 | None:intergenic | 40.0% |
| !! | TCCATTCTCTAGTATTGGTC+GGG | + | chr1.4:88099382-88099401 | None:intergenic | 40.0% |
| AACAGTTTGAATCTCCAGCG+AGG | + | chr1.4:88099164-88099183 | None:intergenic | 45.0% | |
| AAGAATGAGAAATGGAGCGG+GGG | - | chr1.4:88096896-88096915 | MS.gene90800:intron | 45.0% | |
| AAGAGCTCCTAACCTCTGTA+TGG | + | chr1.4:88097308-88097327 | None:intergenic | 45.0% | |
| AAGTGACTGGTGAAGCACAT+TGG | - | chr1.4:88098332-88098351 | MS.gene90800:intron | 45.0% | |
| ACAGGACAGCAAAAACAACC+AGG | - | chr1.4:88099044-88099063 | MS.gene90800:intron | 45.0% | |
| ACCAATACTGCTCTTTAGCC+AGG | - | chr1.4:88096016-88096035 | MS.gene90800:CDS | 45.0% | |
| ACCCAAACACACAGAGTAGT+TGG | + | chr1.4:88097005-88097024 | None:intergenic | 45.0% | |
| ACCCGACCAATACTAGAGAA+TGG | - | chr1.4:88099378-88099397 | MS.gene90800:intron | 45.0% | |
| ACCTGGCTAAAGAGCAGTAT+TGG | + | chr1.4:88096020-88096039 | None:intergenic | 45.0% | |
| AGGTTTGATGTGGATGTTCC+TGG | - | chr1.4:88097623-88097642 | MS.gene90800:intron | 45.0% | |
| AGTGACTGGTGAAGCACATT+GGG | - | chr1.4:88098333-88098352 | MS.gene90800:intron | 45.0% | |
| ATTAACTGGGGGCCATGTTA+CGG | + | chr1.4:88097371-88097390 | None:intergenic | 45.0% | |
| CAATTGAGAGCTCCATACAG+AGG | - | chr1.4:88097293-88097312 | MS.gene90800:intron | 45.0% | |
| CACAAACGCAAGTAAACGGT+TGG | - | chr1.4:88096820-88096839 | MS.gene90800:intron | 45.0% | |
| CACTAAGTGGGGTGTATTAC+AGG | - | chr1.4:88099075-88099094 | MS.gene90800:intron | 45.0% | |
| CAGTTGTTGCGTTTCCAACA+TGG | - | chr1.4:88098138-88098157 | MS.gene90800:intron | 45.0% | |
| CCTAGCAATGCTTCTCTTCT+CGG | - | chr1.4:88098416-88098435 | MS.gene90800:intron | 45.0% | |
| CGCAACAACTGATAAAGCTC+AGG | + | chr1.4:88098129-88098148 | None:intergenic | 45.0% | |
| CTAATACCTGTGCTCCATGT+TGG | + | chr1.4:88098155-88098174 | None:intergenic | 45.0% | |
| CTGTAATACACCCCACTTAG+TGG | + | chr1.4:88099077-88099096 | None:intergenic | 45.0% | |
| GAAGAATGAGAAATGGAGCG+GGG | - | chr1.4:88096895-88096914 | MS.gene90800:intron | 45.0% | |
| GCAGCATTCACTAAAGTGAC+TGG | - | chr1.4:88098319-88098338 | MS.gene90800:intron | 45.0% | |
| GCAGCTTTCCAGAAGTCAAA+TGG | + | chr1.4:88099536-88099555 | None:intergenic | 45.0% | |
| GTTGCAGTAGACAGTCCTAT+TGG | - | chr1.4:88098066-88098085 | MS.gene90800:intron | 45.0% | |
| TACTTTGACAAGACGAGAGC+AGG | + | chr1.4:88095857-88095876 | None:intergenic | 45.0% | |
| TCGTTTGTCTACGGGAATTG+TGG | - | chr1.4:88099271-88099290 | MS.gene90800:intron | 45.0% | |
| TTTGATGTGGATGTTCCTGG+TGG | - | chr1.4:88097626-88097645 | MS.gene90800:intron | 45.0% | |
| ! | GATGGATGTCATTTGAGCTG+CGG | + | chr1.4:88095809-88095828 | None:intergenic | 45.0% |
| ! | GTCACTTTAGTGAATGCTGC+GGG | + | chr1.4:88098319-88098338 | None:intergenic | 45.0% |
| !!! | CTTGGTGATGTTTTCAGGCA+AGG | - | chr1.4:88098038-88098057 | MS.gene90800:intron | 45.0% |
| ACACCCCACTTAGTGGGAAA+AGG | + | chr1.4:88099070-88099089 | None:intergenic | 50.0% | |
| ACGAGAGCAGGTGGAGAAAT+TGG | + | chr1.4:88095845-88095864 | None:intergenic | 50.0% | |
| ACTGTTGTTGGTCGCTTACC+AGG | - | chr1.4:88098804-88098823 | MS.gene90800:intron | 50.0% | |
| AGACAGTCCTATTGGGCGTT+TGG | - | chr1.4:88098074-88098093 | MS.gene90800:intron | 50.0% | |
| AGGTGGAGAAATTGGAAGCG+AGG | + | chr1.4:88095837-88095856 | None:intergenic | 50.0% | |
| ATGGCTTACCTCAGGGAGAT+GGG | - | chr1.4:88099006-88099025 | MS.gene90800:intron | 50.0% | |
| ATGTGGATGTTCCTGGTGGA+AGG | - | chr1.4:88097630-88097649 | MS.gene90800:intron | 50.0% | |
| GACAGTCCTATTGGGCGTTT+GGG | - | chr1.4:88098075-88098094 | MS.gene90800:intron | 50.0% | |
| GAGAGCTCCATACAGAGGTT+AGG | - | chr1.4:88097298-88097317 | MS.gene90800:intron | 50.0% | |
| GCAGCAGCTATGACCTGATA+AGG | + | chr1.4:88098717-88098736 | None:intergenic | 50.0% | |
| GCCTCATATGGCTTACCTCA+GGG | - | chr1.4:88098999-88099018 | MS.gene90800:intron | 50.0% | |
| GGAGAAATTGGAAGCGAGGT+CGG | + | chr1.4:88095833-88095852 | None:intergenic | 50.0% | |
| GGCAACTCGGACTGAATTAG+TGG | + | chr1.4:88095788-88095807 | None:intergenic | 50.0% | |
| GGTGATTTCATTCTCCTCGC+TGG | - | chr1.4:88099147-88099166 | MS.gene90800:intron | 50.0% | |
| GTATGAGCTGAGGCCTCATA+TGG | - | chr1.4:88098987-88099006 | MS.gene90800:intron | 50.0% | |
| GTCAATAGGCTCCGCTATAG+CGG | + | chr1.4:88097487-88097506 | None:intergenic | 50.0% | |
| GTGGGGTGTATTACAGGAGA+AGG | - | chr1.4:88099081-88099100 | MS.gene90800:intron | 50.0% | |
| TATGGCTTACCTCAGGGAGA+TGG | - | chr1.4:88099005-88099024 | MS.gene90800:intron | 50.0% | |
| TCATTTGAGCTGCGGCAACT+CGG | + | chr1.4:88095801-88095820 | None:intergenic | 50.0% | |
| TCCCTGAGGTAAGCCATATG+AGG | + | chr1.4:88099003-88099022 | None:intergenic | 50.0% | |
| TGTGGATGTTCCTGGTGGAA+GGG | - | chr1.4:88097631-88097650 | MS.gene90800:intron | 50.0% | |
| TTTGACAAGACGAGAGCAGG+TGG | + | chr1.4:88095854-88095873 | None:intergenic | 50.0% | |
| ! | AGGCCTTTTCCCACTAAGTG+GGG | - | chr1.4:88099064-88099083 | MS.gene90800:intron | 50.0% |
| ! | CAGGCCTTTTCCCACTAAGT+GGG | - | chr1.4:88099063-88099082 | MS.gene90800:intron | 50.0% |
| ! | GGGGAAGGAGTGTGTATTAC+AGG | - | chr1.4:88099026-88099045 | MS.gene90800:intron | 50.0% |
| !! | CCGAGAAGAGAAGCATTGCT+AGG | + | chr1.4:88098419-88098438 | None:intergenic | 50.0% |
| AATGAGAAATGGAGCGGGGG+TGG | - | chr1.4:88096899-88096918 | MS.gene90800:intron | 55.0% | |
| ATGAGAAATGGAGCGGGGGT+GGG | - | chr1.4:88096900-88096919 | MS.gene90800:intron | 55.0% | |
| ATTGGAAGCGAGGTCGGTGA+TGG | + | chr1.4:88095827-88095846 | None:intergenic | 55.0% | |
| CCACTTAGTGGGAAAAGGCC+TGG | + | chr1.4:88099065-88099084 | None:intergenic | 55.0% | |
| CTAAGGCCCAAACGCCCAAT+AGG | + | chr1.4:88098084-88098103 | None:intergenic | 55.0% | |
| CTGCGGGCACCAATAGTATC+TGG | + | chr1.4:88098303-88098322 | None:intergenic | 55.0% | |
| GATCCTTGGGGGACTGTTGT+TGG | - | chr1.4:88098792-88098811 | MS.gene90800:intron | 55.0% | |
| GCGTTTCCAACATGGAGCAC+AGG | - | chr1.4:88098146-88098165 | MS.gene90800:intron | 55.0% | |
| GGCCTCATATGGCTTACCTC+AGG | - | chr1.4:88098998-88099017 | MS.gene90800:intron | 55.0% | |
| GTCATAGCTGCTGCACAAGC+TGG | - | chr1.4:88098723-88098742 | MS.gene90800:CDS | 55.0% | |
| TGGCTTACCTCAGGGAGATG+GGG | - | chr1.4:88099007-88099026 | MS.gene90800:intron | 55.0% | |
| TTACCTCAGGGAGATGGGGA+AGG | - | chr1.4:88099011-88099030 | MS.gene90800:intron | 55.0% | |
| ! | CCAGGCCTTTTCCCACTAAG+TGG | - | chr1.4:88099062-88099081 | MS.gene90800:intron | 55.0% |
| ACTCCTTCCCCATCTCCCTG+AGG | + | chr1.4:88099017-88099036 | None:intergenic | 60.0% | |
| CGACCAACAACAGTCCCCCA+AGG | + | chr1.4:88098798-88098817 | None:intergenic | 60.0% | |
| TGAGAAATGGAGCGGGGGTG+GGG | - | chr1.4:88096901-88096920 | MS.gene90800:intron | 60.0% | |
| GAGAAATGGAGCGGGGGTGG+GGG | - | chr1.4:88096902-88096921 | MS.gene90800:intron | 65.0% | |
| AATGGAGCGGGGGTGGGGGT+TGG | - | chr1.4:88096906-88096925 | MS.gene90800:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 88095781 | 88099565 | 88095781 | ID=MS.gene90800 |
| chr1.4 | mRNA | 88095781 | 88099565 | 88095781 | ID=MS.gene90800.t1;Parent=MS.gene90800 |
| chr1.4 | exon | 88099459 | 88099565 | 88099459 | ID=MS.gene90800.t1.exon1;Parent=MS.gene90800.t1 |
| chr1.4 | CDS | 88099459 | 88099565 | 88099459 | ID=cds.MS.gene90800.t1;Parent=MS.gene90800.t1 |
| chr1.4 | exon | 88099309 | 88099362 | 88099309 | ID=MS.gene90800.t1.exon2;Parent=MS.gene90800.t1 |
| chr1.4 | CDS | 88099309 | 88099362 | 88099309 | ID=cds.MS.gene90800.t1;Parent=MS.gene90800.t1 |
| chr1.4 | exon | 88098670 | 88098798 | 88098670 | ID=MS.gene90800.t1.exon3;Parent=MS.gene90800.t1 |
| chr1.4 | CDS | 88098670 | 88098798 | 88098670 | ID=cds.MS.gene90800.t1;Parent=MS.gene90800.t1 |
| chr1.4 | exon | 88097663 | 88097721 | 88097663 | ID=MS.gene90800.t1.exon4;Parent=MS.gene90800.t1 |
| chr1.4 | CDS | 88097663 | 88097721 | 88097663 | ID=cds.MS.gene90800.t1;Parent=MS.gene90800.t1 |
| chr1.4 | exon | 88097179 | 88097291 | 88097179 | ID=MS.gene90800.t1.exon5;Parent=MS.gene90800.t1 |
| chr1.4 | CDS | 88097179 | 88097291 | 88097179 | ID=cds.MS.gene90800.t1;Parent=MS.gene90800.t1 |
| chr1.4 | exon | 88096950 | 88097042 | 88096950 | ID=MS.gene90800.t1.exon6;Parent=MS.gene90800.t1 |
| chr1.4 | CDS | 88096950 | 88097042 | 88096950 | ID=cds.MS.gene90800.t1;Parent=MS.gene90800.t1 |
| chr1.4 | exon | 88096521 | 88096623 | 88096521 | ID=MS.gene90800.t1.exon7;Parent=MS.gene90800.t1 |
| chr1.4 | CDS | 88096521 | 88096623 | 88096521 | ID=cds.MS.gene90800.t1;Parent=MS.gene90800.t1 |
| chr1.4 | exon | 88095994 | 88096076 | 88095994 | ID=MS.gene90800.t1.exon8;Parent=MS.gene90800.t1 |
| chr1.4 | CDS | 88095994 | 88096076 | 88095994 | ID=cds.MS.gene90800.t1;Parent=MS.gene90800.t1 |
| chr1.4 | exon | 88095781 | 88095822 | 88095781 | ID=MS.gene90800.t1.exon9;Parent=MS.gene90800.t1 |
| chr1.4 | CDS | 88095781 | 88095822 | 88095781 | ID=cds.MS.gene90800.t1;Parent=MS.gene90800.t1 |
| Gene Sequence |
| Protein sequence |
