Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90822.t1 | P28012.1 | 100 | 222 | 0 | 0 | 1 | 222 | 1 | 222 | 1.00E-118 | 436 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90822.t1 | P28012 | 100.0 | 222 | 0 | 0 | 1 | 222 | 1 | 222 | 2.5e-121 | 436.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90822.t1 | U5TRY3 | 100.0 | 222 | 0 | 0 | 1 | 222 | 1 | 222 | 7.4e-119 | 436.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052559 | MS.gene90822 | 0.809885 | 1.52E-50 | -1.69E-46 |
| MS.gene052560 | MS.gene90822 | 0.827899 | 1.21E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90822.t1 | MTR_1g115820 | 98.198 | 222 | 4 | 0 | 1 | 222 | 1 | 222 | 1.28e-161 | 445 |
| MS.gene90822.t1 | MTR_1g115820 | 94.611 | 167 | 9 | 0 | 1 | 167 | 1 | 167 | 1.83e-116 | 329 |
| MS.gene90822.t1 | MTR_1g115840 | 62.896 | 221 | 82 | 0 | 2 | 222 | 5 | 225 | 9.75e-98 | 284 |
| MS.gene90822.t1 | MTR_1g115850 | 60.731 | 219 | 86 | 0 | 2 | 220 | 5 | 223 | 3.64e-92 | 270 |
| MS.gene90822.t1 | MTR_1g115850 | 58.850 | 226 | 86 | 1 | 2 | 220 | 5 | 230 | 3.08e-89 | 263 |
| MS.gene90822.t1 | MTR_1g115870 | 54.884 | 215 | 95 | 1 | 4 | 216 | 5 | 219 | 2.23e-80 | 240 |
| MS.gene90822.t1 | MTR_1g115890 | 52.804 | 214 | 99 | 1 | 4 | 215 | 5 | 218 | 1.01e-77 | 233 |
| MS.gene90822.t1 | MTR_1g115830 | 46.061 | 165 | 43 | 2 | 58 | 222 | 42 | 160 | 1.01e-40 | 137 |
| MS.gene90822.t1 | MTR_7g027135 | 51.128 | 133 | 63 | 1 | 48 | 178 | 7 | 139 | 1.65e-40 | 136 |
| MS.gene90822.t1 | MTR_3g093980 | 31.401 | 207 | 130 | 5 | 7 | 209 | 25 | 223 | 7.64e-14 | 68.6 |
| MS.gene90822.t1 | MTR_3g093980 | 37.500 | 104 | 61 | 2 | 7 | 110 | 5 | 104 | 5.26e-13 | 64.7 |
| MS.gene90822.t1 | MTR_3g093980 | 32.544 | 169 | 105 | 4 | 45 | 209 | 8 | 171 | 5.74e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90822.t1 | AT3G55120 | 49.048 | 210 | 107 | 0 | 4 | 213 | 15 | 224 | 3.05e-67 | 207 |
| MS.gene90822.t1 | AT5G66230 | 42.453 | 212 | 114 | 1 | 4 | 215 | 5 | 208 | 1.23e-53 | 180 |
| MS.gene90822.t1 | AT5G66220 | 42.767 | 159 | 91 | 0 | 57 | 215 | 1 | 159 | 5.33e-44 | 145 |
| MS.gene90822.t1 | AT5G05270 | 28.708 | 209 | 142 | 4 | 8 | 214 | 6 | 209 | 6.77e-13 | 65.5 |
| MS.gene90822.t1 | AT5G05270 | 28.708 | 209 | 142 | 4 | 8 | 214 | 6 | 209 | 6.77e-13 | 65.5 |
Find 66 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCACCTGATGGAATATT+AGG | 0.209322 | 1.4:+87889686 | MS.gene90822:CDS |
| CACTGCCATAGGTGTTTATT+TGG | 0.211608 | 1.4:+87888998 | MS.gene90822:CDS |
| TTGAAATCAGTTGGAACTTA+TGG | 0.230001 | 1.4:+87889578 | MS.gene90822:CDS |
| AATTAGAGGGTCAAAGATTA+GGG | 0.310626 | 1.4:+87889502 | MS.gene90822:CDS |
| CTTGATGAAGTTTCCTTCAA+TGG | 0.330932 | 1.4:-87888973 | None:intergenic |
| CCCTGATCTTAAGCGCTGTT+TGG | 0.332738 | 1.4:+87889950 | MS.gene90822:CDS |
| AACGAGGGTGCTTTCAAGAT+TGG | 0.337469 | 1.4:+87889996 | MS.gene90822:CDS |
| TAATTAGAGGGTCAAAGATT+AGG | 0.343487 | 1.4:+87889501 | MS.gene90822:CDS |
| TCATATTTCCTCGGTGGCGC+TGG | 0.355424 | 1.4:+87888936 | MS.gene90822:CDS |
| CCCTTTGAAAAGTTAATTAG+AGG | 0.361486 | 1.4:+87889488 | MS.gene90822:CDS |
| AATCACCTGATGGAATATTA+GGG | 0.365814 | 1.4:+87889687 | MS.gene90822:CDS |
| GCCAAACAGCGCTTAAGATC+AGG | 0.410390 | 1.4:-87889951 | None:intergenic |
| GCACCAGGTGGAAAATTAAC+AGG | 0.410631 | 1.4:-87889647 | None:intergenic |
| ACCGAGGAAATATGATTTGC+CGG | 0.416952 | 1.4:-87888928 | None:intergenic |
| AGATGATTTACCCTTCCATT+TGG | 0.439741 | 1.4:-87889048 | None:intergenic |
| GGCAGTTTCATCAGCAGTGT+TGG | 0.459798 | 1.4:+87889899 | MS.gene90822:CDS |
| CTCGGTGGCGCTGGGGAGAG+AGG | 0.461142 | 1.4:+87888945 | MS.gene90822:CDS |
| CATATTTCCTCGGTGGCGCT+GGG | 0.461249 | 1.4:+87888937 | MS.gene90822:CDS |
| AAATATGATTTGCCGGTGAC+CGG | 0.472992 | 1.4:-87888921 | None:intergenic |
| ACCGGAGAGGTAACCACCGC+TGG | 0.477165 | 1.4:-87888903 | None:intergenic |
| TGAGTACTCAAGGAAGGTTA+TGG | 0.487878 | 1.4:+87889538 | MS.gene90822:CDS |
| TAACCACCGCTGGGTATTCA+AGG | 0.488480 | 1.4:-87888893 | None:intergenic |
| GGATACAAGTATACCAGAAA+AGG | 0.490457 | 1.4:+87889854 | MS.gene90822:CDS |
| CCCAGCGGTGGTTACCTCTC+CGG | 0.492838 | 1.4:+87888902 | MS.gene90822:CDS |
| TGGCTTCACTAGCTGCCAAA+TGG | 0.503292 | 1.4:+87889033 | MS.gene90822:CDS |
| GTTACAGCTTAGTTTCTCTC+CGG | 0.504378 | 1.4:+87889833 | MS.gene90822:intron |
| GAGAGAGGATTGACCATTGA+AGG | 0.509487 | 1.4:+87888960 | MS.gene90822:CDS |
| CTAACCCCTAATATTCCATC+AGG | 0.511312 | 1.4:-87889692 | None:intergenic |
| ATCTTCCAAATAAACACCTA+TGG | 0.512141 | 1.4:-87889003 | None:intergenic |
| GTGGTTACCTCTCCGGTCAC+CGG | 0.524005 | 1.4:+87888909 | MS.gene90822:CDS |
| TTCACTAGCTGCCAAATGGA+AGG | 0.526249 | 1.4:+87889037 | MS.gene90822:CDS |
| CCAAACAGCGCTTAAGATCA+GGG | 0.532079 | 1.4:-87889950 | None:intergenic |
| TTCTACAGGCAATCACCTGA+TGG | 0.554083 | 1.4:+87889677 | MS.gene90822:CDS |
| GGCTGCACTCATAGAGAACA+AGG | 0.569164 | 1.4:+87889878 | MS.gene90822:CDS |
| ACCGGCAAATCATATTTCCT+CGG | 0.576452 | 1.4:+87888927 | MS.gene90822:CDS |
| TGAGTGGTCCTGAGTACTCA+AGG | 0.577740 | 1.4:+87889528 | MS.gene90822:CDS |
| CTCTCTCCCCAGCGCCACCG+AGG | 0.582911 | 1.4:-87888944 | None:intergenic |
| CTGTAGAAAACAGAGGCACC+AGG | 0.591901 | 1.4:-87889662 | None:intergenic |
| CCTTTGAAAAGTTAATTAGA+GGG | 0.595496 | 1.4:+87889489 | MS.gene90822:CDS |
| ATTACCTGCGTTGTTGAACG+AGG | 0.600190 | 1.4:+87889980 | MS.gene90822:CDS |
| TGATGTCTCTGTAAAAGTCG+AGG | 0.602205 | 1.4:-87889088 | None:intergenic |
| ATAACCTTCCTTGAGTACTC+AGG | 0.607676 | 1.4:-87889536 | None:intergenic |
| TTCATCAAGTTCACTGCCAT+AGG | 0.610295 | 1.4:+87888987 | MS.gene90822:CDS |
| GCAGTGTTGGAGACTATGAT+CGG | 0.622152 | 1.4:+87889912 | MS.gene90822:CDS |
| TCACTAGCTGCCAAATGGAA+GGG | 0.624312 | 1.4:+87889038 | MS.gene90822:CDS |
| GTGGCACACTTGAAATCAGT+TGG | 0.625898 | 1.4:+87889569 | MS.gene90822:CDS |
| GATGTCTCTGTAAAAGTCGA+GGG | 0.629213 | 1.4:-87889087 | None:intergenic |
| CCGGAGAGGTAACCACCGCT+GGG | 0.632340 | 1.4:-87888902 | None:intergenic |
| TACAAGTATACCAGAAAAGG+AGG | 0.632960 | 1.4:+87889857 | MS.gene90822:CDS |
| TGGTCCTGAGTACTCAAGGA+AGG | 0.639707 | 1.4:+87889532 | MS.gene90822:CDS |
| GGCAAATCATATTTCCTCGG+TGG | 0.648065 | 1.4:+87888930 | MS.gene90822:CDS |
| AAGGTTCTCCACAGTGATTG+CGG | 0.648293 | 1.4:-87888874 | None:intergenic |
| ATATTTCCTCGGTGGCGCTG+GGG | 0.654176 | 1.4:+87888938 | MS.gene90822:CDS |
| GCACCCTCGTTCAACAACGC+AGG | 0.670342 | 1.4:-87889984 | None:intergenic |
| TGATTTGCCGGTGACCGGAG+AGG | 0.671162 | 1.4:-87888916 | None:intergenic |
| TTATTTGGAAGATATAGCAG+TGG | 0.671898 | 1.4:+87889013 | MS.gene90822:CDS |
| GAACCTTGAATACCCAGCGG+TGG | 0.677026 | 1.4:+87888890 | MS.gene90822:CDS |
| CAAACAGCGCTTAAGATCAG+GGG | 0.682290 | 1.4:-87889949 | None:intergenic |
| TTACCTGCGTTGTTGAACGA+GGG | 0.686961 | 1.4:+87889981 | MS.gene90822:CDS |
| ATCACCTGATGGAATATTAG+GGG | 0.689762 | 1.4:+87889688 | MS.gene90822:CDS |
| TCAAAGATTAGGGAATTGAG+TGG | 0.698363 | 1.4:+87889512 | MS.gene90822:CDS |
| TAGAAAACAGAGGCACCAGG+TGG | 0.700225 | 1.4:-87889659 | None:intergenic |
| ATCAATCACCGCAATCACTG+TGG | 0.724881 | 1.4:+87888866 | MS.gene90822:CDS |
| GAAGGTTATGGAGAACTGTG+TGG | 0.734369 | 1.4:+87889550 | MS.gene90822:CDS |
| TGATTGCCTGTAGAAAACAG+AGG | 0.767471 | 1.4:-87889669 | None:intergenic |
| GGAGAACCTTGAATACCCAG+CGG | 0.782943 | 1.4:+87888887 | MS.gene90822:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCATTTAATTAATTGCA+AGG | - | chr1.4:87889154-87889173 | None:intergenic | 15.0% |
| !!! | TGATAAATTGATAATTTTGT+AGG | + | chr1.4:87889464-87889483 | MS.gene90822:intron | 15.0% |
| !!! | TTTTAATATACTAGTATTAG+TGG | - | chr1.4:87889807-87889826 | None:intergenic | 15.0% |
| !! | AATTAAAGTCTAACATACAA+CGG | + | chr1.4:87889388-87889407 | MS.gene90822:intron | 20.0% |
| !! | AGTTAAGAAACAGAATTAAT+TGG | - | chr1.4:87889729-87889748 | None:intergenic | 20.0% |
| !! | GTTAGACTTTAATTAATTCT+TGG | - | chr1.4:87889382-87889401 | None:intergenic | 20.0% |
| !!! | TTTCTTAACTATTTTAGTTG+AGG | + | chr1.4:87889739-87889758 | MS.gene90822:intron | 20.0% |
| ! | ATATACTAGTATTAGTGGAA+AGG | - | chr1.4:87889802-87889821 | None:intergenic | 25.0% |
| ! | TCAATAAGACTCATATGATT+TGG | - | chr1.4:87889347-87889366 | None:intergenic | 25.0% |
| !! | CCTCTAATTAACTTTTCAAA+GGG | - | chr1.4:87889491-87889510 | None:intergenic | 25.0% |
| !! | CCTTTGAAAAGTTAATTAGA+GGG | + | chr1.4:87889489-87889508 | MS.gene90822:CDS | 25.0% |
| !!! | CATTTTTTAACATATGAAGC+TGG | + | chr1.4:87889209-87889228 | MS.gene90822:intron | 25.0% |
| AATCACCTGATGGAATATTA+GGG | + | chr1.4:87889687-87889706 | MS.gene90822:CDS | 30.0% | |
| AATTAGAGGGTCAAAGATTA+GGG | + | chr1.4:87889502-87889521 | MS.gene90822:CDS | 30.0% | |
| ATCTTCCAAATAAACACCTA+TGG | - | chr1.4:87889006-87889025 | None:intergenic | 30.0% | |
| GTGAGTAAAAACTAGTATGA+AGG | - | chr1.4:87889278-87889297 | None:intergenic | 30.0% | |
| TAATTAGAGGGTCAAAGATT+AGG | + | chr1.4:87889501-87889520 | MS.gene90822:CDS | 30.0% | |
| TTATTTGGAAGATATAGCAG+TGG | + | chr1.4:87889013-87889032 | MS.gene90822:CDS | 30.0% | |
| TTGAAATCAGTTGGAACTTA+TGG | + | chr1.4:87889578-87889597 | MS.gene90822:CDS | 30.0% | |
| ! | CCCTCTAATTAACTTTTCAA+AGG | - | chr1.4:87889492-87889511 | None:intergenic | 30.0% |
| ! | CCCTTTGAAAAGTTAATTAG+AGG | + | chr1.4:87889488-87889507 | MS.gene90822:CDS | 30.0% |
| !! | AGTCTTATTGATGTAGAGTT+CGG | + | chr1.4:87889356-87889375 | MS.gene90822:intron | 30.0% |
| !! | CTCATATGATTTGGTTGATT+AGG | - | chr1.4:87889338-87889357 | None:intergenic | 30.0% |
| !! | TTTTCTGGTATACTTGTATC+CGG | - | chr1.4:87889855-87889874 | None:intergenic | 30.0% |
| AGATGATTTACCCTTCCATT+TGG | - | chr1.4:87889051-87889070 | None:intergenic | 35.0% | |
| ATCACCTGATGGAATATTAG+GGG | + | chr1.4:87889688-87889707 | MS.gene90822:CDS | 35.0% | |
| CAATCACCTGATGGAATATT+AGG | + | chr1.4:87889686-87889705 | MS.gene90822:CDS | 35.0% | |
| CTTGATGAAGTTTCCTTCAA+TGG | - | chr1.4:87888976-87888995 | None:intergenic | 35.0% | |
| GGATACAAGTATACCAGAAA+AGG | + | chr1.4:87889854-87889873 | MS.gene90822:CDS | 35.0% | |
| TACAAGTATACCAGAAAAGG+AGG | + | chr1.4:87889857-87889876 | MS.gene90822:CDS | 35.0% | |
| TCAAAGATTAGGGAATTGAG+TGG | + | chr1.4:87889512-87889531 | MS.gene90822:CDS | 35.0% | |
| ! | TTTTACAGAGACATCATCTC+AGG | + | chr1.4:87889095-87889114 | MS.gene90822:CDS | 35.0% |
| ACCGGCAAATCATATTTCCT+CGG | + | chr1.4:87888927-87888946 | MS.gene90822:CDS | 40.0% | |
| ATAACCTTCCTTGAGTACTC+AGG | - | chr1.4:87889539-87889558 | None:intergenic | 40.0% | |
| CACTGCCATAGGTGTTTATT+TGG | + | chr1.4:87888998-87889017 | MS.gene90822:CDS | 40.0% | |
| CTAACCCCTAATATTCCATC+AGG | - | chr1.4:87889695-87889714 | None:intergenic | 40.0% | |
| GATGTCTCTGTAAAAGTCGA+GGG | - | chr1.4:87889090-87889109 | None:intergenic | 40.0% | |
| GTTACAGCTTAGTTTCTCTC+CGG | + | chr1.4:87889833-87889852 | MS.gene90822:intron | 40.0% | |
| TGAGTACTCAAGGAAGGTTA+TGG | + | chr1.4:87889538-87889557 | MS.gene90822:CDS | 40.0% | |
| TGATGTCTCTGTAAAAGTCG+AGG | - | chr1.4:87889091-87889110 | None:intergenic | 40.0% | |
| TGATTGCCTGTAGAAAACAG+AGG | - | chr1.4:87889672-87889691 | None:intergenic | 40.0% | |
| TTCATCAAGTTCACTGCCAT+AGG | + | chr1.4:87888987-87889006 | MS.gene90822:CDS | 40.0% | |
| ! | AAATATGATTTGCCGGTGAC+CGG | - | chr1.4:87888924-87888943 | None:intergenic | 40.0% |
| ! | AAGCCTGTTAATTTTCCACC+TGG | + | chr1.4:87889644-87889663 | MS.gene90822:CDS | 40.0% |
| ! | ACCGAGGAAATATGATTTGC+CGG | - | chr1.4:87888931-87888950 | None:intergenic | 40.0% |
| AAGGTTCTCCACAGTGATTG+CGG | - | chr1.4:87888877-87888896 | None:intergenic | 45.0% | |
| ATCAATCACCGCAATCACTG+TGG | + | chr1.4:87888866-87888885 | MS.gene90822:CDS | 45.0% | |
| ATTACCTGCGTTGTTGAACG+AGG | + | chr1.4:87889980-87889999 | MS.gene90822:CDS | 45.0% | |
| CAAACAGCGCTTAAGATCAG+GGG | - | chr1.4:87889952-87889971 | None:intergenic | 45.0% | |
| CCAAACAGCGCTTAAGATCA+GGG | - | chr1.4:87889953-87889972 | None:intergenic | 45.0% | |
| GAAGGTTATGGAGAACTGTG+TGG | + | chr1.4:87889550-87889569 | MS.gene90822:CDS | 45.0% | |
| GAGAGAGGATTGACCATTGA+AGG | + | chr1.4:87888960-87888979 | MS.gene90822:CDS | 45.0% | |
| GCACCAGGTGGAAAATTAAC+AGG | - | chr1.4:87889650-87889669 | None:intergenic | 45.0% | |
| GGCAAATCATATTTCCTCGG+TGG | + | chr1.4:87888930-87888949 | MS.gene90822:CDS | 45.0% | |
| GTGGCACACTTGAAATCAGT+TGG | + | chr1.4:87889569-87889588 | MS.gene90822:CDS | 45.0% | |
| TCACTAGCTGCCAAATGGAA+GGG | + | chr1.4:87889038-87889057 | MS.gene90822:CDS | 45.0% | |
| TTACCTGCGTTGTTGAACGA+GGG | + | chr1.4:87889981-87890000 | MS.gene90822:CDS | 45.0% | |
| TTCACTAGCTGCCAAATGGA+AGG | + | chr1.4:87889037-87889056 | MS.gene90822:CDS | 45.0% | |
| TTCTACAGGCAATCACCTGA+TGG | + | chr1.4:87889677-87889696 | MS.gene90822:CDS | 45.0% | |
| ! | GCAGTGTTGGAGACTATGAT+CGG | + | chr1.4:87889912-87889931 | MS.gene90822:CDS | 45.0% |
| !! | AACGAGGGTGCTTTCAAGAT+TGG | + | chr1.4:87889996-87890015 | MS.gene90822:CDS | 45.0% |
| GACAGACACTCCTCAATCCT+CGG | - | chr1.4:87889256-87889275 | None:intergenic | 50.0% | |
| GCCAAACAGCGCTTAAGATC+AGG | - | chr1.4:87889954-87889973 | None:intergenic | 50.0% | |
| GGAGAACCTTGAATACCCAG+CGG | + | chr1.4:87888887-87888906 | MS.gene90822:CDS | 50.0% | |
| GGCAGTTTCATCAGCAGTGT+TGG | + | chr1.4:87889899-87889918 | MS.gene90822:CDS | 50.0% | |
| GGCTGCACTCATAGAGAACA+AGG | + | chr1.4:87889878-87889897 | MS.gene90822:CDS | 50.0% | |
| TAACCACCGCTGGGTATTCA+AGG | - | chr1.4:87888896-87888915 | None:intergenic | 50.0% | |
| TGAGTGGTCCTGAGTACTCA+AGG | + | chr1.4:87889528-87889547 | MS.gene90822:CDS | 50.0% | |
| TGGCTTCACTAGCTGCCAAA+TGG | + | chr1.4:87889033-87889052 | MS.gene90822:CDS | 50.0% | |
| TGGTCCTGAGTACTCAAGGA+AGG | + | chr1.4:87889532-87889551 | MS.gene90822:CDS | 50.0% | |
| ! | ATGAGTGCAGCCTCCTTTTC+TGG | - | chr1.4:87889870-87889889 | None:intergenic | 50.0% |
| ! | CCCTGATCTTAAGCGCTGTT+TGG | + | chr1.4:87889950-87889969 | MS.gene90822:CDS | 50.0% |
| ! | CTGGTGCCTCTGTTTTCTAC+AGG | + | chr1.4:87889663-87889682 | MS.gene90822:CDS | 50.0% |
| !! | CTGTAGAAAACAGAGGCACC+AGG | - | chr1.4:87889665-87889684 | None:intergenic | 50.0% |
| !! | TAGAAAACAGAGGCACCAGG+TGG | - | chr1.4:87889662-87889681 | None:intergenic | 50.0% |
| ATATTTCCTCGGTGGCGCTG+GGG | + | chr1.4:87888938-87888957 | MS.gene90822:CDS | 55.0% | |
| CATATTTCCTCGGTGGCGCT+GGG | + | chr1.4:87888937-87888956 | MS.gene90822:CDS | 55.0% | |
| CTCCTCAATCCTCGGATCAG+AGG | - | chr1.4:87889248-87889267 | None:intergenic | 55.0% | |
| GAACCTTGAATACCCAGCGG+TGG | + | chr1.4:87888890-87888909 | MS.gene90822:CDS | 55.0% | |
| GACACATGTCCTCTGATCCG+AGG | + | chr1.4:87889236-87889255 | MS.gene90822:intron | 55.0% | |
| GTCCTCTGATCCGAGGATTG+AGG | + | chr1.4:87889243-87889262 | MS.gene90822:intron | 55.0% | |
| TCATATTTCCTCGGTGGCGC+TGG | + | chr1.4:87888936-87888955 | MS.gene90822:CDS | 55.0% | |
| GCACCCTCGTTCAACAACGC+AGG | - | chr1.4:87889987-87890006 | None:intergenic | 60.0% | |
| GTGGTTACCTCTCCGGTCAC+CGG | + | chr1.4:87888909-87888928 | MS.gene90822:CDS | 60.0% | |
| ! | TGATTTGCCGGTGACCGGAG+AGG | - | chr1.4:87888919-87888938 | None:intergenic | 60.0% |
| ACCGGAGAGGTAACCACCGC+TGG | - | chr1.4:87888906-87888925 | None:intergenic | 65.0% | |
| CCCAGCGGTGGTTACCTCTC+CGG | + | chr1.4:87888902-87888921 | MS.gene90822:CDS | 65.0% | |
| CCGGAGAGGTAACCACCGCT+GGG | - | chr1.4:87888905-87888924 | None:intergenic | 65.0% | |
| CTCTCTCCCCAGCGCCACCG+AGG | - | chr1.4:87888947-87888966 | None:intergenic | 75.0% | |
| ! | CTCGGTGGCGCTGGGGAGAG+AGG | + | chr1.4:87888945-87888964 | MS.gene90822:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87888858 | 87890025 | 87888858 | ID=MS.gene90822 |
| chr1.4 | mRNA | 87888858 | 87890025 | 87888858 | ID=MS.gene90822.t1;Parent=MS.gene90822 |
| chr1.4 | exon | 87888858 | 87889116 | 87888858 | ID=MS.gene90822.t1.exon1;Parent=MS.gene90822.t1 |
| chr1.4 | CDS | 87888858 | 87889116 | 87888858 | ID=cds.MS.gene90822.t1;Parent=MS.gene90822.t1 |
| chr1.4 | exon | 87889486 | 87889709 | 87889486 | ID=MS.gene90822.t1.exon2;Parent=MS.gene90822.t1 |
| chr1.4 | CDS | 87889486 | 87889709 | 87889486 | ID=cds.MS.gene90822.t1;Parent=MS.gene90822.t1 |
| chr1.4 | exon | 87889840 | 87890025 | 87889840 | ID=MS.gene90822.t1.exon3;Parent=MS.gene90822.t1 |
| chr1.4 | CDS | 87889840 | 87890025 | 87889840 | ID=cds.MS.gene90822.t1;Parent=MS.gene90822.t1 |
| Gene Sequence |
| Protein sequence |
