Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91000.t1 | XP_024627930.1 | 68.2 | 447 | 116 | 4 | 1 | 440 | 1 | 428 | 3.70E-143 | 518.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91000.t1 | A0A396I0R2 | 63.7 | 540 | 126 | 7 | 1 | 524 | 1 | 486 | 2.2e-137 | 498.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05351 | MS.gene91000 | 0.88501 | 1.17E-71 | -1.69E-46 |
| MS.gene057814 | MS.gene91000 | 0.891188 | 4.99E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91000.t1 | MTR_2g102860 | 83.453 | 139 | 23 | 0 | 378 | 516 | 13 | 151 | 3.83e-68 | 217 |
| MS.gene91000.t1 | MTR_0029s0140 | 83.333 | 144 | 24 | 0 | 370 | 513 | 241 | 384 | 3.96e-68 | 224 |
| MS.gene91000.t1 | MTR_0029s0140 | 83.333 | 78 | 13 | 0 | 162 | 239 | 162 | 239 | 1.73e-41 | 154 |
| MS.gene91000.t1 | MTR_5g080310 | 79.866 | 149 | 26 | 1 | 372 | 520 | 122 | 266 | 1.10e-67 | 219 |
| MS.gene91000.t1 | MTR_2g020090 | 68.790 | 157 | 48 | 1 | 357 | 513 | 49 | 204 | 4.02e-67 | 216 |
| MS.gene91000.t1 | MTR_4g017750 | 83.217 | 143 | 20 | 1 | 371 | 513 | 110 | 248 | 4.55e-67 | 217 |
| MS.gene91000.t1 | MTR_3g058800 | 73.239 | 142 | 37 | 1 | 372 | 513 | 10 | 150 | 2.27e-65 | 209 |
| MS.gene91000.t1 | MTR_6g463490 | 83.761 | 117 | 19 | 0 | 400 | 516 | 3 | 119 | 5.94e-63 | 202 |
| MS.gene91000.t1 | MTR_1g023240 | 74.051 | 158 | 35 | 1 | 353 | 510 | 17 | 168 | 9.84e-62 | 204 |
| MS.gene91000.t1 | MTR_4g023110 | 73.134 | 134 | 35 | 1 | 370 | 503 | 7 | 139 | 1.86e-60 | 196 |
| MS.gene91000.t1 | MTR_8g027455 | 54.487 | 156 | 62 | 4 | 371 | 520 | 24 | 176 | 2.21e-42 | 157 |
| MS.gene91000.t1 | MTR_1g077650 | 66.346 | 104 | 34 | 1 | 371 | 474 | 46 | 148 | 9.62e-40 | 143 |
| MS.gene91000.t1 | MTR_7g035425 | 38.182 | 165 | 87 | 5 | 178 | 330 | 179 | 340 | 9.54e-25 | 105 |
| MS.gene91000.t1 | MTR_7g037680 | 29.858 | 211 | 116 | 5 | 283 | 492 | 17 | 196 | 1.82e-19 | 88.6 |
| MS.gene91000.t1 | MTR_5g053700 | 82.000 | 50 | 5 | 1 | 464 | 513 | 1 | 46 | 1.65e-18 | 79.7 |
| MS.gene91000.t1 | MTR_2g077640 | 29.032 | 217 | 110 | 7 | 240 | 452 | 34 | 210 | 1.16e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 178 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 6.1:-38598118 | MS.gene91000:intron |
| CATGATTGAGGGTTAGTCTT+AGG | 0.184506 | 6.1:+38595948 | None:intergenic |
| TGTGGGAGGGACCTTGAGCC+TGG | 0.232485 | 6.1:+38595756 | None:intergenic |
| TGGAGGGATTTGTTGTTGTT+GGG | 0.261186 | 6.1:+38598551 | None:intergenic |
| GTGGAGGGATTTGTTGTTGT+TGG | 0.265730 | 6.1:+38598550 | None:intergenic |
| CTGGCGTCAGCTCAGGCTGC+TGG | 0.280344 | 6.1:+38595912 | None:intergenic |
| TATGGCACCCTACCTCCTTA+TGG | 0.289334 | 6.1:-38598639 | MS.gene91000:CDS |
| CCCGCCTATCTTTGGTGAAT+TGG | 0.291684 | 6.1:-38597866 | MS.gene91000:CDS |
| TTGCCCTTGCTCTTTCCATT+AGG | 0.302043 | 6.1:+38598879 | None:intergenic |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 6.1:-38598176 | MS.gene91000:CDS |
| TGGTGAATTGGTTAAGTATT+GGG | 0.326447 | 6.1:-38597854 | MS.gene91000:CDS |
| TTGCTCTTTCCATTAGGTTT+CGG | 0.328125 | 6.1:+38598885 | None:intergenic |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 6.1:-38598014 | MS.gene91000:intron |
| CCGGTTCTTCTTTGCTTTGT+CGG | 0.346522 | 6.1:+38597807 | None:intergenic |
| CTTGCCGAGGCTATTTCTAA+TGG | 0.350981 | 6.1:-38596097 | MS.gene91000:CDS |
| TGGATTGGCCCGCCTATCTT+TGG | 0.360603 | 6.1:-38597874 | MS.gene91000:CDS |
| CCAGTACATCCTGGATATTA+TGG | 0.365206 | 6.1:-38598657 | MS.gene91000:CDS |
| GGATTTGTTGTTGTTGGGGA+AGG | 0.379887 | 6.1:+38598556 | None:intergenic |
| TCTTCTAGCCAGGGTTCACC+TGG | 0.380100 | 6.1:-38598747 | MS.gene91000:CDS |
| CGCATCTCTGGCGTCAGCTC+AGG | 0.380128 | 6.1:+38595905 | None:intergenic |
| CGAGAATCTCTCGGATAATC+CGG | 0.382857 | 6.1:+38598354 | None:intergenic |
| ATGATTGAGGGTTAGTCTTA+GGG | 0.390145 | 6.1:+38595949 | None:intergenic |
| ATTTGTTGTTGTTGGGGAAG+GGG | 0.399109 | 6.1:+38598558 | None:intergenic |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 6.1:+38597911 | None:intergenic |
| ATGGCACCCTACCTCCTTAT+GGG | 0.404620 | 6.1:-38598638 | MS.gene91000:CDS |
| AGGAGCAGCTGGCACAGTTT+AGG | 0.406187 | 6.1:-38595784 | MS.gene91000:CDS |
| GTTGTTGTTGGGGAAGGGGA+AGG | 0.412477 | 6.1:+38598562 | None:intergenic |
| GAAGAACCGGGCGTCGGAAA+AGG | 0.413034 | 6.1:-38597794 | MS.gene91000:CDS |
| ATCTGCTACATCTTCTAGCC+AGG | 0.413120 | 6.1:-38598757 | MS.gene91000:CDS |
| GCTATACGGTCTTGGTAACT+TGG | 0.413255 | 6.1:-38596005 | MS.gene91000:CDS |
| GATTGCTTCAGCAGCCGGTT+TGG | 0.416531 | 6.1:+38598212 | None:intergenic |
| TGTTGTTGTTGGGGTTGTGG+TGG | 0.418549 | 6.1:+38598453 | None:intergenic |
| TGAATATGGTGGTAAATGAT+AGG | 0.419203 | 6.1:+38598599 | None:intergenic |
| GTTGTTGTTGGGGTTGTGGT+GGG | 0.422252 | 6.1:+38598454 | None:intergenic |
| TGAATAAGCTCCCGCATCTC+TGG | 0.423368 | 6.1:+38595893 | None:intergenic |
| CCGACAAAGCAAAGAAGAAC+CGG | 0.424122 | 6.1:-38597807 | MS.gene91000:CDS |
| TTGGTGAATTGGTTAAGTAT+TGG | 0.427319 | 6.1:-38597855 | MS.gene91000:CDS |
| GTTGTGGAGGGATTTGTTGT+AGG | 0.427635 | 6.1:+38598508 | None:intergenic |
| TGTTGTTGTTGGGGAACAGG+TGG | 0.434610 | 6.1:+38598480 | None:intergenic |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 6.1:-38598013 | MS.gene91000:intron |
| GTTGTTGTTGGGGAACAGGT+GGG | 0.436449 | 6.1:+38598481 | None:intergenic |
| TTGCCGAGGCTATTTCTAAT+GGG | 0.436783 | 6.1:-38596096 | MS.gene91000:CDS |
| TGAGCTGACGCCAGAGATGC+GGG | 0.441007 | 6.1:-38595903 | MS.gene91000:CDS |
| TCCTCCTCATCTACCGGATA+AGG | 0.441120 | 6.1:+38595701 | None:intergenic |
| GGAATGCCTCCGAAACCTAA+TGG | 0.442258 | 6.1:-38598894 | MS.gene91000:CDS |
| GCAGAAGCCGTCGCAGGAGC+AGG | 0.442516 | 6.1:+38598705 | None:intergenic |
| CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 6.1:-38598335 | MS.gene91000:CDS |
| TGGCGTCAGCTCAGGCTGCT+GGG | 0.447507 | 6.1:+38595913 | None:intergenic |
| AAGAAGAAGGGAAAGCTATA+CGG | 0.450481 | 6.1:-38596019 | MS.gene91000:CDS |
| ACCGGATAAGGCTCAACATT+GGG | 0.453953 | 6.1:+38595713 | None:intergenic |
| CCATAATATCCAGGATGTAC+TGG | 0.458343 | 6.1:+38598657 | None:intergenic |
| TTGTGGAGGGATTTGTTGTA+GGG | 0.460385 | 6.1:+38598509 | None:intergenic |
| GGGATTTGTTGTAGGGAAGA+AGG | 0.460436 | 6.1:+38598516 | None:intergenic |
| TTTCTTGTTGGGGTTGTGGT+GGG | 0.460769 | 6.1:+38598427 | None:intergenic |
| GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 6.1:+38598207 | None:intergenic |
| TTAATTGCTCTTGCGTCAAA+CGG | 0.464925 | 6.1:+38595870 | None:intergenic |
| AGGACCCTTCACCATGATTG+AGG | 0.467659 | 6.1:+38595936 | None:intergenic |
| TTAACCAATTCACCAAAGAT+AGG | 0.468585 | 6.1:+38597862 | None:intergenic |
| GATTTGTTGTTGTTGGGGAA+GGG | 0.469554 | 6.1:+38598557 | None:intergenic |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 6.1:-38597917 | MS.gene91000:CDS |
| CAGGAGCAGGTACACTAGCC+TGG | 0.474014 | 6.1:+38598718 | None:intergenic |
| GGGTTCACCTGGGTCCTCCC+AGG | 0.480027 | 6.1:-38598736 | MS.gene91000:CDS |
| AAGGGAAAGCTATACGGTCT+TGG | 0.480141 | 6.1:-38596013 | MS.gene91000:CDS |
| GCTCCTCATATGACCTTTGA+CGG | 0.484551 | 6.1:+38595801 | None:intergenic |
| GGAGGGATTTGTTGTTGTTG+GGG | 0.486144 | 6.1:+38598552 | None:intergenic |
| TAGCACGCTCGTCGCAGTAT+TGG | 0.486252 | 6.1:+38597556 | None:intergenic |
| TTGATGCAACACTACCCTTC+CGG | 0.489648 | 6.1:+38595972 | None:intergenic |
| CGGAGAGCACGCTGAGCGTA+TGG | 0.490492 | 6.1:-38597737 | MS.gene91000:intron |
| CATAGCTTCCCAAGAACACT+TGG | 0.490648 | 6.1:+38598005 | None:intergenic |
| TCCCAATGTTGAGCCTTATC+CGG | 0.490951 | 6.1:-38595714 | MS.gene91000:CDS |
| TCGTGAAGCTCGTTAATAAA+CGG | 0.493110 | 6.1:+38597603 | None:intergenic |
| GCGGTATAATACTCACTTAG+TGG | 0.494631 | 6.1:-38598847 | MS.gene91000:CDS |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 6.1:-38597836 | MS.gene91000:CDS |
| AAGAACCGGGCGTCGGAAAA+GGG | 0.501037 | 6.1:-38597793 | MS.gene91000:CDS |
| CTCTTTCCATTAGGTTTCGG+AGG | 0.502358 | 6.1:+38598888 | None:intergenic |
| GAAAGAGCAAGGGCAACAGC+AGG | 0.505028 | 6.1:-38598872 | MS.gene91000:CDS |
| CGAAGAGGGTGGTGGAGAGC+TGG | 0.506575 | 6.1:-38598397 | MS.gene91000:CDS |
| ATTCTTTGACCTTCAACACT+TGG | 0.510375 | 6.1:-38596060 | MS.gene91000:CDS |
| AAGATTTGCTTAACCGTCAA+AGG | 0.511841 | 6.1:-38595814 | MS.gene91000:CDS |
| TGAGGAGCAGAAGCCGTCGC+AGG | 0.513097 | 6.1:+38598699 | None:intergenic |
| AATACTGCGACGAGCGTGCT+AGG | 0.515851 | 6.1:-38597554 | MS.gene91000:CDS |
| TTTGTTGTAGGGAAGAAGGT+GGG | 0.521691 | 6.1:+38598520 | None:intergenic |
| GGCACAGTTTAGGCAAGCCC+AGG | 0.523133 | 6.1:-38595774 | MS.gene91000:CDS |
| ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 6.1:+38598185 | None:intergenic |
| GCTTCAGCAGCCGGTTTGGA+AGG | 0.524446 | 6.1:+38598216 | None:intergenic |
| AGACAAGAAAGCGGCCACAT+TGG | 0.524562 | 6.1:-38597894 | MS.gene91000:CDS |
| GTGGGAGGGACCTTGAGCCT+GGG | 0.524940 | 6.1:+38595757 | None:intergenic |
| TATGGTGGTAAATGATAGGT+CGG | 0.525246 | 6.1:+38598603 | None:intergenic |
| GGAGGAAGGAAGGTCCCATA+AGG | 0.527593 | 6.1:+38598624 | None:intergenic |
| AGAAAGCGGCCACATTGGAT+TGG | 0.531391 | 6.1:-38597889 | MS.gene91000:CDS |
| GGACCCTTCACCATGATTGA+GGG | 0.531656 | 6.1:+38595937 | None:intergenic |
| TACTGGAGGGCACATGTAAG+TGG | 0.532234 | 6.1:+38598674 | None:intergenic |
| TCATCATCCTCCTCATCTAC+CGG | 0.536805 | 6.1:+38595695 | None:intergenic |
| TAACCGTCAAAGGTCATATG+AGG | 0.541572 | 6.1:-38595804 | MS.gene91000:CDS |
| CCAATTCACCAAAGATAGGC+GGG | 0.544604 | 6.1:+38597866 | None:intergenic |
| GGTAGGGTGCCATAATATCC+AGG | 0.544917 | 6.1:+38598648 | None:intergenic |
| TTAAAAGCGGCGCACTAGTG+TGG | 0.545514 | 6.1:+38595738 | None:intergenic |
| AAGGTCATATGAGGAGCAGC+TGG | 0.546890 | 6.1:-38595795 | MS.gene91000:CDS |
| AGGAGCAGGTACACTAGCCT+GGG | 0.550263 | 6.1:+38598719 | None:intergenic |
| TAAAAGCGGCGCACTAGTGT+GGG | 0.551339 | 6.1:+38595739 | None:intergenic |
| CTGAGCTGACGCCAGAGATG+CGG | 0.553348 | 6.1:-38595904 | MS.gene91000:CDS |
| CAAGAAAATGTGGTCGAAGA+GGG | 0.555530 | 6.1:-38598411 | MS.gene91000:CDS |
| AAATAGCCTCGGCAAGCTGC+CGG | 0.555959 | 6.1:+38596104 | None:intergenic |
| ATGTGCCCTCCAGTACATCC+TGG | 0.557262 | 6.1:-38598666 | MS.gene91000:CDS |
| CGAGCGTGCTAGGAGTGTGC+AGG | 0.557294 | 6.1:-38597544 | MS.gene91000:intron |
| AGTTGCTGGAGACAAGAAGA+AGG | 0.557374 | 6.1:-38596032 | MS.gene91000:CDS |
| GCAGTAGAAATGACAGGCAT+CGG | 0.558650 | 6.1:+38598798 | None:intergenic |
| TACCGGATAAGGCTCAACAT+TGG | 0.558734 | 6.1:+38595712 | None:intergenic |
| GGGAGGACCCAGGTGAACCC+TGG | 0.559461 | 6.1:+38598739 | None:intergenic |
| ATAGGCTAGGAGGTTACGTC+GGG | 0.559517 | 6.1:-38597628 | MS.gene91000:intron |
| TTTAGGCAAGCCCAGGCTCA+AGG | 0.561956 | 6.1:-38595767 | MS.gene91000:CDS |
| CTAAGACTAACCCTCAATCA+TGG | 0.562434 | 6.1:-38595947 | MS.gene91000:CDS |
| GGAAGGTCCCATAAGGAGGT+AGG | 0.563395 | 6.1:+38598631 | None:intergenic |
| GCAAGGGCAACAGCAGGAAG+CGG | 0.568162 | 6.1:-38598866 | MS.gene91000:CDS |
| GTAACTTGGCTGCTAACTAC+CGG | 0.570124 | 6.1:-38595991 | MS.gene91000:CDS |
| ACGCTCGTCGCAGTATTGGC+CGG | 0.570260 | 6.1:+38597560 | None:intergenic |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 6.1:+38597912 | None:intergenic |
| AATGTGGTCGAAGAGGGTGG+TGG | 0.572688 | 6.1:-38598405 | MS.gene91000:CDS |
| TCTGCTACATCTTCTAGCCA+GGG | 0.575189 | 6.1:-38598756 | MS.gene91000:CDS |
| ATGATAGGTCGGAGGAAGGA+AGG | 0.575427 | 6.1:+38598614 | None:intergenic |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 6.1:-38597845 | MS.gene91000:CDS |
| CTTAGTGGACGCAGCGACAG+AGG | 0.579770 | 6.1:-38598832 | MS.gene91000:CDS |
| AGCAAAGAAGAACCGGGCGT+CGG | 0.582886 | 6.1:-38597800 | MS.gene91000:CDS |
| TTGAACAGGAGGAGTATGAC+CGG | 0.586858 | 6.1:-38596123 | MS.gene91000:intron |
| GTAAATGATAGGTCGGAGGA+AGG | 0.587191 | 6.1:+38598610 | None:intergenic |
| CTAACCCTCAATCATGGTGA+AGG | 0.587704 | 6.1:-38595941 | MS.gene91000:CDS |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 6.1:+38598312 | None:intergenic |
| GGGCACATGTAAGTGGGATG+AGG | 0.589794 | 6.1:+38598681 | None:intergenic |
| GGATGATGAGGATCATGATG+AGG | 0.590861 | 6.1:-38595681 | MS.gene91000:CDS |
| GTAGATGCAGTAGAAATGAC+AGG | 0.591240 | 6.1:+38598792 | None:intergenic |
| GAAGGTCCCATAAGGAGGTA+GGG | 0.591901 | 6.1:+38598632 | None:intergenic |
| AGAGCAATTAACGCAACAGA+TGG | 0.592019 | 6.1:-38595858 | MS.gene91000:CDS |
| GAAACCTAATGGAAAGAGCA+AGG | 0.595131 | 6.1:-38598883 | MS.gene91000:CDS |
| GAGAATCTCTCGGATAATCC+GGG | 0.595824 | 6.1:+38598355 | None:intergenic |
| TAGTGTACCTGCTCCTGCGA+CGG | 0.598519 | 6.1:-38598712 | MS.gene91000:CDS |
| AAGCGGCGCACTAGTGTGGG+AGG | 0.600468 | 6.1:+38595742 | None:intergenic |
| GTATGACCGGCAGCTTGCCG+AGG | 0.601524 | 6.1:-38596110 | MS.gene91000:CDS |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 6.1:-38598327 | MS.gene91000:CDS |
| CGACAAAGCAAAGAAGAACC+GGG | 0.601764 | 6.1:-38597806 | MS.gene91000:CDS |
| CTTCTAGCCAGGGTTCACCT+GGG | 0.603050 | 6.1:-38598746 | MS.gene91000:CDS |
| ACAAGAAAATGTGGTCGAAG+AGG | 0.610168 | 6.1:-38598412 | MS.gene91000:CDS |
| ATTTGTTGTAGGGAAGAAGG+TGG | 0.610524 | 6.1:+38598519 | None:intergenic |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 6.1:-38597924 | MS.gene91000:CDS |
| GGAAGGAAGGTCCCATAAGG+AGG | 0.617014 | 6.1:+38598627 | None:intergenic |
| GATGTTTAATGATGTTTACC+CGG | 0.618633 | 6.1:-38598373 | MS.gene91000:CDS |
| GCCTTATCCGGTAGATGAGG+AGG | 0.618778 | 6.1:-38595702 | MS.gene91000:CDS |
| TAATATCCAGGATGTACTGG+AGG | 0.622903 | 6.1:+38598660 | None:intergenic |
| ACCAATTCACCAAAGATAGG+CGG | 0.624368 | 6.1:+38597865 | None:intergenic |
| CTTGGCTGCTAACTACCGGA+AGG | 0.625442 | 6.1:-38595987 | MS.gene91000:CDS |
| GTTGCTGGAGACAAGAAGAA+GGG | 0.632114 | 6.1:-38596031 | MS.gene91000:CDS |
| AATAGGCTAGGAGGTTACGT+CGG | 0.632889 | 6.1:-38597629 | MS.gene91000:intron |
| AATCGACGACGAGAATCTCT+CGG | 0.634346 | 6.1:+38598345 | None:intergenic |
| TAACCCTCAATCATGGTGAA+GGG | 0.637969 | 6.1:-38595940 | MS.gene91000:CDS |
| TGTGGTGGGACTGAATATGG+TGG | 0.638237 | 6.1:+38598588 | None:intergenic |
| GGTAGATGAGGAGGATGATG+AGG | 0.638477 | 6.1:-38595693 | MS.gene91000:CDS |
| CATGTGACAAATAGGCTAGG+AGG | 0.639349 | 6.1:-38597638 | MS.gene91000:intron |
| TGAGCCTTATCCGGTAGATG+AGG | 0.639385 | 6.1:-38595705 | MS.gene91000:CDS |
| AAACCTAATGGAAAGAGCAA+GGG | 0.642664 | 6.1:-38598882 | MS.gene91000:CDS |
| AGACCCATTAGAAATAGCCT+CGG | 0.644902 | 6.1:+38596093 | None:intergenic |
| ACACTAGCCTGGGAGGACCC+AGG | 0.645467 | 6.1:+38598729 | None:intergenic |
| GGTGGTAAATGATAGGTCGG+AGG | 0.646104 | 6.1:+38598606 | None:intergenic |
| ACTGGTGGTTGCTTAAGCAA+CGG | 0.650281 | 6.1:-38597757 | MS.gene91000:CDS |
| CGTCAGCTCAGGCTGCTGGG+AGG | 0.651312 | 6.1:+38595916 | None:intergenic |
| TTGGAAGACATATGGTGATG+TGG | 0.652180 | 6.1:-38598157 | MS.gene91000:CDS |
| TCAACATTGGGACTTAAAAG+CGG | 0.654070 | 6.1:+38595725 | None:intergenic |
| AGCGGCGCACTAGTGTGGGA+GGG | 0.654626 | 6.1:+38595743 | None:intergenic |
| ACAACCCCAACAAGAAAATG+TGG | 0.656244 | 6.1:-38598421 | MS.gene91000:CDS |
| AGCAGGTACACTAGCCTGGG+AGG | 0.658527 | 6.1:+38598722 | None:intergenic |
| TTGGCTGCTAACTACCGGAA+GGG | 0.659168 | 6.1:-38595986 | MS.gene91000:CDS |
| GGAGGATGCATTCACACTGG+TGG | 0.660778 | 6.1:-38597772 | MS.gene91000:CDS |
| GAAAATGTGGTCGAAGAGGG+TGG | 0.661104 | 6.1:-38598408 | MS.gene91000:CDS |
| GCAACAGATGGCAAGTCAAG+CGG | 0.662263 | 6.1:-38595846 | MS.gene91000:CDS |
| AACCGGGCGTCGGAAAAGGG+AGG | 0.663571 | 6.1:-38597790 | MS.gene91000:CDS |
| AAGGGAGGATGCATTCACAC+TGG | 0.674246 | 6.1:-38597775 | MS.gene91000:CDS |
| AATATCCAGGATGTACTGGA+GGG | 0.686056 | 6.1:+38598661 | None:intergenic |
| ACTGGAGGGCACATGTAAGT+GGG | 0.711086 | 6.1:+38598675 | None:intergenic |
| ATAGGCGGGCCAATCCAATG+TGG | 0.757504 | 6.1:+38597880 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.763875 | 6.1:-38597903 | MS.gene91000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATAATAAACAAAATA+AGG | + | chr6.1:38598337-38598356 | None:intergenic | 10.0% |
| !! | ACAATCAAAATTAAATGATA+TGG | + | chr6.1:38596884-38596903 | None:intergenic | 15.0% |
| !!! | AAAATTGAGGATTTTATAAA+AGG | - | chr6.1:38597248-38597267 | MS.gene91000:intron | 15.0% |
| !!! | TATTTTGTTATTATTTGAAC+AGG | - | chr6.1:38598430-38598449 | MS.gene91000:CDS | 15.0% |
| !! | CAGTAAAAATGAAATTGATA+TGG | + | chr6.1:38597499-38597518 | None:intergenic | 20.0% |
| !! | TATAAAGATTAAGAACACAT+TGG | + | chr6.1:38598164-38598183 | None:intergenic | 20.0% |
| !! | TGAAAAATTTGAGAAAAATC+AGG | - | chr6.1:38597408-38597427 | MS.gene91000:intron | 20.0% |
| !!! | AAGCCTTATAATATCTATTT+AGG | + | chr6.1:38597862-38597881 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTAATCCGAATTG+TGG | - | chr6.1:38597139-38597158 | MS.gene91000:intron | 20.0% |
| !!! | TTTTATTTCATGTGACAAAT+AGG | - | chr6.1:38596921-38596940 | MS.gene91000:intron | 20.0% |
| ! | AAAATATTTAAGGACAGAAC+TGG | + | chr6.1:38598416-38598435 | None:intergenic | 25.0% |
| ! | AAGGAAACTAATCATAAGAA+TGG | + | chr6.1:38598318-38598337 | None:intergenic | 25.0% |
| ! | AATTTCAGTTAAGCAAAAGT+TGG | + | chr6.1:38597172-38597191 | None:intergenic | 25.0% |
| ! | ACAAATTCATAAGCAATAAC+AGG | + | chr6.1:38597734-38597753 | None:intergenic | 25.0% |
| ! | ATTTCAGTTAAGCAAAAGTT+GGG | + | chr6.1:38597171-38597190 | None:intergenic | 25.0% |
| ! | CAAATTCATAAGCAATAACA+GGG | + | chr6.1:38597733-38597752 | None:intergenic | 25.0% |
| ! | GAAAACTATATAGAATCAAG+TGG | + | chr6.1:38598075-38598094 | None:intergenic | 25.0% |
| ! | TGGCCTAAATAGATATTATA+AGG | - | chr6.1:38597856-38597875 | MS.gene91000:CDS | 25.0% |
| !! | ACTTTTGCTTAACTGAAATT+TGG | - | chr6.1:38597172-38597191 | MS.gene91000:intron | 25.0% |
| !! | TAGAATTTAGAACTTATCAC+AGG | - | chr6.1:38598129-38598148 | MS.gene91000:CDS | 25.0% |
| !! | TGTTTCTGTCAAAAAAATTG+AGG | - | chr6.1:38597235-38597254 | MS.gene91000:intron | 25.0% |
| !!! | GCTTTTTGAAAGAATAGAAA+AGG | - | chr6.1:38597457-38597476 | MS.gene91000:intron | 25.0% |
| !!! | TTTGTTATTATTTGAACAGG+AGG | - | chr6.1:38598433-38598452 | MS.gene91000:CDS | 25.0% |
| AAAACTGAGTACTAAGGTAA+GGG | + | chr6.1:38597891-38597910 | None:intergenic | 30.0% | |
| AAAGTCGATTAAAATTACCG+CGG | + | chr6.1:38597689-38597708 | None:intergenic | 30.0% | |
| AAGACTCATAAGTCAACATT+AGG | + | chr6.1:38597644-38597663 | None:intergenic | 30.0% | |
| AATAACAGAGAAACAGTGTA+AGG | + | chr6.1:38598386-38598405 | None:intergenic | 30.0% | |
| ATGATAGCAGTTATGAATGA+TGG | + | chr6.1:38596385-38596404 | None:intergenic | 30.0% | |
| CATTACATAGCTCAATTCTT+CGG | + | chr6.1:38597565-38597584 | None:intergenic | 30.0% | |
| GATGTTTAATGATGTTTACC+CGG | - | chr6.1:38596194-38596213 | MS.gene91000:intron | 30.0% | |
| TGAATATGGTGGTAAATGAT+AGG | + | chr6.1:38595971-38595990 | None:intergenic | 30.0% | |
| TGAGACTTATGATAAAACTC+TGG | + | chr6.1:38597345-38597364 | None:intergenic | 30.0% | |
| TGGTGAATTGGTTAAGTATT+GGG | - | chr6.1:38596713-38596732 | MS.gene91000:intron | 30.0% | |
| TGTGAATTATGATCGATTGT+TGG | - | chr6.1:38597295-38597314 | MS.gene91000:intron | 30.0% | |
| TGTTGTTGAATTTCTCTGAT+TGG | - | chr6.1:38597517-38597536 | MS.gene91000:intron | 30.0% | |
| TTAACCAATTCACCAAAGAT+AGG | + | chr6.1:38596708-38596727 | None:intergenic | 30.0% | |
| TTATGATAAAACTCTGGTGA+GGG | + | chr6.1:38597339-38597358 | None:intergenic | 30.0% | |
| TTGGTGAATTGGTTAAGTAT+TGG | - | chr6.1:38596712-38596731 | MS.gene91000:intron | 30.0% | |
| TTTCAGTTAAGCAAAAGTTG+GGG | + | chr6.1:38597170-38597189 | None:intergenic | 30.0% | |
| TTTGTGTTATAGATGTCTTG+CGG | - | chr6.1:38597749-38597768 | MS.gene91000:CDS | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | - | chr6.1:38596391-38596410 | MS.gene91000:intron | 30.0% |
| ! | CTCTTGTTCTAGATATGATT+TGG | - | chr6.1:38597201-38597220 | MS.gene91000:intron | 30.0% |
| ! | TTTTCTTGCAATCACATAAC+AGG | + | chr6.1:38598252-38598271 | None:intergenic | 30.0% |
| !!! | AACTTTTTTCCAAGTGTTGA+AGG | + | chr6.1:38598519-38598538 | None:intergenic | 30.0% |
| AAACCTAATGGAAAGAGCAA+GGG | - | chr6.1:38595685-38595704 | MS.gene91000:CDS | 35.0% | |
| AACACTTGGAAAAAAGTTGC+TGG | - | chr6.1:38598521-38598540 | MS.gene91000:CDS | 35.0% | |
| AAGAAGAAGGGAAAGCTATA+CGG | - | chr6.1:38598548-38598567 | MS.gene91000:CDS | 35.0% | |
| AAGATTAAGAACACATTGGC+TGG | + | chr6.1:38598160-38598179 | None:intergenic | 35.0% | |
| AATGACAAACAAGACAGAAC+TGG | + | chr6.1:38597113-38597132 | None:intergenic | 35.0% | |
| ATTCTTTGACCTTCAACACT+TGG | - | chr6.1:38598507-38598526 | MS.gene91000:CDS | 35.0% | |
| CAAAACTGAGTACTAAGGTA+AGG | + | chr6.1:38597892-38597911 | None:intergenic | 35.0% | |
| CGAAGAATTGAGCTATGTAA+TGG | - | chr6.1:38597563-38597582 | MS.gene91000:CDS | 35.0% | |
| CTAGCACACATAATTATCTC+AGG | + | chr6.1:38597385-38597404 | None:intergenic | 35.0% | |
| CTTATGATAAAACTCTGGTG+AGG | + | chr6.1:38597340-38597359 | None:intergenic | 35.0% | |
| GAAACGCACAAAAATAAGTC+CGG | - | chr6.1:38596988-38597007 | MS.gene91000:intron | 35.0% | |
| GGCAAGTTGTAATTGCTTAT+AGG | + | chr6.1:38598226-38598245 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGATAGGT+CGG | + | chr6.1:38595967-38595986 | None:intergenic | 35.0% | |
| TCAACATTGGGACTTAAAAG+CGG | + | chr6.1:38598845-38598864 | None:intergenic | 35.0% | |
| TCGTGAAGCTCGTTAATAAA+CGG | + | chr6.1:38596967-38596986 | None:intergenic | 35.0% | |
| TTAATTGCTCTTGCGTCAAA+CGG | + | chr6.1:38598700-38598719 | None:intergenic | 35.0% | |
| TTGCAATCACATAACAGGTT+TGG | + | chr6.1:38598247-38598266 | None:intergenic | 35.0% | |
| TTGCTCTTTCCATTAGGTTT+CGG | + | chr6.1:38595685-38595704 | None:intergenic | 35.0% | |
| TTTCATGTGACAAATAGGCT+AGG | - | chr6.1:38596926-38596945 | MS.gene91000:intron | 35.0% | |
| ! | AAGATTTGCTTAACCGTCAA+AGG | - | chr6.1:38598753-38598772 | MS.gene91000:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | - | chr6.1:38596433-38596452 | MS.gene91000:intron | 35.0% |
| ! | TACCTTAGTACTCAGTTTTG+TGG | - | chr6.1:38597892-38597911 | MS.gene91000:CDS | 35.0% |
| ! | TTCGACCACATTTTCTTGTT+GGG | + | chr6.1:38596154-38596173 | None:intergenic | 35.0% |
| ! | TTTTAATCCGAATTGTGGTC+TGG | - | chr6.1:38597144-38597163 | MS.gene91000:intron | 35.0% |
| !! | ACCTTAGTACTCAGTTTTGT+GGG | - | chr6.1:38597893-38597912 | MS.gene91000:CDS | 35.0% |
| !! | ATGATTGAGGGTTAGTCTTA+GGG | + | chr6.1:38598621-38598640 | None:intergenic | 35.0% |
| !! | CATCACTTTTGGAAGACATA+TGG | - | chr6.1:38596402-38596421 | MS.gene91000:intron | 35.0% |
| !! | CGACTTTGTTGATTCTTACA+AGG | - | chr6.1:38597702-38597721 | MS.gene91000:intron | 35.0% |
| !! | GTTCTGTCTTGTTTGTCATT+TGG | - | chr6.1:38597113-38597132 | MS.gene91000:intron | 35.0% |
| !!! | GCACTATTTTTGTTGCAGTT+TGG | - | chr6.1:38597085-38597104 | MS.gene91000:intron | 35.0% |
| AATATCCAGGATGTACTGGA+GGG | + | chr6.1:38595909-38595928 | None:intergenic | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | - | chr6.1:38596554-38596573 | MS.gene91000:intron | 40.0% | |
| ACAACCCCAACAAGAAAATG+TGG | - | chr6.1:38596146-38596165 | MS.gene91000:intron | 40.0% | |
| ACAAGAAAATGTGGTCGAAG+AGG | - | chr6.1:38596155-38596174 | MS.gene91000:intron | 40.0% | |
| ACCAATTCACCAAAGATAGG+CGG | + | chr6.1:38596705-38596724 | None:intergenic | 40.0% | |
| AGACCCATTAGAAATAGCCT+CGG | + | chr6.1:38598477-38598496 | None:intergenic | 40.0% | |
| AGAGCAATTAACGCAACAGA+TGG | - | chr6.1:38598709-38598728 | MS.gene91000:CDS | 40.0% | |
| ATCTCAGGAGTTGCATCTTT+AGG | + | chr6.1:38597370-38597389 | None:intergenic | 40.0% | |
| ATTTAAGGACAGAACTGGCA+AGG | + | chr6.1:38598411-38598430 | None:intergenic | 40.0% | |
| CAAGAAAATGTGGTCGAAGA+GGG | - | chr6.1:38596156-38596175 | MS.gene91000:intron | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | - | chr6.1:38595910-38595929 | MS.gene91000:CDS | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | + | chr6.1:38595913-38595932 | None:intergenic | 40.0% | |
| CTAAGACTAACCCTCAATCA+TGG | - | chr6.1:38598620-38598639 | MS.gene91000:CDS | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | - | chr6.1:38595684-38595703 | MS.gene91000:CDS | 40.0% | |
| GAAGGTGATGAATGATACAG+AGG | + | chr6.1:38597788-38597807 | None:intergenic | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | - | chr6.1:38595720-38595739 | MS.gene91000:CDS | 40.0% | |
| GTAGATGCAGTAGAAATGAC+AGG | + | chr6.1:38595778-38595797 | None:intergenic | 40.0% | |
| TAACCCTCAATCATGGTGAA+GGG | - | chr6.1:38598627-38598646 | MS.gene91000:CDS | 40.0% | |
| TAACCGTCAAAGGTCATATG+AGG | - | chr6.1:38598763-38598782 | MS.gene91000:CDS | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | + | chr6.1:38595910-38595929 | None:intergenic | 40.0% | |
| TAATGCAGACCAAGTGTTCT+TGG | - | chr6.1:38596553-38596572 | MS.gene91000:intron | 40.0% | |
| TCCCACAAAACTGAGTACTA+AGG | + | chr6.1:38597897-38597916 | None:intergenic | 40.0% | |
| TCTATTTAGGCCATGTCTCT+AGG | + | chr6.1:38597849-38597868 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | + | chr6.1:38596258-38596277 | None:intergenic | 40.0% | |
| TGTCTCTAGGCAATGAAGAA+CGG | + | chr6.1:38597836-38597855 | None:intergenic | 40.0% | |
| TTAAAATTACCGCGGACAGA+TGG | + | chr6.1:38597681-38597700 | None:intergenic | 40.0% | |
| TTCTTCATTGCCTAGAGACA+TGG | - | chr6.1:38597836-38597855 | MS.gene91000:CDS | 40.0% | |
| ! | ACATTTTCTTGTTGGGGTTG+TGG | + | chr6.1:38596147-38596166 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | + | chr6.1:38596155-38596174 | None:intergenic | 40.0% |
| ! | CTTGTCGTATCTCTCAGTTT+TGG | - | chr6.1:38597050-38597069 | MS.gene91000:intron | 40.0% |
| ! | TCGACCACATTTTCTTGTTG+GGG | + | chr6.1:38596153-38596172 | None:intergenic | 40.0% |
| ! | TTGGAAGACATATGGTGATG+TGG | - | chr6.1:38596410-38596429 | MS.gene91000:intron | 40.0% |
| ! | TTTGTTGTAGGGAAGAAGGT+GGG | + | chr6.1:38596050-38596069 | None:intergenic | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | - | chr6.1:38596439-38596458 | MS.gene91000:intron | 40.0% |
| !! | ATTTGTTGTAGGGAAGAAGG+TGG | + | chr6.1:38596051-38596070 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGTTGGGGAAG+GGG | + | chr6.1:38596012-38596031 | None:intergenic | 40.0% |
| !! | CATGATTGAGGGTTAGTCTT+AGG | + | chr6.1:38598622-38598641 | None:intergenic | 40.0% |
| !! | GATTTGTTGTTGTTGGGGAA+GGG | + | chr6.1:38596013-38596032 | None:intergenic | 40.0% |
| !! | TGGAGGGATTTGTTGTTGTT+GGG | + | chr6.1:38596019-38596038 | None:intergenic | 40.0% |
| !! | TTGCCGAGGCTATTTCTAAT+GGG | - | chr6.1:38598471-38598490 | MS.gene91000:CDS | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTA+GGG | + | chr6.1:38596061-38596080 | None:intergenic | 40.0% |
| !! | TTTTGTGGTGGGACTGAATA+TGG | + | chr6.1:38595985-38596004 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | + | chr6.1:38596100-38596119 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGAAC+AGG | + | chr6.1:38596093-38596112 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | + | chr6.1:38596120-38596139 | None:intergenic | 40.0% |
| AAGGGAAAGCTATACGGTCT+TGG | - | chr6.1:38598554-38598573 | MS.gene91000:CDS | 45.0% | |
| AATAGGCTAGGAGGTTACGT+CGG | - | chr6.1:38596938-38596957 | MS.gene91000:intron | 45.0% | |
| AATCGACGACGAGAATCTCT+CGG | + | chr6.1:38596225-38596244 | None:intergenic | 45.0% | |
| ACCGGATAAGGCTCAACATT+GGG | + | chr6.1:38598857-38598876 | None:intergenic | 45.0% | |
| ACTGGTGGTTGCTTAAGCAA+CGG | - | chr6.1:38596810-38596829 | MS.gene91000:intron | 45.0% | |
| AGTTGCTGGAGACAAGAAGA+AGG | - | chr6.1:38598535-38598554 | MS.gene91000:CDS | 45.0% | |
| ATCTGCTACATCTTCTAGCC+AGG | - | chr6.1:38595810-38595829 | MS.gene91000:CDS | 45.0% | |
| CATAGCTTCCCAAGAACACT+TGG | + | chr6.1:38596565-38596584 | None:intergenic | 45.0% | |
| CATGTGACAAATAGGCTAGG+AGG | - | chr6.1:38596929-38596948 | MS.gene91000:intron | 45.0% | |
| CCAATTCACCAAAGATAGGC+GGG | + | chr6.1:38596704-38596723 | None:intergenic | 45.0% | |
| CCGACAAAGCAAAGAAGAAC+CGG | - | chr6.1:38596760-38596779 | MS.gene91000:intron | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | + | chr6.1:38596763-38596782 | None:intergenic | 45.0% | |
| CGACAAAGCAAAGAAGAACC+GGG | - | chr6.1:38596761-38596780 | MS.gene91000:intron | 45.0% | |
| CGAGAATCTCTCGGATAATC+CGG | + | chr6.1:38596216-38596235 | None:intergenic | 45.0% | |
| CGATTCATCTTAAGGCCTAG+TGG | - | chr6.1:38596240-38596259 | MS.gene91000:intron | 45.0% | |
| CTAACCCTCAATCATGGTGA+AGG | - | chr6.1:38598626-38598645 | MS.gene91000:CDS | 45.0% | |
| CTCTTTCCATTAGGTTTCGG+AGG | + | chr6.1:38595682-38595701 | None:intergenic | 45.0% | |
| GAGAATCTCTCGGATAATCC+GGG | + | chr6.1:38596215-38596234 | None:intergenic | 45.0% | |
| GATAAAACTCTGGTGAGGGA+AGG | + | chr6.1:38597335-38597354 | None:intergenic | 45.0% | |
| GCAGTAGAAATGACAGGCAT+CGG | + | chr6.1:38595772-38595791 | None:intergenic | 45.0% | |
| GCTCCTCATATGACCTTTGA+CGG | + | chr6.1:38598769-38598788 | None:intergenic | 45.0% | |
| GGATGATGAGGATCATGATG+AGG | - | chr6.1:38598886-38598905 | MS.gene91000:CDS | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | - | chr6.1:38596664-38596683 | MS.gene91000:intron | 45.0% | |
| GTAAATGATAGGTCGGAGGA+AGG | + | chr6.1:38595960-38595979 | None:intergenic | 45.0% | |
| GTAACTTGGCTGCTAACTAC+CGG | - | chr6.1:38598576-38598595 | MS.gene91000:CDS | 45.0% | |
| GTTGCTGGAGACAAGAAGAA+GGG | - | chr6.1:38598536-38598555 | MS.gene91000:CDS | 45.0% | |
| TACCGGATAAGGCTCAACAT+TGG | + | chr6.1:38598858-38598877 | None:intergenic | 45.0% | |
| TACTTAGAAGAGCCCGTATG+CGG | - | chr6.1:38596643-38596662 | MS.gene91000:intron | 45.0% | |
| TAGATGTCTTGCGGCAACTT+TGG | - | chr6.1:38597758-38597777 | MS.gene91000:CDS | 45.0% | |
| TCATCATCCTCCTCATCTAC+CGG | + | chr6.1:38598875-38598894 | None:intergenic | 45.0% | |
| TCTGCTACATCTTCTAGCCA+GGG | - | chr6.1:38595811-38595830 | MS.gene91000:CDS | 45.0% | |
| TTGATGCAACACTACCCTTC+CGG | + | chr6.1:38598598-38598617 | None:intergenic | 45.0% | |
| TTGCCCTTGCTCTTTCCATT+AGG | + | chr6.1:38595691-38595710 | None:intergenic | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | + | chr6.1:38596659-38596678 | None:intergenic | 45.0% | |
| TTGTGATATCAGCAGCAACG+AGG | + | chr6.1:38597589-38597608 | None:intergenic | 45.0% | |
| TTTCTTGTTGGGGTTGTGGT+GGG | + | chr6.1:38596143-38596162 | None:intergenic | 45.0% | |
| ! | CAGCTTTTTGCCTTCCAAAC+CGG | - | chr6.1:38596341-38596360 | MS.gene91000:intron | 45.0% |
| ! | GCTATACGGTCTTGGTAACT+TGG | - | chr6.1:38598562-38598581 | MS.gene91000:CDS | 45.0% |
| ! | TCCCAATGTTGAGCCTTATC+CGG | - | chr6.1:38598853-38598872 | MS.gene91000:CDS | 45.0% |
| ! | TTGAACAGGAGGAGTATGAC+CGG | - | chr6.1:38598444-38598463 | MS.gene91000:CDS | 45.0% |
| ! | TTTTCTTGTTGGGGTTGTGG+TGG | + | chr6.1:38596144-38596163 | None:intergenic | 45.0% |
| !! | CTCGTCGTCGATTCATCTTA+AGG | - | chr6.1:38596232-38596251 | MS.gene91000:intron | 45.0% |
| !! | CTTGCCGAGGCTATTTCTAA+TGG | - | chr6.1:38598470-38598489 | MS.gene91000:CDS | 45.0% |
| !! | GGAGGGATTTGTTGTTGTTG+GGG | + | chr6.1:38596018-38596037 | None:intergenic | 45.0% |
| !! | GGATTTGTTGTTGTTGGGGA+AGG | + | chr6.1:38596014-38596033 | None:intergenic | 45.0% |
| !! | GGGATTTGTTGTAGGGAAGA+AGG | + | chr6.1:38596054-38596073 | None:intergenic | 45.0% |
| !! | GTGGAGGGATTTGTTGTTGT+TGG | + | chr6.1:38596020-38596039 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+AGG | + | chr6.1:38596023-38596042 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | + | chr6.1:38596035-38596054 | None:intergenic | 45.0% |
| !!! | GAAGAAGGTGGGTTTTGTTG+TGG | + | chr6.1:38596039-38596058 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | + | chr6.1:38596099-38596118 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | + | chr6.1:38596101-38596120 | None:intergenic | 45.0% |
| !! | AAATAATAACAAAATATTTA+AGG | + | chr6.1:38598426-38598445 | None:intergenic | 5.0% |
| AAGGGAGGATGCATTCACAC+TGG | - | chr6.1:38596792-38596811 | MS.gene91000:intron | 50.0% | |
| AAGGTCATATGAGGAGCAGC+TGG | - | chr6.1:38598772-38598791 | MS.gene91000:CDS | 50.0% | |
| AATTACCGCGGACAGATGGT+TGG | + | chr6.1:38597677-38597696 | None:intergenic | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | - | chr6.1:38596678-38596697 | MS.gene91000:intron | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | - | chr6.1:38596673-38596692 | MS.gene91000:intron | 50.0% | |
| AGGACCCTTCACCATGATTG+AGG | + | chr6.1:38598634-38598653 | None:intergenic | 50.0% | |
| ATAGGCTAGGAGGTTACGTC+GGG | - | chr6.1:38596939-38596958 | MS.gene91000:intron | 50.0% | |
| ATGATAGGTCGGAGGAAGGA+AGG | + | chr6.1:38595956-38595975 | None:intergenic | 50.0% | |
| ATGGCACCCTACCTCCTTAT+GGG | - | chr6.1:38595929-38595948 | MS.gene91000:CDS | 50.0% | |
| CCATATGCTCAGATCAGACG+CGG | + | chr6.1:38597931-38597950 | None:intergenic | 50.0% | |
| CCCGCCTATCTTTGGTGAAT+TGG | - | chr6.1:38596701-38596720 | MS.gene91000:intron | 50.0% | |
| CCTTCATCATGACACGTGAG+CGG | - | chr6.1:38597803-38597822 | MS.gene91000:CDS | 50.0% | |
| CGTCTGATCTGAGCATATGG+AGG | - | chr6.1:38597931-38597950 | MS.gene91000:CDS | 50.0% | |
| GAAAATGTGGTCGAAGAGGG+TGG | - | chr6.1:38596159-38596178 | MS.gene91000:intron | 50.0% | |
| GAAGGTCCCATAAGGAGGTA+GGG | + | chr6.1:38595938-38595957 | None:intergenic | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | + | chr6.1:38596363-38596382 | None:intergenic | 50.0% | |
| GCAACAGATGGCAAGTCAAG+CGG | - | chr6.1:38598721-38598740 | MS.gene91000:CDS | 50.0% | |
| GGACCCTTCACCATGATTGA+GGG | + | chr6.1:38598633-38598652 | None:intergenic | 50.0% | |
| GGTAGATGAGGAGGATGATG+AGG | - | chr6.1:38598874-38598893 | MS.gene91000:CDS | 50.0% | |
| GGTGGTAAATGATAGGTCGG+AGG | + | chr6.1:38595964-38595983 | None:intergenic | 50.0% | |
| TAAAAGCGGCGCACTAGTGT+GGG | + | chr6.1:38598831-38598850 | None:intergenic | 50.0% | |
| TATGGCACCCTACCTCCTTA+TGG | - | chr6.1:38595928-38595947 | MS.gene91000:CDS | 50.0% | |
| TCCTCCTCATCTACCGGATA+AGG | + | chr6.1:38598869-38598888 | None:intergenic | 50.0% | |
| TCTGGTGAGGGAAGGAGTTA+GGG | + | chr6.1:38597327-38597346 | None:intergenic | 50.0% | |
| TGAATAAGCTCCCGCATCTC+TGG | + | chr6.1:38598677-38598696 | None:intergenic | 50.0% | |
| TGTCTCCTCAAACCGCATAC+GGG | + | chr6.1:38596658-38596677 | None:intergenic | 50.0% | |
| TTAAAAGCGGCGCACTAGTG+TGG | + | chr6.1:38598832-38598851 | None:intergenic | 50.0% | |
| TTGGCTGCTAACTACCGGAA+GGG | - | chr6.1:38598581-38598600 | MS.gene91000:CDS | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | + | chr6.1:38595895-38595914 | None:intergenic | 50.0% |
| ! | CAGAGCTGCTGCACGTTTTT+CGG | - | chr6.1:38596617-38596636 | MS.gene91000:intron | 50.0% |
| ! | GGTAGGGTGCCATAATATCC+AGG | + | chr6.1:38595922-38595941 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAACAGGT+GGG | + | chr6.1:38596089-38596108 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGTTGTGGT+GGG | + | chr6.1:38596116-38596135 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | + | chr6.1:38595896-38595915 | None:intergenic | 50.0% |
| ! | TGAGCCTTATCCGGTAGATG+AGG | - | chr6.1:38598862-38598881 | MS.gene91000:CDS | 50.0% |
| ! | TGTGGTGGGACTGAATATGG+TGG | + | chr6.1:38595982-38596001 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAACAGG+TGG | + | chr6.1:38596090-38596109 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | + | chr6.1:38596117-38596136 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | + | chr6.1:38595996-38596015 | None:intergenic | 50.0% |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | - | chr6.1:38596722-38596741 | MS.gene91000:intron | 50.0% |
| !!! | ACAGGTGGGTTTTGTTGTGG+AGG | + | chr6.1:38596075-38596094 | None:intergenic | 50.0% |
| !!! | CAGGTGGGTTTTGTTGTGGA+GGG | + | chr6.1:38596074-38596093 | None:intergenic | 50.0% |
| !!! | GAAGGTGGGTTTTGTTGTGG+AGG | + | chr6.1:38596036-38596055 | None:intergenic | 50.0% |
| !!! | GGAACAGGTGGGTTTTGTTG+TGG | + | chr6.1:38596078-38596097 | None:intergenic | 50.0% |
| AAATAGCCTCGGCAAGCTGC+CGG | + | chr6.1:38598466-38598485 | None:intergenic | 55.0% | |
| AAGAGCCCGTATGCGGTTTG+AGG | - | chr6.1:38596650-38596669 | MS.gene91000:intron | 55.0% | |
| AATACTGCGACGAGCGTGCT+AGG | - | chr6.1:38597013-38597032 | MS.gene91000:intron | 55.0% | |
| AATGTGGTCGAAGAGGGTGG+TGG | - | chr6.1:38596162-38596181 | MS.gene91000:intron | 55.0% | |
| AGCAAAGAAGAACCGGGCGT+CGG | - | chr6.1:38596767-38596786 | MS.gene91000:intron | 55.0% | |
| AGGAGCAGCTGGCACAGTTT+AGG | - | chr6.1:38598783-38598802 | MS.gene91000:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | + | chr6.1:38596690-38596709 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | - | chr6.1:38595901-38595920 | MS.gene91000:CDS | 55.0% | |
| CCGCGTCTGATCTGAGCATA+TGG | - | chr6.1:38597928-38597947 | MS.gene91000:CDS | 55.0% | |
| CCGCTCACGTGTCATGATGA+AGG | + | chr6.1:38597806-38597825 | None:intergenic | 55.0% | |
| CTCTGGTGAGGGAAGGAGTT+AGG | + | chr6.1:38597328-38597347 | None:intergenic | 55.0% | |
| CTTCTAGCCAGGGTTCACCT+GGG | - | chr6.1:38595821-38595840 | MS.gene91000:CDS | 55.0% | |
| CTTGGCTGCTAACTACCGGA+AGG | - | chr6.1:38598580-38598599 | MS.gene91000:CDS | 55.0% | |
| GAAAGAGCAAGGGCAACAGC+AGG | - | chr6.1:38595695-38595714 | MS.gene91000:CDS | 55.0% | |
| GATTGCTTCAGCAGCCGGTT+TGG | + | chr6.1:38596358-38596377 | None:intergenic | 55.0% | |
| GCCTTATCCGGTAGATGAGG+AGG | - | chr6.1:38598865-38598884 | MS.gene91000:CDS | 55.0% | |
| GGAAGGAAGGTCCCATAAGG+AGG | + | chr6.1:38595943-38595962 | None:intergenic | 55.0% | |
| GGAAGGTCCCATAAGGAGGT+AGG | + | chr6.1:38595939-38595958 | None:intergenic | 55.0% | |
| GGAGGAAGGAAGGTCCCATA+AGG | + | chr6.1:38595946-38595965 | None:intergenic | 55.0% | |
| GGAGGATGCATTCACACTGG+TGG | - | chr6.1:38596795-38596814 | MS.gene91000:intron | 55.0% | |
| GGGCACATGTAAGTGGGATG+AGG | + | chr6.1:38595889-38595908 | None:intergenic | 55.0% | |
| GTTGGGGCCAGACCACAATT+CGG | + | chr6.1:38597154-38597173 | None:intergenic | 55.0% | |
| TAGCACGCTCGTCGCAGTAT+TGG | + | chr6.1:38597014-38597033 | None:intergenic | 55.0% | |
| TAGTGTACCTGCTCCTGCGA+CGG | - | chr6.1:38595855-38595874 | MS.gene91000:CDS | 55.0% | |
| TCTTCTAGCCAGGGTTCACC+TGG | - | chr6.1:38595820-38595839 | MS.gene91000:CDS | 55.0% | |
| TGCATCCAACCATCTGTCCG+CGG | - | chr6.1:38597669-38597688 | MS.gene91000:intron | 55.0% | |
| TTTAGGCAAGCCCAGGCTCA+AGG | - | chr6.1:38598800-38598819 | MS.gene91000:CDS | 55.0% | |
| ! | AGGAGCAGGTACACTAGCCT+GGG | + | chr6.1:38595851-38595870 | None:intergenic | 55.0% |
| ! | GTTGTTGTTGGGGAAGGGGA+AGG | + | chr6.1:38596008-38596027 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | + | chr6.1:38596000-38596019 | None:intergenic | 55.0% |
| !! | AAGAACCGGGCGTCGGAAAA+GGG | - | chr6.1:38596774-38596793 | MS.gene91000:intron | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | - | chr6.1:38596449-38596468 | MS.gene91000:intron | 55.0% |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | + | chr6.1:38595997-38596016 | None:intergenic | 55.0% |
| !! | TGGATTGGCCCGCCTATCTT+TGG | - | chr6.1:38596693-38596712 | MS.gene91000:intron | 55.0% |
| CAGGAGCAGGTACACTAGCC+TGG | + | chr6.1:38595852-38595871 | None:intergenic | 60.0% | |
| CTGAGCTGACGCCAGAGATG+CGG | - | chr6.1:38598663-38598682 | MS.gene91000:CDS | 60.0% | |
| GCAAGGGCAACAGCAGGAAG+CGG | - | chr6.1:38595701-38595720 | MS.gene91000:CDS | 60.0% | |
| GGCACAGTTTAGGCAAGCCC+AGG | - | chr6.1:38598793-38598812 | MS.gene91000:CDS | 60.0% | |
| TGAGCTGACGCCAGAGATGC+GGG | - | chr6.1:38598664-38598683 | MS.gene91000:CDS | 60.0% | |
| ! | AGCAGGTACACTAGCCTGGG+AGG | + | chr6.1:38595848-38595867 | None:intergenic | 60.0% |
| ! | ATCCTCCCTTTTCCGACGCC+CGG | + | chr6.1:38596782-38596801 | None:intergenic | 60.0% |
| ! | CTTAGTGGACGCAGCGACAG+AGG | - | chr6.1:38595735-38595754 | MS.gene91000:CDS | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | - | chr6.1:38596731-38596750 | MS.gene91000:intron | 60.0% |
| !! | ACGCTCGTCGCAGTATTGGC+CGG | + | chr6.1:38597010-38597029 | None:intergenic | 60.0% |
| !! | GAAGAACCGGGCGTCGGAAA+AGG | - | chr6.1:38596773-38596792 | MS.gene91000:intron | 60.0% |
| !! | GCTTCAGCAGCCGGTTTGGA+AGG | + | chr6.1:38596354-38596373 | None:intergenic | 60.0% |
| AAGCGGCGCACTAGTGTGGG+AGG | + | chr6.1:38598828-38598847 | None:intergenic | 65.0% | |
| AGCGGCGCACTAGTGTGGGA+GGG | + | chr6.1:38598827-38598846 | None:intergenic | 65.0% | |
| CGCATCTCTGGCGTCAGCTC+AGG | + | chr6.1:38598665-38598684 | None:intergenic | 65.0% | |
| GTATGACCGGCAGCTTGCCG+AGG | - | chr6.1:38598457-38598476 | MS.gene91000:CDS | 65.0% | |
| GTGGGAGGGACCTTGAGCCT+GGG | + | chr6.1:38598813-38598832 | None:intergenic | 65.0% | |
| TGAGGAGCAGAAGCCGTCGC+AGG | + | chr6.1:38595871-38595890 | None:intergenic | 65.0% | |
| TGGCGTCAGCTCAGGCTGCT+GGG | + | chr6.1:38598657-38598676 | None:intergenic | 65.0% | |
| TGTGGGAGGGACCTTGAGCC+TGG | + | chr6.1:38598814-38598833 | None:intergenic | 65.0% | |
| ! | ACACTAGCCTGGGAGGACCC+AGG | + | chr6.1:38595841-38595860 | None:intergenic | 65.0% |
| ! | CGAGCGTGCTAGGAGTGTGC+AGG | - | chr6.1:38597023-38597042 | MS.gene91000:intron | 65.0% |
| ! | CGGAGAGCACGCTGAGCGTA+TGG | - | chr6.1:38596830-38596849 | MS.gene91000:intron | 65.0% |
| !! | AACCGGGCGTCGGAAAAGGG+AGG | - | chr6.1:38596777-38596796 | MS.gene91000:intron | 65.0% |
| !! | CGAAGAGGGTGGTGGAGAGC+TGG | - | chr6.1:38596170-38596189 | MS.gene91000:intron | 65.0% |
| CGTCAGCTCAGGCTGCTGGG+AGG | + | chr6.1:38598654-38598673 | None:intergenic | 70.0% | |
| CTGGCGTCAGCTCAGGCTGC+TGG | + | chr6.1:38598658-38598677 | None:intergenic | 70.0% | |
| GCAGAAGCCGTCGCAGGAGC+AGG | + | chr6.1:38595865-38595884 | None:intergenic | 70.0% | |
| GGGAGGACCCAGGTGAACCC+TGG | + | chr6.1:38595831-38595850 | None:intergenic | 70.0% | |
| GGGTTCACCTGGGTCCTCCC+AGG | - | chr6.1:38595831-38595850 | MS.gene91000:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 38595676 | 38598913 | 38595676 | ID=MS.gene91000 |
| chr6.1 | mRNA | 38595676 | 38598913 | 38595676 | ID=MS.gene91000.t1;Parent=MS.gene91000 |
| chr6.1 | exon | 38598321 | 38598913 | 38598321 | ID=MS.gene91000.t1.exon1;Parent=MS.gene91000.t1 |
| chr6.1 | CDS | 38598321 | 38598913 | 38598321 | ID=cds.MS.gene91000.t1;Parent=MS.gene91000.t1 |
| chr6.1 | exon | 38598119 | 38598245 | 38598119 | ID=MS.gene91000.t1.exon2;Parent=MS.gene91000.t1 |
| chr6.1 | CDS | 38598119 | 38598245 | 38598119 | ID=cds.MS.gene91000.t1;Parent=MS.gene91000.t1 |
| chr6.1 | exon | 38597738 | 38598028 | 38597738 | ID=MS.gene91000.t1.exon3;Parent=MS.gene91000.t1 |
| chr6.1 | CDS | 38597738 | 38598028 | 38597738 | ID=cds.MS.gene91000.t1;Parent=MS.gene91000.t1 |
| chr6.1 | exon | 38597545 | 38597646 | 38597545 | ID=MS.gene91000.t1.exon4;Parent=MS.gene91000.t1 |
| chr6.1 | CDS | 38597545 | 38597646 | 38597545 | ID=cds.MS.gene91000.t1;Parent=MS.gene91000.t1 |
| chr6.1 | exon | 38595676 | 38596137 | 38595676 | ID=MS.gene91000.t1.exon5;Parent=MS.gene91000.t1 |
| chr6.1 | CDS | 38595676 | 38596137 | 38595676 | ID=cds.MS.gene91000.t1;Parent=MS.gene91000.t1 |
| Gene Sequence |
| Protein sequence |
