Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91189.t1 | XP_003588431.1 | 56.8 | 477 | 33 | 2 | 1 | 477 | 1 | 304 | 2.90E-126 | 462.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91189.t1 | P52423 | 48.3 | 478 | 77 | 4 | 1 | 476 | 1 | 310 | 1.3e-103 | 378.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91189.t1 | G7I264 | 56.8 | 477 | 33 | 2 | 1 | 477 | 1 | 304 | 2.1e-126 | 462.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050442 | MS.gene91189 | 0.806681 | 7.31E-50 | -1.69E-46 |
| MS.gene050586 | MS.gene91189 | 0.815688 | 8.13E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene91189 | 0.812011 | 5.25E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91189.t1 | MTR_1g007170 | 96.571 | 175 | 6 | 0 | 303 | 477 | 130 | 304 | 1.15e-120 | 355 |
| MS.gene91189.t1 | MTR_1g007170 | 75.556 | 135 | 27 | 1 | 1 | 135 | 1 | 129 | 3.15e-43 | 155 |
| MS.gene91189.t1 | MTR_5g012850 | 27.632 | 152 | 100 | 3 | 308 | 459 | 198 | 339 | 9.73e-12 | 66.6 |
| MS.gene91189.t1 | MTR_7g016670 | 32.174 | 115 | 73 | 1 | 345 | 459 | 205 | 314 | 1.18e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91189.t1 | AT1G31220 | 71.910 | 178 | 49 | 1 | 302 | 478 | 115 | 292 | 9.75e-90 | 276 |
| MS.gene91189.t1 | AT5G47435 | 25.828 | 151 | 102 | 4 | 309 | 459 | 173 | 313 | 1.16e-11 | 66.2 |
| MS.gene91189.t1 | AT5G47435 | 25.828 | 151 | 102 | 4 | 309 | 459 | 173 | 313 | 1.16e-11 | 66.2 |
| MS.gene91189.t1 | AT4G17360 | 29.565 | 115 | 76 | 1 | 345 | 459 | 209 | 318 | 1.47e-11 | 65.9 |
Find 110 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCACTTCTTCCAGCTTT+TGG | 0.109676 | 1.3:-12260531 | MS.gene91189:CDS |
| CTTTCTTCCCTCTTTGTTTC+GGG | 0.109940 | 1.3:-12261807 | MS.gene91189:CDS |
| GAAATTCAACATATTGTTTC+TGG | 0.142749 | 1.3:-12263149 | MS.gene91189:CDS |
| TCAGCTTCTGCAACATTCTA+TGG | 0.179694 | 1.3:-12261745 | MS.gene91189:CDS |
| TTTGGAGGCAAGGGCTTCTA+TGG | 0.237243 | 1.3:-12260513 | MS.gene91189:CDS |
| GCCCCTGTTCTTTGTCGTTT+TGG | 0.241822 | 1.3:-12261713 | MS.gene91189:CDS |
| TCTTTCTTCCCTCTTTGTTT+CGG | 0.250022 | 1.3:-12261808 | MS.gene91189:CDS |
| GTCGAACTTTAAATCAATTC+AGG | 0.272350 | 1.3:-12262829 | MS.gene91189:CDS |
| TTGTAATGCCTTGACTCTTT+TGG | 0.282092 | 1.3:-12262034 | MS.gene91189:CDS |
| CTACCACCTCAACATATAAT+TGG | 0.283524 | 1.3:+12259836 | None:intergenic |
| AGTGGTTTAACATGCAGTTT+TGG | 0.294224 | 1.3:-12262527 | MS.gene91189:CDS |
| TCATGGAGATGTCGTTATAT+TGG | 0.294377 | 1.3:-12262784 | MS.gene91189:CDS |
| AAGACGGATGCTATAATTCT+AGG | 0.302619 | 1.3:-12262968 | MS.gene91189:CDS |
| CTATTATAAGGAGTGTTATA+AGG | 0.316453 | 1.3:-12262279 | MS.gene91189:CDS |
| ATAAATCAGTAAGTTTCATT+AGG | 0.337746 | 1.3:+12259745 | None:intergenic |
| GGATGTTAAATATAGATCTT+TGG | 0.341940 | 1.3:+12260556 | None:intergenic |
| CAATTATGTGAATGAATAGA+AGG | 0.351665 | 1.3:+12263035 | None:intergenic |
| AAACCAAAACGACAAAGAAC+AGG | 0.352044 | 1.3:+12261710 | None:intergenic |
| ACTCTTGCAGCCAACTCTTC+TGG | 0.352935 | 1.3:+12260261 | None:intergenic |
| GAAGTGAAGGGGTAGTTATA+AGG | 0.373401 | 1.3:+12262738 | None:intergenic |
| GATGGTGTGGATGATAGTTT+TGG | 0.384017 | 1.3:+12263119 | None:intergenic |
| CACAAAACAGTAATTGCTTC+TGG | 0.385199 | 1.3:-12260480 | MS.gene91189:CDS |
| TATTACACAGAAGCACAAAA+TGG | 0.392582 | 1.3:+12262711 | None:intergenic |
| GCGGAGTATGCAAGACAAAA+TGG | 0.394486 | 1.3:-12260944 | MS.gene91189:CDS |
| TTGGTGGGAATTCTATTATA+AGG | 0.401312 | 1.3:-12262291 | MS.gene91189:CDS |
| TATGTGAAGACCGTATAGTT+TGG | 0.406325 | 1.3:-12259807 | MS.gene91189:CDS |
| GTGTAGCTGTGGCCTGTTGG+TGG | 0.413360 | 1.3:-12262307 | MS.gene91189:intron |
| AACAATATGTTGAATTTCCA+TGG | 0.420418 | 1.3:+12263154 | None:intergenic |
| ATAATTCTAGGAAGAAAGTA+TGG | 0.423450 | 1.3:-12262956 | MS.gene91189:CDS |
| GTCGATGAGCACTATGACAC+AGG | 0.428544 | 1.3:-12260330 | MS.gene91189:CDS |
| TCATCGACAAAATGAATTGT+AGG | 0.429485 | 1.3:+12260345 | None:intergenic |
| ACTTTGGGGAACACTATAAC+CGG | 0.432513 | 1.3:+12260917 | None:intergenic |
| TATGAAGAAGAAAGTAAAGA+AGG | 0.433616 | 1.3:+12263059 | None:intergenic |
| CAGCTTCTGCAACATTCTAT+GGG | 0.442417 | 1.3:-12261744 | MS.gene91189:CDS |
| TCCACACCATCAAATCCAAT+TGG | 0.449359 | 1.3:-12263107 | MS.gene91189:CDS |
| AAAGTAAAAGATGGAAATGA+TGG | 0.452711 | 1.3:-12260899 | MS.gene91189:CDS |
| AATTCAGGAGGCATCCAAAA+GGG | 0.459641 | 1.3:-12262814 | MS.gene91189:CDS |
| CATCTTTCCTCCAAACTATA+CGG | 0.459674 | 1.3:+12259797 | None:intergenic |
| ATAATAGAATTCCCACCAAC+AGG | 0.461549 | 1.3:+12262295 | None:intergenic |
| AAGCCCTTGCCTCCAAAAGC+TGG | 0.466123 | 1.3:+12260519 | None:intergenic |
| GTTTCGTGGCCGCATACGTT+AGG | 0.467963 | 1.3:-12262422 | MS.gene91189:CDS |
| TTGGAGGCAAGGGCTTCTAT+GGG | 0.474254 | 1.3:-12260512 | MS.gene91189:CDS |
| GCTGTGTTTGTGTCAGGTAG+AGG | 0.478395 | 1.3:-12262852 | MS.gene91189:CDS |
| AAGGCGGCTGTTGCTGTCGC+CGG | 0.480319 | 1.3:+12261767 | None:intergenic |
| GGTGTGTAGCTGTGGCCTGT+TGG | 0.481478 | 1.3:-12262310 | MS.gene91189:intron |
| GAGGTGAAAGCTCTGGTCAC+GGG | 0.486057 | 1.3:-12262891 | MS.gene91189:CDS |
| CAATTCAGGAGGCATCCAAA+AGG | 0.487226 | 1.3:-12262815 | MS.gene91189:CDS |
| CATAATTGTGATGTTTCAAG+TGG | 0.493285 | 1.3:-12263020 | MS.gene91189:CDS |
| ATATAGATCTTTGGTAAGCT+CGG | 0.496029 | 1.3:+12260565 | None:intergenic |
| ATTATATGTTGAGGTGGTAG+AGG | 0.496929 | 1.3:-12259833 | MS.gene91189:CDS |
| CGTATAGTTTGGAGGAAAGA+TGG | 0.508730 | 1.3:-12259796 | MS.gene91189:CDS |
| TCCAATTGGATTTGATGGTG+TGG | 0.509093 | 1.3:+12263106 | None:intergenic |
| CGATAAGCAACCGCAATTGT+CGG | 0.509487 | 1.3:+12262461 | None:intergenic |
| ACAATTGCGGTTGCTTATCG+TGG | 0.514465 | 1.3:-12262458 | MS.gene91189:CDS |
| TGTAGCTGTGGCCTGTTGGT+GGG | 0.514999 | 1.3:-12262306 | MS.gene91189:intron |
| GGTGTATCATTAGTAAGCAC+AGG | 0.519404 | 1.3:+12260282 | None:intergenic |
| AAGCTGGCTGTGTTTGTGTC+AGG | 0.522853 | 1.3:-12262858 | MS.gene91189:CDS |
| TAGCACTGAAATTGCATCGC+AGG | 0.524565 | 1.3:+12262491 | None:intergenic |
| GGAGCTTGAGGTGAAAGCTC+TGG | 0.525612 | 1.3:-12262898 | MS.gene91189:CDS |
| TGCAAGACAAAATGGTATAC+CGG | 0.527260 | 1.3:-12260936 | MS.gene91189:CDS |
| AAAATAACACAGGGCAAAGA+GGG | 0.530298 | 1.3:+12261997 | None:intergenic |
| ATGAAGAAGAAAGTAAAGAA+GGG | 0.531104 | 1.3:+12263060 | None:intergenic |
| GTGTTCCCCAAAGTAAAAGA+TGG | 0.533133 | 1.3:-12260908 | MS.gene91189:CDS |
| TTCTTCCCTCTTTGTTTCGG+GGG | 0.534781 | 1.3:-12261805 | MS.gene91189:CDS |
| AACCAAAACGACAAAGAACA+GGG | 0.539418 | 1.3:+12261711 | None:intergenic |
| CCAAAAGCTGGAAGAAGTGA+TGG | 0.542193 | 1.3:+12260531 | None:intergenic |
| AAGCTCTGGTCACGGGGAGA+AGG | 0.542427 | 1.3:-12262884 | MS.gene91189:CDS |
| GTGAAGACCGTATAGTTTGG+AGG | 0.542786 | 1.3:-12259804 | MS.gene91189:CDS |
| TTTCTTCCCTCTTTGTTTCG+GGG | 0.546466 | 1.3:-12261806 | MS.gene91189:CDS |
| ATATTGGTTACGAATAAAAG+TGG | 0.558197 | 1.3:-12262768 | MS.gene91189:CDS |
| TAATGATACACCAGAAGAGT+TGG | 0.559622 | 1.3:-12260271 | MS.gene91189:CDS |
| TGAGGTGAAAGCTCTGGTCA+CGG | 0.560105 | 1.3:-12262892 | MS.gene91189:CDS |
| AGACTCAAGCAAGGAGCTTG+AGG | 0.562301 | 1.3:-12262910 | MS.gene91189:CDS |
| ATGACCTTGTTGATACACTA+AGG | 0.562679 | 1.3:-12260865 | MS.gene91189:intron |
| CAGTAATTGCTTCTGGCGCA+AGG | 0.571944 | 1.3:-12260473 | MS.gene91189:intron |
| GGCTGCAAGAGTTCTAAGAA+AGG | 0.580282 | 1.3:-12260250 | MS.gene91189:intron |
| ACAAAATGGAAGTGAAGTGA+AGG | 0.584101 | 1.3:+12262725 | None:intergenic |
| GGAACACCAATTATATGTTG+AGG | 0.585512 | 1.3:-12259842 | MS.gene91189:CDS |
| CTGTGTTTGTGTCAGGTAGA+GGG | 0.585563 | 1.3:-12262851 | MS.gene91189:CDS |
| AAGGAGTGTTATAAGGAGTG+AGG | 0.589844 | 1.3:-12262272 | MS.gene91189:CDS |
| ATACTGTTTGAAGTTTGCAT+CGG | 0.592916 | 1.3:-12262072 | MS.gene91189:intron |
| TAGAATGTTGCAGAAGCTGA+AGG | 0.601309 | 1.3:+12261748 | None:intergenic |
| GAGTGAGGTGAGGATGACAG+TGG | 0.602041 | 1.3:-12262257 | MS.gene91189:CDS |
| AAAGAGGGAAGAAAGACGCT+TGG | 0.602069 | 1.3:+12261815 | None:intergenic |
| GTGTTATAAGGAGTGAGGTG+AGG | 0.605989 | 1.3:-12262267 | MS.gene91189:CDS |
| TAAGCTCGGATCAGTTCCGC+TGG | 0.608587 | 1.3:+12260579 | None:intergenic |
| CAGGGACAACACGCTGAGCA+AGG | 0.611137 | 1.3:+12260301 | None:intergenic |
| AGTGAGGTGAGGATGACAGT+GGG | 0.611761 | 1.3:-12262256 | MS.gene91189:intron |
| ATTCAGGAGGCATCCAAAAG+GGG | 0.615277 | 1.3:-12262813 | MS.gene91189:CDS |
| GAACTTTAAATCAATTCAGG+AGG | 0.617793 | 1.3:-12262826 | MS.gene91189:CDS |
| AATTATGTGAATGAATAGAA+GGG | 0.618217 | 1.3:+12263036 | None:intergenic |
| GTTCCGCTGGTATAAGCTTG+AGG | 0.620611 | 1.3:+12260592 | None:intergenic |
| CAAAATGGAAGTGAAGTGAA+GGG | 0.622847 | 1.3:+12262726 | None:intergenic |
| AGGTGAAAGCTCTGGTCACG+GGG | 0.632419 | 1.3:-12262890 | MS.gene91189:CDS |
| TGATGCTGCAGACTCAAGCA+AGG | 0.633931 | 1.3:-12262919 | MS.gene91189:CDS |
| GAACTGTTCCAAAAGAGTCA+AGG | 0.641155 | 1.3:+12262026 | None:intergenic |
| AAGCTGGAAGAAGTGATGGA+TGG | 0.645684 | 1.3:+12260535 | None:intergenic |
| ACACCAATTATATGTTGAGG+TGG | 0.646161 | 1.3:-12259839 | MS.gene91189:CDS |
| TTCAGGAGGCATCCAAAAGG+GGG | 0.649161 | 1.3:-12262812 | MS.gene91189:CDS |
| CTGACCTTAGTGTATCAACA+AGG | 0.651840 | 1.3:+12260861 | None:intergenic |
| GTTGGGAGTCCTAACGTATG+CGG | 0.668010 | 1.3:+12262413 | None:intergenic |
| GGTTGTGCACCGTTGCACAA+TGG | 0.669890 | 1.3:+12261836 | None:intergenic |
| CTACATGCGACCGACAATTG+CGG | 0.673812 | 1.3:-12262471 | MS.gene91189:CDS |
| TCGATGAGCACTATGACACA+GGG | 0.677693 | 1.3:-12260329 | MS.gene91189:CDS |
| ACCAAAACGACAAAGAACAG+GGG | 0.678435 | 1.3:+12261712 | None:intergenic |
| AAAATGGAAGTGAAGTGAAG+GGG | 0.680767 | 1.3:+12262727 | None:intergenic |
| GTGTATCATTAGTAAGCACA+GGG | 0.687483 | 1.3:+12260283 | None:intergenic |
| GAAGATGAGCCATTGTGCAA+CGG | 0.688320 | 1.3:-12261845 | MS.gene91189:CDS |
| AATGTTGCAGAAGCTGAAGG+CGG | 0.693678 | 1.3:+12261751 | None:intergenic |
| ATACCTCAAGCTTATACCAG+CGG | 0.718952 | 1.3:-12260595 | MS.gene91189:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGACAAATATATTAATTAA+AGG | + | chr1.3:12262942-12262961 | None:intergenic | 10.0% |
| !! | TAAAATAAAAAGAAAGAAAA+AGG | + | chr1.3:12261920-12261939 | None:intergenic | 10.0% |
| !! | TGACAAATATATTAATTAAA+GGG | + | chr1.3:12262941-12262960 | None:intergenic | 10.0% |
| !! | CATGAATACAATTTAATTAA+GGG | - | chr1.3:12262746-12262765 | MS.gene91189:CDS | 15.0% |
| !! | TCATGAATACAATTTAATTA+AGG | - | chr1.3:12262745-12262764 | MS.gene91189:CDS | 15.0% |
| !! | TTTCAAATATTCAATATCAA+AGG | + | chr1.3:12260768-12260787 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTCTTTGATTGA+AGG | - | chr1.3:12261524-12261543 | MS.gene91189:intron | 15.0% |
| !!! | TTATGCATGTATTTTAAAAA+AGG | - | chr1.3:12261797-12261816 | MS.gene91189:CDS | 15.0% |
| !!! | TTTTCTTCAATTTTAATTGA+TGG | - | chr1.3:12260302-12260321 | MS.gene91189:CDS | 15.0% |
| !! | AAATATTCAATATCAAAGGT+AGG | + | chr1.3:12260764-12260783 | None:intergenic | 20.0% |
| !! | AATTATGTGAATGAATAGAA+GGG | + | chr1.3:12259869-12259888 | None:intergenic | 20.0% |
| !! | ATTGTTATAATATTAGCTCA+TGG | - | chr1.3:12262235-12262254 | MS.gene91189:intron | 20.0% |
| !! | TATAATAGAAATTACACCTT+AGG | - | chr1.3:12261314-12261333 | MS.gene91189:intron | 20.0% |
| !!! | AATACTACTATAGCAATTTT+GGG | - | chr1.3:12261694-12261713 | MS.gene91189:intron | 20.0% |
| !!! | TAATACTACTATAGCAATTT+TGG | - | chr1.3:12261693-12261712 | MS.gene91189:intron | 20.0% |
| !!! | TTACTAATATCATTTAGCTT+AGG | - | chr1.3:12260235-12260254 | MS.gene91189:intron | 20.0% |
| !!! | TTGTTTTGATTTTCAAATTC+AGG | - | chr1.3:12263039-12263058 | MS.gene91189:CDS | 20.0% |
| !!! | TTTTGCTTAAGTTTTTTAAG+TGG | - | chr1.3:12260926-12260945 | MS.gene91189:CDS | 20.0% |
| ! | AAACAAATAGAGAAAAATGG+AGG | + | chr1.3:12261471-12261490 | None:intergenic | 25.0% |
| ! | AAAGTAAAAGATGGAAATGA+TGG | - | chr1.3:12262003-12262022 | MS.gene91189:intron | 25.0% |
| ! | ACTTAAGCAAAAAATAACAC+AGG | + | chr1.3:12260918-12260937 | None:intergenic | 25.0% |
| ! | ATGAAGAAGAAAGTAAAGAA+GGG | + | chr1.3:12259845-12259864 | None:intergenic | 25.0% |
| ! | CAATTATGTGAATGAATAGA+AGG | + | chr1.3:12259870-12259889 | None:intergenic | 25.0% |
| ! | CCAAAACAAATAGAGAAAAA+TGG | + | chr1.3:12261474-12261493 | None:intergenic | 25.0% |
| ! | CTTAAGCAAAAAATAACACA+GGG | + | chr1.3:12260917-12260936 | None:intergenic | 25.0% |
| ! | GAAATTCAACATATTGTTTC+TGG | - | chr1.3:12259753-12259772 | MS.gene91189:CDS | 25.0% |
| ! | GAAGAAGAATAAAAAACCTA+AGG | + | chr1.3:12261333-12261352 | None:intergenic | 25.0% |
| ! | GGATGTTAAATATAGATCTT+TGG | + | chr1.3:12262349-12262368 | None:intergenic | 25.0% |
| ! | TATGAAGAAGAAAGTAAAGA+AGG | + | chr1.3:12259846-12259865 | None:intergenic | 25.0% |
| ! | TCAATTAGTTAAGCTATCTT+GGG | - | chr1.3:12261496-12261515 | MS.gene91189:intron | 25.0% |
| ! | TCATGATTAAAGTTGTTCAA+TGG | + | chr1.3:12262731-12262750 | None:intergenic | 25.0% |
| ! | TCCCAAAACACAAAATTAAA+CGG | + | chr1.3:12261615-12261634 | None:intergenic | 25.0% |
| ! | TTCAATTAGTTAAGCTATCT+TGG | - | chr1.3:12261495-12261514 | MS.gene91189:intron | 25.0% |
| !! | ATAATTCTAGGAAGAAAGTA+TGG | - | chr1.3:12259946-12259965 | MS.gene91189:intron | 25.0% |
| !! | ATACTACTATAGCAATTTTG+GGG | - | chr1.3:12261695-12261714 | MS.gene91189:intron | 25.0% |
| !! | ATATTGGTTACGAATAAAAG+TGG | - | chr1.3:12260134-12260153 | MS.gene91189:intron | 25.0% |
| !! | ATCATTTCCATCTTTTACTT+TGG | + | chr1.3:12262004-12262023 | None:intergenic | 25.0% |
| !! | ATTTTCTGTGTTAGATTTTC+GGG | - | chr1.3:12262533-12262552 | MS.gene91189:intron | 25.0% |
| !! | CATTTTCTGTGTTAGATTTT+CGG | - | chr1.3:12262532-12262551 | MS.gene91189:intron | 25.0% |
| !! | TCATTTCCATCTTTTACTTT+GGG | + | chr1.3:12262003-12262022 | None:intergenic | 25.0% |
| !! | TGTAAACTTCGACATTTTTA+TGG | - | chr1.3:12262858-12262877 | MS.gene91189:CDS | 25.0% |
| !! | TTCAATGGTTTAAAATGACA+CGG | + | chr1.3:12262716-12262735 | None:intergenic | 25.0% |
| !!! | AGGTTTTTTATTCTTCTTCT+CGG | - | chr1.3:12261334-12261353 | MS.gene91189:intron | 25.0% |
| !!! | AGTGATGCTATTTTAATTAG+TGG | - | chr1.3:12261266-12261285 | MS.gene91189:intron | 25.0% |
| !!! | CCATTTTTCTCTATTTGTTT+TGG | - | chr1.3:12261471-12261490 | MS.gene91189:intron | 25.0% |
| !!! | CTATTATAAGGAGTGTTATA+AGG | - | chr1.3:12260623-12260642 | MS.gene91189:CDS | 25.0% |
| !!! | TGCATGTATTTTAAAAAAGG+AGG | - | chr1.3:12261800-12261819 | MS.gene91189:CDS | 25.0% |
| !!! | TTATTTTAATACCAGACTGT+GGG | - | chr1.3:12261932-12261951 | MS.gene91189:intron | 25.0% |
| !!! | TTTATTTTAATACCAGACTG+TGG | - | chr1.3:12261931-12261950 | MS.gene91189:intron | 25.0% |
| AAGAGAATAAGCACAAGAAA+TGG | + | chr1.3:12260798-12260817 | None:intergenic | 30.0% | |
| AATTAGTGGTTAAGTTACGT+TGG | - | chr1.3:12261280-12261299 | MS.gene91189:intron | 30.0% | |
| AGTATTAGTATAGCAGATAG+AGG | + | chr1.3:12261680-12261699 | None:intergenic | 30.0% | |
| ATATAGATCTTTGGTAAGCT+CGG | + | chr1.3:12262340-12262359 | None:intergenic | 30.0% | |
| ATTACACAAACTTCCACAAA+AGG | + | chr1.3:12262822-12262841 | None:intergenic | 30.0% | |
| ATTAGTGGTTAAGTTACGTT+GGG | - | chr1.3:12261281-12261300 | MS.gene91189:intron | 30.0% | |
| CAAAACAAGCAACTAATGAT+TGG | + | chr1.3:12263027-12263046 | None:intergenic | 30.0% | |
| CACTAGTCAAAGACTTTAAA+TGG | - | chr1.3:12262793-12262812 | MS.gene91189:CDS | 30.0% | |
| CAGAAAATTGAATTTCTCTG+AGG | - | chr1.3:12260697-12260716 | MS.gene91189:intron | 30.0% | |
| CATAATTGTGATGTTTCAAG+TGG | - | chr1.3:12259882-12259901 | MS.gene91189:intron | 30.0% | |
| CCCAAAACACAAAATTAAAC+GGG | + | chr1.3:12261614-12261633 | None:intergenic | 30.0% | |
| GAAACAAAAAGACAGAACAA+GGG | + | chr1.3:12261031-12261050 | None:intergenic | 30.0% | |
| GAACTTTAAATCAATTCAGG+AGG | - | chr1.3:12260076-12260095 | MS.gene91189:intron | 30.0% | |
| GCTATAACTAAATTCGCAAA+AGG | - | chr1.3:12262172-12262191 | MS.gene91189:intron | 30.0% | |
| GTATTAGTATAGCAGATAGA+GGG | + | chr1.3:12261679-12261698 | None:intergenic | 30.0% | |
| GTCGAACTTTAAATCAATTC+AGG | - | chr1.3:12260073-12260092 | MS.gene91189:intron | 30.0% | |
| GTCTAAGAACATAGTGATTA+AGG | - | chr1.3:12261745-12261764 | MS.gene91189:CDS | 30.0% | |
| GTTTGTGTAATAAAGTGCAT+TGG | - | chr1.3:12262831-12262850 | MS.gene91189:CDS | 30.0% | |
| TAAAATGACACGGTTTATTG+AGG | + | chr1.3:12262706-12262725 | None:intergenic | 30.0% | |
| TAAGAACATAGTGATTAAGG+TGG | - | chr1.3:12261748-12261767 | MS.gene91189:CDS | 30.0% | |
| TCATCGACAAAATGAATTGT+AGG | + | chr1.3:12262560-12262579 | None:intergenic | 30.0% | |
| TGAAACAAAAAGACAGAACA+AGG | + | chr1.3:12261032-12261051 | None:intergenic | 30.0% | |
| TTGGTGGGAATTCTATTATA+AGG | - | chr1.3:12260611-12260630 | MS.gene91189:CDS | 30.0% | |
| ! | AAAAATGGAGGAAAAGCATA+TGG | + | chr1.3:12261459-12261478 | None:intergenic | 30.0% |
| ! | ATACTGTTTGAAGTTTGCAT+CGG | - | chr1.3:12260830-12260849 | MS.gene91189:intron | 30.0% |
| ! | CATTAGGATTTTCTTTGCTT+CGG | + | chr1.3:12263144-12263163 | None:intergenic | 30.0% |
| ! | CATTTCCATCTTTTACTTTG+GGG | + | chr1.3:12262002-12262021 | None:intergenic | 30.0% |
| ! | CTTTAAATGGTAACCTTTTG+TGG | - | chr1.3:12262806-12262825 | MS.gene91189:CDS | 30.0% |
| ! | GGGAATTTTTGTATCTTGTT+GGG | - | chr1.3:12261631-12261650 | MS.gene91189:intron | 30.0% |
| ! | TATTACACAGAAGCACAAAA+TGG | + | chr1.3:12260194-12260213 | None:intergenic | 30.0% |
| ! | TGGGAATTTTTGTATCTTGT+TGG | - | chr1.3:12261630-12261649 | MS.gene91189:intron | 30.0% |
| ! | TGTTTTCCAATTGGATTTGA+TGG | + | chr1.3:12259804-12259823 | None:intergenic | 30.0% |
| !! | ACCCGTTTAATTTTGTGTTT+TGG | - | chr1.3:12261610-12261629 | MS.gene91189:intron | 30.0% |
| !! | CCCGTTTAATTTTGTGTTTT+GGG | - | chr1.3:12261611-12261630 | MS.gene91189:intron | 30.0% |
| !! | GAGAAAAGTTGTTTTCCAAT+TGG | + | chr1.3:12259813-12259832 | None:intergenic | 30.0% |
| !! | GTTGATTTTGTTCTATTAGC+TGG | - | chr1.3:12262284-12262303 | MS.gene91189:CDS | 30.0% |
| !! | GTTTTTGATTGAATGAGAGT+GGG | + | chr1.3:12260997-12261016 | None:intergenic | 30.0% |
| !! | TCTGTCTTTTTGTTTCAAGT+GGG | - | chr1.3:12261035-12261054 | MS.gene91189:intron | 30.0% |
| !! | TGTTTTTGATTGAATGAGAG+TGG | + | chr1.3:12260998-12261017 | None:intergenic | 30.0% |
| !! | TTCTGTCTTTTTGTTTCAAG+TGG | - | chr1.3:12261034-12261053 | MS.gene91189:intron | 30.0% |
| !!! | AAGTTTTTTAAGTGGTTGTC+TGG | - | chr1.3:12260934-12260953 | MS.gene91189:CDS | 30.0% |
| !!! | GGTTTTTTATTCTTCTTCTC+GGG | - | chr1.3:12261335-12261354 | MS.gene91189:intron | 30.0% |
| !!! | TATTTTAATACCAGACTGTG+GGG | - | chr1.3:12261933-12261952 | MS.gene91189:intron | 30.0% |
| !!! | TCATGGTTCATTTTTTCAAC+AGG | - | chr1.3:12262252-12262271 | MS.gene91189:intron | 30.0% |
| AAAAATAACACAGGGCAAAG+AGG | + | chr1.3:12260909-12260928 | None:intergenic | 35.0% | |
| AAAATAACACAGGGCAAAGA+GGG | + | chr1.3:12260908-12260927 | None:intergenic | 35.0% | |
| AAAATGGAAGTGAAGTGAAG+GGG | + | chr1.3:12260178-12260197 | None:intergenic | 35.0% | |
| AAACCAAAACGACAAAGAAC+AGG | + | chr1.3:12261195-12261214 | None:intergenic | 35.0% | |
| AACCAAAACGACAAAGAACA+GGG | + | chr1.3:12261194-12261213 | None:intergenic | 35.0% | |
| AACTGCATGTTAAACCACTA+TGG | + | chr1.3:12260374-12260393 | None:intergenic | 35.0% | |
| AAGACGGATGCTATAATTCT+AGG | - | chr1.3:12259934-12259953 | MS.gene91189:intron | 35.0% | |
| ACAAAATGGAAGTGAAGTGA+AGG | + | chr1.3:12260180-12260199 | None:intergenic | 35.0% | |
| ACACCAATTATATGTTGAGG+TGG | - | chr1.3:12263063-12263082 | MS.gene91189:CDS | 35.0% | |
| ACTCAGAAGTAAGAGGAAAA+TGG | + | chr1.3:12261430-12261449 | None:intergenic | 35.0% | |
| AGAAGTAAGAGGAAAATGGA+GGG | + | chr1.3:12261426-12261445 | None:intergenic | 35.0% | |
| ATAATAGAATTCCCACCAAC+AGG | + | chr1.3:12260610-12260629 | None:intergenic | 35.0% | |
| ATGACCTTGTTGATACACTA+AGG | - | chr1.3:12262037-12262056 | MS.gene91189:CDS | 35.0% | |
| ATTATATGTTGAGGTGGTAG+AGG | - | chr1.3:12263069-12263088 | MS.gene91189:CDS | 35.0% | |
| CAAAATGGAAGTGAAGTGAA+GGG | + | chr1.3:12260179-12260198 | None:intergenic | 35.0% | |
| CACAAAACAGTAATTGCTTC+TGG | - | chr1.3:12262422-12262441 | MS.gene91189:CDS | 35.0% | |
| CATCTTTCCTCCAAACTATA+CGG | + | chr1.3:12263108-12263127 | None:intergenic | 35.0% | |
| CTACCACCTCAACATATAAT+TGG | + | chr1.3:12263069-12263088 | None:intergenic | 35.0% | |
| GGAACACCAATTATATGTTG+AGG | - | chr1.3:12263060-12263079 | MS.gene91189:CDS | 35.0% | |
| GTGTATCATTAGTAAGCACA+GGG | + | chr1.3:12262622-12262641 | None:intergenic | 35.0% | |
| TAATGATACACCAGAAGAGT+TGG | - | chr1.3:12262631-12262650 | MS.gene91189:intron | 35.0% | |
| TATGTGAAGACCGTATAGTT+TGG | - | chr1.3:12263095-12263114 | MS.gene91189:CDS | 35.0% | |
| TCACATGTGACACATGATAT+TGG | - | chr1.3:12261848-12261867 | MS.gene91189:CDS | 35.0% | |
| TCATGGAGATGTCGTTATAT+TGG | - | chr1.3:12260118-12260137 | MS.gene91189:intron | 35.0% | |
| TGCAAGACAAAATGGTATAC+CGG | - | chr1.3:12261966-12261985 | MS.gene91189:intron | 35.0% | |
| TGCTTATCGTGGAAAAATTG+CGG | - | chr1.3:12260455-12260474 | MS.gene91189:intron | 35.0% | |
| TTGGGATTTATGTTTGCAAG+CGG | - | chr1.3:12261649-12261668 | MS.gene91189:intron | 35.0% | |
| ! | AGTGGTTTAACATGCAGTTT+TGG | - | chr1.3:12260375-12260394 | MS.gene91189:intron | 35.0% |
| ! | ATCAGCATTGGGAAAAAAGA+CGG | - | chr1.3:12259918-12259937 | MS.gene91189:intron | 35.0% |
| ! | CTTTTTACCCTATCAGCATT+GGG | - | chr1.3:12259907-12259926 | MS.gene91189:intron | 35.0% |
| ! | GTGGTTTAACATGCAGTTTT+GGG | - | chr1.3:12260376-12260395 | MS.gene91189:intron | 35.0% |
| ! | TCTTTCTTCCCTCTTTGTTT+CGG | - | chr1.3:12261094-12261113 | MS.gene91189:intron | 35.0% |
| ! | TGGTTTAACATGCAGTTTTG+GGG | - | chr1.3:12260377-12260396 | MS.gene91189:intron | 35.0% |
| ! | TTGTAATGCCTTGACTCTTT+TGG | - | chr1.3:12260868-12260887 | MS.gene91189:CDS | 35.0% |
| !! | ATTTTAATACCAGACTGTGG+GGG | - | chr1.3:12261934-12261953 | MS.gene91189:intron | 35.0% |
| !!! | CTTTTTTCCCAATGCTGATA+GGG | + | chr1.3:12259917-12259936 | None:intergenic | 35.0% |
| !!! | TCTTTTTTCCCAATGCTGAT+AGG | + | chr1.3:12259918-12259937 | None:intergenic | 35.0% |
| !!! | TGGTTCATTTTTTCAACAGG+AGG | - | chr1.3:12262255-12262274 | MS.gene91189:intron | 35.0% |
| AATTAATCACACCGCGGATT+AGG | + | chr1.3:12260530-12260549 | None:intergenic | 40.0% | |
| ACCAAAACGACAAAGAACAG+GGG | + | chr1.3:12261193-12261212 | None:intergenic | 40.0% | |
| AGACAAAGAGAGAAGGATAC+TGG | + | chr1.3:12261238-12261257 | None:intergenic | 40.0% | |
| AGAGCTTACTTGTATCCAGA+AGG | + | chr1.3:12261383-12261402 | None:intergenic | 40.0% | |
| ATACCTCAAGCTTATACCAG+CGG | - | chr1.3:12262307-12262326 | MS.gene91189:intron | 40.0% | |
| CAGAAGTAAGAGGAAAATGG+AGG | + | chr1.3:12261427-12261446 | None:intergenic | 40.0% | |
| CAGCTTCTGCAACATTCTAT+GGG | - | chr1.3:12261158-12261177 | MS.gene91189:intron | 40.0% | |
| CGTATAGTTTGGAGGAAAGA+TGG | - | chr1.3:12263106-12263125 | MS.gene91189:CDS | 40.0% | |
| CTGACCTTAGTGTATCAACA+AGG | + | chr1.3:12262044-12262063 | None:intergenic | 40.0% | |
| GAACTGTTCCAAAAGAGTCA+AGG | + | chr1.3:12260879-12260898 | None:intergenic | 40.0% | |
| GAAGTGAAGGGGTAGTTATA+AGG | + | chr1.3:12260167-12260186 | None:intergenic | 40.0% | |
| GGTGTATCATTAGTAAGCAC+AGG | + | chr1.3:12262623-12262642 | None:intergenic | 40.0% | |
| GTGTTCCCCAAAGTAAAAGA+TGG | - | chr1.3:12261994-12262013 | MS.gene91189:intron | 40.0% | |
| TAGAATGTTGCAGAAGCTGA+AGG | + | chr1.3:12261157-12261176 | None:intergenic | 40.0% | |
| TAGTATAGCAGATAGAGGGA+TGG | + | chr1.3:12261675-12261694 | None:intergenic | 40.0% | |
| TATCCTTCTCTCTTTGTCTG+CGG | - | chr1.3:12261239-12261258 | MS.gene91189:intron | 40.0% | |
| TCAGCTTCTGCAACATTCTA+TGG | - | chr1.3:12261157-12261176 | MS.gene91189:intron | 40.0% | |
| TCCACACCATCAAATCCAAT+TGG | - | chr1.3:12259795-12259814 | MS.gene91189:CDS | 40.0% | |
| ! | ACTTTGGGGAACACTATAAC+CGG | + | chr1.3:12261988-12262007 | None:intergenic | 40.0% |
| ! | CTTTCTTCCCTCTTTGTTTC+GGG | - | chr1.3:12261095-12261114 | MS.gene91189:intron | 40.0% |
| ! | GATGGTGTGGATGATAGTTT+TGG | + | chr1.3:12259786-12259805 | None:intergenic | 40.0% |
| ! | GCTTTTTACCCTATCAGCAT+TGG | - | chr1.3:12259906-12259925 | MS.gene91189:intron | 40.0% |
| ! | TTTCTTCCCTCTTTGTTTCG+GGG | - | chr1.3:12261096-12261115 | MS.gene91189:intron | 40.0% |
| ! | TTTTCTTTGCTTCGGATGAG+AGG | + | chr1.3:12263136-12263155 | None:intergenic | 40.0% |
| !! | AAGGAGTGTTATAAGGAGTG+AGG | - | chr1.3:12260630-12260649 | MS.gene91189:CDS | 40.0% |
| !! | AATTCAGGAGGCATCCAAAA+GGG | - | chr1.3:12260088-12260107 | MS.gene91189:intron | 40.0% |
| !! | TCCAATTGGATTTGATGGTG+TGG | + | chr1.3:12259799-12259818 | None:intergenic | 40.0% |
| !!! | ACTATAGCAATTTTGGGGTC+CGG | - | chr1.3:12261700-12261719 | MS.gene91189:intron | 40.0% |
| !!! | TGTCGTTTTGGTTTCTGCAA+AGG | - | chr1.3:12261201-12261220 | MS.gene91189:intron | 40.0% |
| !!! | TTTTTTCAACAGGAGGTTCG+AGG | - | chr1.3:12262262-12262281 | MS.gene91189:CDS | 40.0% |
| AAAGAGGGAAGAAAGACGCT+TGG | + | chr1.3:12261090-12261109 | None:intergenic | 45.0% | |
| AAAGTCTTTGACTAGTGCCC+CGG | + | chr1.3:12262790-12262809 | None:intergenic | 45.0% | |
| AATGTTGCAGAAGCTGAAGG+CGG | + | chr1.3:12261154-12261173 | None:intergenic | 45.0% | |
| ACAATTGCGGTTGCTTATCG+TGG | - | chr1.3:12260444-12260463 | MS.gene91189:intron | 45.0% | |
| CCAAAAGCTGGAAGAAGTGA+TGG | + | chr1.3:12262374-12262393 | None:intergenic | 45.0% | |
| CCTCACAATTAATCACACCG+CGG | + | chr1.3:12260536-12260555 | None:intergenic | 45.0% | |
| CGATAAGCAACCGCAATTGT+CGG | + | chr1.3:12260444-12260463 | None:intergenic | 45.0% | |
| CGCGGTGTGATTAATTGTGA+GGG | - | chr1.3:12260534-12260553 | MS.gene91189:CDS | 45.0% | |
| CTGTGTTTGTGTCAGGTAGA+GGG | - | chr1.3:12260051-12260070 | MS.gene91189:intron | 45.0% | |
| CTTGTATCCAGAAGGAGAAC+CGG | + | chr1.3:12261375-12261394 | None:intergenic | 45.0% | |
| GAAGATGAGCCATTGTGCAA+CGG | - | chr1.3:12261057-12261076 | MS.gene91189:intron | 45.0% | |
| GCGGAGTATGCAAGACAAAA+TGG | - | chr1.3:12261958-12261977 | MS.gene91189:intron | 45.0% | |
| GCTTAGCACTCAGAAGTAAG+AGG | + | chr1.3:12261437-12261456 | None:intergenic | 45.0% | |
| GTGAAGACCGTATAGTTTGG+AGG | - | chr1.3:12263098-12263117 | MS.gene91189:CDS | 45.0% | |
| GTGTTATAAGGAGTGAGGTG+AGG | - | chr1.3:12260635-12260654 | MS.gene91189:intron | 45.0% | |
| TCGATGAGCACTATGACACA+GGG | - | chr1.3:12262573-12262592 | MS.gene91189:intron | 45.0% | |
| TTACCGCAGACAAAGAGAGA+AGG | + | chr1.3:12261245-12261264 | None:intergenic | 45.0% | |
| ! | AAGCTGGAAGAAGTGATGGA+TGG | + | chr1.3:12262370-12262389 | None:intergenic | 45.0% |
| ! | CCATCACTTCTTCCAGCTTT+TGG | - | chr1.3:12262371-12262390 | MS.gene91189:intron | 45.0% |
| ! | GAAAAATTGCGGCTGTTTCG+TGG | - | chr1.3:12260466-12260485 | MS.gene91189:intron | 45.0% |
| ! | TAGCACTGAAATTGCATCGC+AGG | + | chr1.3:12260414-12260433 | None:intergenic | 45.0% |
| ! | TCACTTCTTCCAGCTTTTGG+AGG | - | chr1.3:12262374-12262393 | MS.gene91189:intron | 45.0% |
| ! | TTCTTCCCTCTTTGTTTCGG+GGG | - | chr1.3:12261097-12261116 | MS.gene91189:intron | 45.0% |
| ! | TTGAATTTCTCTGAGGAGCC+TGG | - | chr1.3:12260704-12260723 | MS.gene91189:intron | 45.0% |
| !! | AGAATGCTTAAAGAGTGCCC+CGG | - | chr1.3:12262897-12262916 | MS.gene91189:CDS | 45.0% |
| !! | ATTCAGGAGGCATCCAAAAG+GGG | - | chr1.3:12260089-12260108 | MS.gene91189:intron | 45.0% |
| !! | CAATTCAGGAGGCATCCAAA+AGG | - | chr1.3:12260087-12260106 | MS.gene91189:intron | 45.0% |
| !! | GGCTGCAAGAGTTCTAAGAA+AGG | - | chr1.3:12262652-12262671 | MS.gene91189:intron | 45.0% |
| !!! | ATATCTAATTTATTTTTTTA+TGG | - | chr1.3:12260211-12260230 | MS.gene91189:intron | 5.0% |
| AAATGTTAACCAGTGCCCCC+GGG | - | chr1.3:12262769-12262788 | MS.gene91189:CDS | 50.0% | |
| AAGCTGGCTGTGTTTGTGTC+AGG | - | chr1.3:12260044-12260063 | MS.gene91189:intron | 50.0% | |
| AAGTCTTTGACTAGTGCCCC+GGG | + | chr1.3:12262789-12262808 | None:intergenic | 50.0% | |
| ACGTTAGGACTCCCAACTGT+GGG | - | chr1.3:12260495-12260514 | MS.gene91189:CDS | 50.0% | |
| ACTCTTGCAGCCAACTCTTC+TGG | + | chr1.3:12262644-12262663 | None:intergenic | 50.0% | |
| AGACTCAAGCAAGGAGCTTG+AGG | - | chr1.3:12259992-12260011 | MS.gene91189:intron | 50.0% | |
| AGGAACTGTGAACCCACAGT+TGG | + | chr1.3:12260510-12260529 | None:intergenic | 50.0% | |
| AGGGACAGTTACTGCTGATG+TGG | - | chr1.3:12260553-12260572 | MS.gene91189:CDS | 50.0% | |
| AGTGAGGTGAGGATGACAGT+GGG | - | chr1.3:12260646-12260665 | MS.gene91189:intron | 50.0% | |
| ATCCCAATCTACTCAGAGCC+AGG | + | chr1.3:12260725-12260744 | None:intergenic | 50.0% | |
| CAGTAATTGCTTCTGGCGCA+AGG | - | chr1.3:12262429-12262448 | MS.gene91189:CDS | 50.0% | |
| CAGTATTCCGGTTCTCCTTC+TGG | - | chr1.3:12261365-12261384 | MS.gene91189:intron | 50.0% | |
| CCGCGGTGTGATTAATTGTG+AGG | - | chr1.3:12260533-12260552 | MS.gene91189:CDS | 50.0% | |
| CTACATGCGACCGACAATTG+CGG | - | chr1.3:12260431-12260450 | MS.gene91189:intron | 50.0% | |
| GAAATGTTAACCAGTGCCCC+CGG | - | chr1.3:12262768-12262787 | MS.gene91189:CDS | 50.0% | |
| GACACGGTTTATTGAGGAGC+TGG | + | chr1.3:12262700-12262719 | None:intergenic | 50.0% | |
| GATAGCAGCATAGAGAGAGC+CGG | + | chr1.3:12261722-12261741 | None:intergenic | 50.0% | |
| GCTGTGTTTGTGTCAGGTAG+AGG | - | chr1.3:12260050-12260069 | MS.gene91189:intron | 50.0% | |
| GGAACTGTGAACCCACAGTT+GGG | + | chr1.3:12260509-12260528 | None:intergenic | 50.0% | |
| GGTTCACAGTTCCTAATCCG+CGG | - | chr1.3:12260516-12260535 | MS.gene91189:CDS | 50.0% | |
| GTCGATGAGCACTATGACAC+AGG | - | chr1.3:12262572-12262591 | MS.gene91189:intron | 50.0% | |
| GTTCCGCTGGTATAAGCTTG+AGG | + | chr1.3:12262313-12262332 | None:intergenic | 50.0% | |
| GTTGGGAGTCCTAACGTATG+CGG | + | chr1.3:12260492-12260511 | None:intergenic | 50.0% | |
| TACGTTAGGACTCCCAACTG+TGG | - | chr1.3:12260494-12260513 | MS.gene91189:CDS | 50.0% | |
| TACTGCTGATGTGGCAGAGT+GGG | - | chr1.3:12260562-12260581 | MS.gene91189:CDS | 50.0% | |
| TCCAAAAGGGGGTCACTTCA+TGG | - | chr1.3:12260101-12260120 | MS.gene91189:intron | 50.0% | |
| TGATGCTGCAGACTCAAGCA+AGG | - | chr1.3:12259983-12260002 | MS.gene91189:intron | 50.0% | |
| TTACTGCTGATGTGGCAGAG+TGG | - | chr1.3:12260561-12260580 | MS.gene91189:CDS | 50.0% | |
| TTCGTCCCCCGAAACAAAGA+GGG | + | chr1.3:12261105-12261124 | None:intergenic | 50.0% | |
| TTGGAGGCAAGGGCTTCTAT+GGG | - | chr1.3:12262390-12262409 | MS.gene91189:intron | 50.0% | |
| TTTGGAGGCAAGGGCTTCTA+TGG | - | chr1.3:12262389-12262408 | MS.gene91189:intron | 50.0% | |
| ! | GGGGACGAAGACAACTTTTC+CGG | - | chr1.3:12261116-12261135 | MS.gene91189:intron | 50.0% |
| ! | TCCATGAAGTGACCCCCTTT+TGG | + | chr1.3:12260105-12260124 | None:intergenic | 50.0% |
| ! | TGAGGTGAAAGCTCTGGTCA+CGG | - | chr1.3:12260010-12260029 | MS.gene91189:intron | 50.0% |
| !! | AATGCTTAAAGAGTGCCCCG+GGG | - | chr1.3:12262899-12262918 | MS.gene91189:CDS | 50.0% |
| !! | AGCCTGGCTCTGAGTAGATT+GGG | - | chr1.3:12260720-12260739 | MS.gene91189:intron | 50.0% |
| !! | CTTCCAGCTTTTGGAGGCAA+GGG | - | chr1.3:12262380-12262399 | MS.gene91189:intron | 50.0% |
| !! | GAATGCTTAAAGAGTGCCCC+GGG | - | chr1.3:12262898-12262917 | MS.gene91189:CDS | 50.0% |
| !! | GCCCCTGTTCTTTGTCGTTT+TGG | - | chr1.3:12261189-12261208 | MS.gene91189:intron | 50.0% |
| !! | TCTTCCAGCTTTTGGAGGCA+AGG | - | chr1.3:12262379-12262398 | MS.gene91189:intron | 50.0% |
| !! | TTCAGGAGGCATCCAAAAGG+GGG | - | chr1.3:12260090-12260109 | MS.gene91189:intron | 50.0% |
| AAGCCCTTGCCTCCAAAAGC+TGG | + | chr1.3:12262386-12262405 | None:intergenic | 55.0% | |
| AATACCAGACTGTGGGGGTG+CGG | - | chr1.3:12261939-12261958 | MS.gene91189:intron | 55.0% | |
| AATGTTAACCAGTGCCCCCG+GGG | - | chr1.3:12262770-12262789 | MS.gene91189:CDS | 55.0% | |
| ACTGCTGATGTGGCAGAGTG+GGG | - | chr1.3:12260563-12260582 | MS.gene91189:CDS | 55.0% | |
| AGTCTTTGACTAGTGCCCCG+GGG | + | chr1.3:12262788-12262807 | None:intergenic | 55.0% | |
| ATGTGGCAGAGTGGGGTAGT+GGG | - | chr1.3:12260570-12260589 | MS.gene91189:CDS | 55.0% | |
| CACGGGGAGAAGGAAAAAGC+TGG | - | chr1.3:12260028-12260047 | MS.gene91189:intron | 55.0% | |
| CTTCGTCCCCCGAAACAAAG+AGG | + | chr1.3:12261106-12261125 | None:intergenic | 55.0% | |
| GAGTGAGGTGAGGATGACAG+TGG | - | chr1.3:12260645-12260664 | MS.gene91189:intron | 55.0% | |
| GGAGCTTGAGGTGAAAGCTC+TGG | - | chr1.3:12260004-12260023 | MS.gene91189:intron | 55.0% | |
| GGTTGTGCACCGTTGCACAA+TGG | + | chr1.3:12261069-12261088 | None:intergenic | 55.0% | |
| GTTTCGTGGCCGCATACGTT+AGG | - | chr1.3:12260480-12260499 | MS.gene91189:CDS | 55.0% | |
| TAAGCTCGGATCAGTTCCGC+TGG | + | chr1.3:12262326-12262345 | None:intergenic | 55.0% | |
| TCGGGCGCAACTCAGTATTC+CGG | - | chr1.3:12261353-12261372 | MS.gene91189:intron | 55.0% | |
| TCTTGTTAACGAGTGCCCCC+GGG | + | chr1.3:12262918-12262937 | None:intergenic | 55.0% | |
| TGTAGCTGTGGCCTGTTGGT+GGG | - | chr1.3:12260596-12260615 | MS.gene91189:CDS | 55.0% | |
| ! | AGGTGAAAGCTCTGGTCACG+GGG | - | chr1.3:12260012-12260031 | MS.gene91189:intron | 55.0% |
| ! | GAGGTGAAAGCTCTGGTCAC+GGG | - | chr1.3:12260011-12260030 | MS.gene91189:intron | 55.0% |
| ! | GTCTTGTTAACGAGTGCCCC+CGG | + | chr1.3:12262919-12262938 | None:intergenic | 55.0% |
| !! | ATGCTTAAAGAGTGCCCCGG+GGG | - | chr1.3:12262900-12262919 | MS.gene91189:CDS | 55.0% |
| !! | GAGCCTGGCTCTGAGTAGAT+TGG | - | chr1.3:12260719-12260738 | MS.gene91189:intron | 55.0% |
| CAGGGACAACACGCTGAGCA+AGG | + | chr1.3:12262604-12262623 | None:intergenic | 60.0% | |
| CTTGTTAACGAGTGCCCCCG+GGG | + | chr1.3:12262917-12262936 | None:intergenic | 60.0% | |
| GATGTGGCAGAGTGGGGTAG+TGG | - | chr1.3:12260569-12260588 | MS.gene91189:CDS | 60.0% | |
| GCTGTGATCGCGCTCCATAG+TGG | - | chr1.3:12260357-12260376 | MS.gene91189:CDS | 60.0% | |
| GGTGTGTAGCTGTGGCCTGT+TGG | - | chr1.3:12260592-12260611 | MS.gene91189:CDS | 60.0% | |
| GTCTTTGACTAGTGCCCCGG+GGG | + | chr1.3:12262787-12262806 | None:intergenic | 60.0% | |
| GTGTAGCTGTGGCCTGTTGG+TGG | - | chr1.3:12260595-12260614 | MS.gene91189:CDS | 60.0% | |
| TGTGGCAGAGTGGGGTAGTG+GGG | - | chr1.3:12260571-12260590 | MS.gene91189:CDS | 60.0% | |
| ! | AAGCTCTGGTCACGGGGAGA+AGG | - | chr1.3:12260018-12260037 | MS.gene91189:intron | 60.0% |
| !! | GGTAGTGGGGTGTGTAGCTG+TGG | - | chr1.3:12260584-12260603 | MS.gene91189:CDS | 60.0% |
| AAGGCGGCTGTTGCTGTCGC+CGG | + | chr1.3:12261138-12261157 | None:intergenic | 65.0% | |
| TACTCCGCACCCCCACAGTC+TGG | + | chr1.3:12261946-12261965 | None:intergenic | 65.0% | |
| ! | GACTAGTGCCCCGGGGGCAC+TGG | + | chr1.3:12262781-12262800 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 12259750 | 12263174 | 12259750 | ID=MS.gene91189 |
| chr1.3 | mRNA | 12259750 | 12263174 | 12259750 | ID=MS.gene91189.t1;Parent=MS.gene91189 |
| chr1.3 | exon | 12262717 | 12263174 | 12262717 | ID=MS.gene91189.t1.exon1;Parent=MS.gene91189.t1 |
| chr1.3 | CDS | 12262717 | 12263174 | 12262717 | ID=cds.MS.gene91189.t1;Parent=MS.gene91189.t1 |
| chr1.3 | exon | 12262412 | 12262547 | 12262412 | ID=MS.gene91189.t1.exon2;Parent=MS.gene91189.t1 |
| chr1.3 | CDS | 12262412 | 12262547 | 12262412 | ID=cds.MS.gene91189.t1;Parent=MS.gene91189.t1 |
| chr1.3 | exon | 12262257 | 12262323 | 12262257 | ID=MS.gene91189.t1.exon3;Parent=MS.gene91189.t1 |
| chr1.3 | CDS | 12262257 | 12262323 | 12262257 | ID=cds.MS.gene91189.t1;Parent=MS.gene91189.t1 |
| chr1.3 | exon | 12262005 | 12262081 | 12262005 | ID=MS.gene91189.t1.exon4;Parent=MS.gene91189.t1 |
| chr1.3 | CDS | 12262005 | 12262081 | 12262005 | ID=cds.MS.gene91189.t1;Parent=MS.gene91189.t1 |
| chr1.3 | exon | 12261702 | 12261870 | 12261702 | ID=MS.gene91189.t1.exon5;Parent=MS.gene91189.t1 |
| chr1.3 | CDS | 12261702 | 12261870 | 12261702 | ID=cds.MS.gene91189.t1;Parent=MS.gene91189.t1 |
| chr1.3 | exon | 12260866 | 12260977 | 12260866 | ID=MS.gene91189.t1.exon6;Parent=MS.gene91189.t1 |
| chr1.3 | CDS | 12260866 | 12260977 | 12260866 | ID=cds.MS.gene91189.t1;Parent=MS.gene91189.t1 |
| chr1.3 | exon | 12260474 | 12260650 | 12260474 | ID=MS.gene91189.t1.exon7;Parent=MS.gene91189.t1 |
| chr1.3 | CDS | 12260474 | 12260650 | 12260474 | ID=cds.MS.gene91189.t1;Parent=MS.gene91189.t1 |
| chr1.3 | exon | 12260251 | 12260377 | 12260251 | ID=MS.gene91189.t1.exon8;Parent=MS.gene91189.t1 |
| chr1.3 | CDS | 12260251 | 12260377 | 12260251 | ID=cds.MS.gene91189.t1;Parent=MS.gene91189.t1 |
| chr1.3 | exon | 12259750 | 12259863 | 12259750 | ID=MS.gene91189.t1.exon9;Parent=MS.gene91189.t1 |
| chr1.3 | CDS | 12259750 | 12259863 | 12259750 | ID=cds.MS.gene91189.t1;Parent=MS.gene91189.t1 |
| Gene Sequence |
| Protein sequence |
