AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91292

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91292.t1 MTR_1g008290 34.921 126 79 1 103 228 22 144 3.11e-22 94.0
MS.gene91292.t1 MTR_4g035820 26.121 379 236 12 29 387 70 424 1.35e-19 93.6
MS.gene91292.t1 MTR_6g051425 25.926 216 143 5 37 240 20 230 2.06e-17 84.7
MS.gene91292.t1 MTR_3g006370 37.383 107 60 2 33 134 49 153 2.55e-16 79.3
MS.gene91292.t1 MTR_4g067290 29.630 135 91 2 3 136 28 159 8.84e-15 74.7
MS.gene91292.t1 MTR_4g067290 29.630 135 91 2 3 136 28 159 9.07e-15 74.7
MS.gene91292.t1 MTR_4g067290 29.630 135 91 2 3 136 48 179 1.40e-14 74.7
MS.gene91292.t1 MTR_4g067290 29.630 135 91 2 3 136 46 177 1.45e-14 74.7
MS.gene91292.t1 MTR_4g067290 29.630 135 91 2 3 136 48 179 1.47e-14 74.7
MS.gene91292.t1 MTR_4g067290 29.630 135 91 2 3 136 88 219 1.83e-14 75.1
MS.gene91292.t1 MTR_1g070355 28.910 211 135 7 39 240 79 283 5.74e-13 72.4
MS.gene91292.t1 MTR_6g022070 31.111 135 90 3 244 376 34 167 2.88e-12 68.9
MS.gene91292.t1 MTR_2g098880 31.250 112 72 2 28 134 54 165 6.51e-12 66.6
MS.gene91292.t1 MTR_2g098880 31.250 112 72 2 28 134 66 177 7.49e-12 66.6
MS.gene91292.t1 MTR_8g465780 29.231 130 87 3 283 408 1 129 5.66e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91292.t1 AT4G15090 58.028 436 156 3 241 653 381 812 1.57e-176 524
MS.gene91292.t1 AT4G15090 76.577 222 49 2 22 240 39 260 2.56e-108 347
MS.gene91292.t1 AT4G15090 58.028 436 156 3 241 653 381 812 1.57e-176 524
MS.gene91292.t1 AT4G15090 76.577 222 49 2 22 240 39 260 2.56e-108 347
MS.gene91292.t1 AT4G15090 58.028 436 156 3 241 653 381 812 1.57e-176 524
MS.gene91292.t1 AT4G15090 76.577 222 49 2 22 240 39 260 2.56e-108 347
MS.gene91292.t1 AT4G15090 58.028 436 156 3 241 653 381 812 1.57e-176 524
MS.gene91292.t1 AT4G15090 76.577 222 49 2 22 240 39 260 2.56e-108 347
MS.gene91292.t1 AT4G15090 58.028 436 156 3 241 653 381 812 1.57e-176 524
MS.gene91292.t1 AT4G15090 76.577 222 49 2 22 240 39 260 2.56e-108 347
MS.gene91292.t1 AT3G22170 48.673 452 204 5 241 666 390 839 7.27e-135 416
MS.gene91292.t1 AT3G22170 43.777 233 93 3 23 240 60 269 2.55e-57 208
MS.gene91292.t1 AT3G22170 48.673 452 204 5 241 666 390 839 7.27e-135 416
MS.gene91292.t1 AT3G22170 43.777 233 93 3 23 240 60 269 2.55e-57 208
MS.gene91292.t1 AT1G76320 44.479 317 170 2 240 552 317 631 1.95e-94 306
MS.gene91292.t1 AT1G76320 44.335 203 107 2 38 240 1 197 1.19e-50 187
MS.gene91292.t1 AT1G76320 44.340 318 171 2 239 552 316 631 3.13e-94 307
MS.gene91292.t1 AT1G76320 44.335 203 107 2 38 240 1 197 1.98e-50 187
MS.gene91292.t1 AT1G76320 44.340 318 171 2 239 552 316 631 3.42e-94 307
MS.gene91292.t1 AT1G76320 44.335 203 107 2 38 240 1 197 2.04e-50 187
MS.gene91292.t1 AT1G76320 44.340 318 171 2 239 552 316 631 3.42e-94 307
MS.gene91292.t1 AT1G76320 44.335 203 107 2 38 240 1 197 2.04e-50 187
MS.gene91292.t1 AT4G19990 44.501 391 198 5 242 613 273 663 5.11e-86 284
MS.gene91292.t1 AT4G19990 33.696 184 72 2 72 240 2 150 2.85e-22 102
MS.gene91292.t1 AT4G19990 44.501 391 198 5 242 613 330 720 8.05e-86 285
MS.gene91292.t1 AT4G19990 38.938 226 86 4 31 240 18 207 1.85e-36 146
MS.gene91292.t1 AT4G19990 44.501 391 198 5 242 613 330 720 8.22e-86 285
MS.gene91292.t1 AT4G19990 38.938 226 86 4 31 240 18 207 1.82e-36 146
MS.gene91292.t1 AT4G19990 44.501 391 198 5 242 613 330 720 8.22e-86 285
MS.gene91292.t1 AT4G19990 38.938 226 86 4 31 240 18 207 1.82e-36 146
MS.gene91292.t1 AT4G19990 44.501 391 198 5 242 613 330 720 1.10e-85 285
MS.gene91292.t1 AT4G19990 38.938 226 86 4 31 240 18 207 2.90e-36 146
MS.gene91292.t1 AT4G19990 44.501 391 198 5 242 613 330 720 1.10e-85 285
MS.gene91292.t1 AT4G19990 38.938 226 86 4 31 240 18 207 2.90e-36 146
MS.gene91292.t1 AT4G19990 44.501 391 198 5 242 613 344 734 1.44e-85 285
MS.gene91292.t1 AT4G19990 38.938 226 86 4 31 240 32 221 2.31e-36 146
MS.gene91292.t1 AT2G32250 36.930 417 235 5 243 635 286 698 7.77e-78 264
MS.gene91292.t1 AT2G32250 36.946 203 88 3 38 240 1 163 1.04e-27 119
MS.gene91292.t1 AT2G32250 36.930 417 235 5 243 635 286 698 9.30e-78 264
MS.gene91292.t1 AT2G32250 36.946 203 88 3 38 240 1 163 1.03e-27 119
MS.gene91292.t1 AT2G32250 37.019 416 234 5 244 635 328 739 1.06e-77 263
MS.gene91292.t1 AT2G32250 37.561 205 88 3 36 240 40 204 2.41e-29 124
MS.gene91292.t1 AT2G32250 37.019 416 234 5 244 635 328 739 1.48e-77 264
MS.gene91292.t1 AT2G32250 37.500 208 90 3 33 240 37 204 2.78e-29 124
MS.gene91292.t1 AT2G32250 37.019 416 234 5 244 635 328 739 1.48e-77 264
MS.gene91292.t1 AT2G32250 37.500 208 90 3 33 240 37 204 2.78e-29 124
MS.gene91292.t1 AT2G32250 37.019 416 234 5 244 635 328 739 1.48e-77 264
MS.gene91292.t1 AT2G32250 37.500 208 90 3 33 240 37 204 2.78e-29 124
MS.gene91292.t1 AT2G32250 37.019 416 234 5 244 635 328 739 1.51e-77 264
MS.gene91292.t1 AT2G32250 37.500 208 90 3 33 240 37 204 2.75e-29 124
MS.gene91292.t1 AT2G32250 37.019 416 234 5 244 635 328 739 1.51e-77 264
MS.gene91292.t1 AT2G32250 37.500 208 90 3 33 240 37 204 2.75e-29 124
MS.gene91292.t1 AT4G38180 34.539 304 192 3 232 528 395 698 1.32e-54 200
MS.gene91292.t1 AT4G38180 34.259 216 135 3 31 240 70 284 1.35e-30 128
MS.gene91292.t1 AT2G27110 33.677 291 184 4 241 526 207 493 3.18e-48 181
MS.gene91292.t1 AT2G27110 33.677 291 184 4 241 526 352 638 7.22e-48 181
MS.gene91292.t1 AT2G27110 27.751 209 125 5 33 240 48 231 3.27e-17 86.7
MS.gene91292.t1 AT2G27110 33.677 291 184 4 241 526 352 638 7.22e-48 181
MS.gene91292.t1 AT2G27110 27.751 209 125 5 33 240 48 231 3.27e-17 86.7
MS.gene91292.t1 AT1G52520 34.754 305 177 6 233 520 393 692 1.76e-47 179
MS.gene91292.t1 AT1G52520 31.308 214 132 6 34 244 85 286 8.06e-22 100
MS.gene91292.t1 AT4G38170 30.211 331 208 5 232 548 160 481 4.54e-46 172
MS.gene91292.t1 AT1G80010 31.884 276 173 8 259 524 444 714 1.27e-37 150
MS.gene91292.t1 AT1G80010 29.767 215 140 4 34 240 95 306 1.91e-19 93.6
MS.gene91292.t1 AT5G18960 31.276 243 163 2 229 470 490 729 4.07e-34 139
MS.gene91292.t1 AT5G18960 31.276 243 163 2 229 470 490 729 4.07e-34 139
MS.gene91292.t1 AT3G06250 31.174 247 164 3 225 470 464 705 4.93e-34 139
MS.gene91292.t1 AT3G06250 33.929 112 63 1 22 133 16 116 6.48e-11 66.2
MS.gene91292.t1 AT3G06250 31.174 247 164 3 225 470 464 705 4.93e-34 139
MS.gene91292.t1 AT3G06250 33.929 112 63 1 22 133 16 116 6.48e-11 66.2
MS.gene91292.t1 AT3G06250 31.174 247 164 3 225 470 464 705 4.93e-34 139
MS.gene91292.t1 AT3G06250 33.929 112 63 1 22 133 16 116 6.48e-11 66.2
MS.gene91292.t1 AT1G10240 30.131 229 151 3 259 482 401 625 3.24e-26 114
MS.gene91292.t1 AT1G10240 27.928 222 138 8 34 240 48 262 1.03e-11 68.6
MS.gene91292.t1 AT1G10240 30.131 229 151 3 259 482 401 625 3.24e-26 114
MS.gene91292.t1 AT1G10240 27.928 222 138 8 34 240 48 262 1.03e-11 68.6
MS.gene91292.t1 AT5G28530 30.594 219 125 7 259 468 353 553 8.57e-19 91.3
MS.gene91292.t1 AT5G28530 29.224 219 132 6 259 468 353 557 1.25e-18 90.5
MS.gene91292.t1 AT5G28530 29.536 237 139 8 241 468 399 616 1.27e-18 90.9
MS.gene91292.t1 AT5G28530 29.536 237 139 8 241 468 399 616 1.27e-18 90.9
MS.gene91292.t1 AT5G28530 28.270 237 146 7 241 468 399 620 1.95e-18 90.1
MS.gene91292.t1 AT2G43280 36.975 119 66 3 29 140 17 133 5.73e-16 77.8
MS.gene91292.t1 AT4G12850 39.604 101 60 1 33 133 10 109 4.52e-15 73.2
MS.gene91292.t1 AT4G12850 39.604 101 60 1 33 133 10 109 6.42e-15 72.8
MS.gene91292.t1 AT3G59470 34.286 105 68 1 33 136 69 173 1.20e-14 74.7
MS.gene91292.t1 AT3G59470 34.286 105 68 1 33 136 69 173 1.20e-14 74.7
MS.gene91292.t1 AT3G59470 34.286 105 68 1 33 136 81 185 1.26e-14 75.1
MS.gene91292.t1 AT4G12850 39.604 101 60 1 33 133 10 109 2.26e-14 72.4
MS.gene91292.t1 AT3G07500 30.323 155 98 2 27 179 26 172 3.28e-14 72.8
MS.gene91292.t1 AT2G43280 35.354 99 55 3 49 140 2 98 3.68e-11 62.8

Find 129 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTACAGGTTCCCTAATTT+TGG 0.141551 1.3:+73136659 None:intergenic
ACTGTTTCACAAACTCTTTA+AGG 0.204134 1.3:+73137087 None:intergenic
AACGTTTAAGAAATATATTT+TGG 0.206444 1.3:-73137724 MS.gene91292:CDS
TCGGATGCAATTGCCCTTAA+TGG 0.236596 1.3:-73136025 MS.gene91292:CDS
ATTGCCCTTAATGGATATTA+TGG 0.237741 1.3:-73136016 MS.gene91292:CDS
GTACCTAGAGCACGCGAATT+TGG 0.243704 1.3:+73138189 None:intergenic
GGACCAAAGATGCCAAAATT+AGG 0.253094 1.3:-73136671 MS.gene91292:CDS
TTTGGCATCAATAAATTCTT+TGG 0.254194 1.3:+73138207 None:intergenic
CATTTCAACATACATCTTTC+GGG 0.258771 1.3:+73137928 None:intergenic
TGTCGATTGTTCGAATATAA+AGG 0.270665 1.3:-73136774 MS.gene91292:CDS
GAGTACCATAATATCCATTA+AGG 0.276199 1.3:+73136011 None:intergenic
TCAAGAGTATGCCAAATCTA+TGG 0.278613 1.3:-73138272 MS.gene91292:CDS
ACATTTCAACATACATCTTT+CGG 0.295052 1.3:+73137927 None:intergenic
AAGAAAGCTATGCCCCTCTT+AGG 0.295788 1.3:+73138367 None:intergenic
CTGTTTCACAAACTCTTTAA+GGG 0.296391 1.3:+73137088 None:intergenic
GCATGTACAGTTGAACTTAA+TGG 0.318417 1.3:-73135875 MS.gene91292:CDS
TATCGTCCGACAACCACTTT+TGG 0.332110 1.3:-73135482 MS.gene91292:CDS
AAAATGCAATTCTTAAACTT+TGG 0.338533 1.3:+73137326 None:intergenic
AAAATGTTCCATTTCCCATC+TGG 0.352283 1.3:+73138076 None:intergenic
AACGACAATGGTGCAGAAAC+TGG 0.362647 1.3:-73136474 MS.gene91292:CDS
GTTTGACAGAGGGCAGTATC+TGG 0.368111 1.3:-73137846 MS.gene91292:CDS
ATAGGTTAATTCTTCTGAAT+AGG 0.384277 1.3:-73137064 MS.gene91292:CDS
GTTGTGTTCCTCTTCTTACT+TGG 0.388273 1.3:+73136393 None:intergenic
AGAAAGCTATGCCCCTCTTA+GGG 0.402896 1.3:+73138368 None:intergenic
ATCTATAGAATAGAAGAAGT+TGG 0.403398 1.3:+73137760 None:intergenic
CTTTGTGTCCTATCTGCTAC+AGG 0.407215 1.3:+73136645 None:intergenic
AAGAGTTTGTGAAACAGTAT+AGG 0.409635 1.3:-73137082 MS.gene91292:CDS
AGTGGTGAATCCCATAGATT+TGG 0.415385 1.3:+73138261 None:intergenic
CAGAGGGCAGTATCTGGCTT+TGG 0.416018 1.3:-73137840 MS.gene91292:CDS
CACTGGTTGCTTCCCCTAAG+AGG 0.417880 1.3:-73138381 MS.gene91292:CDS
GACCAAAGATGCCAAAATTA+GGG 0.426826 1.3:-73136670 MS.gene91292:CDS
TTGAACTCCATGATGATGTT+TGG 0.435488 1.3:-73137247 MS.gene91292:CDS
AAATGTTCCATTTCCCATCT+GGG 0.441346 1.3:+73138077 None:intergenic
TTGCTGTGAAAGTGTGGATC+AGG 0.445132 1.3:+73135322 None:intergenic
TCAAAACATTGGGTCAATCA+TGG 0.447302 1.3:-73137885 MS.gene91292:CDS
GTTGAAGTGTTGGGTGTAGC+TGG 0.449517 1.3:-73136918 MS.gene91292:CDS
GTTCATGTAGGGAGGGCAAT+TGG 0.449744 1.3:-73135507 MS.gene91292:intron
TCTATAGAATAGAAGAAGTT+GGG 0.462776 1.3:+73137761 None:intergenic
GGGAGATGGGCAAGTTATGC+TGG 0.466240 1.3:-73137813 MS.gene91292:CDS
GCAGTATCTGGCTTTGGATG+AGG 0.466634 1.3:-73137834 MS.gene91292:CDS
TCAAGATACCCTGCAGCAAA+TGG 0.469548 1.3:-73136223 MS.gene91292:intron
ACTTAAATCTCCTTCACCTT+GGG 0.470138 1.3:-73136991 MS.gene91292:CDS
GTTGAAATGTCTAGACAATC+TGG 0.471543 1.3:-73137914 MS.gene91292:CDS
GAAATTCCAAGTTGAAGTGT+TGG 0.475026 1.3:-73136928 MS.gene91292:CDS
AGCAACATTATAACTCTCTT+CGG 0.478706 1.3:+73136548 None:intergenic
ATGCCAAATTCGCGTGCTCT+AGG 0.479668 1.3:-73138192 MS.gene91292:CDS
AGGGGCATAGCTTTCTTTGA+AGG 0.480618 1.3:-73138361 MS.gene91292:CDS
ACTGGTTGCTTCCCCTAAGA+GGG 0.487153 1.3:-73138380 MS.gene91292:CDS
AAATTCCAAGTTGAAGTGTT+GGG 0.488182 1.3:-73136927 MS.gene91292:CDS
CTGGTGGCTGTCAAAACATT+GGG 0.488703 1.3:-73137895 MS.gene91292:CDS
GTATTTCAAGCATATTCAAA+AGG 0.489011 1.3:-73137789 MS.gene91292:CDS
GTCAAACTGTTCATCTGTCC+AGG 0.491245 1.3:+73137298 None:intergenic
GTGTAGCTGGATGTCAATCT+AGG 0.493252 1.3:-73136905 MS.gene91292:CDS
TTCACTCATTGTACGAAGAC+CGG 0.494147 1.3:-73137223 MS.gene91292:CDS
CTGGCTTTGGATGAGGGAGA+TGG 0.494760 1.3:-73137827 MS.gene91292:CDS
GTTTCAAATTCAATGCCGTT+AGG 0.501314 1.3:+73138319 None:intergenic
CACTTAAATCTCCTTCACCT+TGG 0.501635 1.3:-73136992 MS.gene91292:CDS
CGAAAATGATATGCCAAAGC+TGG 0.503037 1.3:+73138019 None:intergenic
AGTACCATAATATCCATTAA+GGG 0.503128 1.3:+73136012 None:intergenic
AGTATTGCGTTGAGTGAAGA+AGG 0.512046 1.3:-73136579 MS.gene91292:CDS
GGTGAAGGAGATTTAAGTGC+AGG 0.515427 1.3:+73136996 None:intergenic
GCATCACACGGGTGGTGCAC+TGG 0.518829 1.3:-73138398 MS.gene91292:CDS
CAGTATCTGGCTTTGGATGA+GGG 0.524524 1.3:-73137833 MS.gene91292:CDS
CAAGAGTATGCCAAATCTAT+GGG 0.524696 1.3:-73138271 MS.gene91292:CDS
CAAAACATTGGGTCAATCAT+GGG 0.529150 1.3:-73137884 MS.gene91292:CDS
GGGGCATAGCTTTCTTTGAA+GGG 0.530599 1.3:-73138360 MS.gene91292:CDS
TCTTGAGCGTCGACAAGTAC+AGG 0.531111 1.3:+73136240 None:intergenic
TCAACACAGCATGCAAGGCC+TGG 0.531717 1.3:-73135824 MS.gene91292:intron
CACTTGAACAACCGCAACGT+TGG 0.534327 1.3:+73136721 None:intergenic
TGGCTTTGGATGAGGGAGAT+GGG 0.535356 1.3:-73137826 MS.gene91292:CDS
AGCTTTCTTTGAAGGGGACA+CGG 0.537323 1.3:-73138353 MS.gene91292:CDS
AAACACAAACCATTTGCTGC+AGG 0.538027 1.3:+73136214 None:intergenic
CTGAAGGCTATATCCAAAAG+TGG 0.546535 1.3:+73135469 None:intergenic
CTACACCCAACACTTCAACT+TGG 0.546709 1.3:+73136922 None:intergenic
TTAGGGAACCTGTAGCAGAT+AGG 0.546715 1.3:-73136653 MS.gene91292:CDS
TCTGGTGGCTGTCAAAACAT+TGG 0.549465 1.3:-73137896 MS.gene91292:CDS
CTCATTATATCATGAAGAGA+TGG 0.550080 1.3:-73136692 MS.gene91292:CDS
AGTGAAACCAAACATCATCA+TGG 0.555179 1.3:+73137240 None:intergenic
CACTCAATGCATGTCTGCAA+AGG 0.555274 1.3:+73136748 None:intergenic
CTATATCCAAAAGTGGTTGT+CGG 0.558538 1.3:+73135476 None:intergenic
TGTCAATCTAGGACAGAGGT+TGG 0.561454 1.3:-73136894 MS.gene91292:CDS
GAACACAACTAGGAAAAGAA+AGG 0.562569 1.3:-73136379 MS.gene91292:intron
TCAGCAGAATGTGCAAGGAC+TGG 0.567200 1.3:-73135990 MS.gene91292:intron
GTTAATCAACACAGCATGCA+AGG 0.568293 1.3:-73135829 MS.gene91292:CDS
GTAAGAAGAGGAACACAACT+AGG 0.569051 1.3:-73136389 MS.gene91292:CDS
CTTCAAAACCAAGTAAGAAG+AGG 0.570332 1.3:-73136401 MS.gene91292:CDS
TTTCAAGCATATTCAAAAGG+AGG 0.574379 1.3:-73137786 MS.gene91292:CDS
CTCTTCATGATATAATGAGA+TGG 0.574857 1.3:+73136696 None:intergenic
GTAAATAACTCTAACGACAA+TGG 0.578738 1.3:-73136486 MS.gene91292:CDS
GGGCATAGCTTTCTTTGAAG+GGG 0.579841 1.3:-73138359 MS.gene91292:CDS
GGACACAAAGGATACAAACT+AGG 0.580462 1.3:-73136632 MS.gene91292:CDS
GAACTGTTGCTGTGAAAGTG+TGG 0.585833 1.3:+73135316 None:intergenic
GGTGCAGAAACTGGCAACAA+TGG 0.585898 1.3:-73136465 MS.gene91292:CDS
TCAAATTCAATGCCGTTAGG+TGG 0.590422 1.3:+73138322 None:intergenic
CACACATCATTATAACGTTG+AGG 0.592933 1.3:+73136609 None:intergenic
TCTAGGACAGAGGTTGGAGA+TGG 0.594905 1.3:-73136888 MS.gene91292:CDS
AAAGTGGGTACCGACGTACA+TGG 0.600111 1.3:-73137198 MS.gene91292:CDS
AACACAAACCATTTGCTGCA+GGG 0.603531 1.3:+73136215 None:intergenic
GAAAGCTATGCCCCTCTTAG+GGG 0.607330 1.3:+73138369 None:intergenic
GGTACTCAGCAGAATGTGCA+AGG 0.609447 1.3:-73135995 MS.gene91292:CDS
CGAGTTATCAGTTTGACAGA+GGG 0.612110 1.3:-73137856 MS.gene91292:CDS
AAGTGGGTACCGACGTACAT+GGG 0.612237 1.3:-73137197 MS.gene91292:CDS
TTAATGGAGCCACCTCATGA+TGG 0.620785 1.3:-73135859 MS.gene91292:CDS
AACAGTTTGACATGAGATGG+TGG 0.621739 1.3:-73137286 MS.gene91292:CDS
AAATTCGCGTGCTCTAGGTA+CGG 0.623519 1.3:-73138187 MS.gene91292:CDS
CTGGTTGCTTCCCCTAAGAG+GGG 0.625137 1.3:-73138379 MS.gene91292:CDS
ACTGTCGGAACGTTGAGGTG+TGG 0.629360 1.3:+73137151 None:intergenic
CTGCTCCTACCATCAGACTC+AGG 0.632022 1.3:+73138157 None:intergenic
AAAGAAAGAGTTCACACTGT+CGG 0.634665 1.3:+73137136 None:intergenic
TCTTCTGAATAGGTATGATG+AGG 0.638772 1.3:-73137054 MS.gene91292:CDS
TTGAGTGTTCTCCAACGTTG+CGG 0.639483 1.3:-73136732 MS.gene91292:CDS
GTCAATGAAGAGCATCACAC+GGG 0.641639 1.3:-73138409 MS.gene91292:CDS
GGAGTAACACCTGAGTCTGA+TGG 0.648882 1.3:-73138166 MS.gene91292:CDS
ATGAACAGTTTGACATGAGA+TGG 0.648940 1.3:-73137289 MS.gene91292:CDS
TGGATGTCAATCTAGGACAG+AGG 0.649330 1.3:-73136898 MS.gene91292:CDS
TATAGTTCAAGATTACGAGA+AGG 0.655112 1.3:-73136850 MS.gene91292:CDS
TTCACACTGTCGGAACGTTG+AGG 0.659741 1.3:+73137146 None:intergenic
CTATTCTATAGATTTAAACG+AGG 0.660746 1.3:-73137750 MS.gene91292:CDS
ACATAGTAACCATCATGAGG+TGG 0.662349 1.3:+73135850 None:intergenic
ACGAGTTATCAGTTTGACAG+AGG 0.665307 1.3:-73137857 MS.gene91292:CDS
TGTCAATGAAGAGCATCACA+CGG 0.667976 1.3:-73138410 MS.gene91292:CDS
AATGAAGAGCATCACACGGG+TGG 0.670295 1.3:-73138406 MS.gene91292:CDS
TAACACCTGAGTCTGATGGT+AGG 0.675623 1.3:-73138162 MS.gene91292:CDS
CTGTAGCAGATAGGACACAA+AGG 0.688770 1.3:-73136644 MS.gene91292:CDS
TTAACATAGTAACCATCATG+AGG 0.693243 1.3:+73135847 None:intergenic
TTGGAACGAGTTGAGCTCAG+AGG 0.703393 1.3:-73136808 MS.gene91292:CDS
ACAGTTTGACATGAGATGGT+GGG 0.706939 1.3:-73137285 MS.gene91292:CDS
AAGACATCTCCCATGTACGT+CGG 0.734961 1.3:+73137188 None:intergenic
GAAATGTCTAGACAATCTGG+TGG 0.763154 1.3:-73137911 MS.gene91292:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTATTAATTATAA+AGG - chr1.3:73137971-73137990 MS.gene91292:CDS 0.0%
!!! AACGTTTAAGAAATATATTT+TGG - chr1.3:73136000-73136019 MS.gene91292:CDS 15.0%
!!! ACGTTTAAGAAATATATTTT+GGG - chr1.3:73136001-73136020 MS.gene91292:CDS 15.0%
!!! GAACATTTTTGAATTTATAA+AGG - chr1.3:73135662-73135681 MS.gene91292:intron 15.0%
!! AAAATGCAATTCTTAAACTT+TGG + chr1.3:73136401-73136420 None:intergenic 20.0%
!! AGAAGATTATATTCATGATT+AGG + chr1.3:73137934-73137953 None:intergenic 20.0%
!! CTAATAAGTAACTAAGTATA+TGG + chr1.3:73138299-73138318 None:intergenic 20.0%
!! TAATTTCCCAATAATTTCAT+AGG + chr1.3:73138148-73138167 None:intergenic 20.0%
!! TACTTTCCTATGAAATTATT+GGG - chr1.3:73138139-73138158 MS.gene91292:CDS 20.0%
!!! TGCTTAATAGATTGTAATTT+TGG - chr1.3:73137818-73137837 MS.gene91292:CDS 20.0%
! ACATTTCAACATACATCTTT+CGG + chr1.3:73135800-73135819 None:intergenic 25.0%
! AGAACATTGTAATCATTTGA+TGG + chr1.3:73137776-73137795 None:intergenic 25.0%
! AGTACCATAATATCCATTAA+GGG + chr1.3:73137715-73137734 None:intergenic 25.0%
! ATAGGTTAATTCTTCTGAAT+AGG - chr1.3:73136660-73136679 MS.gene91292:CDS 25.0%
! ATCTATAGAATAGAAGAAGT+TGG + chr1.3:73135967-73135986 None:intergenic 25.0%
! CTATTCTATAGATTTAAACG+AGG - chr1.3:73135974-73135993 MS.gene91292:intron 25.0%
! GTACTTTCCTATGAAATTAT+TGG - chr1.3:73138138-73138157 MS.gene91292:CDS 25.0%
! GTATTTCAAGCATATTCAAA+AGG - chr1.3:73135935-73135954 MS.gene91292:intron 25.0%
! TACTTATTAGCATTTGAACT+TGG - chr1.3:73138309-73138328 MS.gene91292:CDS 25.0%
! TCTATAGAATAGAAGAAGTT+GGG + chr1.3:73135966-73135985 None:intergenic 25.0%
! TTTGGCATCAATAAATTCTT+TGG + chr1.3:73135520-73135539 None:intergenic 25.0%
!! TGAATAGAATAATTTGTGCT+TGG - chr1.3:73138337-73138356 MS.gene91292:CDS 25.0%
!! TTTCTAGCATTTAAAAGATC+AGG - chr1.3:73137417-73137436 MS.gene91292:intron 25.0%
AAGAGTTTGTGAAACAGTAT+AGG - chr1.3:73136642-73136661 MS.gene91292:CDS 30.0%
ACTGTTTCACAAACTCTTTA+AGG + chr1.3:73136640-73136659 None:intergenic 30.0%
AGCAACATTATAACTCTCTT+CGG + chr1.3:73137179-73137198 None:intergenic 30.0%
ATTGATATTCATATCGCTGT+AGG - chr1.3:73138042-73138061 MS.gene91292:CDS 30.0%
CAGATCATGAATGAAAAAAG+AGG + chr1.3:73137536-73137555 None:intergenic 30.0%
CATTTCAACATACATCTTTC+GGG + chr1.3:73135799-73135818 None:intergenic 30.0%
CTCATTATATCATGAAGAGA+TGG - chr1.3:73137032-73137051 MS.gene91292:CDS 30.0%
CTCTTCATGATATAATGAGA+TGG + chr1.3:73137031-73137050 None:intergenic 30.0%
CTGTTTCACAAACTCTTTAA+GGG + chr1.3:73136639-73136658 None:intergenic 30.0%
GAGTACCATAATATCCATTA+AGG + chr1.3:73137716-73137735 None:intergenic 30.0%
GTAAATAACTCTAACGACAA+TGG - chr1.3:73137238-73137257 MS.gene91292:CDS 30.0%
TATAGTTCAAGATTACGAGA+AGG - chr1.3:73136874-73136893 MS.gene91292:CDS 30.0%
TGATACGAGAATCACTTTAT+AGG - chr1.3:73137444-73137463 MS.gene91292:intron 30.0%
TGATCAGTGACTATAACTTT+GGG + chr1.3:73136248-73136267 None:intergenic 30.0%
TTAACATAGTAACCATCATG+AGG + chr1.3:73137880-73137899 None:intergenic 30.0%
TTGATATTCATATCGCTGTA+GGG - chr1.3:73138043-73138062 MS.gene91292:CDS 30.0%
TTGATCAGTGACTATAACTT+TGG + chr1.3:73136249-73136268 None:intergenic 30.0%
TTGCACATAACCTTAATTGT+AGG - chr1.3:73138374-73138393 MS.gene91292:CDS 30.0%
TTTCAAGCATATTCAAAAGG+AGG - chr1.3:73135938-73135957 MS.gene91292:intron 30.0%
! AAATTCCAAGTTGAAGTGTT+GGG - chr1.3:73136797-73136816 MS.gene91292:CDS 30.0%
! ATCACAAAAGACAGATTTTC+AGG + chr1.3:73136356-73136375 None:intergenic 30.0%
! ATTGCCCTTAATGGATATTA+TGG - chr1.3:73137708-73137727 MS.gene91292:intron 30.0%
! CTTTTCTCTTTGTCACATAT+TGG - chr1.3:73136322-73136341 MS.gene91292:intron 30.0%
! TGTCGATTGTTCGAATATAA+AGG - chr1.3:73136950-73136969 MS.gene91292:CDS 30.0%
!! GATACAAGTTTGCTAACTAT+GGG - chr1.3:73138191-73138210 MS.gene91292:CDS 30.0%
!! TGATACAAGTTTGCTAACTA+TGG - chr1.3:73138190-73138209 MS.gene91292:CDS 30.0%
!!! AGAATTGCATTTTTAAGTCC+TGG - chr1.3:73136408-73136427 MS.gene91292:CDS 30.0%
!!! ATGAAGAGTTTTTGGTAACT+TGG - chr1.3:73136897-73136916 MS.gene91292:CDS 30.0%
!!! CTTATCGTTGCTTTTTATGT+AGG + chr1.3:73136087-73136106 None:intergenic 30.0%
!!! CTTTTAGGATAATCTTAGCT+CGG - chr1.3:73137680-73137699 MS.gene91292:intron 30.0%
AAAAGCAATGACGTACACTT+GGG + chr1.3:73136307-73136326 None:intergenic 35.0%
AAAATGTTCCATTTCCCATC+TGG + chr1.3:73135651-73135670 None:intergenic 35.0%
AAACTGCATCATTAAAGCTG+AGG + chr1.3:73136052-73136071 None:intergenic 35.0%
AAAGAAAGAGTTCACACTGT+CGG + chr1.3:73136591-73136610 None:intergenic 35.0%
AAATGTTCCATTTCCCATCT+GGG + chr1.3:73135650-73135669 None:intergenic 35.0%
AATGCACATCCAAGCAATAT+AGG + chr1.3:73136152-73136171 None:intergenic 35.0%
ACATCCAAGCAATATAGGTT+GGG + chr1.3:73136147-73136166 None:intergenic 35.0%
ACTTAAATCTCCTTCACCTT+GGG - chr1.3:73136733-73136752 MS.gene91292:CDS 35.0%
AGTGAAACCAAACATCATCA+TGG + chr1.3:73136487-73136506 None:intergenic 35.0%
ATGAACAGTTTGACATGAGA+TGG - chr1.3:73136435-73136454 MS.gene91292:CDS 35.0%
CAAAACATTGGGTCAATCAT+GGG - chr1.3:73135840-73135859 MS.gene91292:CDS 35.0%
CACACATCATTATAACGTTG+AGG + chr1.3:73137118-73137137 None:intergenic 35.0%
CTATATCCAAAAGTGGTTGT+CGG + chr1.3:73138251-73138270 None:intergenic 35.0%
CTCAGTAACCAAACAAAAGT+GGG + chr1.3:73136194-73136213 None:intergenic 35.0%
CTTCAAAACCAAGTAAGAAG+AGG - chr1.3:73137323-73137342 MS.gene91292:CDS 35.0%
GAACACAACATAGCATTCAT+GGG - chr1.3:73138107-73138126 MS.gene91292:CDS 35.0%
GAACACAACTAGGAAAAGAA+AGG - chr1.3:73137345-73137364 MS.gene91292:intron 35.0%
GACCAAAGATGCCAAAATTA+GGG - chr1.3:73137054-73137073 MS.gene91292:CDS 35.0%
GCATGTACAGTTGAACTTAA+TGG - chr1.3:73137849-73137868 MS.gene91292:CDS 35.0%
GTTGAAATGTCTAGACAATC+TGG - chr1.3:73135810-73135829 MS.gene91292:intron 35.0%
GTTTCAAATTCAATGCCGTT+AGG + chr1.3:73135408-73135427 None:intergenic 35.0%
TAAGGTTATGTGCAAACAGA+CGG + chr1.3:73138369-73138388 None:intergenic 35.0%
TATATTGCTTGGATGTGCAT+TGG - chr1.3:73136151-73136170 MS.gene91292:intron 35.0%
TCAAAACATTGGGTCAATCA+TGG - chr1.3:73135839-73135858 MS.gene91292:CDS 35.0%
TCTTCTGAATAGGTATGATG+AGG - chr1.3:73136670-73136689 MS.gene91292:CDS 35.0%
TTCTTCAATTGCTTCCTTCA+AGG + chr1.3:73136279-73136298 None:intergenic 35.0%
! ACATGTGCTTTCGTTCTTTT+AGG - chr1.3:73137665-73137684 MS.gene91292:intron 35.0%
! CAAGAGTATGCCAAATCTAT+GGG - chr1.3:73135453-73135472 MS.gene91292:intron 35.0%
! GAAATTCCAAGTTGAAGTGT+TGG - chr1.3:73136796-73136815 MS.gene91292:CDS 35.0%
! GCATATCATTTTCGGATTCA+TGG - chr1.3:73135714-73135733 MS.gene91292:intron 35.0%
! TCAAGAGTATGCCAAATCTA+TGG - chr1.3:73135452-73135471 MS.gene91292:intron 35.0%
! TCATGAACTTTTACCAGCTT+TGG - chr1.3:73135692-73135711 MS.gene91292:intron 35.0%
! TTGAACTCCATGATGATGTT+TGG - chr1.3:73136477-73136496 MS.gene91292:CDS 35.0%
!! ATTTGTTTTTCCCAAGGTGA+AGG + chr1.3:73136746-73136765 None:intergenic 35.0%
!! CAGCTTTGGCATATCATTTT+CGG - chr1.3:73135706-73135725 MS.gene91292:intron 35.0%
!! GCTTACGTGTTAAGTTGTTT+TGG - chr1.3:73137393-73137412 MS.gene91292:intron 35.0%
!! GTTGACATTTGTTTTTCCCA+AGG + chr1.3:73136752-73136771 None:intergenic 35.0%
!! TTCCCTAATTTTGGCATCTT+TGG + chr1.3:73137059-73137078 None:intergenic 35.0%
!!! CTTACTTGGTTTTGAAGCAA+GGG + chr1.3:73137320-73137339 None:intergenic 35.0%
!!! TCTGCTGTTTTTAATGGAAG+TGG + chr1.3:73135484-73135503 None:intergenic 35.0%
!!! TCTTACTTGGTTTTGAAGCA+AGG + chr1.3:73137321-73137340 None:intergenic 35.0%
!!! TGATCGTCTGCTGTTTTTAA+TGG + chr1.3:73135490-73135509 None:intergenic 35.0%
AACAGTTTGACATGAGATGG+TGG - chr1.3:73136438-73136457 MS.gene91292:CDS 40.0%
ACAACATAGCATTCATGGGA+TGG - chr1.3:73138111-73138130 MS.gene91292:CDS 40.0%
ACAGTTTGACATGAGATGGT+GGG - chr1.3:73136439-73136458 MS.gene91292:CDS 40.0%
ACATAGTAACCATCATGAGG+TGG + chr1.3:73137877-73137896 None:intergenic 40.0%
ACGAGTTATCAGTTTGACAG+AGG - chr1.3:73135867-73135886 MS.gene91292:CDS 40.0%
ACGTGAAGAAAAACCCAGAT+GGG - chr1.3:73135634-73135653 MS.gene91292:intron 40.0%
ACTCCAACAAAAGGAGCAAA+AGG + chr1.3:73136113-73136132 None:intergenic 40.0%
AGAAAAACCCAGATGGGAAA+TGG - chr1.3:73135640-73135659 MS.gene91292:intron 40.0%
AGGAAAAGAAAGGTCAGTTC+TGG - chr1.3:73137355-73137374 MS.gene91292:intron 40.0%
AGTATTGCGTTGAGTGAAGA+AGG - chr1.3:73137145-73137164 MS.gene91292:CDS 40.0%
AGTGGTGAATCCCATAGATT+TGG + chr1.3:73135466-73135485 None:intergenic 40.0%
CACATCCAAGCAATATAGGT+TGG + chr1.3:73136148-73136167 None:intergenic 40.0%
CACTTAAATCTCCTTCACCT+TGG - chr1.3:73136732-73136751 MS.gene91292:CDS 40.0%
CATGATTAGGACAACTTACC+AGG + chr1.3:73137921-73137940 None:intergenic 40.0%
CATGTCATGAACAAACCTGA+AGG + chr1.3:73138274-73138293 None:intergenic 40.0%
CCTCAGTAACCAAACAAAAG+TGG + chr1.3:73136195-73136214 None:intergenic 40.0%
CGAAAATGATATGCCAAAGC+TGG + chr1.3:73135708-73135727 None:intergenic 40.0%
CGAGTTATCAGTTTGACAGA+GGG - chr1.3:73135868-73135887 MS.gene91292:CDS 40.0%
CTGAAGGCTATATCCAAAAG+TGG + chr1.3:73138258-73138277 None:intergenic 40.0%
GAAAAGCAATGACGTACACT+TGG + chr1.3:73136308-73136327 None:intergenic 40.0%
GAAATGTCTAGACAATCTGG+TGG - chr1.3:73135813-73135832 MS.gene91292:intron 40.0%
GGAACACAACATAGCATTCA+TGG - chr1.3:73138106-73138125 MS.gene91292:CDS 40.0%
GGACACAAAGGATACAAACT+AGG - chr1.3:73137092-73137111 MS.gene91292:CDS 40.0%
GGACCAAAGATGCCAAAATT+AGG - chr1.3:73137053-73137072 MS.gene91292:CDS 40.0%
GTAAGAAGAGGAACACAACT+AGG - chr1.3:73137335-73137354 MS.gene91292:CDS 40.0%
GTAGGGTCCATTGAATTCTA+TGG - chr1.3:73138060-73138079 MS.gene91292:CDS 40.0%
GTGTTCCAAAATACCCATCA+TGG + chr1.3:73138093-73138112 None:intergenic 40.0%
GTTAATCAACACAGCATGCA+AGG - chr1.3:73137895-73137914 MS.gene91292:CDS 40.0%
GTTGTGTTCCTCTTCTTACT+TGG + chr1.3:73137334-73137353 None:intergenic 40.0%
TCAAATTCAATGCCGTTAGG+TGG + chr1.3:73135405-73135424 None:intergenic 40.0%
TCAGGCTCATCCTACAATTA+AGG + chr1.3:73138387-73138406 None:intergenic 40.0%
TGATCAAGACAAAGCCTTGA+AGG - chr1.3:73136262-73136281 MS.gene91292:intron 40.0%
TGATGGTTCACTCCAACAAA+AGG + chr1.3:73136122-73136141 None:intergenic 40.0%
TTCACTCATTGTACGAAGAC+CGG - chr1.3:73136501-73136520 MS.gene91292:CDS 40.0%
TTGTTTGGTTACTGAGGACA+TGG - chr1.3:73136198-73136217 MS.gene91292:intron 40.0%
! AAACACAAACCATTTGCTGC+AGG + chr1.3:73137513-73137532 None:intergenic 40.0%
! AAAGGTCAGTTCTGGTAATG+TGG - chr1.3:73137363-73137382 MS.gene91292:intron 40.0%
! AACACAAACCATTTGCTGCA+GGG + chr1.3:73137512-73137531 None:intergenic 40.0%
! CACTTTTGGATATAGCCTTC+AGG - chr1.3:73138256-73138275 MS.gene91292:CDS 40.0%
! CGAGAAGGATGAAGAGTTTT+TGG - chr1.3:73136889-73136908 MS.gene91292:CDS 40.0%
! TGCTACAGGTTCCCTAATTT+TGG + chr1.3:73137068-73137087 None:intergenic 40.0%
! TTGCCTTTTGCTCCTTTTGT+TGG - chr1.3:73136107-73136126 MS.gene91292:intron 40.0%
!! AACTATGGGTTGGTTCATGT+AGG - chr1.3:73138205-73138224 MS.gene91292:CDS 40.0%
!! ACTATGGGTTGGTTCATGTA+GGG - chr1.3:73138206-73138225 MS.gene91292:CDS 40.0%
!! AGACTAAGCCCACTTTTGTT+TGG - chr1.3:73136183-73136202 MS.gene91292:intron 40.0%
!! ATGGGAGATGTCTTTTTAGC+TGG - chr1.3:73136545-73136564 MS.gene91292:CDS 40.0%
!! CAAGTTTGCTAACTATGGGT+TGG - chr1.3:73138195-73138214 MS.gene91292:CDS 40.0%
!! CCACTTTTGTTTGGTTACTG+AGG - chr1.3:73136192-73136211 MS.gene91292:intron 40.0%
!! TGTCAATGAAGAGCATCACA+CGG - chr1.3:73135314-73135333 MS.gene91292:CDS 40.0%
AACGACAATGGTGCAGAAAC+TGG - chr1.3:73137250-73137269 MS.gene91292:CDS 45.0%
AAGAAAGCTATGCCCCTCTT+AGG + chr1.3:73135360-73135379 None:intergenic 45.0%
AAGACATCTCCCATGTACGT+CGG + chr1.3:73136539-73136558 None:intergenic 45.0%
AGAAAGCTATGCCCCTCTTA+GGG + chr1.3:73135359-73135378 None:intergenic 45.0%
CACGTGAAGAAAAACCCAGA+TGG - chr1.3:73135633-73135652 MS.gene91292:intron 45.0%
CACTCAATGCATGTCTGCAA+AGG + chr1.3:73136979-73136998 None:intergenic 45.0%
CACTCCCAACCTATATTGCT+TGG - chr1.3:73136140-73136159 MS.gene91292:intron 45.0%
CCAAAATACCCATCATGGCT+CGG + chr1.3:73138088-73138107 None:intergenic 45.0%
CTACACCCAACACTTCAACT+TGG + chr1.3:73136805-73136824 None:intergenic 45.0%
CTACTGCTTGCATTGCATCA+AGG - chr1.3:73137609-73137628 MS.gene91292:intron 45.0%
CTCGGAGCCATAGAATTCAA+TGG + chr1.3:73138070-73138089 None:intergenic 45.0%
CTGGTGGCTGTCAAAACATT+GGG - chr1.3:73135829-73135848 MS.gene91292:CDS 45.0%
CTGTAGCAGATAGGACACAA+AGG - chr1.3:73137080-73137099 MS.gene91292:CDS 45.0%
CTTGATGCAATGCAAGCAGT+AGG + chr1.3:73137611-73137630 None:intergenic 45.0%
CTTTGTGTCCTATCTGCTAC+AGG + chr1.3:73137082-73137101 None:intergenic 45.0%
GAACTGTTGCTGTGAAAGTG+TGG + chr1.3:73138411-73138430 None:intergenic 45.0%
GGGGCATAGCTTTCTTTGAA+GGG - chr1.3:73135364-73135383 MS.gene91292:intron 45.0%
GGTGAAGGAGATTTAAGTGC+AGG + chr1.3:73136731-73136750 None:intergenic 45.0%
GTACGAAGACCGGAAAAAGT+GGG - chr1.3:73136511-73136530 MS.gene91292:CDS 45.0%
GTCAAACTGTTCATCTGTCC+AGG + chr1.3:73136429-73136448 None:intergenic 45.0%
GTGTAGCTGGATGTCAATCT+AGG - chr1.3:73136819-73136838 MS.gene91292:CDS 45.0%
GTTACATGAAGCGCATGCTA+TGG + chr1.3:73137647-73137666 None:intergenic 45.0%
TAACACCTGAGTCTGATGGT+AGG - chr1.3:73135562-73135581 MS.gene91292:intron 45.0%
TCAAGATACCCTGCAGCAAA+TGG - chr1.3:73137501-73137520 MS.gene91292:intron 45.0%
TCGGATGCAATTGCCCTTAA+TGG - chr1.3:73137699-73137718 MS.gene91292:intron 45.0%
TCTGGTGGCTGTCAAAACAT+TGG - chr1.3:73135828-73135847 MS.gene91292:CDS 45.0%
TGTACGAAGACCGGAAAAAG+TGG - chr1.3:73136510-73136529 MS.gene91292:CDS 45.0%
TTAATGGAGCCACCTCATGA+TGG - chr1.3:73137865-73137884 MS.gene91292:CDS 45.0%
TTAGGGAACCTGTAGCAGAT+AGG - chr1.3:73137071-73137090 MS.gene91292:CDS 45.0%
TTGAGTGTTCTCCAACGTTG+CGG - chr1.3:73136992-73137011 MS.gene91292:CDS 45.0%
! AAATTCGCGTGCTCTAGGTA+CGG - chr1.3:73135537-73135556 MS.gene91292:intron 45.0%
! ACGGATTTTGAGCCACCTAA+CGG - chr1.3:73135390-73135409 MS.gene91292:intron 45.0%
! AGCTTTCTTTGAAGGGGACA+CGG - chr1.3:73135371-73135390 MS.gene91292:intron 45.0%
! AGGGGCATAGCTTTCTTTGA+AGG - chr1.3:73135363-73135382 MS.gene91292:intron 45.0%
! GCAATATAGGTTGGGAGTGA+TGG + chr1.3:73136139-73136158 None:intergenic 45.0%
! GGGCATAGCTTTCTTTGAAG+GGG - chr1.3:73135365-73135384 MS.gene91292:intron 45.0%
! TATCGTCCGACAACCACTTT+TGG - chr1.3:73138242-73138261 MS.gene91292:CDS 45.0%
! TGGATGTCAATCTAGGACAG+AGG - chr1.3:73136826-73136845 MS.gene91292:CDS 45.0%
! TGTCAATCTAGGACAGAGGT+TGG - chr1.3:73136830-73136849 MS.gene91292:CDS 45.0%
! TTGCTGTGAAAGTGTGGATC+AGG + chr1.3:73138405-73138424 None:intergenic 45.0%
!! CAGTATCTGGCTTTGGATGA+GGG - chr1.3:73135891-73135910 MS.gene91292:intron 45.0%
!! GTCAATGAAGAGCATCACAC+GGG - chr1.3:73135315-73135334 MS.gene91292:CDS 45.0%
ACTGGTTGCTTCCCCTAAGA+GGG - chr1.3:73135344-73135363 MS.gene91292:intron 50.0%
AGGACATGGCTTAGAGCGAT+GGG - chr1.3:73136212-73136231 MS.gene91292:intron 50.0%
ATGCCAAATTCGCGTGCTCT+AGG - chr1.3:73135532-73135551 MS.gene91292:intron 50.0%
CACTTGAACAACCGCAACGT+TGG + chr1.3:73137006-73137025 None:intergenic 50.0%
GAAAGCTATGCCCCTCTTAG+GGG + chr1.3:73135358-73135377 None:intergenic 50.0%
GGAGTAACACCTGAGTCTGA+TGG - chr1.3:73135558-73135577 MS.gene91292:intron 50.0%
GGTACTCAGCAGAATGTGCA+AGG - chr1.3:73137729-73137748 MS.gene91292:CDS 50.0%
GGTGCAGAAACTGGCAACAA+TGG - chr1.3:73137259-73137278 MS.gene91292:CDS 50.0%
GTACCTAGAGCACGCGAATT+TGG + chr1.3:73135538-73135557 None:intergenic 50.0%
GTTCATGTAGGGAGGGCAAT+TGG - chr1.3:73138217-73138236 MS.gene91292:CDS 50.0%
GTTTGACAGAGGGCAGTATC+TGG - chr1.3:73135878-73135897 MS.gene91292:intron 50.0%
TCAGCAGAATGTGCAAGGAC+TGG - chr1.3:73137734-73137753 MS.gene91292:CDS 50.0%
TTCACACTGTCGGAACGTTG+AGG + chr1.3:73136581-73136600 None:intergenic 50.0%
! TCTAGGACAGAGGTTGGAGA+TGG - chr1.3:73136836-73136855 MS.gene91292:CDS 50.0%
! TTGGAACGAGTTGAGCTCAG+AGG - chr1.3:73136916-73136935 MS.gene91292:CDS 50.0%
!! AAAGTGGGTACCGACGTACA+TGG - chr1.3:73136526-73136545 MS.gene91292:CDS 50.0%
!! AAGTGGGTACCGACGTACAT+GGG - chr1.3:73136527-73136546 MS.gene91292:CDS 50.0%
!! AATGAAGAGCATCACACGGG+TGG - chr1.3:73135318-73135337 MS.gene91292:CDS 50.0%
!! ATGGGTTGGTTCATGTAGGG+AGG - chr1.3:73138209-73138228 MS.gene91292:CDS 50.0%
!! GCAGTATCTGGCTTTGGATG+AGG - chr1.3:73135890-73135909 MS.gene91292:intron 50.0%
!! GTTGAAGTGTTGGGTGTAGC+TGG - chr1.3:73136806-73136825 MS.gene91292:CDS 50.0%
!! TCTTGAGCGTCGACAAGTAC+AGG + chr1.3:73137487-73137506 None:intergenic 50.0%
!! TGGCTTTGGATGAGGGAGAT+GGG - chr1.3:73135898-73135917 MS.gene91292:intron 50.0%
!! TGGGTTGGTTCATGTAGGGA+GGG - chr1.3:73138210-73138229 MS.gene91292:CDS 50.0%
!!! ACGTCGGTACCCACTTTTTC+CGG + chr1.3:73136523-73136542 None:intergenic 50.0%
!!! CCGAGCCATGATGGGTATTT+TGG - chr1.3:73138085-73138104 MS.gene91292:CDS 50.0%
ACATGGCTTAGAGCGATGGG+AGG - chr1.3:73136215-73136234 MS.gene91292:intron 55.0%
ACTGTCGGAACGTTGAGGTG+TGG + chr1.3:73136576-73136595 None:intergenic 55.0%
CATGGCTTAGAGCGATGGGA+GGG - chr1.3:73136216-73136235 MS.gene91292:intron 55.0%
CTATGGCTCCGAGCCATGAT+GGG - chr1.3:73138077-73138096 MS.gene91292:CDS 55.0%
CTGCTCCTACCATCAGACTC+AGG + chr1.3:73135570-73135589 None:intergenic 55.0%
CTGGTTGCTTCCCCTAAGAG+GGG - chr1.3:73135345-73135364 MS.gene91292:intron 55.0%
GAGGACATGGCTTAGAGCGA+TGG - chr1.3:73136211-73136230 MS.gene91292:intron 55.0%
GGGAGATGGGCAAGTTATGC+TGG - chr1.3:73135911-73135930 MS.gene91292:intron 55.0%
TCAACACAGCATGCAAGGCC+TGG - chr1.3:73137900-73137919 MS.gene91292:CDS 55.0%
TCTATGGCTCCGAGCCATGA+TGG - chr1.3:73138076-73138095 MS.gene91292:CDS 55.0%
! CACTGGTTGCTTCCCCTAAG+AGG - chr1.3:73135343-73135362 MS.gene91292:intron 55.0%
! CAGAGGGCAGTATCTGGCTT+TGG - chr1.3:73135884-73135903 MS.gene91292:intron 55.0%
!! CTGGCTTTGGATGAGGGAGA+TGG - chr1.3:73135897-73135916 MS.gene91292:intron 55.0%
GCATCACACGGGTGGTGCAC+TGG - chr1.3:73135326-73135345 MS.gene91292:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 73135303 73138443 73135303 ID=MS.gene91292
chr1.3 mRNA 73135303 73138443 73135303 ID=MS.gene91292.t1;Parent=MS.gene91292
chr1.3 exon 73137724 73138443 73137724 ID=MS.gene91292.t1.exon1;Parent=MS.gene91292.t1
chr1.3 CDS 73137724 73138443 73137724 ID=cds.MS.gene91292.t1;Parent=MS.gene91292.t1
chr1.3 exon 73136380 73137363 73136380 ID=MS.gene91292.t1.exon2;Parent=MS.gene91292.t1
chr1.3 CDS 73136380 73137363 73136380 ID=cds.MS.gene91292.t1;Parent=MS.gene91292.t1
chr1.3 exon 73136224 73136280 73136224 ID=MS.gene91292.t1.exon3;Parent=MS.gene91292.t1
chr1.3 CDS 73136224 73136280 73136224 ID=cds.MS.gene91292.t1;Parent=MS.gene91292.t1
chr1.3 exon 73135991 73136059 73135991 ID=MS.gene91292.t1.exon4;Parent=MS.gene91292.t1
chr1.3 CDS 73135991 73136059 73135991 ID=cds.MS.gene91292.t1;Parent=MS.gene91292.t1
chr1.3 exon 73135825 73135896 73135825 ID=MS.gene91292.t1.exon5;Parent=MS.gene91292.t1
chr1.3 CDS 73135825 73135896 73135825 ID=cds.MS.gene91292.t1;Parent=MS.gene91292.t1
chr1.3 exon 73135469 73135519 73135469 ID=MS.gene91292.t1.exon6;Parent=MS.gene91292.t1
chr1.3 CDS 73135469 73135519 73135469 ID=cds.MS.gene91292.t1;Parent=MS.gene91292.t1
chr1.3 exon 73135303 73135350 73135303 ID=MS.gene91292.t1.exon7;Parent=MS.gene91292.t1
chr1.3 CDS 73135303 73135350 73135303 ID=cds.MS.gene91292.t1;Parent=MS.gene91292.t1
Gene Sequence

>MS.gene91292

ATGGGTGACTCTGTCAATGAAGAGCATCACACGGGTGGTGCACTGGTTGCTTCCCCTAAGAGGGGCATAGCTTTCTTTGAAGGGGACACGGATTTTGAGCCACCTAACGGCATTGAATTTGAAACTCATGAAGCAGCATATTCATTTTATCAAGAGTATGCCAAATCTATGGGATTCACCACTTCCATTAAAAACAGCAGACGATCAAAGAAGACCAAAGAATTTATTGATGCCAAATTCGCGTGCTCTAGGTACGGAGTAACACCTGAGTCTGATGGTAGGAGCAGTCGAAGATCGAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCACGTGAAGAAAAACCCAGATGGGAAATGGAACATTTTTGAATTTATAAAGGATCATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATGGAAACGTGAAGTTAGCTGACAAGAATAATATTGATATCTTGCATGCTGTTAGTGAACGTACCCGAAAGATGTATGTTGAAATGTCTAGACAATCTGGTGGCTGTCAAAACATTGGGTCAATCATGGGTGATACGAGTTATCAGTTTGACAGAGGGCAGTATCTGGCTTTGGATGAGGGAGATGGGCAAGTTATGCTGGAGTATTTCAAGCATATTCAAAAGGAGGATCCCAACTTCTTCTATTCTATAGATTTAAACGAGGAACAACGTTTAAGAAATATATTTTGGGTTGATTCAAAAAGCATCGATGATTACCTCAGCTTTAATGATGCAGTTTCATTTGATACTTCCTACATAAAAAGCAACGATAAGTTGCCTTTTGCTCCTTTTGTTGGAGTGAACCATCACTCCCAACCTATATTGCTTGGATGTGCATTGGTTGCTGATGAGACTAAGCCCACTTTTGTTTGGTTACTGAGGACATGGCTTAGAGCGATGGGAGGGCAAGCTCCCAAAGTTATAGTCACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTCTTCCCAAGTGTACGTCATTGCTTTTCTCTTTGTCACATATTGGAAAAGATACCTGAAAATCTGTCTTTTGTGATAAAACAGTACAAGAACTTCTTGCCAAAGTTTAAGAATTGCATTTTTAAGTCCTGGACAGATGAACAGTTTGACATGAGATGGTGGGAAATAGTGACTATATTTGAACTCCATGATGATGTTTGGTTTCACTCATTGTACGAAGACCGGAAAAAGTGGGTACCGACGTACATGGGAGATGTCTTTTTAGCTGGAATGTCCACACCTCAACGTTCCGACAGTGTGAACTCTTTCTTTGACAAATACATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAACAGTATAGGTTAATTCTTCTGAATAGGTATGATGAGGAAGAAATCGCAGATTTTGATACATTGCACAAACAACCTGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAATTTATACACATGCAATATTTAAGAAATTCCAAGTTGAAGTGTTGGGTGTAGCTGGATGTCAATCTAGGACAGAGGTTGGAGATGGAACTGTTGTGAGATATATAGTTCAAGATTACGAGAAGGATGAAGAGTTTTTGGTAACTTGGAACGAGTTGAGCTCAGAGGTCTCTTGCTTCTGTCGATTGTTCGAATATAAAGGTTTCCTTTGCAGACATGCATTGAGTGTTCTCCAACGTTGCGGTTGTTCAAGTGTTCCATCTCATTATATCATGAAGAGATGGACCAAAGATGCCAAAATTAGGGAACCTGTAGCAGATAGGACACAAAGGATACAAACTAGGCCTCAACGTTATAATGATGTGTGCAAACGAAGTATTGCGTTGAGTGAAGAAGGATCATCATCCGAAGAGAGTTATAATGTTGCTTTGCGCGCGCTTGTTGATGCTTTGAAGAACTGTGTACTTGTAAATAACTCTAACGACAATGGTGCAGAAACTGGCAACAATGGTTACAGTCTTCGCGAAGCAGAAGAATATCAGAGTACCCTTGCTTCAAAACCAAGTAAGAAGAGGAACACAACTAGGAAAAGAAAGGTCAGTTCTGGTAATGTGGTTTTAGTGCTTACGTGTTAAGTTGTTTTGGCTTTCTAGCATTTAAAAGATCAGGAAATTGATACGAGAATCACTTTATAGGTGCAACAAGAGCAGAGTCCTGTACTTGTCGACGCTCAAGATACCCTGCAGCAAATGGTTTGTGTTTCCTCTTTTTTCATTCATGATCTGTTTTAGATTATACAAATAAATCTTGAGAATTGCATTTCTATTTTCATGAATTCCTACTGCTTGCATTGCATCAAGGCTGAAAAGAGATCCATAGCATGCGCTTCATGTAACATGTGCTTTCGTTCTTTTAGGATAATCTTAGCTCGGATGCAATTGCCCTTAATGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGGTAAATTTACATGTTAACCATCAAATGATTACAATGTTCTGTATTTTAAGAACTAAAAGTAATGCTTAATAGATTGTAATTTTGGTTTCTGTAGCATGTACAGTTGAACTTAATGGAGCCACCTCATGATGGTTACTATGTTAATCAACACAGCATGCAAGGCCTGGTAAGTTGTCCTAATCATGAATATAATCTTCTGATACGATTATCTTATATAATTAATTATTAATTATAAAGGAATAAGATTATTTATTAATTGTATTTCAAAAAAAAAATTATTTATTAAATTGATATTCATATCGCTGTAGGGTCCATTGAATTCTATGGCTCCGAGCCATGATGGGTATTTTGGAACACAACATAGCATTCATGGGATGGTAGAGTACTTTCCTATGAAATTATTGGGAAATTATATTAATTAACATTAATTAATATGATACAAGTTTGCTAACTATGGGTTGGTTCATGTAGGGAGGGCAATTGGAGTATCGTCCGACAACCACTTTTGGATATAGCCTTCAGGTTTGTTCATGACATGTACCATATACTTAGTTACTTATTAGCATTTGAACTTGGAGATTTGAATAGAATAATTTGTGCTTGGTTTTCACCGTCTGTTTGCACATAACCTTAATTGTAGGATGAGCCTGATCCACACTTTCACAGCAACAGTTCAAGAAATACTTAG
Protein sequence

>MS.gene91292.t1

MGDSVNEEHHTGGALVASPKRGIAFFEGDTDFEPPNGIEFETHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGRSSRRSSVKKTDCKACMHVKKNPDGKWNIFEFIKDHNHELLPALAYHFRIHGNVKLADKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSIMGDTSYQFDRGQYLALDEGDGQVMLEYFKHIQKEDPNFFYSIDLNEEQRLRNIFWYKNFLPKFKNCIFKSWTDEQFDMRWWEIVTIFELHDDVWFHSLYEDRKKWVPTYMGDVFLAGMSTPQRSDSVNSFFDKYIHKKITLKEFVKQYRLILLNRYDEEEIADFDTLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRTEVGDGTVVRYIVQDYEKDEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKIREPVADRTQRIQTRPQRYNDVCKRSIALSEEGSSSEESYNVALRALVDALKNCVLVNNSNDNGAETGNNGYSLREAEEYQSTLASKPSKKRNTTRKRKVQQEQSPVLVDAQDTLQQMDNLSSDAIALNGYYGTQQNVQGLHVQLNLMEPPHDGYYVNQHSMQGLGGQLEYRPTTTFGYSLQDEPDPHFHSNSSRNT