AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060284

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060284.t1 MTR_1g008290 34.921 126 79 1 103 228 22 144 3.05e-22 94.0
MS.gene060284.t1 MTR_4g035820 25.661 378 239 11 29 387 70 424 1.49e-19 93.6
MS.gene060284.t1 MTR_6g051425 25.926 216 143 5 37 240 20 230 2.33e-17 84.3
MS.gene060284.t1 MTR_3g006370 37.383 107 60 2 33 134 49 153 2.77e-16 79.0
MS.gene060284.t1 MTR_4g067290 28.889 135 92 2 3 136 28 159 1.51e-14 74.3
MS.gene060284.t1 MTR_4g067290 28.889 135 92 2 3 136 28 159 1.53e-14 74.3
MS.gene060284.t1 MTR_4g067290 28.889 135 92 2 3 136 48 179 2.39e-14 73.9
MS.gene060284.t1 MTR_4g067290 28.889 135 92 2 3 136 48 179 2.42e-14 73.9
MS.gene060284.t1 MTR_4g067290 28.889 135 92 2 3 136 46 177 2.65e-14 73.9
MS.gene060284.t1 MTR_4g067290 28.889 135 92 2 3 136 88 219 2.94e-14 74.3
MS.gene060284.t1 MTR_1g070355 28.910 211 135 7 39 240 79 283 5.77e-13 72.4
MS.gene060284.t1 MTR_6g022070 31.111 135 90 3 244 376 34 167 2.97e-12 68.9
MS.gene060284.t1 MTR_2g098880 31.250 112 72 2 28 134 54 165 7.00e-12 66.6
MS.gene060284.t1 MTR_2g098880 31.250 112 72 2 28 134 66 177 7.62e-12 66.6
MS.gene060284.t1 MTR_8g465780 29.231 130 87 3 283 408 1 129 6.61e-11 62.4
MS.gene060284.t1 MTR_5g076070 25.333 225 152 8 27 240 43 262 8.94e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060284.t1 AT4G15090 60.321 436 169 2 241 676 381 812 0.0 558
MS.gene060284.t1 AT4G15090 76.577 222 49 2 22 240 39 260 5.72e-108 346
MS.gene060284.t1 AT4G15090 60.321 436 169 2 241 676 381 812 0.0 558
MS.gene060284.t1 AT4G15090 76.577 222 49 2 22 240 39 260 5.72e-108 346
MS.gene060284.t1 AT4G15090 60.321 436 169 2 241 676 381 812 0.0 558
MS.gene060284.t1 AT4G15090 76.577 222 49 2 22 240 39 260 5.72e-108 346
MS.gene060284.t1 AT4G15090 60.321 436 169 2 241 676 381 812 0.0 558
MS.gene060284.t1 AT4G15090 76.577 222 49 2 22 240 39 260 5.72e-108 346
MS.gene060284.t1 AT4G15090 60.321 436 169 2 241 676 381 812 0.0 558
MS.gene060284.t1 AT4G15090 76.577 222 49 2 22 240 39 260 5.72e-108 346
MS.gene060284.t1 AT3G22170 51.982 454 209 6 241 689 390 839 7.00e-150 456
MS.gene060284.t1 AT3G22170 43.777 233 93 3 23 240 60 269 3.28e-57 208
MS.gene060284.t1 AT3G22170 51.982 454 209 6 241 689 390 839 7.00e-150 456
MS.gene060284.t1 AT3G22170 43.777 233 93 3 23 240 60 269 3.28e-57 208
MS.gene060284.t1 AT1G76320 44.479 317 170 2 240 552 317 631 2.25e-94 306
MS.gene060284.t1 AT1G76320 44.335 203 107 2 38 240 1 197 1.34e-50 187
MS.gene060284.t1 AT1G76320 44.479 317 170 2 240 552 317 631 4.51e-94 307
MS.gene060284.t1 AT1G76320 44.335 203 107 2 38 240 1 197 2.36e-50 187
MS.gene060284.t1 AT1G76320 44.479 317 170 2 240 552 317 631 5.30e-94 307
MS.gene060284.t1 AT1G76320 44.335 203 107 2 38 240 1 197 2.61e-50 187
MS.gene060284.t1 AT1G76320 44.479 317 170 2 240 552 317 631 5.30e-94 307
MS.gene060284.t1 AT1G76320 44.335 203 107 2 38 240 1 197 2.61e-50 187
MS.gene060284.t1 AT4G19990 44.000 425 198 9 242 660 273 663 1.02e-88 292
MS.gene060284.t1 AT4G19990 33.696 184 72 2 72 240 2 150 2.80e-22 102
MS.gene060284.t1 AT4G19990 44.000 425 198 9 242 660 330 720 1.32e-88 293
MS.gene060284.t1 AT4G19990 39.912 228 81 5 31 240 18 207 1.92e-36 146
MS.gene060284.t1 AT4G19990 44.000 425 198 9 242 660 330 720 1.32e-88 293
MS.gene060284.t1 AT4G19990 39.912 228 81 5 31 240 18 207 1.92e-36 146
MS.gene060284.t1 AT4G19990 44.000 425 198 9 242 660 330 720 1.90e-88 293
MS.gene060284.t1 AT4G19990 38.938 226 86 4 31 240 18 207 1.91e-36 146
MS.gene060284.t1 AT4G19990 44.000 425 198 9 242 660 330 720 2.01e-88 293
MS.gene060284.t1 AT4G19990 37.778 225 90 2 31 240 18 207 2.97e-36 146
MS.gene060284.t1 AT4G19990 44.000 425 198 9 242 660 330 720 2.01e-88 293
MS.gene060284.t1 AT4G19990 37.778 225 90 2 31 240 18 207 2.97e-36 146
MS.gene060284.t1 AT4G19990 44.000 425 198 9 242 660 344 734 2.61e-88 293
MS.gene060284.t1 AT4G19990 39.912 228 81 5 31 240 32 221 2.48e-36 146
MS.gene060284.t1 AT2G32250 36.585 451 256 7 244 670 287 731 1.99e-80 271
MS.gene060284.t1 AT2G32250 36.946 203 88 3 38 240 1 163 1.04e-27 119
MS.gene060284.t1 AT2G32250 36.585 451 256 7 244 670 328 772 5.99e-80 271
MS.gene060284.t1 AT2G32250 37.500 208 90 3 33 240 37 204 3.68e-29 124
MS.gene060284.t1 AT2G32250 36.585 451 256 7 244 670 328 772 5.99e-80 271
MS.gene060284.t1 AT2G32250 37.500 208 90 3 33 240 37 204 3.68e-29 124
MS.gene060284.t1 AT2G32250 36.504 452 257 7 244 670 287 733 6.18e-80 270
MS.gene060284.t1 AT2G32250 36.946 203 88 3 38 240 1 163 1.15e-27 119
MS.gene060284.t1 AT2G32250 36.504 452 257 7 244 670 328 774 1.21e-79 270
MS.gene060284.t1 AT2G32250 37.500 208 90 3 33 240 37 204 3.38e-29 124
MS.gene060284.t1 AT2G32250 36.504 452 257 7 244 670 328 774 1.21e-79 270
MS.gene060284.t1 AT2G32250 37.500 208 90 3 33 240 37 204 3.38e-29 124
MS.gene060284.t1 AT2G32250 36.504 452 257 7 244 670 328 774 1.21e-79 270
MS.gene060284.t1 AT2G32250 37.500 208 90 3 33 240 37 204 3.38e-29 124
MS.gene060284.t1 AT2G32250 38.118 425 240 4 244 658 328 739 3.09e-79 268
MS.gene060284.t1 AT2G32250 37.500 208 90 3 33 240 37 204 2.87e-29 124
MS.gene060284.t1 AT4G38180 34.539 304 192 3 232 528 395 698 1.67e-54 200
MS.gene060284.t1 AT4G38180 34.259 216 135 3 31 240 70 284 2.10e-30 128
MS.gene060284.t1 AT2G27110 33.677 291 184 4 241 526 207 493 5.88e-48 180
MS.gene060284.t1 AT2G27110 33.677 291 184 4 241 526 352 638 9.53e-48 181
MS.gene060284.t1 AT2G27110 27.751 209 125 5 33 240 48 231 3.20e-17 86.7
MS.gene060284.t1 AT2G27110 33.677 291 184 4 241 526 352 638 9.53e-48 181
MS.gene060284.t1 AT2G27110 27.751 209 125 5 33 240 48 231 3.20e-17 86.7
MS.gene060284.t1 AT1G52520 34.754 305 177 6 233 520 393 692 2.99e-47 178
MS.gene060284.t1 AT1G52520 31.308 214 132 6 34 244 85 286 1.02e-21 100
MS.gene060284.t1 AT4G38170 30.211 331 208 5 232 548 160 481 7.13e-46 172
MS.gene060284.t1 AT1G80010 31.522 276 174 8 259 524 444 714 1.83e-37 149
MS.gene060284.t1 AT1G80010 29.767 215 140 4 34 240 95 306 2.23e-19 93.2
MS.gene060284.t1 AT5G18960 31.276 243 163 2 229 470 490 729 3.79e-34 139
MS.gene060284.t1 AT5G18960 31.276 243 163 2 229 470 490 729 3.79e-34 139
MS.gene060284.t1 AT3G06250 31.174 247 164 3 225 470 464 705 5.32e-34 139
MS.gene060284.t1 AT3G06250 33.929 112 63 1 22 133 16 116 6.73e-11 66.2
MS.gene060284.t1 AT3G06250 31.174 247 164 3 225 470 464 705 5.32e-34 139
MS.gene060284.t1 AT3G06250 33.929 112 63 1 22 133 16 116 6.73e-11 66.2
MS.gene060284.t1 AT3G06250 31.174 247 164 3 225 470 464 705 5.32e-34 139
MS.gene060284.t1 AT3G06250 33.929 112 63 1 22 133 16 116 6.73e-11 66.2
MS.gene060284.t1 AT1G10240 30.131 229 151 3 259 482 401 625 4.73e-26 114
MS.gene060284.t1 AT1G10240 27.928 222 138 8 34 240 48 262 1.09e-11 68.6
MS.gene060284.t1 AT1G10240 30.131 229 151 3 259 482 401 625 4.73e-26 114
MS.gene060284.t1 AT1G10240 27.928 222 138 8 34 240 48 262 1.09e-11 68.6
MS.gene060284.t1 AT5G28530 30.594 219 125 7 259 468 353 553 9.38e-19 90.9
MS.gene060284.t1 AT5G28530 29.224 219 132 6 259 468 353 557 1.29e-18 90.5
MS.gene060284.t1 AT5G28530 30.594 219 125 7 259 468 416 616 1.47e-18 90.5
MS.gene060284.t1 AT5G28530 30.594 219 125 7 259 468 416 616 1.47e-18 90.5
MS.gene060284.t1 AT5G28530 28.270 237 146 7 241 468 399 620 1.96e-18 90.1
MS.gene060284.t1 AT2G43280 36.975 119 66 3 29 140 17 133 6.39e-16 77.4
MS.gene060284.t1 AT4G12850 39.604 101 60 1 33 133 10 109 4.93e-15 73.2
MS.gene060284.t1 AT4G12850 39.604 101 60 1 33 133 10 109 6.17e-15 72.8
MS.gene060284.t1 AT3G59470 34.286 105 68 1 33 136 69 173 1.34e-14 74.7
MS.gene060284.t1 AT3G59470 34.286 105 68 1 33 136 69 173 1.34e-14 74.7
MS.gene060284.t1 AT3G59470 34.286 105 68 1 33 136 81 185 1.45e-14 74.7
MS.gene060284.t1 AT4G12850 39.604 101 60 1 33 133 10 109 2.67e-14 72.4
MS.gene060284.t1 AT3G07500 30.380 158 94 4 27 179 26 172 2.78e-14 73.2
MS.gene060284.t1 AT2G43280 35.354 99 55 3 49 140 2 98 3.87e-11 62.8

Find 138 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTACAGGTTCCCTAATTT+TGG 0.141551 1.2:+79582219 None:intergenic
CCGAGCCATGATGGGTATTT+TGG 0.151356 1.2:-79581184 MS.gene060284:CDS
ACTGTTTCACAAACTCTTTA+AGG 0.204134 1.2:+79582647 None:intergenic
AACGTTTAAGAAATATATTT+TGG 0.206444 1.2:-79583284 MS.gene060284:CDS
TCGGATGCAATTGCCCTTAA+TGG 0.236596 1.2:-79581570 MS.gene060284:CDS
ATTGCCCTTAATGGATATTA+TGG 0.237741 1.2:-79581561 MS.gene060284:CDS
GGACCAAAGATGCCAAAATT+AGG 0.253094 1.2:-79582231 MS.gene060284:CDS
CATTTCAACATACATCTTTC+GGG 0.258771 1.2:+79583488 None:intergenic
TGTCGATTGTTCGAATATAA+AGG 0.270665 1.2:-79582334 MS.gene060284:CDS
GAGTACCATAATATCCATTA+AGG 0.276199 1.2:+79581556 None:intergenic
TCAAGAGTATGCCAAATCTA+TGG 0.278613 1.2:-79583832 MS.gene060284:CDS
ATACCTAGAGCACGCGAATT+TGG 0.279686 1.2:+79583749 None:intergenic
ACATTTCAACATACATCTTT+CGG 0.295052 1.2:+79583487 None:intergenic
AAGAAAGCTATGCCCCTCTT+AGG 0.295788 1.2:+79583927 None:intergenic
CTGTTTCACAAACTCTTTAA+GGG 0.296391 1.2:+79582648 None:intergenic
GCATGTACAGTTGAACTTAA+TGG 0.318417 1.2:-79581420 MS.gene060284:CDS
TATCGTCCGACAACCACTTT+TGG 0.332110 1.2:-79581025 MS.gene060284:CDS
AAAATGCAATTCTTAAACTT+TGG 0.338533 1.2:+79582886 None:intergenic
AAAATGTTCCATTTCCCATC+TGG 0.352283 1.2:+79583636 None:intergenic
GTAGGGTCCATTGAATTCTA+TGG 0.362242 1.2:-79581209 MS.gene060284:intron
AACGACAATGGTGCAGAAAC+TGG 0.362647 1.2:-79582034 MS.gene060284:CDS
GTTTGACAGAGGGCAGTATC+TGG 0.368111 1.2:-79583406 MS.gene060284:CDS
ATAGGTTAATTCTTCTGAAT+AGG 0.384277 1.2:-79582624 MS.gene060284:CDS
GTTGTGTTCCTCTTCTTACT+TGG 0.388273 1.2:+79581953 None:intergenic
GGAACACAACAAAGCATTCA+TGG 0.390771 1.2:-79581163 MS.gene060284:CDS
TTAACATAGTAACCATCATT+AGG 0.398276 1.2:+79581392 None:intergenic
AGAAAGCTATGCCCCTCTTA+GGG 0.402896 1.2:+79583928 None:intergenic
ATCTATAGAATAGAAGAAGT+TGG 0.403398 1.2:+79583320 None:intergenic
CTTTGTGTCCTATCTGCTAC+AGG 0.407215 1.2:+79582205 None:intergenic
AAGAGTTTGTGAAACAGTAT+AGG 0.409635 1.2:-79582642 MS.gene060284:CDS
AGTGGTGAATCCCATAGATT+TGG 0.415385 1.2:+79583821 None:intergenic
CAGAGGGCAGTATCTGGCTT+TGG 0.416018 1.2:-79583400 MS.gene060284:CDS
CACTGGTTGCTTCCCCTAAG+AGG 0.417880 1.2:-79583941 MS.gene060284:CDS
GACCAAAGATGCCAAAATTA+GGG 0.426826 1.2:-79582230 MS.gene060284:CDS
TTGAACTCCATGATGATGTT+TGG 0.435488 1.2:-79582807 MS.gene060284:CDS
AAATGTTCCATTTCCCATCT+GGG 0.441346 1.2:+79583637 None:intergenic
TTGCTGTGAAAGTGTGGATC+AGG 0.445132 1.2:+79580865 None:intergenic
TCAAAACATTGGGTCAATCA+TGG 0.447302 1.2:-79583445 MS.gene060284:CDS
GTTGAAGTGTTGGGTGTAGC+TGG 0.449517 1.2:-79582478 MS.gene060284:CDS
GTTCATGTAGGGAGGGCAAT+TGG 0.449744 1.2:-79581050 MS.gene060284:intron
CACTTAAATCTCCGTCACCT+TGG 0.457310 1.2:-79582552 MS.gene060284:CDS
TCTATAGAATAGAAGAAGTT+GGG 0.462776 1.2:+79583321 None:intergenic
GGGAGATGGGCAAGTTATGC+TGG 0.466240 1.2:-79583373 MS.gene060284:CDS
GCAGTATCTGGCTTTGGATG+AGG 0.466634 1.2:-79583394 MS.gene060284:CDS
TCAAGATACCCTGCAGCAAA+TGG 0.469548 1.2:-79581783 MS.gene060284:intron
GTTGAAATGTCTAGACAATC+TGG 0.471543 1.2:-79583474 MS.gene060284:CDS
GAAATTCCAAGTTGAAGTGT+TGG 0.475026 1.2:-79582488 MS.gene060284:CDS
AGCAACATTATAACTCTCTT+CGG 0.478706 1.2:+79582108 None:intergenic
ACTTAAATCTCCGTCACCTT+GGG 0.479135 1.2:-79582551 MS.gene060284:CDS
ATGCCAAATTCGCGTGCTCT+AGG 0.479668 1.2:-79583752 MS.gene060284:CDS
AGGGGCATAGCTTTCTTTGA+AGG 0.480618 1.2:-79583921 MS.gene060284:CDS
ACTGGTTGCTTCCCCTAAGA+GGG 0.487153 1.2:-79583940 MS.gene060284:CDS
AAATTCCAAGTTGAAGTGTT+GGG 0.488182 1.2:-79582487 MS.gene060284:CDS
CTGGTGGCTGTCAAAACATT+GGG 0.488703 1.2:-79583455 MS.gene060284:CDS
GTATTTCAAGCATATTCAAA+AGG 0.489011 1.2:-79583349 MS.gene060284:CDS
GTCAAACTGTTCATCTGTCC+AGG 0.491245 1.2:+79582858 None:intergenic
GTGTAGCTGGATGTCAATCT+AGG 0.493252 1.2:-79582465 MS.gene060284:CDS
TTCACTCATTGTACGAAGAC+CGG 0.494147 1.2:-79582783 MS.gene060284:CDS
CTGGCTTTGGATGAGGGAGA+TGG 0.494760 1.2:-79583387 MS.gene060284:CDS
GTTTCAAATTCAATGCCGTT+AGG 0.501314 1.2:+79583879 None:intergenic
CGAAAATGATATGCCAAAGC+TGG 0.503037 1.2:+79583579 None:intergenic
AGTACCATAATATCCATTAA+GGG 0.503128 1.2:+79581557 None:intergenic
AGTATTGCGTTGAGTGAAGA+AGG 0.512046 1.2:-79582139 MS.gene060284:CDS
GCATCACACGGGTGGTGCAC+TGG 0.518829 1.2:-79583958 MS.gene060284:CDS
CAGTATCTGGCTTTGGATGA+GGG 0.524524 1.2:-79583393 MS.gene060284:CDS
CAAGAGTATGCCAAATCTAT+GGG 0.524696 1.2:-79583831 MS.gene060284:CDS
CAAAACATTGGGTCAATCAT+GGG 0.529150 1.2:-79583444 MS.gene060284:CDS
TCTATGGCTCCGAGCCATGA+TGG 0.529480 1.2:-79581193 MS.gene060284:CDS
GGTGACGGAGATTTAAGTGC+AGG 0.530420 1.2:+79582556 None:intergenic
GGGGCATAGCTTTCTTTGAA+GGG 0.530599 1.2:-79583920 MS.gene060284:CDS
CACTCAATGCGTGTCTGCAA+AGG 0.530792 1.2:+79582308 None:intergenic
TCTTGAGCGTCGACAAGTAC+AGG 0.531111 1.2:+79581800 None:intergenic
TCAACACAGCATGCAAGGCC+TGG 0.531717 1.2:-79581369 MS.gene060284:intron
CACTTGAACAACCGCAACGT+TGG 0.534327 1.2:+79582281 None:intergenic
TGGCTTTGGATGAGGGAGAT+GGG 0.535356 1.2:-79583386 MS.gene060284:CDS
AGCTTTCTTTGAAGGGGACA+CGG 0.537323 1.2:-79583913 MS.gene060284:CDS
AAACACAAACCATTTGCTGC+AGG 0.538027 1.2:+79581774 None:intergenic
CTATGGCTCCGAGCCATGAT+GGG 0.544403 1.2:-79581192 MS.gene060284:CDS
CTGAAGGCTATATCCAAAAG+TGG 0.546535 1.2:+79581012 None:intergenic
CTACACCCAACACTTCAACT+TGG 0.546709 1.2:+79582482 None:intergenic
TTAGGGAACCTGTAGCAGAT+AGG 0.546715 1.2:-79582213 MS.gene060284:CDS
CTCGGAGCCATAGAATTCAA+TGG 0.548526 1.2:+79581202 None:intergenic
TCTGGTGGCTGTCAAAACAT+TGG 0.549465 1.2:-79583456 MS.gene060284:CDS
CTCATTATATCATGAAGAGA+TGG 0.550080 1.2:-79582252 MS.gene060284:CDS
GAACACAACAAAGCATTCAT+GGG 0.550109 1.2:-79581162 MS.gene060284:CDS
AAATTCGCGTGCTCTAGGTA+TGG 0.552712 1.2:-79583747 MS.gene060284:CDS
AGTGAAACCAAACATCATCA+TGG 0.555179 1.2:+79582800 None:intergenic
CTATATCCAAAAGTGGTTGT+CGG 0.558538 1.2:+79581019 None:intergenic
TGTCAATCTAGGACAGAGGT+TGG 0.561454 1.2:-79582454 MS.gene060284:CDS
GAACACAACTAGGAAAAGAA+AGG 0.562569 1.2:-79581939 MS.gene060284:intron
TTAATGGAGCCACCTAATGA+TGG 0.563009 1.2:-79581404 MS.gene060284:CDS
CCAAAATACCCATCATGGCT+CGG 0.565207 1.2:+79581184 None:intergenic
TCAGCAGAATGTGCAAGGAC+TGG 0.567200 1.2:-79581535 MS.gene060284:intron
GTTAATCAACACAGCATGCA+AGG 0.568293 1.2:-79581374 MS.gene060284:CDS
GTAAGAAGAGGAACACAACT+AGG 0.569051 1.2:-79581949 MS.gene060284:CDS
CTTCAAAACCAAGTAAGAAG+AGG 0.570332 1.2:-79581961 MS.gene060284:CDS
GTGTTCCAAAATACCCATCA+TGG 0.572223 1.2:+79581179 None:intergenic
TTTCAAGCATATTCAAAAGG+AGG 0.574379 1.2:-79583346 MS.gene060284:CDS
CTCTTCATGATATAATGAGA+TGG 0.574857 1.2:+79582256 None:intergenic
GTAAATAACTCTAACGACAA+TGG 0.578738 1.2:-79582046 MS.gene060284:CDS
GGGCATAGCTTTCTTTGAAG+GGG 0.579841 1.2:-79583919 MS.gene060284:CDS
GGACACAAAGGATACAAACT+AGG 0.580462 1.2:-79582192 MS.gene060284:CDS
GAACTGTTGCTGTGAAAGTG+TGG 0.585833 1.2:+79580859 None:intergenic
GGTGCAGAAACTGGCAACAA+TGG 0.585898 1.2:-79582025 MS.gene060284:CDS
TCAAATTCAATGCCGTTAGG+TGG 0.590422 1.2:+79583882 None:intergenic
CACACATCATTATAACGTTG+AGG 0.592933 1.2:+79582169 None:intergenic
TCTAGGACAGAGGTTGGAGA+TGG 0.594905 1.2:-79582448 MS.gene060284:CDS
AAAGTGGGTACCGACGTACA+TGG 0.600111 1.2:-79582758 MS.gene060284:CDS
AACACAAACCATTTGCTGCA+GGG 0.603531 1.2:+79581775 None:intergenic
TTGAGTGTTCTCCAACGTTG+CGG 0.607123 1.2:-79582292 MS.gene060284:CDS
GAAAGCTATGCCCCTCTTAG+GGG 0.607330 1.2:+79583929 None:intergenic
GGTACTCAGCAGAATGTGCA+AGG 0.609447 1.2:-79581540 MS.gene060284:CDS
CGAGTTATCAGTTTGACAGA+GGG 0.612110 1.2:-79583416 MS.gene060284:CDS
AAGTGGGTACCGACGTACAT+GGG 0.612237 1.2:-79582757 MS.gene060284:CDS
AACAGTTTGACATGAGATGG+TGG 0.621739 1.2:-79582846 MS.gene060284:CDS
CTGGTTGCTTCCCCTAAGAG+GGG 0.625137 1.2:-79583939 MS.gene060284:CDS
GGAGTAACACCTGAGTCTGA+TGG 0.629153 1.2:-79583726 MS.gene060284:CDS
ACTGTCGGAACGTTGAGGTG+TGG 0.629360 1.2:+79582711 None:intergenic
CTGCTCCTACCATCAGACTC+AGG 0.632022 1.2:+79583717 None:intergenic
AAAGAAAGAGTTCACACTGT+CGG 0.634665 1.2:+79582696 None:intergenic
ACAACAAAGCATTCATGGGA+TGG 0.635224 1.2:-79581158 MS.gene060284:intron
TCTTCTGAATAGGTATGATG+AGG 0.638772 1.2:-79582614 MS.gene060284:CDS
ATCAATGAAGAGCATCACAC+GGG 0.644996 1.2:-79583969 MS.gene060284:CDS
ATGAACAGTTTGACATGAGA+TGG 0.648940 1.2:-79582849 MS.gene060284:CDS
TGGATGTCAATCTAGGACAG+AGG 0.649330 1.2:-79582458 MS.gene060284:CDS
TATAGTTCAAGATTACGAGA+AGG 0.655112 1.2:-79582410 MS.gene060284:CDS
ACATAGTAACCATCATTAGG+TGG 0.656679 1.2:+79581395 None:intergenic
TTCACACTGTCGGAACGTTG+AGG 0.659741 1.2:+79582706 None:intergenic
CTATTCTATAGATTTAAACG+AGG 0.660746 1.2:-79583310 MS.gene060284:CDS
AATGAAGAGCATCACACGGG+TGG 0.665222 1.2:-79583966 MS.gene060284:CDS
ACGAGTTATCAGTTTGACAG+AGG 0.665307 1.2:-79583417 MS.gene060284:CDS
TATCAATGAAGAGCATCACA+CGG 0.672857 1.2:-79583970 MS.gene060284:CDS
TAACACCTGAGTCTGATGGT+AGG 0.675623 1.2:-79583722 MS.gene060284:CDS
CTGTAGCAGATAGGACACAA+AGG 0.688770 1.2:-79582204 MS.gene060284:CDS
TTGGAACGAGTTGAGCTCAG+AGG 0.703393 1.2:-79582368 MS.gene060284:CDS
ACAGTTTGACATGAGATGGT+GGG 0.706939 1.2:-79582845 MS.gene060284:CDS
AAGACATCTCCCATGTACGT+CGG 0.734961 1.2:+79582748 None:intergenic
GAAATGTCTAGACAATCTGG+TGG 0.763154 1.2:-79583471 MS.gene060284:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTATTAATTATAA+AGG - chr1.2:79583529-79583548 MS.gene060284:CDS 0.0%
!!! AACGTTTAAGAAATATATTT+TGG - chr1.2:79581543-79581562 MS.gene060284:CDS 15.0%
!!! ACGTTTAAGAAATATATTTT+GGG - chr1.2:79581544-79581563 MS.gene060284:CDS 15.0%
!!! GAACATTTTTGAATTTATAA+AGG - chr1.2:79581205-79581224 MS.gene060284:CDS 15.0%
!! AAAACATTGTAATCATTTGA+TGG + chr1.2:79583334-79583353 None:intergenic 20.0%
!! AAAATGCAATTCTTAAACTT+TGG + chr1.2:79581944-79581963 None:intergenic 20.0%
!! AGAAGATTATATTCATGATT+AGG + chr1.2:79583492-79583511 None:intergenic 20.0%
!! CTAATAAGTAACTAAGTATA+CGG + chr1.2:79583859-79583878 None:intergenic 20.0%
!! TAATTTCCCAATAATTTCAT+AGG + chr1.2:79583706-79583725 None:intergenic 20.0%
!! TACTTTCCTATGAAATTATT+GGG - chr1.2:79583697-79583716 MS.gene060284:CDS 20.0%
!! TTAGATTATACAAATAAGCA+TGG - chr1.2:79583101-79583120 MS.gene060284:intron 20.0%
!!! TGCTTAATAGATTGTAATTT+TGG - chr1.2:79583376-79583395 MS.gene060284:CDS 20.0%
! ACATTTCAACATACATCTTT+CGG + chr1.2:79581343-79581362 None:intergenic 25.0%
! AGTACCATAATATCCATTAA+GGG + chr1.2:79583273-79583292 None:intergenic 25.0%
! ATAGGTTAATTCTTCTGAAT+AGG - chr1.2:79582203-79582222 MS.gene060284:CDS 25.0%
! ATCTATAGAATAGAAGAAGT+TGG + chr1.2:79581510-79581529 None:intergenic 25.0%
! ATTGATATTCATATCGTTGT+AGG - chr1.2:79583600-79583619 MS.gene060284:CDS 25.0%
! CTATTCTATAGATTTAAACG+AGG - chr1.2:79581517-79581536 MS.gene060284:intron 25.0%
! GTACTTTCCTATGAAATTAT+TGG - chr1.2:79583696-79583715 MS.gene060284:CDS 25.0%
! GTATTTCAAGCATATTCAAA+AGG - chr1.2:79581478-79581497 MS.gene060284:intron 25.0%
! TACTTATTAGCATTTGAACT+TGG - chr1.2:79583869-79583888 MS.gene060284:CDS 25.0%
! TCTATAGAATAGAAGAAGTT+GGG + chr1.2:79581509-79581528 None:intergenic 25.0%
! TTAACATAGTAACCATCATT+AGG + chr1.2:79583438-79583457 None:intergenic 25.0%
! TTGATATTCATATCGTTGTA+GGG - chr1.2:79583601-79583620 MS.gene060284:CDS 25.0%
!! TGAATAGAATAATTTGTGCT+TGG - chr1.2:79583897-79583916 MS.gene060284:CDS 25.0%
!! TTTCTAGCATTTAAAAGATC+AGG - chr1.2:79582960-79582979 MS.gene060284:intron 25.0%
AAGAGTTTGTGAAACAGTAT+AGG - chr1.2:79582185-79582204 MS.gene060284:CDS 30.0%
ACTGTTTCACAAACTCTTTA+AGG + chr1.2:79582183-79582202 None:intergenic 30.0%
AGCAACATTATAACTCTCTT+CGG + chr1.2:79582722-79582741 None:intergenic 30.0%
ATAGAAATGCAATTCTCAAG+AGG + chr1.2:79583136-79583155 None:intergenic 30.0%
CAGATCATGAATGAAAAAAG+AGG + chr1.2:79583079-79583098 None:intergenic 30.0%
CATTTCAACATACATCTTTC+GGG + chr1.2:79581342-79581361 None:intergenic 30.0%
CTCATTATATCATGAAGAGA+TGG - chr1.2:79582575-79582594 MS.gene060284:CDS 30.0%
CTCTTCATGATATAATGAGA+TGG + chr1.2:79582574-79582593 None:intergenic 30.0%
CTGTTTCACAAACTCTTTAA+GGG + chr1.2:79582182-79582201 None:intergenic 30.0%
GAGTACCATAATATCCATTA+AGG + chr1.2:79583274-79583293 None:intergenic 30.0%
GTAAATAACTCTAACGACAA+TGG - chr1.2:79582781-79582800 MS.gene060284:CDS 30.0%
TATAGTTCAAGATTACGAGA+AGG - chr1.2:79582417-79582436 MS.gene060284:CDS 30.0%
TGATACGAGAATCACTTTAT+AGG - chr1.2:79582987-79583006 MS.gene060284:intron 30.0%
TGATCAGTGACTATAACTTT+GGG + chr1.2:79581791-79581810 None:intergenic 30.0%
TTGATCAGTGACTATAACTT+TGG + chr1.2:79581792-79581811 None:intergenic 30.0%
TTGCACATAACCTTAATTGT+AGG - chr1.2:79583934-79583953 MS.gene060284:CDS 30.0%
TTTCAAGCATATTCAAAAGG+AGG - chr1.2:79581481-79581500 MS.gene060284:intron 30.0%
! AAATTCCAAGTTGAAGTGTT+GGG - chr1.2:79582340-79582359 MS.gene060284:CDS 30.0%
! ATCACAAAAGACAGATTTTC+AGG + chr1.2:79581899-79581918 None:intergenic 30.0%
! ATTGCCCTTAATGGATATTA+TGG - chr1.2:79583266-79583285 MS.gene060284:intron 30.0%
! CTTTTCTCTTTGTCACATAT+TGG - chr1.2:79581865-79581884 MS.gene060284:intron 30.0%
! TGTCGATTGTTCGAATATAA+AGG - chr1.2:79582493-79582512 MS.gene060284:CDS 30.0%
!! ATACAAGTTTGCTAACACTA+TGG - chr1.2:79583750-79583769 MS.gene060284:CDS 30.0%
!! TACAAGTTTGCTAACACTAT+GGG - chr1.2:79583751-79583770 MS.gene060284:CDS 30.0%
!!! AGAATTGCATTTTTAAGTCC+TGG - chr1.2:79581951-79581970 MS.gene060284:CDS 30.0%
!!! ATGAAGAGTTTTTGGTAACT+TGG - chr1.2:79582440-79582459 MS.gene060284:CDS 30.0%
!!! CTTATCGTTGCTTTTTATGT+AGG + chr1.2:79581630-79581649 None:intergenic 30.0%
!!! CTTTTAGGATAATCTTAGCT+CGG - chr1.2:79583238-79583257 MS.gene060284:intron 30.0%
AAAAGCAATGACGTACACTT+GGG + chr1.2:79581850-79581869 None:intergenic 35.0%
AAAATGTTCCATTTCCCATC+TGG + chr1.2:79581194-79581213 None:intergenic 35.0%
AAACTGCATCATTAAAGCTG+AGG + chr1.2:79581595-79581614 None:intergenic 35.0%
AAAGAAAGAGTTCACACTGT+CGG + chr1.2:79582134-79582153 None:intergenic 35.0%
AAATGCAATTCTCAAGAGGA+TGG + chr1.2:79583132-79583151 None:intergenic 35.0%
AAATGTTCCATTTCCCATCT+GGG + chr1.2:79581193-79581212 None:intergenic 35.0%
AATGCACATCCAAGCAATAT+AGG + chr1.2:79581695-79581714 None:intergenic 35.0%
ACATAGTAACCATCATTAGG+TGG + chr1.2:79583435-79583454 None:intergenic 35.0%
ACATCCAAGCAATATAGGTT+GGG + chr1.2:79581690-79581709 None:intergenic 35.0%
AGTGAAACCAAACATCATCA+TGG + chr1.2:79582030-79582049 None:intergenic 35.0%
ATGAACAGTTTGACATGAGA+TGG - chr1.2:79581978-79581997 MS.gene060284:CDS 35.0%
CAAAACATTGGGTCAATCAT+GGG - chr1.2:79581383-79581402 MS.gene060284:CDS 35.0%
CACACATCATTATAACGTTG+AGG + chr1.2:79582661-79582680 None:intergenic 35.0%
CTATATCCAAAAGTGGTTGT+CGG + chr1.2:79583811-79583830 None:intergenic 35.0%
CTCAGTAACCAAACAAAAGT+GGG + chr1.2:79581737-79581756 None:intergenic 35.0%
CTTCAAAACCAAGTAAGAAG+AGG - chr1.2:79582866-79582885 MS.gene060284:CDS 35.0%
GAACACAACTAGGAAAAGAA+AGG - chr1.2:79582888-79582907 MS.gene060284:CDS 35.0%
GACCAAAGATGCCAAAATTA+GGG - chr1.2:79582597-79582616 MS.gene060284:CDS 35.0%
GCATGTACAGTTGAACTTAA+TGG - chr1.2:79583407-79583426 MS.gene060284:CDS 35.0%
GTTGAAATGTCTAGACAATC+TGG - chr1.2:79581353-79581372 MS.gene060284:intron 35.0%
GTTTCAAATTCAATGCCGTT+AGG + chr1.2:79580951-79580970 None:intergenic 35.0%
TAAGGTTATGTGCAAACAGA+CGG + chr1.2:79583929-79583948 None:intergenic 35.0%
TATATTGCTTGGATGTGCAT+TGG - chr1.2:79581694-79581713 MS.gene060284:intron 35.0%
TCAAAACATTGGGTCAATCA+TGG - chr1.2:79581382-79581401 MS.gene060284:CDS 35.0%
TCTTCTGAATAGGTATGATG+AGG - chr1.2:79582213-79582232 MS.gene060284:CDS 35.0%
TTCTTCAATTGCTTCCTTCA+AGG + chr1.2:79581822-79581841 None:intergenic 35.0%
! ACATGTGCTTTCGTTCTTTT+AGG - chr1.2:79583223-79583242 MS.gene060284:intron 35.0%
! CAAGAGTATGCCAAATCTAT+GGG - chr1.2:79580996-79581015 MS.gene060284:intron 35.0%
! GAAATTCCAAGTTGAAGTGT+TGG - chr1.2:79582339-79582358 MS.gene060284:CDS 35.0%
! GAACACAACAAAGCATTCAT+GGG - chr1.2:79583665-79583684 MS.gene060284:CDS 35.0%
! GCATATCATTTTCGGATTCA+TGG - chr1.2:79581257-79581276 MS.gene060284:intron 35.0%
! TCAAGAGTATGCCAAATCTA+TGG - chr1.2:79580995-79581014 MS.gene060284:intron 35.0%
! TCATGAACTTTTACCAGCTT+TGG - chr1.2:79581235-79581254 MS.gene060284:intron 35.0%
! TTGAACTCCATGATGATGTT+TGG - chr1.2:79582020-79582039 MS.gene060284:CDS 35.0%
!! ATTTGTTTTTCCCAAGGTGA+CGG + chr1.2:79582289-79582308 None:intergenic 35.0%
!! CAGCTTTGGCATATCATTTT+CGG - chr1.2:79581249-79581268 MS.gene060284:intron 35.0%
!! GCTTACGTGTTAAGTTGTTT+TGG - chr1.2:79582936-79582955 MS.gene060284:intron 35.0%
!! GTTGACATTTGTTTTTCCCA+AGG + chr1.2:79582295-79582314 None:intergenic 35.0%
!! TATCAATGAAGAGCATCACA+CGG - chr1.2:79580857-79580876 MS.gene060284:CDS 35.0%
!! TTCCCTAATTTTGGCATCTT+TGG + chr1.2:79582602-79582621 None:intergenic 35.0%
!!! CTTACTTGGTTTTGAAGCAA+GGG + chr1.2:79582863-79582882 None:intergenic 35.0%
!!! TCTGCTGTTTTTAATGGAAG+TGG + chr1.2:79581027-79581046 None:intergenic 35.0%
!!! TCTTACTTGGTTTTGAAGCA+AGG + chr1.2:79582864-79582883 None:intergenic 35.0%
!!! TGATCGTCTGCTGTTTTTAA+TGG + chr1.2:79581033-79581052 None:intergenic 35.0%
AACAGTTTGACATGAGATGG+TGG - chr1.2:79581981-79582000 MS.gene060284:CDS 40.0%
ACAGTTTGACATGAGATGGT+GGG - chr1.2:79581982-79582001 MS.gene060284:CDS 40.0%
ACGAGTTATCAGTTTGACAG+AGG - chr1.2:79581410-79581429 MS.gene060284:CDS 40.0%
ACGTGAAGAAAAACCCAGAT+GGG - chr1.2:79581177-79581196 MS.gene060284:CDS 40.0%
ACTCCAACAAAAGGAGCAAA+AGG + chr1.2:79581656-79581675 None:intergenic 40.0%
ACTTAAATCTCCGTCACCTT+GGG - chr1.2:79582276-79582295 MS.gene060284:CDS 40.0%
AGAAAAACCCAGATGGGAAA+TGG - chr1.2:79581183-79581202 MS.gene060284:CDS 40.0%
AGGAAAAGAAAGGTCAGTTC+TGG - chr1.2:79582898-79582917 MS.gene060284:CDS 40.0%
AGTATTGCGTTGAGTGAAGA+AGG - chr1.2:79582688-79582707 MS.gene060284:CDS 40.0%
AGTGGTGAATCCCATAGATT+TGG + chr1.2:79581009-79581028 None:intergenic 40.0%
CACATCCAAGCAATATAGGT+TGG + chr1.2:79581691-79581710 None:intergenic 40.0%
CATGATTAGGACAACTTACC+AGG + chr1.2:79583479-79583498 None:intergenic 40.0%
CATGTCATGAACAAACCTGA+AGG + chr1.2:79583834-79583853 None:intergenic 40.0%
CCTCAGTAACCAAACAAAAG+TGG + chr1.2:79581738-79581757 None:intergenic 40.0%
CGAAAATGATATGCCAAAGC+TGG + chr1.2:79581251-79581270 None:intergenic 40.0%
CGAGTTATCAGTTTGACAGA+GGG - chr1.2:79581411-79581430 MS.gene060284:CDS 40.0%
CTGAAGGCTATATCCAAAAG+TGG + chr1.2:79583818-79583837 None:intergenic 40.0%
GAAAAGCAATGACGTACACT+TGG + chr1.2:79581851-79581870 None:intergenic 40.0%
GAAATGTCTAGACAATCTGG+TGG - chr1.2:79581356-79581375 MS.gene060284:intron 40.0%
GGACACAAAGGATACAAACT+AGG - chr1.2:79582635-79582654 MS.gene060284:CDS 40.0%
GGACCAAAGATGCCAAAATT+AGG - chr1.2:79582596-79582615 MS.gene060284:CDS 40.0%
GTAAGAAGAGGAACACAACT+AGG - chr1.2:79582878-79582897 MS.gene060284:CDS 40.0%
GTAGGGTCCATTGAATTCTA+TGG - chr1.2:79583618-79583637 MS.gene060284:CDS 40.0%
GTGTTCCAAAATACCCATCA+TGG + chr1.2:79583651-79583670 None:intergenic 40.0%
GTTAATCAACACAGCATGCA+AGG - chr1.2:79583453-79583472 MS.gene060284:CDS 40.0%
GTTGTGTTCCTCTTCTTACT+TGG + chr1.2:79582877-79582896 None:intergenic 40.0%
TCAAATTCAATGCCGTTAGG+TGG + chr1.2:79580948-79580967 None:intergenic 40.0%
TCAGGCTCATCCTACAATTA+AGG + chr1.2:79583947-79583966 None:intergenic 40.0%
TGATCAAGACAAAGCCTTGA+AGG - chr1.2:79581805-79581824 MS.gene060284:CDS 40.0%
TGATGGTTCACTCCAACAAA+AGG + chr1.2:79581665-79581684 None:intergenic 40.0%
TTAATGGAGCCACCTAATGA+TGG - chr1.2:79583423-79583442 MS.gene060284:CDS 40.0%
TTCACTCATTGTACGAAGAC+CGG - chr1.2:79582044-79582063 MS.gene060284:CDS 40.0%
TTGTTTGGTTACTGAGGACA+TGG - chr1.2:79581741-79581760 MS.gene060284:intron 40.0%
! AAACACAAACCATTTGCTGC+AGG + chr1.2:79583056-79583075 None:intergenic 40.0%
! AAAGGTCAGTTCTGGTAATG+TGG - chr1.2:79582906-79582925 MS.gene060284:intron 40.0%
! AACACAAACCATTTGCTGCA+GGG + chr1.2:79583055-79583074 None:intergenic 40.0%
! ACAACAAAGCATTCATGGGA+TGG - chr1.2:79583669-79583688 MS.gene060284:CDS 40.0%
! CACTTTTGGATATAGCCTTC+AGG - chr1.2:79583816-79583835 MS.gene060284:CDS 40.0%
! CGAGAAGGATGAAGAGTTTT+TGG - chr1.2:79582432-79582451 MS.gene060284:CDS 40.0%
! GGAACACAACAAAGCATTCA+TGG - chr1.2:79583664-79583683 MS.gene060284:CDS 40.0%
! TGCTACAGGTTCCCTAATTT+TGG + chr1.2:79582611-79582630 None:intergenic 40.0%
! TTGCCTTTTGCTCCTTTTGT+TGG - chr1.2:79581650-79581669 MS.gene060284:intron 40.0%
!! ACTATGGGTTGGTTCATGTA+GGG - chr1.2:79583766-79583785 MS.gene060284:CDS 40.0%
!! AGACTAAGCCCACTTTTGTT+TGG - chr1.2:79581726-79581745 MS.gene060284:intron 40.0%
!! AGTTTGCTAACACTATGGGT+TGG - chr1.2:79583755-79583774 MS.gene060284:CDS 40.0%
!! ATCAATGAAGAGCATCACAC+GGG - chr1.2:79580858-79580877 MS.gene060284:CDS 40.0%
!! ATGGGAGATGTCTTTTTAGC+TGG - chr1.2:79582088-79582107 MS.gene060284:CDS 40.0%
!! CCACTTTTGTTTGGTTACTG+AGG - chr1.2:79581735-79581754 MS.gene060284:intron 40.0%
AACGACAATGGTGCAGAAAC+TGG - chr1.2:79582793-79582812 MS.gene060284:CDS 45.0%
AAGAAAGCTATGCCCCTCTT+AGG + chr1.2:79580903-79580922 None:intergenic 45.0%
AAGACATCTCCCATGTACGT+CGG + chr1.2:79582082-79582101 None:intergenic 45.0%
AGAAAGCTATGCCCCTCTTA+GGG + chr1.2:79580902-79580921 None:intergenic 45.0%
ATACCTAGAGCACGCGAATT+TGG + chr1.2:79581081-79581100 None:intergenic 45.0%
CACGTGAAGAAAAACCCAGA+TGG - chr1.2:79581176-79581195 MS.gene060284:CDS 45.0%
CACTCCCAACCTATATTGCT+TGG - chr1.2:79581683-79581702 MS.gene060284:intron 45.0%
CACTTAAATCTCCGTCACCT+TGG - chr1.2:79582275-79582294 MS.gene060284:CDS 45.0%
CCAAAATACCCATCATGGCT+CGG + chr1.2:79583646-79583665 None:intergenic 45.0%
CTACACCCAACACTTCAACT+TGG + chr1.2:79582348-79582367 None:intergenic 45.0%
CTCGGAGCCATAGAATTCAA+TGG + chr1.2:79583628-79583647 None:intergenic 45.0%
CTGGTGGCTGTCAAAACATT+GGG - chr1.2:79581372-79581391 MS.gene060284:CDS 45.0%
CTGTAGCAGATAGGACACAA+AGG - chr1.2:79582623-79582642 MS.gene060284:CDS 45.0%
CTTTGTGTCCTATCTGCTAC+AGG + chr1.2:79582625-79582644 None:intergenic 45.0%
GAACTGTTGCTGTGAAAGTG+TGG + chr1.2:79583971-79583990 None:intergenic 45.0%
GGGGCATAGCTTTCTTTGAA+GGG - chr1.2:79580907-79580926 MS.gene060284:intron 45.0%
GTACGAAGACCGGAAAAAGT+GGG - chr1.2:79582054-79582073 MS.gene060284:CDS 45.0%
GTCAAACTGTTCATCTGTCC+AGG + chr1.2:79581972-79581991 None:intergenic 45.0%
GTGTAGCTGGATGTCAATCT+AGG - chr1.2:79582362-79582381 MS.gene060284:CDS 45.0%
GTTACATGAAGCGCATGCTA+TGG + chr1.2:79583205-79583224 None:intergenic 45.0%
TAACACCTGAGTCTGATGGT+AGG - chr1.2:79581105-79581124 MS.gene060284:intron 45.0%
TCAAGATACCCTGCAGCAAA+TGG - chr1.2:79583044-79583063 MS.gene060284:intron 45.0%
TCGGATGCAATTGCCCTTAA+TGG - chr1.2:79583257-79583276 MS.gene060284:intron 45.0%
TCTGGTGGCTGTCAAAACAT+TGG - chr1.2:79581371-79581390 MS.gene060284:CDS 45.0%
TGTACGAAGACCGGAAAAAG+TGG - chr1.2:79582053-79582072 MS.gene060284:CDS 45.0%
TTAGGGAACCTGTAGCAGAT+AGG - chr1.2:79582614-79582633 MS.gene060284:CDS 45.0%
TTGAGTGTTCTCCAACGTTG+CGG - chr1.2:79582535-79582554 MS.gene060284:CDS 45.0%
! AAATTCGCGTGCTCTAGGTA+TGG - chr1.2:79581080-79581099 MS.gene060284:intron 45.0%
! ACGGATTTTGAGCCACCTAA+CGG - chr1.2:79580933-79580952 MS.gene060284:intron 45.0%
! AGCTTTCTTTGAAGGGGACA+CGG - chr1.2:79580914-79580933 MS.gene060284:intron 45.0%
! AGGGGCATAGCTTTCTTTGA+AGG - chr1.2:79580906-79580925 MS.gene060284:intron 45.0%
! GCAATATAGGTTGGGAGTGA+TGG + chr1.2:79581682-79581701 None:intergenic 45.0%
! GGGCATAGCTTTCTTTGAAG+GGG - chr1.2:79580908-79580927 MS.gene060284:intron 45.0%
! TATCGTCCGACAACCACTTT+TGG - chr1.2:79583802-79583821 MS.gene060284:CDS 45.0%
! TGGATGTCAATCTAGGACAG+AGG - chr1.2:79582369-79582388 MS.gene060284:CDS 45.0%
! TGTCAATCTAGGACAGAGGT+TGG - chr1.2:79582373-79582392 MS.gene060284:CDS 45.0%
! TTGCTGTGAAAGTGTGGATC+AGG + chr1.2:79583965-79583984 None:intergenic 45.0%
!! CACTATGGGTTGGTTCATGT+AGG - chr1.2:79583765-79583784 MS.gene060284:CDS 45.0%
!! CAGTATCTGGCTTTGGATGA+GGG - chr1.2:79581434-79581453 MS.gene060284:intron 45.0%
ACTGGTTGCTTCCCCTAAGA+GGG - chr1.2:79580887-79580906 MS.gene060284:intron 50.0%
AGGACATGGCTTAGAGCGAT+GGG - chr1.2:79581755-79581774 MS.gene060284:intron 50.0%
ATGCCAAATTCGCGTGCTCT+AGG - chr1.2:79581075-79581094 MS.gene060284:intron 50.0%
CACTCAATGCGTGTCTGCAA+AGG + chr1.2:79582522-79582541 None:intergenic 50.0%
CACTTGAACAACCGCAACGT+TGG + chr1.2:79582549-79582568 None:intergenic 50.0%
CTACTGCTTGCATTGCATCG+AGG - chr1.2:79583168-79583187 MS.gene060284:intron 50.0%
CTCGATGCAATGCAAGCAGT+AGG + chr1.2:79583170-79583189 None:intergenic 50.0%
GAAAGCTATGCCCCTCTTAG+GGG + chr1.2:79580901-79580920 None:intergenic 50.0%
GGAGTAACACCTGAGTCTGA+TGG - chr1.2:79581101-79581120 MS.gene060284:intron 50.0%
GGTACTCAGCAGAATGTGCA+AGG - chr1.2:79583287-79583306 MS.gene060284:CDS 50.0%
GGTGCAGAAACTGGCAACAA+TGG - chr1.2:79582802-79582821 MS.gene060284:CDS 50.0%
GTTCATGTAGGGAGGGCAAT+TGG - chr1.2:79583777-79583796 MS.gene060284:CDS 50.0%
GTTTGACAGAGGGCAGTATC+TGG - chr1.2:79581421-79581440 MS.gene060284:CDS 50.0%
TCAGCAGAATGTGCAAGGAC+TGG - chr1.2:79583292-79583311 MS.gene060284:CDS 50.0%
TTCACACTGTCGGAACGTTG+AGG + chr1.2:79582124-79582143 None:intergenic 50.0%
! TCTAGGACAGAGGTTGGAGA+TGG - chr1.2:79582379-79582398 MS.gene060284:CDS 50.0%
! TTGGAACGAGTTGAGCTCAG+AGG - chr1.2:79582459-79582478 MS.gene060284:CDS 50.0%
!! AAAGTGGGTACCGACGTACA+TGG - chr1.2:79582069-79582088 MS.gene060284:CDS 50.0%
!! AAGTGGGTACCGACGTACAT+GGG - chr1.2:79582070-79582089 MS.gene060284:CDS 50.0%
!! AATGAAGAGCATCACACGGG+TGG - chr1.2:79580861-79580880 MS.gene060284:CDS 50.0%
!! ATGGGTTGGTTCATGTAGGG+AGG - chr1.2:79583769-79583788 MS.gene060284:CDS 50.0%
!! GCAGTATCTGGCTTTGGATG+AGG - chr1.2:79581433-79581452 MS.gene060284:intron 50.0%
!! GGTGACGGAGATTTAAGTGC+AGG + chr1.2:79582274-79582293 None:intergenic 50.0%
!! GTTGAAGTGTTGGGTGTAGC+TGG - chr1.2:79582349-79582368 MS.gene060284:CDS 50.0%
!! TCTTGAGCGTCGACAAGTAC+AGG + chr1.2:79583030-79583049 None:intergenic 50.0%
!! TGGCTTTGGATGAGGGAGAT+GGG - chr1.2:79581441-79581460 MS.gene060284:intron 50.0%
!! TGGGTTGGTTCATGTAGGGA+GGG - chr1.2:79583770-79583789 MS.gene060284:CDS 50.0%
!!! ACGTCGGTACCCACTTTTTC+CGG + chr1.2:79582066-79582085 None:intergenic 50.0%
!!! CCGAGCCATGATGGGTATTT+TGG - chr1.2:79583643-79583662 MS.gene060284:CDS 50.0%
ACATGGCTTAGAGCGATGGG+AGG - chr1.2:79581758-79581777 MS.gene060284:intron 55.0%
ACTGTCGGAACGTTGAGGTG+TGG + chr1.2:79582119-79582138 None:intergenic 55.0%
CATGGCTTAGAGCGATGGGA+GGG - chr1.2:79581759-79581778 MS.gene060284:intron 55.0%
CTATGGCTCCGAGCCATGAT+GGG - chr1.2:79583635-79583654 MS.gene060284:CDS 55.0%
CTGCTCCTACCATCAGACTC+AGG + chr1.2:79581113-79581132 None:intergenic 55.0%
CTGGTTGCTTCCCCTAAGAG+GGG - chr1.2:79580888-79580907 MS.gene060284:intron 55.0%
GAGGACATGGCTTAGAGCGA+TGG - chr1.2:79581754-79581773 MS.gene060284:intron 55.0%
GGGAGATGGGCAAGTTATGC+TGG - chr1.2:79581454-79581473 MS.gene060284:intron 55.0%
TCAACACAGCATGCAAGGCC+TGG - chr1.2:79583458-79583477 MS.gene060284:CDS 55.0%
TCTATGGCTCCGAGCCATGA+TGG - chr1.2:79583634-79583653 MS.gene060284:CDS 55.0%
! CACTGGTTGCTTCCCCTAAG+AGG - chr1.2:79580886-79580905 MS.gene060284:intron 55.0%
! CAGAGGGCAGTATCTGGCTT+TGG - chr1.2:79581427-79581446 MS.gene060284:intron 55.0%
!! CTGGCTTTGGATGAGGGAGA+TGG - chr1.2:79581440-79581459 MS.gene060284:intron 55.0%
GCATCACACGGGTGGTGCAC+TGG - chr1.2:79580869-79580888 MS.gene060284:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 79580846 79584003 79580846 ID=MS.gene060284
chr1.2 mRNA 79580846 79584003 79580846 ID=MS.gene060284.t1;Parent=MS.gene060284
chr1.2 exon 79583284 79584003 79583284 ID=MS.gene060284.t1.exon1;Parent=MS.gene060284.t1
chr1.2 CDS 79583284 79584003 79583284 ID=cds.MS.gene060284.t1;Parent=MS.gene060284.t1
chr1.2 exon 79581940 79582923 79581940 ID=MS.gene060284.t1.exon2;Parent=MS.gene060284.t1
chr1.2 CDS 79581940 79582923 79581940 ID=cds.MS.gene060284.t1;Parent=MS.gene060284.t1
chr1.2 exon 79581784 79581840 79581784 ID=MS.gene060284.t1.exon3;Parent=MS.gene060284.t1
chr1.2 CDS 79581784 79581840 79581784 ID=cds.MS.gene060284.t1;Parent=MS.gene060284.t1
chr1.2 exon 79581536 79581604 79581536 ID=MS.gene060284.t1.exon4;Parent=MS.gene060284.t1
chr1.2 CDS 79581536 79581604 79581536 ID=cds.MS.gene060284.t1;Parent=MS.gene060284.t1
chr1.2 exon 79581370 79581441 79581370 ID=MS.gene060284.t1.exon5;Parent=MS.gene060284.t1
chr1.2 CDS 79581370 79581441 79581370 ID=cds.MS.gene060284.t1;Parent=MS.gene060284.t1
chr1.2 exon 79581159 79581227 79581159 ID=MS.gene060284.t1.exon6;Parent=MS.gene060284.t1
chr1.2 CDS 79581159 79581227 79581159 ID=cds.MS.gene060284.t1;Parent=MS.gene060284.t1
chr1.2 exon 79581012 79581062 79581012 ID=MS.gene060284.t1.exon7;Parent=MS.gene060284.t1
chr1.2 CDS 79581012 79581062 79581012 ID=cds.MS.gene060284.t1;Parent=MS.gene060284.t1
chr1.2 exon 79580846 79580893 79580846 ID=MS.gene060284.t1.exon8;Parent=MS.gene060284.t1
chr1.2 CDS 79580846 79580893 79580846 ID=cds.MS.gene060284.t1;Parent=MS.gene060284.t1
Gene Sequence

>MS.gene060284

ATGGGTGACTCTATCAATGAAGAGCATCACACGGGTGGTGCACTGGTTGCTTCCCCTAAGAGGGGCATAGCTTTCTTTGAAGGGGACACGGATTTTGAGCCACCTAACGGCATTGAATTTGAAACTCATGAAGCAGCATATTCATTTTATCAAGAGTATGCCAAATCTATGGGATTCACCACTTCCATTAAAAACAGCAGACGATCAAAGAAGACTAAAGAATTTATTGATGCCAAATTCGCGTGCTCTAGGTATGGAGTAACACCTGAGTCTGATGGTAGGAGCAGTCGAAGATCGAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCACGTGAAGAAAAACCCAGATGGGAAATGGAACATTTTTGAATTTATAAAGGATCATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATGGAAACGTGAAGTTAGCTGACAAGAATAATATTGATATCTTGCATGCTGTTAGTGAACGTACCCGAAAGATGTATGTTGAAATGTCTAGACAATCTGGTGGCTGTCAAAACATTGGGTCAATCATGGGTGATACGAGTTATCAGTTTGACAGAGGGCAGTATCTGGCTTTGGATGAGGGAGATGGGCAAGTTATGCTGGAGTATTTCAAGCATATTCAAAAGGAGGATCCCAACTTCTTCTATTCTATAGATTTAAACGAGGAACAACGTTTAAGAAATATATTTTGGGTTGATTCAAAAAGCATCGATGATTACCTCAGCTTTAATGATGCAGTTTCATTTGATACTTCCTACATAAAAAGCAACGATAAGTTGCCTTTTGCTCCTTTTGTTGGAGTGAACCATCACTCCCAACCTATATTGCTTGGATGTGCATTGGTTGCTGATGAGACTAAGCCCACTTTTGTTTGGTTACTGAGGACATGGCTTAGAGCGATGGGAGGGCAAGCTCCCAAAGTTATAGTCACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTCTTCCCAAGTGTACGTCATTGCTTTTCTCTTTGTCACATATTGGAAAAGATACCTGAAAATCTGTCTTTTGTGATAAAACAGTACAAGAACTTCTTGCCAAAGTTTAAGAATTGCATTTTTAAGTCCTGGACAGATGAACAGTTTGACATGAGATGGTGGGAAATAGTGACTATATTTGAACTCCATGATGATGTTTGGTTTCACTCATTGTACGAAGACCGGAAAAAGTGGGTACCGACGTACATGGGAGATGTCTTTTTAGCTGGAATGTCCACACCTCAACGTTCCGACAGTGTGAACTCTTTCTTTGACAAATACATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAACAGTATAGGTTAATTCTTCTGAATAGGTATGATGAGGAAGAAATCGCAGATTTTGATACATTGCACAAACAACCTGCACTTAAATCTCCGTCACCTTGGGAAAAACAAATGTCAACAATTTATACACATGCAATATTTAAGAAATTCCAAGTTGAAGTGTTGGGTGTAGCTGGATGTCAATCTAGGACAGAGGTTGGAGATGGAACTGTTGTGAGATATATAGTTCAAGATTACGAGAAGGATGAAGAGTTTTTGGTAACTTGGAACGAGTTGAGCTCAGAGGTCTCTTGCTTCTGTCGATTGTTCGAATATAAAGGTTTCCTTTGCAGACACGCATTGAGTGTTCTCCAACGTTGCGGTTGTTCAAGTGTTCCATCTCATTATATCATGAAGAGATGGACCAAAGATGCCAAAATTAGGGAACCTGTAGCAGATAGGACACAAAGGATACAAACTAGGCCTCAACGTTATAATGATGTGTGCAAACGAAGTATTGCGTTGAGTGAAGAAGGATCATCATCCGAAGAGAGTTATAATGTTGCTTTGCGCGCGCTTGTTGATGCTTTGAAGAACTGTGTACTTGTAAATAACTCTAACGACAATGGTGCAGAAACTGGCAACAATGGTTACAGTCTTCGCGAAGCAGAAGAATATCAGAGTACCCTTGCTTCAAAACCAAGTAAGAAGAGGAACACAACTAGGAAAAGAAAGGTCAGTTCTGGTAATGTGGTTTTTGTGCTTACGTGTTAAGTTGTTTTGGCTTTCTAGCATTTAAAAGATCAGGAAATTGATACGAGAATCACTTTATAGGTGCAACAAGAGCAGAGTCCTGTACTTGTCGACGCTCAAGATACCCTGCAGCAAATGGTTTGTGTTTCCTCTTTTTTCATTCATGATCTGTTTTAGATTATACAAATAAGCATGGTACATCCATCCTCTTGAGAATTGCATTTCTATTTTCATGAATTCCTACTGCTTGCATTGCATCGAGGCTGAAAGAGATCCATAGCATGCGCTTCATGTAACATGTGCTTTCGTTCTTTTAGGATAATCTTAGCTCGGATGCAATTGCCCTTAATGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGGTAAATTTACATGTTAACCATCAAATGATTACAATGTTTTGTATTTTAAGAACTAAAAGTAATGCTTAATAGATTGTAATTTTGGTTTCTGTAGCATGTACAGTTGAACTTAATGGAGCCACCTAATGATGGTTACTATGTTAATCAACACAGCATGCAAGGCCTGGTAAGTTGTCCTAATCATGAATATAATCTTCTGATACGATTATCTTATATAATTAATTATTAATTATAAAGGAATAAGATTATTTATTAATTGTATTTCAAAAAAAAAATTATTTATTAAATTGATATTCATATCGTTGTAGGGTCCATTGAATTCTATGGCTCCGAGCCATGATGGGTATTTTGGAACACAACAAAGCATTCATGGGATGGTAGAGTACTTTCCTATGAAATTATTGGGAAATTATATTAATTAACATTAATTAATATGATACAAGTTTGCTAACACTATGGGTTGGTTCATGTAGGGAGGGCAATTGGAGTATCGTCCGACAACCACTTTTGGATATAGCCTTCAGGTTTGTTCATGACATGTACCGTATACTTAGTTACTTATTAGCATTTGAACTTGGAGATTTGAATAGAATAATTTGTGCTTGGTTTTCACCGTCTGTTTGCACATAACCTTAATTGTAGGATGAGCCTGATCCACACTTTCACAGCAACAGTTCAAGAAATACTTAG
Protein sequence

>MS.gene060284.t1

MGDSINEEHHTGGALVASPKRGIAFFEGDTDFEPPNGIEFETHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGRSSRRSSVKKTDCKACMHVKKNPDGKWNIFEFIKDHNHELLPALAYHFRIHGNVKLADKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSIMGDTSYQFDRGQYLALDEGDGQVMLEYFKHIQKEDPNFFYSIDLNEEQRLRNIFWYKNFLPKFKNCIFKSWTDEQFDMRWWEIVTIFELHDDVWFHSLYEDRKKWVPTYMGDVFLAGMSTPQRSDSVNSFFDKYIHKKITLKEFVKQYRLILLNRYDEEEIADFDTLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRTEVGDGTVVRYIVQDYEKDEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKIREPVADRTQRIQTRPQRYNDVCKRSIALSEEGSSSEESYNVALRALVDALKNCVLVNNSNDNGAETGNNGYSLREAEEYQSTLASKPSKKRNTTRKRKVQQEQSPVLVDAQDTLQQMDNLSSDAIALNGYYGTQQNVQGLHVQLNLMEPPNDGYYVNQHSMQGLGPLNSMAPSHDGYFGTQQSIHGMGGQLEYRPTTTFGYSLQDEPDPHFHSNSSRNT