AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91311


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91311.t1 MTR_1g106200 95.525 581 25 1 1 580 1 581 0.0 1157
MS.gene91311.t1 MTR_1g106200 90.017 581 24 2 1 580 7 554 0.0 1074
MS.gene91311.t1 MTR_1g106910 75.000 580 145 0 1 580 1 580 0.0 916
MS.gene91311.t1 MTR_1g106790 73.448 580 153 1 1 580 2 580 0.0 899
MS.gene91311.t1 MTR_1g106770 74.128 545 141 0 36 580 2 546 0.0 876
MS.gene91311.t1 MTR_7g024420 50.188 532 261 3 22 553 13 540 0.0 553
MS.gene91311.t1 MTR_4g074070 48.155 542 277 3 12 553 3 540 0.0 538
MS.gene91311.t1 MTR_5g049180 47.664 535 276 3 18 552 9 539 0.0 530
MS.gene91311.t1 MTR_3g117800 36.972 568 316 10 18 578 1 533 5.49e-116 355
MS.gene91311.t1 MTR_3g117800 39.958 478 270 7 108 578 15 482 1.28e-112 345
MS.gene91311.t1 MTR_3g117800 40.674 445 250 5 139 578 17 452 1.80e-109 335
MS.gene91311.t1 MTR_4g121520 54.887 266 67 3 315 580 222 434 1.18e-85 273
MS.gene91311.t1 MTR_3g103610 29.661 472 296 12 44 489 192 653 9.46e-59 209
MS.gene91311.t1 MTR_1g017020 27.641 568 361 15 44 578 353 903 2.05e-56 204
MS.gene91311.t1 MTR_1463s0010 40.310 129 31 4 381 509 1 83 1.11e-16 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91311.t1 AT4G33840 51.292 542 257 5 27 565 21 558 0.0 564
MS.gene91311.t1 AT4G33830 49.074 540 267 6 29 565 24 558 1.68e-180 522
MS.gene91311.t1 AT4G33860 50.379 528 255 5 29 553 23 546 7.72e-180 520
MS.gene91311.t1 AT4G33820 46.207 580 276 8 9 574 6 563 5.76e-177 513
MS.gene91311.t1 AT4G33810 45.833 576 279 8 8 574 11 562 2.40e-168 491
MS.gene91311.t1 AT4G33810 45.833 576 279 8 8 574 11 562 2.40e-168 491
MS.gene91311.t1 AT4G33810 45.833 576 279 8 8 574 11 562 2.40e-168 491
MS.gene91311.t1 AT4G33810 47.514 543 256 7 40 574 1 522 2.01e-166 484
MS.gene91311.t1 AT4G33810 47.514 543 256 7 40 574 1 522 2.01e-166 484
MS.gene91311.t1 AT2G14690 44.946 554 259 10 31 567 32 556 6.57e-162 474
MS.gene91311.t1 AT4G38650 37.563 591 327 13 1 579 1 561 1.47e-125 380
MS.gene91311.t1 AT4G38300 44.015 259 131 4 201 459 10 254 1.40e-71 231
MS.gene91311.t1 AT1G10050 28.862 589 361 16 32 578 523 1095 1.05e-59 215
MS.gene91311.t1 AT1G10050 28.862 589 361 16 32 578 491 1063 1.49e-59 214
MS.gene91311.t1 AT1G10050 28.862 589 361 16 32 578 491 1063 1.49e-59 214
MS.gene91311.t1 AT1G58370 30.660 424 274 10 75 489 414 826 5.15e-58 209
MS.gene91311.t1 AT1G58370 30.660 424 274 10 75 489 442 854 7.70e-58 209
MS.gene91311.t1 AT4G08160 30.162 494 315 15 80 554 245 727 8.12e-57 204
MS.gene91311.t1 AT4G08160 31.754 422 262 12 80 484 245 657 5.48e-56 200

Find 104 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCAACCATTTACTAAAA+AGG 0.196675 1.3:-72946697 MS.gene91311:CDS
CGCGGCTTTGCGCAATTTAT+CGG 0.228371 1.3:+72945983 None:intergenic
ATAATCCAAGTGTGGAAATA+TGG 0.243112 1.3:-72946734 MS.gene91311:CDS
GTAATATTGGATTTCCAATA+TGG 0.244796 1.3:-72945602 MS.gene91311:CDS
GATAAATACTTAACCCATTC+AGG 0.250247 1.3:+72946008 None:intergenic
TTAGAATTTGCTAAAGATAA+TGG 0.267266 1.3:-72946080 MS.gene91311:CDS
CTGGCTTCTGTGAGCCATAT+TGG 0.278897 1.3:+72945588 None:intergenic
TATCCTCATAAAAGTGAAAA+TGG 0.296065 1.3:+72945886 None:intergenic
CCCTTTCAATGTTGTTGTCT+TGG 0.298203 1.3:+72946661 None:intergenic
GAATTGAATCTGTTGTTAAA+AGG 0.302891 1.3:-72945953 MS.gene91311:CDS
CTTGTCCAGTTGGAGTAGTT+TGG 0.315012 1.3:+72945320 None:intergenic
GCAAATTCTAACATTGCATC+TGG 0.318088 1.3:+72946092 None:intergenic
CTATCTGCTTTGGCTGTATA+AGG 0.325055 1.3:+72945262 None:intergenic
ATAGAGGGTTGGACAGTATC+TGG 0.325119 1.3:-72947552 MS.gene91311:CDS
TTGGCTGGCCACTTGCAAAA+TGG 0.329470 1.3:+72945661 None:intergenic
AGGGCTAGGCGTTCATTCTT+TGG 0.333367 1.3:-72947771 MS.gene91311:CDS
AGGAATCAATATACCTGATT+TGG 0.339675 1.3:+72945552 None:intergenic
ACAAAGGCAGATTTCCCATT+TGG 0.372177 1.3:-72946254 MS.gene91311:CDS
CAAGGGATTATAATGTTTGC+TGG 0.384553 1.3:-72945391 MS.gene91311:CDS
GACCTCATGTAAGCAAGATT+TGG 0.386824 1.3:+72945642 None:intergenic
ATGGCTCACAGAAGCCAGTT+TGG 0.392362 1.3:-72945583 MS.gene91311:CDS
ATCTTGACACAAACCATTCC+TGG 0.399462 1.3:+72946192 None:intergenic
AATTCCTCTACTATCTGCTT+TGG 0.405314 1.3:+72945252 None:intergenic
TATAGTACAGAGAAAATTCC+AGG 0.407018 1.3:-72946134 MS.gene91311:CDS
TCTGTTGTATTTAAAACAAA+TGG 0.411591 1.3:-72947239 MS.gene91311:CDS
GCGGCTTTGCGCAATTTATC+GGG 0.413681 1.3:+72945984 None:intergenic
ATTATAATCCCTTGAACTGC+TGG 0.416207 1.3:+72945400 None:intergenic
TCTTTCCTTCTACTTATCTC+AGG 0.416467 1.3:-72947868 MS.gene91311:intron
GGACAATTTGATTCTTGAAT+GGG 0.428361 1.3:-72945293 MS.gene91311:CDS
AATTTCCAAACTACTCCAAC+TGG 0.432243 1.3:-72945325 MS.gene91311:CDS
GAACCTCAGAGAGCACAATA+TGG 0.433972 1.3:-72947612 MS.gene91311:CDS
CTTGAGGAGATTATGCAATC+TGG 0.434202 1.3:-72945723 MS.gene91311:CDS
TATAATACTATTGAATATAG+TGG 0.435039 1.3:-72945783 MS.gene91311:CDS
TGGACAATTTGATTCTTGAA+TGG 0.435532 1.3:-72945294 MS.gene91311:CDS
AGAAACCTGAGATAAGTAGA+AGG 0.437755 1.3:+72947863 None:intergenic
TACTCTCATCCAGCAGTTCA+AGG 0.446618 1.3:-72945409 MS.gene91311:CDS
TTTGGATCCTCAGCCAAATC+AGG 0.451900 1.3:-72945565 MS.gene91311:intron
TTGATTCTTGAATGGGGAAG+TGG 0.457488 1.3:-72945286 MS.gene91311:CDS
TAATCCAAGTGTGGAAATAT+GGG 0.461783 1.3:-72946733 MS.gene91311:CDS
TTTCATTTGCATTACTTACA+TGG 0.462597 1.3:+72946312 None:intergenic
TGAATTTAAGTGTCAGGAAA+GGG 0.466143 1.3:-72945156 MS.gene91311:CDS
ATTTGGCTGAGGATCCAAAC+TGG 0.478667 1.3:+72945569 None:intergenic
GCAGATTTCCCATTTGGATG+TGG 0.480363 1.3:-72946248 MS.gene91311:CDS
TGGTTCATCCCACATCCAAA+TGG 0.480525 1.3:+72946239 None:intergenic
ATTGAGGAACGTATATCAAA+TGG 0.482028 1.3:-72947519 MS.gene91311:CDS
CAAACGGTTCAGCTAGAGAA+AGG 0.482100 1.3:-72947441 MS.gene91311:CDS
CAGATTTCCCATTTGGATGT+GGG 0.482548 1.3:-72946247 MS.gene91311:CDS
TCAGCCCATATTTCCACACT+TGG 0.484189 1.3:+72946729 None:intergenic
GGTTGGACAGTATCTGGAAA+TGG 0.492074 1.3:-72947546 MS.gene91311:CDS
ACCAAGACAACAACATTGAA+AGG 0.500494 1.3:-72946662 MS.gene91311:CDS
TACTCCAACTGGACAAGTTG+TGG 0.508753 1.3:-72945314 MS.gene91311:CDS
ACCTCGAAAAGAATCTCAGC+CGG 0.511024 1.3:+72947128 None:intergenic
CTGTTGAAACCAGCTTGTGC+TGG 0.513392 1.3:+72945367 None:intergenic
TTGAATTTAAGTGTCAGGAA+AGG 0.514898 1.3:-72945157 MS.gene91311:CDS
AATCTTGCTTACATGAGGTC+AGG 0.523790 1.3:-72945639 MS.gene91311:CDS
GGTTCATCCCACATCCAAAT+GGG 0.524124 1.3:+72946240 None:intergenic
AAAATGGCCTTGCAATCCTA+TGG 0.528513 1.3:+72945677 None:intergenic
GTAGATATTTCATTACATCA+TGG 0.536564 1.3:-72945229 MS.gene91311:CDS
TTTGCTGGTCCAGCACAAGC+TGG 0.541008 1.3:-72945376 MS.gene91311:CDS
ATCTGGAAATGGAATAATTG+AGG 0.541430 1.3:-72947535 MS.gene91311:CDS
AGGATTTGATCACAACATAG+AGG 0.543988 1.3:-72947568 MS.gene91311:CDS
ACTGAAATGTTATTTGCCAT+AGG 0.544070 1.3:-72945693 MS.gene91311:CDS
CCAAGACAACAACATTGAAA+GGG 0.549553 1.3:-72946661 MS.gene91311:intron
CCTCGAAAAGAATCTCAGCC+GGG 0.555600 1.3:+72947129 None:intergenic
TTATTTGCCATAGGATTGCA+AGG 0.558146 1.3:-72945684 MS.gene91311:CDS
CCCAGAAAATGTTATGACCT+CGG 0.560200 1.3:+72946048 None:intergenic
CAAACATTGACTACCAGGAA+TGG 0.563798 1.3:-72946205 MS.gene91311:CDS
TGAGATAAGTAGAAGGAAAG+AGG 0.565953 1.3:+72947870 None:intergenic
TGATTCTTGAATGGGGAAGT+GGG 0.567685 1.3:-72945285 MS.gene91311:CDS
TTGATCACAACATAGAGGGT+TGG 0.568919 1.3:-72947563 MS.gene91311:CDS
TCATGTAAGCAAGATTTGGC+TGG 0.570296 1.3:+72945646 None:intergenic
ACAAAGGAGAATTGATAGCA+TGG 0.571786 1.3:-72945929 MS.gene91311:CDS
CTTTCACTAATGAGATGAAG+TGG 0.573436 1.3:-72946157 MS.gene91311:CDS
CAATATACCTGATTTGGCTG+AGG 0.579698 1.3:+72945558 None:intergenic
CAAATTCTAACATTGCATCT+GGG 0.582016 1.3:+72946093 None:intergenic
AGTTGCAAACTTCTCGAGCC+CGG 0.584837 1.3:-72947147 MS.gene91311:CDS
TTGTCCACAACTTGTCCAGT+TGG 0.589012 1.3:+72945310 None:intergenic
CAATGTTTGTGAGAATATGA+TGG 0.591061 1.3:+72946219 None:intergenic
GGATTTGATCACAACATAGA+GGG 0.591949 1.3:-72947567 MS.gene91311:CDS
TCTGTTGTTAAAAGGTACAA+AGG 0.592676 1.3:-72945945 MS.gene91311:CDS
GCTTGGCTTCAGTTGAGTGA+AGG 0.592889 1.3:-72947275 MS.gene91311:CDS
CCTCCATATTGTGCTCTCTG+AGG 0.597382 1.3:+72947609 None:intergenic
TCTCACAAACATTGACTACC+AGG 0.597515 1.3:-72946210 MS.gene91311:CDS
GATAATGGAATTTCTGTCCG+AGG 0.602235 1.3:-72946065 MS.gene91311:CDS
CAAAGGAGAATTGATAGCAT+GGG 0.602744 1.3:-72945928 MS.gene91311:CDS
TAATGCAAATGAAACAGCAT+CGG 0.605090 1.3:-72946303 MS.gene91311:CDS
CAGAGAGCACAATATGGAGG+AGG 0.606885 1.3:-72947606 MS.gene91311:CDS
GATAAGTAGAAGGAAAGAGG+TGG 0.610537 1.3:+72947873 None:intergenic
ACTCTCATCCAGCAGTTCAA+GGG 0.613025 1.3:-72945408 MS.gene91311:CDS
ATCCATGCTTTGCTATCACA+TGG 0.619431 1.3:+72947195 None:intergenic
GCAGGCAGAGTACTTTGAAG+AGG 0.621359 1.3:-72945446 MS.gene91311:intron
AGTTGTGATAACACAAACAA+AGG 0.625979 1.3:-72946270 MS.gene91311:CDS
AGCCAAATCTTGCTTACATG+AGG 0.629685 1.3:-72945644 MS.gene91311:CDS
GCAAATGAAACAGCATCGGA+AGG 0.632167 1.3:-72946299 MS.gene91311:CDS
GGAGGCATTATAGTAAACTC+AGG 0.632520 1.3:-72947588 MS.gene91311:CDS
GACAATTTGATTCTTGAATG+GGG 0.637575 1.3:-72945292 MS.gene91311:CDS
GGCCATGTGATAGCAAAGCA+TGG 0.645129 1.3:-72947197 MS.gene91311:CDS
ACAGCCAAAGCAGATAGTAG+AGG 0.647030 1.3:-72945256 MS.gene91311:CDS
GAGGAACGTATATCAAATGG+TGG 0.659694 1.3:-72947516 MS.gene91311:CDS
GCAGAGCAATAATCCAAGTG+TGG 0.666015 1.3:-72946742 MS.gene91311:intron
TGATAGCAAAGCATGGATGT+TGG 0.670562 1.3:-72947190 MS.gene91311:CDS
CCTCAGAGAGCACAATATGG+AGG 0.677720 1.3:-72947609 MS.gene91311:CDS
AATGGAAGTGAACTTGTGCA+TGG 0.692631 1.3:-72947221 MS.gene91311:CDS
GGAAGTGAACTTGTGCATGG+TGG 0.735930 1.3:-72947218 MS.gene91311:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTGTTACAATTTTTT+TGG + chr1.3:72946610-72946629 None:intergenic 10.0%
!! AAGAAATACTAAAATTAGAA+CGG - chr1.3:72946497-72946516 MS.gene91311:intron 15.0%
!! TATAATACTATTGAATATAG+TGG - chr1.3:72947247-72947266 MS.gene91311:CDS 15.0%
!! TGTTATGTAACAAAAAAAAT+TGG - chr1.3:72946239-72946258 MS.gene91311:CDS 15.0%
!!! ATTTCTTTTGAGTATAAAAT+TGG + chr1.3:72946484-72946503 None:intergenic 15.0%
!! AAAAATTGAATTTAAGTGTC+AGG - chr1.3:72947868-72947887 MS.gene91311:intron 20.0%
!! ATTTATAGGGACTAAATATA+GGG - chr1.3:72946015-72946034 MS.gene91311:CDS 20.0%
!!! AATTCAATTTTTTGGAGTAA+TGG + chr1.3:72947860-72947879 None:intergenic 20.0%
!!! AGAATTTTACATGTACTTTT+TGG - chr1.3:72946156-72946175 MS.gene91311:CDS 20.0%
!!! AGTCCTTATTTTTCATTTAT+AGG - chr1.3:72946001-72946020 MS.gene91311:CDS 20.0%
!!! ATTAGATAGTTTTTCACAAA+CGG - chr1.3:72945573-72945592 MS.gene91311:CDS 20.0%
!!! GACACTTAAATTCAATTTTT+TGG + chr1.3:72947868-72947887 None:intergenic 20.0%
!!! GGGATAAATATATTTTCAAT+CGG + chr1.3:72946097-72946116 None:intergenic 20.0%
!!! GTCCTTATTTTTCATTTATA+GGG - chr1.3:72946002-72946021 MS.gene91311:CDS 20.0%
!!! TCTGTTGTATTTAAAACAAA+TGG - chr1.3:72945791-72945810 MS.gene91311:CDS 20.0%
!!! TTAGAATTTGCTAAAGATAA+TGG - chr1.3:72946950-72946969 MS.gene91311:intron 20.0%
!!! TTCATAAACAATGTTGTTTT+TGG + chr1.3:72947223-72947242 None:intergenic 20.0%
! AACCATTTACTAAAAAGGAA+TGG - chr1.3:72946338-72946357 MS.gene91311:CDS 25.0%
! ATAAGAATTCAGAAACAACA+AGG + chr1.3:72946206-72946225 None:intergenic 25.0%
! ATGAAAAATATCAACCTGAA+TGG - chr1.3:72947008-72947027 MS.gene91311:intron 25.0%
! CATTTATAGGGACTAAATAT+AGG - chr1.3:72946014-72946033 MS.gene91311:CDS 25.0%
! GAATTGAATCTGTTGTTAAA+AGG - chr1.3:72947077-72947096 MS.gene91311:intron 25.0%
! GTAATATTGGATTTCCAATA+TGG - chr1.3:72947428-72947447 MS.gene91311:CDS 25.0%
! GTAGATATTTCATTACATCA+TGG - chr1.3:72947801-72947820 MS.gene91311:intron 25.0%
! GTCCCTATAAATGAAAAATA+AGG + chr1.3:72946007-72946026 None:intergenic 25.0%
! TATCCTCATAAAAGTGAAAA+TGG + chr1.3:72947147-72947166 None:intergenic 25.0%
! TGAAAAATATCAACCTGAAT+GGG - chr1.3:72947009-72947028 MS.gene91311:intron 25.0%
! TTTCATTTGCATTACTTACA+TGG + chr1.3:72946721-72946740 None:intergenic 25.0%
!! AGTCTTGATTTATAACTTGT+AGG - chr1.3:72946673-72946692 MS.gene91311:CDS 25.0%
!! TCCTTTTTACAAATCAATAC+TGG + chr1.3:72946644-72946663 None:intergenic 25.0%
!!! ACCAGTATTGATTTGTAAAA+AGG - chr1.3:72946640-72946659 MS.gene91311:intron 25.0%
!!! AGATTCAATTCTTTTTTTCG+CGG + chr1.3:72947068-72947087 None:intergenic 25.0%
!!! CTAGATTTTCTTGGTAATAT+TGG - chr1.3:72947415-72947434 MS.gene91311:intron 25.0%
!!! TAAAATTGGTTTGCTTACTA+TGG + chr1.3:72946470-72946489 None:intergenic 25.0%
!!! TCAAGTTTTTTGAGATAGTT+GGG + chr1.3:72947292-72947311 None:intergenic 25.0%
!!! TCATACACTGTTTTATTTCA+AGG + chr1.3:72945396-72945415 None:intergenic 25.0%
!!! TGATTATTTTGCTACTATTG+AGG - chr1.3:72945286-72945305 MS.gene91311:CDS 25.0%
AGGAATCAATATACCTGATT+TGG + chr1.3:72947481-72947500 None:intergenic 30.0%
AGTTGTGATAACACAAACAA+AGG - chr1.3:72946760-72946779 MS.gene91311:intron 30.0%
ATAATCCAAGTGTGGAAATA+TGG - chr1.3:72946296-72946315 MS.gene91311:CDS 30.0%
ATCTGGAAATGGAATAATTG+AGG - chr1.3:72945495-72945514 MS.gene91311:intron 30.0%
ATCTTCACAACATATATGCA+GGG - chr1.3:72945240-72945259 MS.gene91311:CDS 30.0%
ATTGAGGAACGTATATCAAA+TGG - chr1.3:72945511-72945530 MS.gene91311:intron 30.0%
CAAATTCTAACATTGCATCT+GGG + chr1.3:72946940-72946959 None:intergenic 30.0%
CAACTATCTCAAAAAACTTG+AGG - chr1.3:72947291-72947310 MS.gene91311:intron 30.0%
CAATGTTTGTGAGAATATGA+TGG + chr1.3:72946814-72946833 None:intergenic 30.0%
CATACTTCGTACAAATAACA+TGG - chr1.3:72946581-72946600 MS.gene91311:intron 30.0%
CTTGCAACCATTTACTAAAA+AGG - chr1.3:72946333-72946352 MS.gene91311:CDS 30.0%
CTTGCTTCTATAAAAGAGAA+GGG + chr1.3:72946117-72946136 None:intergenic 30.0%
GACAATTTGATTCTTGAATG+GGG - chr1.3:72947738-72947757 MS.gene91311:intron 30.0%
GATAAATACTTAACCCATTC+AGG + chr1.3:72947025-72947044 None:intergenic 30.0%
GGACAATTTGATTCTTGAAT+GGG - chr1.3:72947737-72947756 MS.gene91311:intron 30.0%
TAATCCAAGTGTGGAAATAT+GGG - chr1.3:72946297-72946316 MS.gene91311:CDS 30.0%
TAATGCAAATGAAACAGCAT+CGG - chr1.3:72946727-72946746 MS.gene91311:CDS 30.0%
TATAGTACAGAGAAAATTCC+AGG - chr1.3:72946896-72946915 MS.gene91311:intron 30.0%
TATCTTCACAACATATATGC+AGG - chr1.3:72945239-72945258 MS.gene91311:CDS 30.0%
TCTTGCTTCTATAAAAGAGA+AGG + chr1.3:72946118-72946137 None:intergenic 30.0%
TGAATTTAAGTGTCAGGAAA+GGG - chr1.3:72947874-72947893 MS.gene91311:CDS 30.0%
TGGACAATTTGATTCTTGAA+TGG - chr1.3:72947736-72947755 MS.gene91311:intron 30.0%
TTGAATTTAAGTGTCAGGAA+AGG - chr1.3:72947873-72947892 MS.gene91311:CDS 30.0%
TTTGTAATACTACCAACTTG+AGG - chr1.3:72946436-72946455 MS.gene91311:intron 30.0%
! ACTGAAATGTTATTTGCCAT+AGG - chr1.3:72947337-72947356 MS.gene91311:intron 30.0%
! CACTTTTATGAGGATAAACT+AGG - chr1.3:72947151-72947170 MS.gene91311:CDS 30.0%
! CGGCTTAAAATTACATGTTT+TGG + chr1.3:72946077-72946096 None:intergenic 30.0%
! TCTGTTGTTAAAAGGTACAA+AGG - chr1.3:72947085-72947104 MS.gene91311:intron 30.0%
!! CTCCATTCCTTTTTAGTAAA+TGG + chr1.3:72946343-72946362 None:intergenic 30.0%
!! CTTTTTAGTAAATGGTTGCA+AGG + chr1.3:72946335-72946354 None:intergenic 30.0%
!! GTGATTCTTATTTGTTATGC+AGG - chr1.3:72947566-72947585 MS.gene91311:CDS 30.0%
!! TGTCCATTTTCACTTTTATG+AGG - chr1.3:72947141-72947160 MS.gene91311:CDS 30.0%
!! TTTTATTTCCACATTCAGCT+TGG - chr1.3:72945738-72945757 MS.gene91311:CDS 30.0%
!!! ACTGTTTTATTTCAAGGCAT+TGG + chr1.3:72945390-72945409 None:intergenic 30.0%
!!! CTCAAGTTTTTTGAGATAGT+TGG + chr1.3:72947293-72947312 None:intergenic 30.0%
!!! GGATTGATATACACTTTTTC+AGG - chr1.3:72945610-72945629 MS.gene91311:CDS 30.0%
!!! TTTTTGGAGTAATGGTTTGA+AGG + chr1.3:72947852-72947871 None:intergenic 30.0%
AATTCCTCTACTATCTGCTT+TGG + chr1.3:72947781-72947800 None:intergenic 35.0%
AATTTCCAAACTACTCCAAC+TGG - chr1.3:72947705-72947724 MS.gene91311:intron 35.0%
ACCAAGACAACAACATTGAA+AGG - chr1.3:72946368-72946387 MS.gene91311:intron 35.0%
AGAAACCTGAGATAAGTAGA+AGG + chr1.3:72945170-72945189 None:intergenic 35.0%
AGGATTTGATCACAACATAG+AGG - chr1.3:72945462-72945481 MS.gene91311:intron 35.0%
ATTATAATCCCTTGAACTGC+TGG + chr1.3:72947633-72947652 None:intergenic 35.0%
CAAGGGATTATAATGTTTGC+TGG - chr1.3:72947639-72947658 MS.gene91311:intron 35.0%
CCAAGACAACAACATTGAAA+GGG - chr1.3:72946369-72946388 MS.gene91311:intron 35.0%
CTTTCACTAATGAGATGAAG+TGG - chr1.3:72946873-72946892 MS.gene91311:intron 35.0%
GCAAATTCTAACATTGCATC+TGG + chr1.3:72946941-72946960 None:intergenic 35.0%
GGATTTGATCACAACATAGA+GGG - chr1.3:72945463-72945482 MS.gene91311:intron 35.0%
TAGAACGGATAATAAAGACG+TGG - chr1.3:72946512-72946531 MS.gene91311:intron 35.0%
TCTTTCCTTCTACTTATCTC+AGG - chr1.3:72945162-72945181 MS.gene91311:CDS 35.0%
TGAGATAAGTAGAAGGAAAG+AGG + chr1.3:72945163-72945182 None:intergenic 35.0%
TTATTTGCCATAGGATTGCA+AGG - chr1.3:72947346-72947365 MS.gene91311:intron 35.0%
TTGTCGATGCATAAGTTTAG+TGG + chr1.3:72946553-72946572 None:intergenic 35.0%
! ACAAAGGAGAATTGATAGCA+TGG - chr1.3:72947101-72947120 MS.gene91311:intron 35.0%
! ACCTTGTACTTTTCCTGAAT+CGG - chr1.3:72946179-72946198 MS.gene91311:CDS 35.0%
! ATGGATTTTGTTCCTCAAGT+TGG + chr1.3:72946451-72946470 None:intergenic 35.0%
! CAAAGGAGAATTGATAGCAT+GGG - chr1.3:72947102-72947121 MS.gene91311:intron 35.0%
! GTAGCACTGAATTATAGAGA+GGG + chr1.3:72945199-72945218 None:intergenic 35.0%
! TGTAGCACTGAATTATAGAG+AGG + chr1.3:72945200-72945219 None:intergenic 35.0%
!! GAGATTCTTTTCGAGGTTAA+CGG - chr1.3:72945908-72945927 MS.gene91311:CDS 35.0%
!! GGATGTTGGTCTCTTTTAAA+AGG - chr1.3:72945854-72945873 MS.gene91311:CDS 35.0%
!! TCATTTTACGTTTGAAGTCG+AGG + chr1.3:72947501-72947520 None:intergenic 35.0%
!! TGTTGGTCTCTTTTAAAAGG+CGG - chr1.3:72945857-72945876 MS.gene91311:CDS 35.0%
!!! AGTTTTTTGAGATAGTTGGG+TGG + chr1.3:72947289-72947308 None:intergenic 35.0%
!!! GTTTTTTGAGATAGTTGGGT+GGG + chr1.3:72947288-72947307 None:intergenic 35.0%
AATCTTGCTTACATGAGGTC+AGG - chr1.3:72947391-72947410 MS.gene91311:intron 40.0%
AATGGAAGTGAACTTGTGCA+TGG - chr1.3:72945809-72945828 MS.gene91311:CDS 40.0%
ACAAAGGCAGATTTCCCATT+TGG - chr1.3:72946776-72946795 MS.gene91311:intron 40.0%
ACGGATAATAAAGACGTGGT+TGG - chr1.3:72946516-72946535 MS.gene91311:intron 40.0%
AGCCAAATCTTGCTTACATG+AGG - chr1.3:72947386-72947405 MS.gene91311:intron 40.0%
ATCTTGACACAAACCATTCC+TGG + chr1.3:72946841-72946860 None:intergenic 40.0%
CAGATTTCCCATTTGGATGT+GGG - chr1.3:72946783-72946802 MS.gene91311:intron 40.0%
CCCAGAAAATGTTATGACCT+CGG + chr1.3:72946985-72947004 None:intergenic 40.0%
CCCTTTCAATGTTGTTGTCT+TGG + chr1.3:72946372-72946391 None:intergenic 40.0%
CGGATAATAAAGACGTGGTT+GGG - chr1.3:72946517-72946536 MS.gene91311:intron 40.0%
CTATCTGCTTTGGCTGTATA+AGG + chr1.3:72947771-72947790 None:intergenic 40.0%
CTTGAGGAGATTATGCAATC+TGG - chr1.3:72947307-72947326 MS.gene91311:intron 40.0%
GACCTCATGTAAGCAAGATT+TGG + chr1.3:72947391-72947410 None:intergenic 40.0%
GAGGAACGTATATCAAATGG+TGG - chr1.3:72945514-72945533 MS.gene91311:intron 40.0%
GATAAGTAGAAGGAAAGAGG+TGG + chr1.3:72945160-72945179 None:intergenic 40.0%
TCATGTAAGCAAGATTTGGC+TGG + chr1.3:72947387-72947406 None:intergenic 40.0%
TGATAGCAAAGCATGGATGT+TGG - chr1.3:72945840-72945859 MS.gene91311:CDS 40.0%
TGATTCTTGAATGGGGAAGT+GGG - chr1.3:72947745-72947764 MS.gene91311:CDS 40.0%
TTGATCACAACATAGAGGGT+TGG - chr1.3:72945467-72945486 MS.gene91311:intron 40.0%
TTGATTCTTGAATGGGGAAG+TGG - chr1.3:72947744-72947763 MS.gene91311:intron 40.0%
! AAAATGGCCTTGCAATCCTA+TGG + chr1.3:72947356-72947375 None:intergenic 40.0%
! ACCGATTCAGGAAAAGTACA+AGG + chr1.3:72946183-72946202 None:intergenic 40.0%
! AGGTCAGGTCTAGATTTTCT+TGG - chr1.3:72947406-72947425 MS.gene91311:intron 40.0%
! ATAGTGTAGTTTTCTTGGCC+TGG + chr1.3:72946917-72946936 None:intergenic 40.0%
! ATCCATGCTTTGCTATCACA+TGG + chr1.3:72945838-72945857 None:intergenic 40.0%
! ATGTTTTCGCAGTTACACGA+AGG - chr1.3:72947530-72947549 MS.gene91311:CDS 40.0%
! CAAACATTGACTACCAGGAA+TGG - chr1.3:72946825-72946844 MS.gene91311:intron 40.0%
! CCGAGGTCATAACATTTTCT+GGG - chr1.3:72946982-72947001 MS.gene91311:intron 40.0%
! CTGGGATAGTGTAGTTTTCT+TGG + chr1.3:72946922-72946941 None:intergenic 40.0%
! TCCGAGGTCATAACATTTTC+TGG - chr1.3:72946981-72947000 MS.gene91311:intron 40.0%
! TCTCACAAACATTGACTACC+AGG - chr1.3:72946820-72946839 MS.gene91311:intron 40.0%
!! CAATATACCTGATTTGGCTG+AGG + chr1.3:72947475-72947494 None:intergenic 40.0%
!! GATAATGGAATTTCTGTCCG+AGG - chr1.3:72946965-72946984 MS.gene91311:intron 40.0%
!! GGAGGCATTATAGTAAACTC+AGG - chr1.3:72945442-72945461 MS.gene91311:CDS 40.0%
AACTGAAGCCAAGCTGAATG+TGG + chr1.3:72945749-72945768 None:intergenic 45.0%
AATAAAGACGTGGTTGGGAG+TGG - chr1.3:72946522-72946541 MS.gene91311:intron 45.0%
ACAGCCAAAGCAGATAGTAG+AGG - chr1.3:72947774-72947793 MS.gene91311:intron 45.0%
ACCTCGAAAAGAATCTCAGC+CGG + chr1.3:72945905-72945924 None:intergenic 45.0%
ACTCTCATCCAGCAGTTCAA+GGG - chr1.3:72947622-72947641 MS.gene91311:CDS 45.0%
ATAGAGGGTTGGACAGTATC+TGG - chr1.3:72945478-72945497 MS.gene91311:intron 45.0%
ATTTGGCTGAGGATCCAAAC+TGG + chr1.3:72947464-72947483 None:intergenic 45.0%
CAAACGGTTCAGCTAGAGAA+AGG - chr1.3:72945589-72945608 MS.gene91311:CDS 45.0%
CACAACATATATGCAGGGCT+AGG - chr1.3:72945245-72945264 MS.gene91311:CDS 45.0%
CTTGTCCAGTTGGAGTAGTT+TGG + chr1.3:72947713-72947732 None:intergenic 45.0%
GCAGAGCAATAATCCAAGTG+TGG - chr1.3:72946288-72946307 MS.gene91311:CDS 45.0%
GCAGATTTCCCATTTGGATG+TGG - chr1.3:72946782-72946801 MS.gene91311:intron 45.0%
GGTTCATCCCACATCCAAAT+GGG + chr1.3:72946793-72946812 None:intergenic 45.0%
GGTTGGACAGTATCTGGAAA+TGG - chr1.3:72945484-72945503 MS.gene91311:intron 45.0%
TACTCCAACTGGACAAGTTG+TGG - chr1.3:72947716-72947735 MS.gene91311:intron 45.0%
TACTCTCATCCAGCAGTTCA+AGG - chr1.3:72947621-72947640 MS.gene91311:CDS 45.0%
TCAGCCCATATTTCCACACT+TGG + chr1.3:72946304-72946323 None:intergenic 45.0%
TGGTTCATCCCACATCCAAA+TGG + chr1.3:72946794-72946813 None:intergenic 45.0%
TTGTCCACAACTTGTCCAGT+TGG + chr1.3:72947723-72947742 None:intergenic 45.0%
TTTGGATCCTCAGCCAAATC+AGG - chr1.3:72947465-72947484 MS.gene91311:CDS 45.0%
! GAAACAACAAGGACCGATTC+AGG + chr1.3:72946195-72946214 None:intergenic 45.0%
! GAACCTCAGAGAGCACAATA+TGG - chr1.3:72945418-72945437 MS.gene91311:CDS 45.0%
! GCAAATGAAACAGCATCGGA+AGG - chr1.3:72946731-72946750 MS.gene91311:CDS 45.0%
! TGTCAGGAAAGGGTTTTCAC+AGG - chr1.3:72947884-72947903 MS.gene91311:CDS 45.0%
!! TTGCAAGGCCATTTTGCAAG+TGG - chr1.3:72947361-72947380 MS.gene91311:intron 45.0%
!! TTATGATTATTAATTTAATA+TGG - chr1.3:72945326-72945345 MS.gene91311:CDS 5.0%
AGGGCTAGGCGTTCATTCTT+TGG - chr1.3:72945259-72945278 MS.gene91311:CDS 50.0%
AGTTGCAAACTTCTCGAGCC+CGG - chr1.3:72945883-72945902 MS.gene91311:CDS 50.0%
ATGGCTCACAGAAGCCAGTT+TGG - chr1.3:72947447-72947466 MS.gene91311:CDS 50.0%
CCTCCATATTGTGCTCTCTG+AGG + chr1.3:72945424-72945443 None:intergenic 50.0%
CCTCGAAAAGAATCTCAGCC+GGG + chr1.3:72945904-72945923 None:intergenic 50.0%
CGCGGCTTTGCGCAATTTAT+CGG + chr1.3:72947050-72947069 None:intergenic 50.0%
CTGGCTTCTGTGAGCCATAT+TGG + chr1.3:72947445-72947464 None:intergenic 50.0%
CTGTTGAAACCAGCTTGTGC+TGG + chr1.3:72947666-72947685 None:intergenic 50.0%
GCGGCTTTGCGCAATTTATC+GGG + chr1.3:72947049-72947068 None:intergenic 50.0%
GCTTGGCTTCAGTTGAGTGA+AGG - chr1.3:72945755-72945774 MS.gene91311:CDS 50.0%
GGAAGTGAACTTGTGCATGG+TGG - chr1.3:72945812-72945831 MS.gene91311:CDS 50.0%
GGCCATGTGATAGCAAAGCA+TGG - chr1.3:72945833-72945852 MS.gene91311:CDS 50.0%
! CAGAGAGCACAATATGGAGG+AGG - chr1.3:72945424-72945443 MS.gene91311:CDS 50.0%
! CCTCAGAGAGCACAATATGG+AGG - chr1.3:72945421-72945440 MS.gene91311:CDS 50.0%
! GCAGGCAGAGTACTTTGAAG+AGG - chr1.3:72947584-72947603 MS.gene91311:CDS 50.0%
! TTGGCTGGCCACTTGCAAAA+TGG + chr1.3:72947372-72947391 None:intergenic 50.0%
!! CAAGGCATTGGCAACACAAG+TGG + chr1.3:72945378-72945397 None:intergenic 50.0%
TTTGCTGGTCCAGCACAAGC+TGG - chr1.3:72947654-72947673 MS.gene91311:intron 55.0%
! CCCGGCTGAGATTCTTTTCG+AGG - chr1.3:72945901-72945920 MS.gene91311:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 72945117 72947935 72945117 ID=MS.gene91311
chr1.3 mRNA 72945117 72947935 72945117 ID=MS.gene91311.t1;Parent=MS.gene91311
chr1.3 exon 72947869 72947935 72947869 ID=MS.gene91311.t1.exon1;Parent=MS.gene91311.t1
chr1.3 CDS 72947869 72947935 72947869 ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1
chr1.3 exon 72947745 72947791 72947745 ID=MS.gene91311.t1.exon2;Parent=MS.gene91311.t1
chr1.3 CDS 72947745 72947791 72947745 ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1
chr1.3 exon 72947421 72947643 72947421 ID=MS.gene91311.t1.exon3;Parent=MS.gene91311.t1
chr1.3 CDS 72947421 72947643 72947421 ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1
chr1.3 exon 72947130 72947296 72947130 ID=MS.gene91311.t1.exon4;Parent=MS.gene91311.t1
chr1.3 CDS 72947130 72947296 72947130 ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1
chr1.3 exon 72946662 72946760 72946662 ID=MS.gene91311.t1.exon5;Parent=MS.gene91311.t1
chr1.3 CDS 72946662 72946760 72946662 ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1
chr1.3 exon 72945566 72946357 72945566 ID=MS.gene91311.t1.exon6;Parent=MS.gene91311.t1
chr1.3 CDS 72945566 72946357 72945566 ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1
chr1.3 exon 72945117 72945464 72945117 ID=MS.gene91311.t1.exon7;Parent=MS.gene91311.t1
chr1.3 CDS 72945117 72945464 72945117 ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1
Gene Sequence

>MS.gene91311

ATGAAGGTTTCTGCAAAATGTTGCAATTTGTTGTTCATCACCACCTCTTTCCTTCTACTTATCTCAGGTTTCTATCTCTCCCTCTCTATAATTCAGTGCTACAATTCTTTTAATTTCTAACATATCTTCACAACATATATGCAGGGCTAGGCGTTCATTCTTTGGATTATGATTATTTTGCTACTATTGAGGCAATGACACGTCTTTTATTATGATTATTAATTTAATATGGCTTATGATTATGTTACAAACTTTAATCCACTTGTGTTGCCAATGCCTTGAAATAAAACAGTGTATGAAAGAACCTCAGAGAGCACAATATGGAGGAGGCATTATAGTAAACTCAGGATTTGATCACAACATAGAGGGTTGGACAGTATCTGGAAATGGAATAATTGAGGAACGTATATCAAATGGTGGAAATAGATTCATTGTTGCAAGCAAAAGAACACAATCATTAGATAGTTTTTCACAAACGGTTCAGCTAGAGAAAGGATTGATATACACTTTTTCAGGTAACTAACGTATGTTTCTCTGTCACTAACATTCATCAAATGAATGTAAATTATCATATCATATTGATCATTAATTCATTTCTTTTCTAAAACATATTTTGATTGATTTTATTTCCACATTCAGCTTGGCTTCAGTTGAGTGAAGGAAGTGACACAGTTTCTGTTGTATTTAAAACAAATGGAAGTGAACTTGTGCATGGTGGCCATGTGATAGCAAAGCATGGATGTTGGTCTCTTTTAAAAGGCGGCATAGTTGCAAACTTCTCGAGCCCGGCTGAGATTCTTTTCGAGGTTAACGGCATTCTTCTTTGAGTTAAATATGTTTTTAGCTTTATGAATTTAGTCTCTATACAAATTTTATTCAATTCTAGTCCTTATTTTTCATTTATAGGGACTAAATATAGGGAGACTAAAATTGAATAAATTTTTTGTAGACTTAATACCAAAACATGTAATTTTAAGCCGATTGAAAATATATTTATCCCTTCTCTTTTATAGAAGCAAGAAAAGAAAGTTCTTATCTAAGAATTTTACATGTACTTTTTGGACCTTGTACTTTTCCTGAATCGGTCCTTGTTGTTTCTGAATTCTTATCTAAAATGAAATCTGTTATGTAACAAAAAAAATTGGTAAATGAAATTGACTAAGAATGCATTGCAGAGCAATAATCCAAGTGTGGAAATATGGGCTGATAGTGTGTCCTTGCAACCATTTACTAAAAAGGAATGGAGATCACACCAAGACAACAACATTGAAAGGGTAAGCTAATGCAACACGAAACTTGCATTATTCTTCTATGCTTACTTTGTAATACTACCAACTTGAGGAACAAAATCCATAGTAAGCAAACCAATTTTATACTCAAAAGAAATACTAAAATTAGAACGGATAATAAAGACGTGGTTGGGAGTGGAAACTCCACTAAACTTATGCATCGACAAAATTTATGCATACTTCGTACAAATAACATGGTTACCAAAAAAATTGTAACAAAATATAAGAATAGTAACCAGTATTGATTTGTAAAAAGGAAGAGTAACTAGTCTTGATTTATAACTTGTAGGTACGTAAGAGTAGAGTGAGATTCCATGTAAGTAATGCAAATGAAACAGCATCGGAAGGAGCAACAGTTGTGATAACACAAACAAAGGCAGATTTCCCATTTGGATGTGGGATGAACCATCATATTCTCACAAACATTGACTACCAGGAATGGTTTGTGTCAAGATTCAAGTACACAACTTTCACTAATGAGATGAAGTGGTATAGTACAGAGAAAATTCCAGGCCAAGAAAACTACACTATCCCAGATGCAATGTTAGAATTTGCTAAAGATAATGGAATTTCTGTCCGAGGTCATAACATTTTCTGGGACGATGAAAAATATCAACCTGAATGGGTTAAGTATTTATCGCCCGATAAATTGCGCAAAGCCGCGAAAAAAAGAATTGAATCTGTTGTTAAAAGGTACAAAGGAGAATTGATAGCATGGGATGTAGTGAATGAAAATGTCCATTTTCACTTTTATGAGGATAAACTAGGTGAAAATGCATCTGAATTATACTATTTAAAAGCTCATGAGCTTGATCCAAAAACAACATTGTTTATGAATGAGTATAATACTATTGAATATAGTGGAGATAAAGTTGTTAGCCCACCCAACTATCTCAAAAAACTTGAGGAGATTATGCAATCTGGAGAAGCTACTGAAATGTTATTTGCCATAGGATTGCAAGGCCATTTTGCAAGTGGCCAGCCAAATCTTGCTTACATGAGGTCAGGTCTAGATTTTCTTGGTAATATTGGATTTCCAATATGGCTCACAGAAGCCAGTTTGGATCCTCAGCCAAATCAGGTATATTGATTCCTCGACTTCAAACGTAAAATGAAAATAGAAAATGTTTTCGCAGTTACACGAAGGAAGTAGAAAATGTGTGATTCTTATTTGTTATGCAGGCAGAGTACTTTGAAGAGGTACTAAGAGAAGCATACTCTCATCCAGCAGTTCAAGGGATTATAATGTTTGCTGGTCCAGCACAAGCTGGTTTCAACAGTACACTTCTTGCAGATACAAATTTCCAAACTACTCCAACTGGACAAGTTGTGGACAATTTGATTCTTGAATGGGGAAGTGGGCCTTATACAGCCAAAGCAGATAGTAGAGGAATTGTAGATATTTCATTACATCATGGAGATTATGATGTAACTGTTACACATCCTTCAAACCATTACTCCAAAAAATTGAATTTAAGTGTCAGGAAAGGGTTTTCACAGGAAAACGTCCATGTGAAAATGCATGCCTAA

Protein sequence

>MS.gene91311.t1

MKVSAKCCNLLFITTSFLLLISGLGVHSLDYDYFATIECMKEPQRAQYGGGIIVNSGFDHNIEGWTVSGNGIIEERISNGGNRFIVASKRTQSLDSFSQTVQLEKGLIYTFSAWLQLSEGSDTVSVVFKTNGSELVHGGHVIAKHGCWSLLKGGIVANFSSPAEILFESNNPSVEIWADSVSLQPFTKKEWRSHQDNNIERVRKSRVRFHVSNANETASEGATVVITQTKADFPFGCGMNHHILTNIDYQEWFVSRFKYTTFTNEMKWYSTEKIPGQENYTIPDAMLEFAKDNGISVRGHNIFWDDEKYQPEWVKYLSPDKLRKAAKKRIESVVKRYKGELIAWDVVNENVHFHFYEDKLGENASELYYLKAHELDPKTTLFMNEYNTIEYSGDKVVSPPNYLKKLEEIMQSGEATEMLFAIGLQGHFASGQPNLAYMRSGLDFLGNIGFPIWLTEASLDPQPNQAEYFEEVLREAYSHPAVQGIIMFAGPAQAGFNSTLLADTNFQTTPTGQVVDNLILEWGSGPYTAKADSRGIVDISLHHGDYDVTVTHPSNHYSKKLNLSVRKGFSQENVHVKMHA