Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91311.t1 | KEH44019.1 | 95.5 | 581 | 25 | 1 | 1 | 580 | 1 | 581 | 0.00E+00 | 1134 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91311.t1 | Q84WT5 | 46.2 | 580 | 276 | 8 | 9 | 574 | 6 | 563 | 8.6e-142 | 505.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91311.t1 | A0A072VPS6 | 95.5 | 581 | 25 | 1 | 1 | 580 | 1 | 581 | 0.0e+00 | 1134.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050809 | MS.gene91311 | 0.808984 | 2.37E-50 | -1.69E-46 |
MS.gene052870 | MS.gene91311 | -0.803829 | 2.89E-49 | -1.69E-46 |
MS.gene052872 | MS.gene91311 | -0.803506 | 3.37E-49 | -1.69E-46 |
MS.gene053479 | MS.gene91311 | -0.803276 | 3.77E-49 | -1.69E-46 |
MS.gene056947 | MS.gene91311 | -0.801493 | 8.77E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91311.t1 | MTR_1g106200 | 95.525 | 581 | 25 | 1 | 1 | 580 | 1 | 581 | 0.0 | 1157 |
MS.gene91311.t1 | MTR_1g106200 | 90.017 | 581 | 24 | 2 | 1 | 580 | 7 | 554 | 0.0 | 1074 |
MS.gene91311.t1 | MTR_1g106910 | 75.000 | 580 | 145 | 0 | 1 | 580 | 1 | 580 | 0.0 | 916 |
MS.gene91311.t1 | MTR_1g106790 | 73.448 | 580 | 153 | 1 | 1 | 580 | 2 | 580 | 0.0 | 899 |
MS.gene91311.t1 | MTR_1g106770 | 74.128 | 545 | 141 | 0 | 36 | 580 | 2 | 546 | 0.0 | 876 |
MS.gene91311.t1 | MTR_7g024420 | 50.188 | 532 | 261 | 3 | 22 | 553 | 13 | 540 | 0.0 | 553 |
MS.gene91311.t1 | MTR_4g074070 | 48.155 | 542 | 277 | 3 | 12 | 553 | 3 | 540 | 0.0 | 538 |
MS.gene91311.t1 | MTR_5g049180 | 47.664 | 535 | 276 | 3 | 18 | 552 | 9 | 539 | 0.0 | 530 |
MS.gene91311.t1 | MTR_3g117800 | 36.972 | 568 | 316 | 10 | 18 | 578 | 1 | 533 | 5.49e-116 | 355 |
MS.gene91311.t1 | MTR_3g117800 | 39.958 | 478 | 270 | 7 | 108 | 578 | 15 | 482 | 1.28e-112 | 345 |
MS.gene91311.t1 | MTR_3g117800 | 40.674 | 445 | 250 | 5 | 139 | 578 | 17 | 452 | 1.80e-109 | 335 |
MS.gene91311.t1 | MTR_4g121520 | 54.887 | 266 | 67 | 3 | 315 | 580 | 222 | 434 | 1.18e-85 | 273 |
MS.gene91311.t1 | MTR_3g103610 | 29.661 | 472 | 296 | 12 | 44 | 489 | 192 | 653 | 9.46e-59 | 209 |
MS.gene91311.t1 | MTR_1g017020 | 27.641 | 568 | 361 | 15 | 44 | 578 | 353 | 903 | 2.05e-56 | 204 |
MS.gene91311.t1 | MTR_1463s0010 | 40.310 | 129 | 31 | 4 | 381 | 509 | 1 | 83 | 1.11e-16 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91311.t1 | AT4G33840 | 51.292 | 542 | 257 | 5 | 27 | 565 | 21 | 558 | 0.0 | 564 |
MS.gene91311.t1 | AT4G33830 | 49.074 | 540 | 267 | 6 | 29 | 565 | 24 | 558 | 1.68e-180 | 522 |
MS.gene91311.t1 | AT4G33860 | 50.379 | 528 | 255 | 5 | 29 | 553 | 23 | 546 | 7.72e-180 | 520 |
MS.gene91311.t1 | AT4G33820 | 46.207 | 580 | 276 | 8 | 9 | 574 | 6 | 563 | 5.76e-177 | 513 |
MS.gene91311.t1 | AT4G33810 | 45.833 | 576 | 279 | 8 | 8 | 574 | 11 | 562 | 2.40e-168 | 491 |
MS.gene91311.t1 | AT4G33810 | 45.833 | 576 | 279 | 8 | 8 | 574 | 11 | 562 | 2.40e-168 | 491 |
MS.gene91311.t1 | AT4G33810 | 45.833 | 576 | 279 | 8 | 8 | 574 | 11 | 562 | 2.40e-168 | 491 |
MS.gene91311.t1 | AT4G33810 | 47.514 | 543 | 256 | 7 | 40 | 574 | 1 | 522 | 2.01e-166 | 484 |
MS.gene91311.t1 | AT4G33810 | 47.514 | 543 | 256 | 7 | 40 | 574 | 1 | 522 | 2.01e-166 | 484 |
MS.gene91311.t1 | AT2G14690 | 44.946 | 554 | 259 | 10 | 31 | 567 | 32 | 556 | 6.57e-162 | 474 |
MS.gene91311.t1 | AT4G38650 | 37.563 | 591 | 327 | 13 | 1 | 579 | 1 | 561 | 1.47e-125 | 380 |
MS.gene91311.t1 | AT4G38300 | 44.015 | 259 | 131 | 4 | 201 | 459 | 10 | 254 | 1.40e-71 | 231 |
MS.gene91311.t1 | AT1G10050 | 28.862 | 589 | 361 | 16 | 32 | 578 | 523 | 1095 | 1.05e-59 | 215 |
MS.gene91311.t1 | AT1G10050 | 28.862 | 589 | 361 | 16 | 32 | 578 | 491 | 1063 | 1.49e-59 | 214 |
MS.gene91311.t1 | AT1G10050 | 28.862 | 589 | 361 | 16 | 32 | 578 | 491 | 1063 | 1.49e-59 | 214 |
MS.gene91311.t1 | AT1G58370 | 30.660 | 424 | 274 | 10 | 75 | 489 | 414 | 826 | 5.15e-58 | 209 |
MS.gene91311.t1 | AT1G58370 | 30.660 | 424 | 274 | 10 | 75 | 489 | 442 | 854 | 7.70e-58 | 209 |
MS.gene91311.t1 | AT4G08160 | 30.162 | 494 | 315 | 15 | 80 | 554 | 245 | 727 | 8.12e-57 | 204 |
MS.gene91311.t1 | AT4G08160 | 31.754 | 422 | 262 | 12 | 80 | 484 | 245 | 657 | 5.48e-56 | 200 |
Find 104 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGCAACCATTTACTAAAA+AGG | 0.196675 | 1.3:-72946697 | MS.gene91311:CDS |
CGCGGCTTTGCGCAATTTAT+CGG | 0.228371 | 1.3:+72945983 | None:intergenic |
ATAATCCAAGTGTGGAAATA+TGG | 0.243112 | 1.3:-72946734 | MS.gene91311:CDS |
GTAATATTGGATTTCCAATA+TGG | 0.244796 | 1.3:-72945602 | MS.gene91311:CDS |
GATAAATACTTAACCCATTC+AGG | 0.250247 | 1.3:+72946008 | None:intergenic |
TTAGAATTTGCTAAAGATAA+TGG | 0.267266 | 1.3:-72946080 | MS.gene91311:CDS |
CTGGCTTCTGTGAGCCATAT+TGG | 0.278897 | 1.3:+72945588 | None:intergenic |
TATCCTCATAAAAGTGAAAA+TGG | 0.296065 | 1.3:+72945886 | None:intergenic |
CCCTTTCAATGTTGTTGTCT+TGG | 0.298203 | 1.3:+72946661 | None:intergenic |
GAATTGAATCTGTTGTTAAA+AGG | 0.302891 | 1.3:-72945953 | MS.gene91311:CDS |
CTTGTCCAGTTGGAGTAGTT+TGG | 0.315012 | 1.3:+72945320 | None:intergenic |
GCAAATTCTAACATTGCATC+TGG | 0.318088 | 1.3:+72946092 | None:intergenic |
CTATCTGCTTTGGCTGTATA+AGG | 0.325055 | 1.3:+72945262 | None:intergenic |
ATAGAGGGTTGGACAGTATC+TGG | 0.325119 | 1.3:-72947552 | MS.gene91311:CDS |
TTGGCTGGCCACTTGCAAAA+TGG | 0.329470 | 1.3:+72945661 | None:intergenic |
AGGGCTAGGCGTTCATTCTT+TGG | 0.333367 | 1.3:-72947771 | MS.gene91311:CDS |
AGGAATCAATATACCTGATT+TGG | 0.339675 | 1.3:+72945552 | None:intergenic |
ACAAAGGCAGATTTCCCATT+TGG | 0.372177 | 1.3:-72946254 | MS.gene91311:CDS |
CAAGGGATTATAATGTTTGC+TGG | 0.384553 | 1.3:-72945391 | MS.gene91311:CDS |
GACCTCATGTAAGCAAGATT+TGG | 0.386824 | 1.3:+72945642 | None:intergenic |
ATGGCTCACAGAAGCCAGTT+TGG | 0.392362 | 1.3:-72945583 | MS.gene91311:CDS |
ATCTTGACACAAACCATTCC+TGG | 0.399462 | 1.3:+72946192 | None:intergenic |
AATTCCTCTACTATCTGCTT+TGG | 0.405314 | 1.3:+72945252 | None:intergenic |
TATAGTACAGAGAAAATTCC+AGG | 0.407018 | 1.3:-72946134 | MS.gene91311:CDS |
TCTGTTGTATTTAAAACAAA+TGG | 0.411591 | 1.3:-72947239 | MS.gene91311:CDS |
GCGGCTTTGCGCAATTTATC+GGG | 0.413681 | 1.3:+72945984 | None:intergenic |
ATTATAATCCCTTGAACTGC+TGG | 0.416207 | 1.3:+72945400 | None:intergenic |
TCTTTCCTTCTACTTATCTC+AGG | 0.416467 | 1.3:-72947868 | MS.gene91311:intron |
GGACAATTTGATTCTTGAAT+GGG | 0.428361 | 1.3:-72945293 | MS.gene91311:CDS |
AATTTCCAAACTACTCCAAC+TGG | 0.432243 | 1.3:-72945325 | MS.gene91311:CDS |
GAACCTCAGAGAGCACAATA+TGG | 0.433972 | 1.3:-72947612 | MS.gene91311:CDS |
CTTGAGGAGATTATGCAATC+TGG | 0.434202 | 1.3:-72945723 | MS.gene91311:CDS |
TATAATACTATTGAATATAG+TGG | 0.435039 | 1.3:-72945783 | MS.gene91311:CDS |
TGGACAATTTGATTCTTGAA+TGG | 0.435532 | 1.3:-72945294 | MS.gene91311:CDS |
AGAAACCTGAGATAAGTAGA+AGG | 0.437755 | 1.3:+72947863 | None:intergenic |
TACTCTCATCCAGCAGTTCA+AGG | 0.446618 | 1.3:-72945409 | MS.gene91311:CDS |
TTTGGATCCTCAGCCAAATC+AGG | 0.451900 | 1.3:-72945565 | MS.gene91311:intron |
TTGATTCTTGAATGGGGAAG+TGG | 0.457488 | 1.3:-72945286 | MS.gene91311:CDS |
TAATCCAAGTGTGGAAATAT+GGG | 0.461783 | 1.3:-72946733 | MS.gene91311:CDS |
TTTCATTTGCATTACTTACA+TGG | 0.462597 | 1.3:+72946312 | None:intergenic |
TGAATTTAAGTGTCAGGAAA+GGG | 0.466143 | 1.3:-72945156 | MS.gene91311:CDS |
ATTTGGCTGAGGATCCAAAC+TGG | 0.478667 | 1.3:+72945569 | None:intergenic |
GCAGATTTCCCATTTGGATG+TGG | 0.480363 | 1.3:-72946248 | MS.gene91311:CDS |
TGGTTCATCCCACATCCAAA+TGG | 0.480525 | 1.3:+72946239 | None:intergenic |
ATTGAGGAACGTATATCAAA+TGG | 0.482028 | 1.3:-72947519 | MS.gene91311:CDS |
CAAACGGTTCAGCTAGAGAA+AGG | 0.482100 | 1.3:-72947441 | MS.gene91311:CDS |
CAGATTTCCCATTTGGATGT+GGG | 0.482548 | 1.3:-72946247 | MS.gene91311:CDS |
TCAGCCCATATTTCCACACT+TGG | 0.484189 | 1.3:+72946729 | None:intergenic |
GGTTGGACAGTATCTGGAAA+TGG | 0.492074 | 1.3:-72947546 | MS.gene91311:CDS |
ACCAAGACAACAACATTGAA+AGG | 0.500494 | 1.3:-72946662 | MS.gene91311:CDS |
TACTCCAACTGGACAAGTTG+TGG | 0.508753 | 1.3:-72945314 | MS.gene91311:CDS |
ACCTCGAAAAGAATCTCAGC+CGG | 0.511024 | 1.3:+72947128 | None:intergenic |
CTGTTGAAACCAGCTTGTGC+TGG | 0.513392 | 1.3:+72945367 | None:intergenic |
TTGAATTTAAGTGTCAGGAA+AGG | 0.514898 | 1.3:-72945157 | MS.gene91311:CDS |
AATCTTGCTTACATGAGGTC+AGG | 0.523790 | 1.3:-72945639 | MS.gene91311:CDS |
GGTTCATCCCACATCCAAAT+GGG | 0.524124 | 1.3:+72946240 | None:intergenic |
AAAATGGCCTTGCAATCCTA+TGG | 0.528513 | 1.3:+72945677 | None:intergenic |
GTAGATATTTCATTACATCA+TGG | 0.536564 | 1.3:-72945229 | MS.gene91311:CDS |
TTTGCTGGTCCAGCACAAGC+TGG | 0.541008 | 1.3:-72945376 | MS.gene91311:CDS |
ATCTGGAAATGGAATAATTG+AGG | 0.541430 | 1.3:-72947535 | MS.gene91311:CDS |
AGGATTTGATCACAACATAG+AGG | 0.543988 | 1.3:-72947568 | MS.gene91311:CDS |
ACTGAAATGTTATTTGCCAT+AGG | 0.544070 | 1.3:-72945693 | MS.gene91311:CDS |
CCAAGACAACAACATTGAAA+GGG | 0.549553 | 1.3:-72946661 | MS.gene91311:intron |
CCTCGAAAAGAATCTCAGCC+GGG | 0.555600 | 1.3:+72947129 | None:intergenic |
TTATTTGCCATAGGATTGCA+AGG | 0.558146 | 1.3:-72945684 | MS.gene91311:CDS |
CCCAGAAAATGTTATGACCT+CGG | 0.560200 | 1.3:+72946048 | None:intergenic |
CAAACATTGACTACCAGGAA+TGG | 0.563798 | 1.3:-72946205 | MS.gene91311:CDS |
TGAGATAAGTAGAAGGAAAG+AGG | 0.565953 | 1.3:+72947870 | None:intergenic |
TGATTCTTGAATGGGGAAGT+GGG | 0.567685 | 1.3:-72945285 | MS.gene91311:CDS |
TTGATCACAACATAGAGGGT+TGG | 0.568919 | 1.3:-72947563 | MS.gene91311:CDS |
TCATGTAAGCAAGATTTGGC+TGG | 0.570296 | 1.3:+72945646 | None:intergenic |
ACAAAGGAGAATTGATAGCA+TGG | 0.571786 | 1.3:-72945929 | MS.gene91311:CDS |
CTTTCACTAATGAGATGAAG+TGG | 0.573436 | 1.3:-72946157 | MS.gene91311:CDS |
CAATATACCTGATTTGGCTG+AGG | 0.579698 | 1.3:+72945558 | None:intergenic |
CAAATTCTAACATTGCATCT+GGG | 0.582016 | 1.3:+72946093 | None:intergenic |
AGTTGCAAACTTCTCGAGCC+CGG | 0.584837 | 1.3:-72947147 | MS.gene91311:CDS |
TTGTCCACAACTTGTCCAGT+TGG | 0.589012 | 1.3:+72945310 | None:intergenic |
CAATGTTTGTGAGAATATGA+TGG | 0.591061 | 1.3:+72946219 | None:intergenic |
GGATTTGATCACAACATAGA+GGG | 0.591949 | 1.3:-72947567 | MS.gene91311:CDS |
TCTGTTGTTAAAAGGTACAA+AGG | 0.592676 | 1.3:-72945945 | MS.gene91311:CDS |
GCTTGGCTTCAGTTGAGTGA+AGG | 0.592889 | 1.3:-72947275 | MS.gene91311:CDS |
CCTCCATATTGTGCTCTCTG+AGG | 0.597382 | 1.3:+72947609 | None:intergenic |
TCTCACAAACATTGACTACC+AGG | 0.597515 | 1.3:-72946210 | MS.gene91311:CDS |
GATAATGGAATTTCTGTCCG+AGG | 0.602235 | 1.3:-72946065 | MS.gene91311:CDS |
CAAAGGAGAATTGATAGCAT+GGG | 0.602744 | 1.3:-72945928 | MS.gene91311:CDS |
TAATGCAAATGAAACAGCAT+CGG | 0.605090 | 1.3:-72946303 | MS.gene91311:CDS |
CAGAGAGCACAATATGGAGG+AGG | 0.606885 | 1.3:-72947606 | MS.gene91311:CDS |
GATAAGTAGAAGGAAAGAGG+TGG | 0.610537 | 1.3:+72947873 | None:intergenic |
ACTCTCATCCAGCAGTTCAA+GGG | 0.613025 | 1.3:-72945408 | MS.gene91311:CDS |
ATCCATGCTTTGCTATCACA+TGG | 0.619431 | 1.3:+72947195 | None:intergenic |
GCAGGCAGAGTACTTTGAAG+AGG | 0.621359 | 1.3:-72945446 | MS.gene91311:intron |
AGTTGTGATAACACAAACAA+AGG | 0.625979 | 1.3:-72946270 | MS.gene91311:CDS |
AGCCAAATCTTGCTTACATG+AGG | 0.629685 | 1.3:-72945644 | MS.gene91311:CDS |
GCAAATGAAACAGCATCGGA+AGG | 0.632167 | 1.3:-72946299 | MS.gene91311:CDS |
GGAGGCATTATAGTAAACTC+AGG | 0.632520 | 1.3:-72947588 | MS.gene91311:CDS |
GACAATTTGATTCTTGAATG+GGG | 0.637575 | 1.3:-72945292 | MS.gene91311:CDS |
GGCCATGTGATAGCAAAGCA+TGG | 0.645129 | 1.3:-72947197 | MS.gene91311:CDS |
ACAGCCAAAGCAGATAGTAG+AGG | 0.647030 | 1.3:-72945256 | MS.gene91311:CDS |
GAGGAACGTATATCAAATGG+TGG | 0.659694 | 1.3:-72947516 | MS.gene91311:CDS |
GCAGAGCAATAATCCAAGTG+TGG | 0.666015 | 1.3:-72946742 | MS.gene91311:intron |
TGATAGCAAAGCATGGATGT+TGG | 0.670562 | 1.3:-72947190 | MS.gene91311:CDS |
CCTCAGAGAGCACAATATGG+AGG | 0.677720 | 1.3:-72947609 | MS.gene91311:CDS |
AATGGAAGTGAACTTGTGCA+TGG | 0.692631 | 1.3:-72947221 | MS.gene91311:CDS |
GGAAGTGAACTTGTGCATGG+TGG | 0.735930 | 1.3:-72947218 | MS.gene91311:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATTTTGTTACAATTTTTT+TGG | + | chr1.3:72946610-72946629 | None:intergenic | 10.0% |
!! | AAGAAATACTAAAATTAGAA+CGG | - | chr1.3:72946497-72946516 | MS.gene91311:intron | 15.0% |
!! | TATAATACTATTGAATATAG+TGG | - | chr1.3:72947247-72947266 | MS.gene91311:CDS | 15.0% |
!! | TGTTATGTAACAAAAAAAAT+TGG | - | chr1.3:72946239-72946258 | MS.gene91311:CDS | 15.0% |
!!! | ATTTCTTTTGAGTATAAAAT+TGG | + | chr1.3:72946484-72946503 | None:intergenic | 15.0% |
!! | AAAAATTGAATTTAAGTGTC+AGG | - | chr1.3:72947868-72947887 | MS.gene91311:intron | 20.0% |
!! | ATTTATAGGGACTAAATATA+GGG | - | chr1.3:72946015-72946034 | MS.gene91311:CDS | 20.0% |
!!! | AATTCAATTTTTTGGAGTAA+TGG | + | chr1.3:72947860-72947879 | None:intergenic | 20.0% |
!!! | AGAATTTTACATGTACTTTT+TGG | - | chr1.3:72946156-72946175 | MS.gene91311:CDS | 20.0% |
!!! | AGTCCTTATTTTTCATTTAT+AGG | - | chr1.3:72946001-72946020 | MS.gene91311:CDS | 20.0% |
!!! | ATTAGATAGTTTTTCACAAA+CGG | - | chr1.3:72945573-72945592 | MS.gene91311:CDS | 20.0% |
!!! | GACACTTAAATTCAATTTTT+TGG | + | chr1.3:72947868-72947887 | None:intergenic | 20.0% |
!!! | GGGATAAATATATTTTCAAT+CGG | + | chr1.3:72946097-72946116 | None:intergenic | 20.0% |
!!! | GTCCTTATTTTTCATTTATA+GGG | - | chr1.3:72946002-72946021 | MS.gene91311:CDS | 20.0% |
!!! | TCTGTTGTATTTAAAACAAA+TGG | - | chr1.3:72945791-72945810 | MS.gene91311:CDS | 20.0% |
!!! | TTAGAATTTGCTAAAGATAA+TGG | - | chr1.3:72946950-72946969 | MS.gene91311:intron | 20.0% |
!!! | TTCATAAACAATGTTGTTTT+TGG | + | chr1.3:72947223-72947242 | None:intergenic | 20.0% |
! | AACCATTTACTAAAAAGGAA+TGG | - | chr1.3:72946338-72946357 | MS.gene91311:CDS | 25.0% |
! | ATAAGAATTCAGAAACAACA+AGG | + | chr1.3:72946206-72946225 | None:intergenic | 25.0% |
! | ATGAAAAATATCAACCTGAA+TGG | - | chr1.3:72947008-72947027 | MS.gene91311:intron | 25.0% |
! | CATTTATAGGGACTAAATAT+AGG | - | chr1.3:72946014-72946033 | MS.gene91311:CDS | 25.0% |
! | GAATTGAATCTGTTGTTAAA+AGG | - | chr1.3:72947077-72947096 | MS.gene91311:intron | 25.0% |
! | GTAATATTGGATTTCCAATA+TGG | - | chr1.3:72947428-72947447 | MS.gene91311:CDS | 25.0% |
! | GTAGATATTTCATTACATCA+TGG | - | chr1.3:72947801-72947820 | MS.gene91311:intron | 25.0% |
! | GTCCCTATAAATGAAAAATA+AGG | + | chr1.3:72946007-72946026 | None:intergenic | 25.0% |
! | TATCCTCATAAAAGTGAAAA+TGG | + | chr1.3:72947147-72947166 | None:intergenic | 25.0% |
! | TGAAAAATATCAACCTGAAT+GGG | - | chr1.3:72947009-72947028 | MS.gene91311:intron | 25.0% |
! | TTTCATTTGCATTACTTACA+TGG | + | chr1.3:72946721-72946740 | None:intergenic | 25.0% |
!! | AGTCTTGATTTATAACTTGT+AGG | - | chr1.3:72946673-72946692 | MS.gene91311:CDS | 25.0% |
!! | TCCTTTTTACAAATCAATAC+TGG | + | chr1.3:72946644-72946663 | None:intergenic | 25.0% |
!!! | ACCAGTATTGATTTGTAAAA+AGG | - | chr1.3:72946640-72946659 | MS.gene91311:intron | 25.0% |
!!! | AGATTCAATTCTTTTTTTCG+CGG | + | chr1.3:72947068-72947087 | None:intergenic | 25.0% |
!!! | CTAGATTTTCTTGGTAATAT+TGG | - | chr1.3:72947415-72947434 | MS.gene91311:intron | 25.0% |
!!! | TAAAATTGGTTTGCTTACTA+TGG | + | chr1.3:72946470-72946489 | None:intergenic | 25.0% |
!!! | TCAAGTTTTTTGAGATAGTT+GGG | + | chr1.3:72947292-72947311 | None:intergenic | 25.0% |
!!! | TCATACACTGTTTTATTTCA+AGG | + | chr1.3:72945396-72945415 | None:intergenic | 25.0% |
!!! | TGATTATTTTGCTACTATTG+AGG | - | chr1.3:72945286-72945305 | MS.gene91311:CDS | 25.0% |
AGGAATCAATATACCTGATT+TGG | + | chr1.3:72947481-72947500 | None:intergenic | 30.0% | |
AGTTGTGATAACACAAACAA+AGG | - | chr1.3:72946760-72946779 | MS.gene91311:intron | 30.0% | |
ATAATCCAAGTGTGGAAATA+TGG | - | chr1.3:72946296-72946315 | MS.gene91311:CDS | 30.0% | |
ATCTGGAAATGGAATAATTG+AGG | - | chr1.3:72945495-72945514 | MS.gene91311:intron | 30.0% | |
ATCTTCACAACATATATGCA+GGG | - | chr1.3:72945240-72945259 | MS.gene91311:CDS | 30.0% | |
ATTGAGGAACGTATATCAAA+TGG | - | chr1.3:72945511-72945530 | MS.gene91311:intron | 30.0% | |
CAAATTCTAACATTGCATCT+GGG | + | chr1.3:72946940-72946959 | None:intergenic | 30.0% | |
CAACTATCTCAAAAAACTTG+AGG | - | chr1.3:72947291-72947310 | MS.gene91311:intron | 30.0% | |
CAATGTTTGTGAGAATATGA+TGG | + | chr1.3:72946814-72946833 | None:intergenic | 30.0% | |
CATACTTCGTACAAATAACA+TGG | - | chr1.3:72946581-72946600 | MS.gene91311:intron | 30.0% | |
CTTGCAACCATTTACTAAAA+AGG | - | chr1.3:72946333-72946352 | MS.gene91311:CDS | 30.0% | |
CTTGCTTCTATAAAAGAGAA+GGG | + | chr1.3:72946117-72946136 | None:intergenic | 30.0% | |
GACAATTTGATTCTTGAATG+GGG | - | chr1.3:72947738-72947757 | MS.gene91311:intron | 30.0% | |
GATAAATACTTAACCCATTC+AGG | + | chr1.3:72947025-72947044 | None:intergenic | 30.0% | |
GGACAATTTGATTCTTGAAT+GGG | - | chr1.3:72947737-72947756 | MS.gene91311:intron | 30.0% | |
TAATCCAAGTGTGGAAATAT+GGG | - | chr1.3:72946297-72946316 | MS.gene91311:CDS | 30.0% | |
TAATGCAAATGAAACAGCAT+CGG | - | chr1.3:72946727-72946746 | MS.gene91311:CDS | 30.0% | |
TATAGTACAGAGAAAATTCC+AGG | - | chr1.3:72946896-72946915 | MS.gene91311:intron | 30.0% | |
TATCTTCACAACATATATGC+AGG | - | chr1.3:72945239-72945258 | MS.gene91311:CDS | 30.0% | |
TCTTGCTTCTATAAAAGAGA+AGG | + | chr1.3:72946118-72946137 | None:intergenic | 30.0% | |
TGAATTTAAGTGTCAGGAAA+GGG | - | chr1.3:72947874-72947893 | MS.gene91311:CDS | 30.0% | |
TGGACAATTTGATTCTTGAA+TGG | - | chr1.3:72947736-72947755 | MS.gene91311:intron | 30.0% | |
TTGAATTTAAGTGTCAGGAA+AGG | - | chr1.3:72947873-72947892 | MS.gene91311:CDS | 30.0% | |
TTTGTAATACTACCAACTTG+AGG | - | chr1.3:72946436-72946455 | MS.gene91311:intron | 30.0% | |
! | ACTGAAATGTTATTTGCCAT+AGG | - | chr1.3:72947337-72947356 | MS.gene91311:intron | 30.0% |
! | CACTTTTATGAGGATAAACT+AGG | - | chr1.3:72947151-72947170 | MS.gene91311:CDS | 30.0% |
! | CGGCTTAAAATTACATGTTT+TGG | + | chr1.3:72946077-72946096 | None:intergenic | 30.0% |
! | TCTGTTGTTAAAAGGTACAA+AGG | - | chr1.3:72947085-72947104 | MS.gene91311:intron | 30.0% |
!! | CTCCATTCCTTTTTAGTAAA+TGG | + | chr1.3:72946343-72946362 | None:intergenic | 30.0% |
!! | CTTTTTAGTAAATGGTTGCA+AGG | + | chr1.3:72946335-72946354 | None:intergenic | 30.0% |
!! | GTGATTCTTATTTGTTATGC+AGG | - | chr1.3:72947566-72947585 | MS.gene91311:CDS | 30.0% |
!! | TGTCCATTTTCACTTTTATG+AGG | - | chr1.3:72947141-72947160 | MS.gene91311:CDS | 30.0% |
!! | TTTTATTTCCACATTCAGCT+TGG | - | chr1.3:72945738-72945757 | MS.gene91311:CDS | 30.0% |
!!! | ACTGTTTTATTTCAAGGCAT+TGG | + | chr1.3:72945390-72945409 | None:intergenic | 30.0% |
!!! | CTCAAGTTTTTTGAGATAGT+TGG | + | chr1.3:72947293-72947312 | None:intergenic | 30.0% |
!!! | GGATTGATATACACTTTTTC+AGG | - | chr1.3:72945610-72945629 | MS.gene91311:CDS | 30.0% |
!!! | TTTTTGGAGTAATGGTTTGA+AGG | + | chr1.3:72947852-72947871 | None:intergenic | 30.0% |
AATTCCTCTACTATCTGCTT+TGG | + | chr1.3:72947781-72947800 | None:intergenic | 35.0% | |
AATTTCCAAACTACTCCAAC+TGG | - | chr1.3:72947705-72947724 | MS.gene91311:intron | 35.0% | |
ACCAAGACAACAACATTGAA+AGG | - | chr1.3:72946368-72946387 | MS.gene91311:intron | 35.0% | |
AGAAACCTGAGATAAGTAGA+AGG | + | chr1.3:72945170-72945189 | None:intergenic | 35.0% | |
AGGATTTGATCACAACATAG+AGG | - | chr1.3:72945462-72945481 | MS.gene91311:intron | 35.0% | |
ATTATAATCCCTTGAACTGC+TGG | + | chr1.3:72947633-72947652 | None:intergenic | 35.0% | |
CAAGGGATTATAATGTTTGC+TGG | - | chr1.3:72947639-72947658 | MS.gene91311:intron | 35.0% | |
CCAAGACAACAACATTGAAA+GGG | - | chr1.3:72946369-72946388 | MS.gene91311:intron | 35.0% | |
CTTTCACTAATGAGATGAAG+TGG | - | chr1.3:72946873-72946892 | MS.gene91311:intron | 35.0% | |
GCAAATTCTAACATTGCATC+TGG | + | chr1.3:72946941-72946960 | None:intergenic | 35.0% | |
GGATTTGATCACAACATAGA+GGG | - | chr1.3:72945463-72945482 | MS.gene91311:intron | 35.0% | |
TAGAACGGATAATAAAGACG+TGG | - | chr1.3:72946512-72946531 | MS.gene91311:intron | 35.0% | |
TCTTTCCTTCTACTTATCTC+AGG | - | chr1.3:72945162-72945181 | MS.gene91311:CDS | 35.0% | |
TGAGATAAGTAGAAGGAAAG+AGG | + | chr1.3:72945163-72945182 | None:intergenic | 35.0% | |
TTATTTGCCATAGGATTGCA+AGG | - | chr1.3:72947346-72947365 | MS.gene91311:intron | 35.0% | |
TTGTCGATGCATAAGTTTAG+TGG | + | chr1.3:72946553-72946572 | None:intergenic | 35.0% | |
! | ACAAAGGAGAATTGATAGCA+TGG | - | chr1.3:72947101-72947120 | MS.gene91311:intron | 35.0% |
! | ACCTTGTACTTTTCCTGAAT+CGG | - | chr1.3:72946179-72946198 | MS.gene91311:CDS | 35.0% |
! | ATGGATTTTGTTCCTCAAGT+TGG | + | chr1.3:72946451-72946470 | None:intergenic | 35.0% |
! | CAAAGGAGAATTGATAGCAT+GGG | - | chr1.3:72947102-72947121 | MS.gene91311:intron | 35.0% |
! | GTAGCACTGAATTATAGAGA+GGG | + | chr1.3:72945199-72945218 | None:intergenic | 35.0% |
! | TGTAGCACTGAATTATAGAG+AGG | + | chr1.3:72945200-72945219 | None:intergenic | 35.0% |
!! | GAGATTCTTTTCGAGGTTAA+CGG | - | chr1.3:72945908-72945927 | MS.gene91311:CDS | 35.0% |
!! | GGATGTTGGTCTCTTTTAAA+AGG | - | chr1.3:72945854-72945873 | MS.gene91311:CDS | 35.0% |
!! | TCATTTTACGTTTGAAGTCG+AGG | + | chr1.3:72947501-72947520 | None:intergenic | 35.0% |
!! | TGTTGGTCTCTTTTAAAAGG+CGG | - | chr1.3:72945857-72945876 | MS.gene91311:CDS | 35.0% |
!!! | AGTTTTTTGAGATAGTTGGG+TGG | + | chr1.3:72947289-72947308 | None:intergenic | 35.0% |
!!! | GTTTTTTGAGATAGTTGGGT+GGG | + | chr1.3:72947288-72947307 | None:intergenic | 35.0% |
AATCTTGCTTACATGAGGTC+AGG | - | chr1.3:72947391-72947410 | MS.gene91311:intron | 40.0% | |
AATGGAAGTGAACTTGTGCA+TGG | - | chr1.3:72945809-72945828 | MS.gene91311:CDS | 40.0% | |
ACAAAGGCAGATTTCCCATT+TGG | - | chr1.3:72946776-72946795 | MS.gene91311:intron | 40.0% | |
ACGGATAATAAAGACGTGGT+TGG | - | chr1.3:72946516-72946535 | MS.gene91311:intron | 40.0% | |
AGCCAAATCTTGCTTACATG+AGG | - | chr1.3:72947386-72947405 | MS.gene91311:intron | 40.0% | |
ATCTTGACACAAACCATTCC+TGG | + | chr1.3:72946841-72946860 | None:intergenic | 40.0% | |
CAGATTTCCCATTTGGATGT+GGG | - | chr1.3:72946783-72946802 | MS.gene91311:intron | 40.0% | |
CCCAGAAAATGTTATGACCT+CGG | + | chr1.3:72946985-72947004 | None:intergenic | 40.0% | |
CCCTTTCAATGTTGTTGTCT+TGG | + | chr1.3:72946372-72946391 | None:intergenic | 40.0% | |
CGGATAATAAAGACGTGGTT+GGG | - | chr1.3:72946517-72946536 | MS.gene91311:intron | 40.0% | |
CTATCTGCTTTGGCTGTATA+AGG | + | chr1.3:72947771-72947790 | None:intergenic | 40.0% | |
CTTGAGGAGATTATGCAATC+TGG | - | chr1.3:72947307-72947326 | MS.gene91311:intron | 40.0% | |
GACCTCATGTAAGCAAGATT+TGG | + | chr1.3:72947391-72947410 | None:intergenic | 40.0% | |
GAGGAACGTATATCAAATGG+TGG | - | chr1.3:72945514-72945533 | MS.gene91311:intron | 40.0% | |
GATAAGTAGAAGGAAAGAGG+TGG | + | chr1.3:72945160-72945179 | None:intergenic | 40.0% | |
TCATGTAAGCAAGATTTGGC+TGG | + | chr1.3:72947387-72947406 | None:intergenic | 40.0% | |
TGATAGCAAAGCATGGATGT+TGG | - | chr1.3:72945840-72945859 | MS.gene91311:CDS | 40.0% | |
TGATTCTTGAATGGGGAAGT+GGG | - | chr1.3:72947745-72947764 | MS.gene91311:CDS | 40.0% | |
TTGATCACAACATAGAGGGT+TGG | - | chr1.3:72945467-72945486 | MS.gene91311:intron | 40.0% | |
TTGATTCTTGAATGGGGAAG+TGG | - | chr1.3:72947744-72947763 | MS.gene91311:intron | 40.0% | |
! | AAAATGGCCTTGCAATCCTA+TGG | + | chr1.3:72947356-72947375 | None:intergenic | 40.0% |
! | ACCGATTCAGGAAAAGTACA+AGG | + | chr1.3:72946183-72946202 | None:intergenic | 40.0% |
! | AGGTCAGGTCTAGATTTTCT+TGG | - | chr1.3:72947406-72947425 | MS.gene91311:intron | 40.0% |
! | ATAGTGTAGTTTTCTTGGCC+TGG | + | chr1.3:72946917-72946936 | None:intergenic | 40.0% |
! | ATCCATGCTTTGCTATCACA+TGG | + | chr1.3:72945838-72945857 | None:intergenic | 40.0% |
! | ATGTTTTCGCAGTTACACGA+AGG | - | chr1.3:72947530-72947549 | MS.gene91311:CDS | 40.0% |
! | CAAACATTGACTACCAGGAA+TGG | - | chr1.3:72946825-72946844 | MS.gene91311:intron | 40.0% |
! | CCGAGGTCATAACATTTTCT+GGG | - | chr1.3:72946982-72947001 | MS.gene91311:intron | 40.0% |
! | CTGGGATAGTGTAGTTTTCT+TGG | + | chr1.3:72946922-72946941 | None:intergenic | 40.0% |
! | TCCGAGGTCATAACATTTTC+TGG | - | chr1.3:72946981-72947000 | MS.gene91311:intron | 40.0% |
! | TCTCACAAACATTGACTACC+AGG | - | chr1.3:72946820-72946839 | MS.gene91311:intron | 40.0% |
!! | CAATATACCTGATTTGGCTG+AGG | + | chr1.3:72947475-72947494 | None:intergenic | 40.0% |
!! | GATAATGGAATTTCTGTCCG+AGG | - | chr1.3:72946965-72946984 | MS.gene91311:intron | 40.0% |
!! | GGAGGCATTATAGTAAACTC+AGG | - | chr1.3:72945442-72945461 | MS.gene91311:CDS | 40.0% |
AACTGAAGCCAAGCTGAATG+TGG | + | chr1.3:72945749-72945768 | None:intergenic | 45.0% | |
AATAAAGACGTGGTTGGGAG+TGG | - | chr1.3:72946522-72946541 | MS.gene91311:intron | 45.0% | |
ACAGCCAAAGCAGATAGTAG+AGG | - | chr1.3:72947774-72947793 | MS.gene91311:intron | 45.0% | |
ACCTCGAAAAGAATCTCAGC+CGG | + | chr1.3:72945905-72945924 | None:intergenic | 45.0% | |
ACTCTCATCCAGCAGTTCAA+GGG | - | chr1.3:72947622-72947641 | MS.gene91311:CDS | 45.0% | |
ATAGAGGGTTGGACAGTATC+TGG | - | chr1.3:72945478-72945497 | MS.gene91311:intron | 45.0% | |
ATTTGGCTGAGGATCCAAAC+TGG | + | chr1.3:72947464-72947483 | None:intergenic | 45.0% | |
CAAACGGTTCAGCTAGAGAA+AGG | - | chr1.3:72945589-72945608 | MS.gene91311:CDS | 45.0% | |
CACAACATATATGCAGGGCT+AGG | - | chr1.3:72945245-72945264 | MS.gene91311:CDS | 45.0% | |
CTTGTCCAGTTGGAGTAGTT+TGG | + | chr1.3:72947713-72947732 | None:intergenic | 45.0% | |
GCAGAGCAATAATCCAAGTG+TGG | - | chr1.3:72946288-72946307 | MS.gene91311:CDS | 45.0% | |
GCAGATTTCCCATTTGGATG+TGG | - | chr1.3:72946782-72946801 | MS.gene91311:intron | 45.0% | |
GGTTCATCCCACATCCAAAT+GGG | + | chr1.3:72946793-72946812 | None:intergenic | 45.0% | |
GGTTGGACAGTATCTGGAAA+TGG | - | chr1.3:72945484-72945503 | MS.gene91311:intron | 45.0% | |
TACTCCAACTGGACAAGTTG+TGG | - | chr1.3:72947716-72947735 | MS.gene91311:intron | 45.0% | |
TACTCTCATCCAGCAGTTCA+AGG | - | chr1.3:72947621-72947640 | MS.gene91311:CDS | 45.0% | |
TCAGCCCATATTTCCACACT+TGG | + | chr1.3:72946304-72946323 | None:intergenic | 45.0% | |
TGGTTCATCCCACATCCAAA+TGG | + | chr1.3:72946794-72946813 | None:intergenic | 45.0% | |
TTGTCCACAACTTGTCCAGT+TGG | + | chr1.3:72947723-72947742 | None:intergenic | 45.0% | |
TTTGGATCCTCAGCCAAATC+AGG | - | chr1.3:72947465-72947484 | MS.gene91311:CDS | 45.0% | |
! | GAAACAACAAGGACCGATTC+AGG | + | chr1.3:72946195-72946214 | None:intergenic | 45.0% |
! | GAACCTCAGAGAGCACAATA+TGG | - | chr1.3:72945418-72945437 | MS.gene91311:CDS | 45.0% |
! | GCAAATGAAACAGCATCGGA+AGG | - | chr1.3:72946731-72946750 | MS.gene91311:CDS | 45.0% |
! | TGTCAGGAAAGGGTTTTCAC+AGG | - | chr1.3:72947884-72947903 | MS.gene91311:CDS | 45.0% |
!! | TTGCAAGGCCATTTTGCAAG+TGG | - | chr1.3:72947361-72947380 | MS.gene91311:intron | 45.0% |
!! | TTATGATTATTAATTTAATA+TGG | - | chr1.3:72945326-72945345 | MS.gene91311:CDS | 5.0% |
AGGGCTAGGCGTTCATTCTT+TGG | - | chr1.3:72945259-72945278 | MS.gene91311:CDS | 50.0% | |
AGTTGCAAACTTCTCGAGCC+CGG | - | chr1.3:72945883-72945902 | MS.gene91311:CDS | 50.0% | |
ATGGCTCACAGAAGCCAGTT+TGG | - | chr1.3:72947447-72947466 | MS.gene91311:CDS | 50.0% | |
CCTCCATATTGTGCTCTCTG+AGG | + | chr1.3:72945424-72945443 | None:intergenic | 50.0% | |
CCTCGAAAAGAATCTCAGCC+GGG | + | chr1.3:72945904-72945923 | None:intergenic | 50.0% | |
CGCGGCTTTGCGCAATTTAT+CGG | + | chr1.3:72947050-72947069 | None:intergenic | 50.0% | |
CTGGCTTCTGTGAGCCATAT+TGG | + | chr1.3:72947445-72947464 | None:intergenic | 50.0% | |
CTGTTGAAACCAGCTTGTGC+TGG | + | chr1.3:72947666-72947685 | None:intergenic | 50.0% | |
GCGGCTTTGCGCAATTTATC+GGG | + | chr1.3:72947049-72947068 | None:intergenic | 50.0% | |
GCTTGGCTTCAGTTGAGTGA+AGG | - | chr1.3:72945755-72945774 | MS.gene91311:CDS | 50.0% | |
GGAAGTGAACTTGTGCATGG+TGG | - | chr1.3:72945812-72945831 | MS.gene91311:CDS | 50.0% | |
GGCCATGTGATAGCAAAGCA+TGG | - | chr1.3:72945833-72945852 | MS.gene91311:CDS | 50.0% | |
! | CAGAGAGCACAATATGGAGG+AGG | - | chr1.3:72945424-72945443 | MS.gene91311:CDS | 50.0% |
! | CCTCAGAGAGCACAATATGG+AGG | - | chr1.3:72945421-72945440 | MS.gene91311:CDS | 50.0% |
! | GCAGGCAGAGTACTTTGAAG+AGG | - | chr1.3:72947584-72947603 | MS.gene91311:CDS | 50.0% |
! | TTGGCTGGCCACTTGCAAAA+TGG | + | chr1.3:72947372-72947391 | None:intergenic | 50.0% |
!! | CAAGGCATTGGCAACACAAG+TGG | + | chr1.3:72945378-72945397 | None:intergenic | 50.0% |
TTTGCTGGTCCAGCACAAGC+TGG | - | chr1.3:72947654-72947673 | MS.gene91311:intron | 55.0% | |
! | CCCGGCTGAGATTCTTTTCG+AGG | - | chr1.3:72945901-72945920 | MS.gene91311:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 72945117 | 72947935 | 72945117 | ID=MS.gene91311 |
chr1.3 | mRNA | 72945117 | 72947935 | 72945117 | ID=MS.gene91311.t1;Parent=MS.gene91311 |
chr1.3 | exon | 72947869 | 72947935 | 72947869 | ID=MS.gene91311.t1.exon1;Parent=MS.gene91311.t1 |
chr1.3 | CDS | 72947869 | 72947935 | 72947869 | ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1 |
chr1.3 | exon | 72947745 | 72947791 | 72947745 | ID=MS.gene91311.t1.exon2;Parent=MS.gene91311.t1 |
chr1.3 | CDS | 72947745 | 72947791 | 72947745 | ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1 |
chr1.3 | exon | 72947421 | 72947643 | 72947421 | ID=MS.gene91311.t1.exon3;Parent=MS.gene91311.t1 |
chr1.3 | CDS | 72947421 | 72947643 | 72947421 | ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1 |
chr1.3 | exon | 72947130 | 72947296 | 72947130 | ID=MS.gene91311.t1.exon4;Parent=MS.gene91311.t1 |
chr1.3 | CDS | 72947130 | 72947296 | 72947130 | ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1 |
chr1.3 | exon | 72946662 | 72946760 | 72946662 | ID=MS.gene91311.t1.exon5;Parent=MS.gene91311.t1 |
chr1.3 | CDS | 72946662 | 72946760 | 72946662 | ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1 |
chr1.3 | exon | 72945566 | 72946357 | 72945566 | ID=MS.gene91311.t1.exon6;Parent=MS.gene91311.t1 |
chr1.3 | CDS | 72945566 | 72946357 | 72945566 | ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1 |
chr1.3 | exon | 72945117 | 72945464 | 72945117 | ID=MS.gene91311.t1.exon7;Parent=MS.gene91311.t1 |
chr1.3 | CDS | 72945117 | 72945464 | 72945117 | ID=cds.MS.gene91311.t1;Parent=MS.gene91311.t1 |
Gene Sequence |
Protein sequence |