Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91399.t1 | XP_024626385.1 | 100 | 96 | 0 | 0 | 1 | 96 | 1 | 96 | 4.00E-51 | 210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91399.t1 | O70333 | 67.3 | 101 | 28 | 3 | 1 | 96 | 1 | 101 | 2.1e-32 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91399.t1 | A0A396K208 | 100.0 | 96 | 0 | 0 | 1 | 96 | 1 | 96 | 2.8e-51 | 210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050320 | MS.gene91399 | 0.803159 | 3.98E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene91399 | 0.8113 | 7.50E-51 | -1.69E-46 |
| MS.gene056403 | MS.gene91399 | 0.801868 | 7.35E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene91399 | 0.818798 | 1.62E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91399.t1 | AT1G61780 | 88.776 | 98 | 9 | 1 | 1 | 96 | 1 | 98 | 7.45e-60 | 178 |
Find 21 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGGAACCTGTTCTTCT+TGG | 0.284589 | 1.3:-71917687 | None:intergenic |
| GCACCTTCTTTCCATTTGTC+TGG | 0.356085 | 1.3:-71917611 | None:intergenic |
| AACTCCTTTCCAAGAAGAAC+AGG | 0.405714 | 1.3:+71917678 | MS.gene91399:CDS |
| CCTTGCAGATGGACCCCTTA+CGG | 0.442126 | 1.3:+71920359 | MS.gene91399:intron |
| ATTGCTTTGTTTATAAAACT+TGG | 0.455004 | 1.3:-71920585 | None:intergenic |
| AGGTGATAGTACCAGACAAA+TGG | 0.467879 | 1.3:+71917600 | MS.gene91399:CDS |
| CACACGTGTGCTTACTCAAA+AGG | 0.468563 | 1.3:+71920437 | MS.gene91399:CDS |
| TGCACTTAGTTGTTCCGTAA+GGG | 0.517165 | 1.3:-71920373 | None:intergenic |
| TTGCAAGCAGCAAGTGCACC+AGG | 0.519611 | 1.3:+71920400 | MS.gene91399:CDS |
| ATGCACTTAGTTGTTCCGTA+AGG | 0.525449 | 1.3:-71920374 | None:intergenic |
| GGAACCTGTTCTTCTTGGAA+AGG | 0.539127 | 1.3:-71917682 | None:intergenic |
| TGTGACAGTACTTGCCATCC+TGG | 0.544753 | 1.3:-71920418 | None:intergenic |
| GCACTTAGTTGTTCCGTAAG+GGG | 0.546613 | 1.3:-71920372 | None:intergenic |
| ATAAACAAAGCAATGTGTAG+TGG | 0.551489 | 1.3:+71920594 | MS.gene91399:CDS |
| GTACCAGACAAATGGAAAGA+AGG | 0.553949 | 1.3:+71917608 | MS.gene91399:CDS |
| AGGTCAGAAGAAATTATCGA+AGG | 0.591221 | 1.3:+71917580 | MS.gene91399:intron |
| GGTGCAAGCAATACTACTGA+AGG | 0.608421 | 1.3:+71917629 | MS.gene91399:CDS |
| GCAGGGGTCTGTGCGATGTG+TGG | 0.611108 | 1.3:+71920545 | MS.gene91399:intron |
| AGCAATACTACTGAAGGCGG+TGG | 0.615667 | 1.3:+71917635 | MS.gene91399:CDS |
| AAGCAGCAAGTGCACCAGGA+TGG | 0.627659 | 1.3:+71920404 | MS.gene91399:CDS |
| GCAAGCAATACTACTGAAGG+CGG | 0.661649 | 1.3:+71917632 | MS.gene91399:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGAAATTAACAATTATTT+TGG | - | chr1.3:71918697-71918716 | None:intergenic | 10.0% |
| !! | AAAAACAAATAAGAAATTGA+AGG | - | chr1.3:71917721-71917740 | None:intergenic | 15.0% |
| !! | AAAAAGAAAACTTAAAAGTT+TGG | - | chr1.3:71919880-71919899 | None:intergenic | 15.0% |
| !! | AAAACAAATAAGAAATTGAA+GGG | - | chr1.3:71917720-71917739 | None:intergenic | 15.0% |
| !! | AAAAGAAAACTTAAAAGTTT+GGG | - | chr1.3:71919879-71919898 | None:intergenic | 15.0% |
| !! | AACAAGTTACAATATAAAAA+AGG | - | chr1.3:71920279-71920298 | None:intergenic | 15.0% |
| !! | TAAACAATTACAAAAAGTAA+TGG | - | chr1.3:71920201-71920220 | None:intergenic | 15.0% |
| !!! | ATATTCTTTGATTTCTTTTT+TGG | + | chr1.3:71919557-71919576 | MS.gene91399:intron | 15.0% |
| !! | AAATATTTGACATGTGAAAT+TGG | - | chr1.3:71918869-71918888 | None:intergenic | 20.0% |
| !! | AACTAAGAAACAAATTATGA+AGG | - | chr1.3:71917749-71917768 | None:intergenic | 20.0% |
| !! | AACTAGAAAATTACAGAATA+TGG | - | chr1.3:71918742-71918761 | None:intergenic | 20.0% |
| !! | AATGACTATTAGTATTAGTA+TGG | + | chr1.3:71920073-71920092 | MS.gene91399:intron | 20.0% |
| !! | AATTGTTAATTTCAATAGCT+GGG | + | chr1.3:71918701-71918720 | MS.gene91399:intron | 20.0% |
| !! | ACTAGAAAATTACAGAATAT+GGG | - | chr1.3:71918741-71918760 | None:intergenic | 20.0% |
| !! | ACTAGAAATATTGAAGAAAA+AGG | - | chr1.3:71917513-71917532 | None:intergenic | 20.0% |
| !! | CAAAGTCTATTTATTTGTTT+AGG | - | chr1.3:71917997-71918016 | None:intergenic | 20.0% |
| !! | TAATTGTTAATTTCAATAGC+TGG | + | chr1.3:71918700-71918719 | MS.gene91399:intron | 20.0% |
| !! | TCTATCATTTACTTTGAATT+CGG | - | chr1.3:71918930-71918949 | None:intergenic | 20.0% |
| !!! | AATGTTATTTTTCTTTCAGA+TGG | - | chr1.3:71919183-71919202 | None:intergenic | 20.0% |
| !!! | ATTGCTTTGTTTATAAAACT+TGG | - | chr1.3:71920588-71920607 | None:intergenic | 20.0% |
| !!! | GAAAATTCAATTGATCTTTT+TGG | + | chr1.3:71917537-71917556 | MS.gene91399:intron | 20.0% |
| !!! | TAATTTTGGATTTCAGTTAA+TGG | - | chr1.3:71918998-71919017 | None:intergenic | 20.0% |
| !!! | TTGTTTCTTAGTTTTTAAGT+AGG | + | chr1.3:71917756-71917775 | MS.gene91399:intron | 20.0% |
| !!! | TTTAAACTTACTCTTTTGTA+GGG | + | chr1.3:71918134-71918153 | MS.gene91399:intron | 20.0% |
| ! | AAAAAAAAACTGAATTGTCG+AGG | - | chr1.3:71919851-71919870 | None:intergenic | 25.0% |
| ! | AAAAAAAACTGAATTGTCGA+GGG | - | chr1.3:71919850-71919869 | None:intergenic | 25.0% |
| ! | AATAAGAAATTGAAGGGTTT+AGG | - | chr1.3:71917714-71917733 | None:intergenic | 25.0% |
| ! | AATTGGAAATAGATAACACT+AGG | + | chr1.3:71918313-71918332 | MS.gene91399:intron | 25.0% |
| ! | ACTAAGTTCAAATGGAAAAT+TGG | + | chr1.3:71918296-71918315 | MS.gene91399:intron | 25.0% |
| ! | ATAGATACAATGAATTCACT+AGG | + | chr1.3:71919242-71919261 | MS.gene91399:intron | 25.0% |
| ! | ATGGAAAAACTAAGTTCAAA+TGG | + | chr1.3:71918288-71918307 | MS.gene91399:intron | 25.0% |
| ! | ATTAGAAAACCATTTACCAA+TGG | + | chr1.3:71919014-71919033 | MS.gene91399:intron | 25.0% |
| ! | CTAGAAAATTACAGAATATG+GGG | - | chr1.3:71918740-71918759 | None:intergenic | 25.0% |
| ! | CTATCATTTACTTTGAATTC+GGG | - | chr1.3:71918929-71918948 | None:intergenic | 25.0% |
| ! | GTCATTTAAACAAAAGATCA+AGG | - | chr1.3:71920246-71920265 | None:intergenic | 25.0% |
| ! | TATTGACAATGGAATTGATA+AGG | + | chr1.3:71918165-71918184 | MS.gene91399:intron | 25.0% |
| ! | TCAAAGTAAAGTCAACAAAT+TGG | - | chr1.3:71919505-71919524 | None:intergenic | 25.0% |
| ! | TTGACTTTACTTTGATGAAT+TGG | + | chr1.3:71919510-71919529 | MS.gene91399:intron | 25.0% |
| ! | TTTAATTAATTCCTTGCAGA+TGG | + | chr1.3:71920348-71920367 | MS.gene91399:intron | 25.0% |
| ! | TTTCAATAGTAGGTTTGATA+TGG | + | chr1.3:71919590-71919609 | MS.gene91399:intron | 25.0% |
| !! | ATATCTTTGGTGTATATATG+TGG | + | chr1.3:71919961-71919980 | MS.gene91399:intron | 25.0% |
| !! | CTTTAAACTTACTCTTTTGT+AGG | + | chr1.3:71918133-71918152 | MS.gene91399:intron | 25.0% |
| !! | GAAAGAAACCTAATGTTTTT+AGG | + | chr1.3:71919633-71919652 | MS.gene91399:intron | 25.0% |
| !! | GGTAAATGGTTTTCTAATTT+TGG | - | chr1.3:71919012-71919031 | None:intergenic | 25.0% |
| !! | TACTTCAAATTTGAGATACT+TGG | + | chr1.3:71917890-71917909 | MS.gene91399:intron | 25.0% |
| !!! | AAATCAAGTTTAACTTGACA+AGG | + | chr1.3:71918506-71918525 | MS.gene91399:intron | 25.0% |
| !!! | AATCAAGTTTAACTTGACAA+GGG | + | chr1.3:71918507-71918526 | MS.gene91399:intron | 25.0% |
| !!! | AGCTTTATTCCTTGAATTAT+TGG | + | chr1.3:71919450-71919469 | MS.gene91399:intron | 25.0% |
| !!! | CAAATATTTTTGAGAAAGCA+TGG | + | chr1.3:71918880-71918899 | MS.gene91399:intron | 25.0% |
| !!! | CAATTATTTTGGTACTTTGA+TGG | - | chr1.3:71918686-71918705 | None:intergenic | 25.0% |
| !!! | TCTGTAATTTTCTAGTTTAG+TGG | + | chr1.3:71918745-71918764 | MS.gene91399:intron | 25.0% |
| AAACTAGTAAGTAGCAATCA+TGG | - | chr1.3:71918970-71918989 | None:intergenic | 30.0% | |
| AAAGTCAACAAATTGGTTAG+AGG | - | chr1.3:71919498-71919517 | None:intergenic | 30.0% | |
| AACTACCACCTAAAAACATT+AGG | - | chr1.3:71919644-71919663 | None:intergenic | 30.0% | |
| AGTTAATTGGCATATAGCTT+GGG | - | chr1.3:71918635-71918654 | None:intergenic | 30.0% | |
| ATAAGTGCAGAACTAGTAAA+TGG | - | chr1.3:71920043-71920062 | None:intergenic | 30.0% | |
| ATGACTATCATGCAGTTAAT+TGG | - | chr1.3:71918648-71918667 | None:intergenic | 30.0% | |
| CTGTTCTTGGAAAATATCTT+TGG | + | chr1.3:71919948-71919967 | MS.gene91399:intron | 30.0% | |
| GAAAGTCATTTCTCAAACTA+AGG | - | chr1.3:71919109-71919128 | None:intergenic | 30.0% | |
| GTGAGAATGAGAAAGATAAA+AGG | - | chr1.3:71919131-71919150 | None:intergenic | 30.0% | |
| GTTATATACAGTGAATCACT+AGG | + | chr1.3:71918243-71918262 | MS.gene91399:intron | 30.0% | |
| TCGTAGTTGTATTGTTTCAT+TGG | - | chr1.3:71918215-71918234 | None:intergenic | 30.0% | |
| TCTCTGAACCTTCTATAAAA+GGG | - | chr1.3:71919420-71919439 | None:intergenic | 30.0% | |
| TCTGAACAAATAACATGAAC+AGG | - | chr1.3:71920171-71920190 | None:intergenic | 30.0% | |
| TGAACAAGTGAATCAAATGT+TGG | + | chr1.3:71919703-71919722 | MS.gene91399:intron | 30.0% | |
| TGAATTGGCAATTTCTCTAT+TGG | + | chr1.3:71919525-71919544 | MS.gene91399:intron | 30.0% | |
| ! | AGTTTTTCCATTCAACGAAT+TGG | - | chr1.3:71918279-71918298 | None:intergenic | 30.0% |
| ! | GATTTTAAATGGAGAGGTAA+TGG | - | chr1.3:71918416-71918435 | None:intergenic | 30.0% |
| ! | TGATTTGAATTCGTGGTTTT+AGG | + | chr1.3:71917560-71917579 | MS.gene91399:intron | 30.0% |
| ! | TTATCTAAAACACAACCTTG+AGG | - | chr1.3:71918447-71918466 | None:intergenic | 30.0% |
| !! | AAGGTTGATTTTAAATGGAG+AGG | - | chr1.3:71918422-71918441 | None:intergenic | 30.0% |
| !! | AGGACAAGGTTGATTTTAAA+TGG | - | chr1.3:71918427-71918446 | None:intergenic | 30.0% |
| !! | ATCAAGTTTAACTTGACAAG+GGG | + | chr1.3:71918508-71918527 | MS.gene91399:intron | 30.0% |
| !! | GATTAGTAGCTTTAACTTTC+CGG | + | chr1.3:71919064-71919083 | MS.gene91399:intron | 30.0% |
| !! | TTTTTGGTGATTTGAATTCG+TGG | + | chr1.3:71917553-71917572 | MS.gene91399:intron | 30.0% |
| !!! | AGAAACCTAATGTTTTTAGG+TGG | + | chr1.3:71919636-71919655 | MS.gene91399:intron | 30.0% |
| !!! | AGCAATGCTTTTTCAATAGT+AGG | + | chr1.3:71919580-71919599 | MS.gene91399:intron | 30.0% |
| !!! | ATTTTGATTGACACTGTTCT+TGG | + | chr1.3:71919935-71919954 | MS.gene91399:intron | 30.0% |
| !!! | CATTCTCACATTTTAACTTG+AGG | + | chr1.3:71919142-71919161 | MS.gene91399:intron | 30.0% |
| AAAACCATTTACCAATGGCA+AGG | + | chr1.3:71919019-71919038 | MS.gene91399:intron | 35.0% | |
| AGGGGTAATAAAAATTTCCC+TGG | + | chr1.3:71918526-71918545 | MS.gene91399:intron | 35.0% | |
| AGGTCAGAAGAAATTATCGA+AGG | + | chr1.3:71917580-71917599 | MS.gene91399:intron | 35.0% | |
| AGGTTTGATATGGTACTGTA+TGG | + | chr1.3:71919600-71919619 | MS.gene91399:intron | 35.0% | |
| CAACAAATTGGTTAGAGGAA+AGG | - | chr1.3:71919493-71919512 | None:intergenic | 35.0% | |
| CAGTTAATTGGCATATAGCT+TGG | - | chr1.3:71918636-71918655 | None:intergenic | 35.0% | |
| CTCTCTGAACCTTCTATAAA+AGG | - | chr1.3:71919421-71919440 | None:intergenic | 35.0% | |
| CTTGGGTTTGGAAAAATGTT+TGG | - | chr1.3:71918618-71918637 | None:intergenic | 35.0% | |
| GACATGTGAAATTGGAACAT+GGG | - | chr1.3:71918861-71918880 | None:intergenic | 35.0% | |
| GGGTTCGAAAATATTGACAA+TGG | + | chr1.3:71918154-71918173 | MS.gene91399:intron | 35.0% | |
| GTACATAACTCAATTCCTGA+TGG | + | chr1.3:71920512-71920531 | MS.gene91399:intron | 35.0% | |
| TAAAATCAACCTTGTCCTCA+AGG | + | chr1.3:71918429-71918448 | MS.gene91399:intron | 35.0% | |
| TAATACAGTAGTGAACCCAA+GGG | + | chr1.3:71919341-71919360 | MS.gene91399:intron | 35.0% | |
| TATACAGTGAATCACTAGGA+TGG | + | chr1.3:71918247-71918266 | MS.gene91399:intron | 35.0% | |
| TCACATGATGCAAAAATGCA+GGG | - | chr1.3:71920314-71920333 | None:intergenic | 35.0% | |
| TCAGCTGATCCAATAATTCA+AGG | - | chr1.3:71919462-71919481 | None:intergenic | 35.0% | |
| TCATTTACTTTGAATTCGGG+AGG | - | chr1.3:71918926-71918945 | None:intergenic | 35.0% | |
| TCTCTATCACCATTTGTACT+TGG | - | chr1.3:71919299-71919318 | None:intergenic | 35.0% | |
| TGACATGTGAAATTGGAACA+TGG | - | chr1.3:71918862-71918881 | None:intergenic | 35.0% | |
| TTCACATGATGCAAAAATGC+AGG | - | chr1.3:71920315-71920334 | None:intergenic | 35.0% | |
| TTCAGCCCTTACAATACAAA+TGG | - | chr1.3:71918558-71918577 | None:intergenic | 35.0% | |
| TTTGTATGCTGCAGTTTAGA+AGG | + | chr1.3:71918020-71918039 | MS.gene91399:intron | 35.0% | |
| ! | GCATATTTGGTCTCTGTTTT+GGG | + | chr1.3:71918049-71918068 | MS.gene91399:intron | 35.0% |
| ! | TCATTGCTCCCTTTTATAGA+AGG | + | chr1.3:71919409-71919428 | MS.gene91399:intron | 35.0% |
| ! | TGCATATTTGGTCTCTGTTT+TGG | + | chr1.3:71918048-71918067 | MS.gene91399:intron | 35.0% |
| ! | TGGCTTGACATTTTCTCTAT+TGG | + | chr1.3:71918383-71918402 | MS.gene91399:intron | 35.0% |
| !! | ATTGAAGGGTTTAGGTTGAA+AGG | - | chr1.3:71917706-71917725 | None:intergenic | 35.0% |
| !! | ATTTTTGAGAAAGCATGGCA+AGG | + | chr1.3:71918885-71918904 | MS.gene91399:intron | 35.0% |
| !! | CTTGATTTTAGATGCCACTT+TGG | - | chr1.3:71918494-71918513 | None:intergenic | 35.0% |
| !! | GTTTAGTGGATTTAGTTGCT+CGG | + | chr1.3:71918759-71918778 | MS.gene91399:intron | 35.0% |
| !! | TAGAAGGTGCTATGCATATT+TGG | + | chr1.3:71918036-71918055 | MS.gene91399:intron | 35.0% |
| !! | TTTAGTGGATTTAGTTGCTC+GGG | + | chr1.3:71918760-71918779 | MS.gene91399:intron | 35.0% |
| !! | TTTTAGGTGGTAGTTAGTGA+TGG | + | chr1.3:71919649-71919668 | MS.gene91399:intron | 35.0% |
| !! | TTTTTGAGAAAGCATGGCAA+GGG | + | chr1.3:71918886-71918905 | MS.gene91399:intron | 35.0% |
| !!! | GTTTGTTCTCGTTGATTTTG+CGG | - | chr1.3:71917661-71917680 | None:intergenic | 35.0% |
| AAAACACAACCTTGAGGACA+AGG | - | chr1.3:71918441-71918460 | None:intergenic | 40.0% | |
| AAAGGGAGCAATGATTGACA+TGG | - | chr1.3:71919403-71919422 | None:intergenic | 40.0% | |
| AAATCCTCTCATTCTCCCTT+GGG | - | chr1.3:71919359-71919378 | None:intergenic | 40.0% | |
| AACATCTCTCCAAACTGTCA+AGG | + | chr1.3:71920099-71920118 | MS.gene91399:intron | 40.0% | |
| AACCCAAAACCTTGACAGTT+TGG | - | chr1.3:71920111-71920130 | None:intergenic | 40.0% | |
| AACTCCTTTCCAAGAAGAAC+AGG | + | chr1.3:71917678-71917697 | MS.gene91399:CDS | 40.0% | |
| AAGTGACCATGGTGAAGTTA+TGG | - | chr1.3:71919804-71919823 | None:intergenic | 40.0% | |
| AGCCCACCATTTGTATTGTA+AGG | + | chr1.3:71918549-71918568 | MS.gene91399:intron | 40.0% | |
| AGCCCTTACAATACAAATGG+TGG | - | chr1.3:71918555-71918574 | None:intergenic | 40.0% | |
| AGGTGATAGTACCAGACAAA+TGG | + | chr1.3:71917600-71917619 | MS.gene91399:CDS | 40.0% | |
| AGTGACCATGGTGAAGTTAT+GGG | - | chr1.3:71919803-71919822 | None:intergenic | 40.0% | |
| ATCATGGAACATGCACATGA+TGG | - | chr1.3:71918954-71918973 | None:intergenic | 40.0% | |
| ATGCACTTAGTTGTTCCGTA+AGG | - | chr1.3:71920377-71920396 | None:intergenic | 40.0% | |
| ATGGGAAGACCAAGTACAAA+TGG | + | chr1.3:71919287-71919306 | MS.gene91399:intron | 40.0% | |
| ATTCTCCCATAACTTCACCA+TGG | + | chr1.3:71919795-71919814 | MS.gene91399:intron | 40.0% | |
| ATTGGCATATAGCTTGGGTT+TGG | - | chr1.3:71918630-71918649 | None:intergenic | 40.0% | |
| ATTGTAAGGGCTGAACATGT+GGG | + | chr1.3:71918563-71918582 | MS.gene91399:intron | 40.0% | |
| CTAATACAGTAGTGAACCCA+AGG | + | chr1.3:71919340-71919359 | MS.gene91399:intron | 40.0% | |
| GCAATGATTGACATGGAAAG+TGG | - | chr1.3:71919396-71919415 | None:intergenic | 40.0% | |
| GCCCACCATTTGTATTGTAA+GGG | + | chr1.3:71918550-71918569 | MS.gene91399:intron | 40.0% | |
| GCCCTTACAATACAAATGGT+GGG | - | chr1.3:71918554-71918573 | None:intergenic | 40.0% | |
| GTACCAGACAAATGGAAAGA+AGG | + | chr1.3:71917608-71917627 | MS.gene91399:CDS | 40.0% | |
| TATTGTAAGGGCTGAACATG+TGG | + | chr1.3:71918562-71918581 | MS.gene91399:intron | 40.0% | |
| TCAACGTAGAGTCGACAAAT+TGG | - | chr1.3:71918363-71918382 | None:intergenic | 40.0% | |
| TCTTTCAGATGGATCTCTTG+TGG | - | chr1.3:71919172-71919191 | None:intergenic | 40.0% | |
| TGAAAGGAACCTGTTCTTCT+TGG | - | chr1.3:71917690-71917709 | None:intergenic | 40.0% | |
| TGCACTTAGTTGTTCCGTAA+GGG | - | chr1.3:71920376-71920395 | None:intergenic | 40.0% | |
| TTACTCACAGAATCAAGTGC+TGG | - | chr1.3:71919735-71919754 | None:intergenic | 40.0% | |
| TTGGAAGATCAGCAGACTTT+AGG | - | chr1.3:71918475-71918494 | None:intergenic | 40.0% | |
| ! | AGGAAACAGTTGAGCTTGTT+AGG | + | chr1.3:71917959-71917978 | MS.gene91399:intron | 40.0% |
| ! | CTACTCATGTTACTTCGTTG+GGG | + | chr1.3:71917921-71917940 | MS.gene91399:intron | 40.0% |
| ! | CTCCAAACTGTCAAGGTTTT+GGG | + | chr1.3:71920106-71920125 | MS.gene91399:intron | 40.0% |
| ! | GCTACTCATGTTACTTCGTT+GGG | + | chr1.3:71917920-71917939 | MS.gene91399:intron | 40.0% |
| ! | GTACTTTGATGGCACATCAT+GGG | - | chr1.3:71918675-71918694 | None:intergenic | 40.0% |
| ! | TCTCCAAACTGTCAAGGTTT+TGG | + | chr1.3:71920105-71920124 | MS.gene91399:intron | 40.0% |
| ! | TGCTACTCATGTTACTTCGT+TGG | + | chr1.3:71917919-71917938 | MS.gene91399:intron | 40.0% |
| !! | ATTTGTCGACTCTACGTTGA+TGG | + | chr1.3:71918363-71918382 | MS.gene91399:intron | 40.0% |
| !! | TAGTAGCTTTAACTTTCCGG+CGG | + | chr1.3:71919067-71919086 | MS.gene91399:intron | 40.0% |
| !! | TTGGCTTTGTACAGAGGATA+TGG | + | chr1.3:71918591-71918610 | MS.gene91399:intron | 40.0% |
| !!! | CTGATGGTTTTGTACTTGCA+GGG | + | chr1.3:71920528-71920547 | MS.gene91399:intron | 40.0% |
| !!! | GGTCTCTGTTTTGGGAATAT+TGG | + | chr1.3:71918057-71918076 | MS.gene91399:intron | 40.0% |
| !!! | TGATGGTTTTGTACTTGCAG+GGG | + | chr1.3:71920529-71920548 | MS.gene91399:intron | 40.0% |
| AGAGCCTTGCCATTGGTAAA+TGG | - | chr1.3:71919026-71919045 | None:intergenic | 45.0% | |
| AGAGTAGCCAATTCGTGGAA+TGG | + | chr1.3:71919268-71919287 | MS.gene91399:intron | 45.0% | |
| AGTCTGCTGATCTTCCAAAG+TGG | + | chr1.3:71918477-71918496 | MS.gene91399:intron | 45.0% | |
| CACACGTGTGCTTACTCAAA+AGG | + | chr1.3:71920437-71920456 | MS.gene91399:CDS | 45.0% | |
| CCTGCAAGTACAAAACCATC+AGG | - | chr1.3:71920530-71920549 | None:intergenic | 45.0% | |
| CGGGATCAAAACAGAGTTTG+AGG | + | chr1.3:71918779-71918798 | MS.gene91399:intron | 45.0% | |
| GAAATCCTCTCATTCTCCCT+TGG | - | chr1.3:71919360-71919379 | None:intergenic | 45.0% | |
| GAGTAGCCAATTCGTGGAAT+GGG | + | chr1.3:71919269-71919288 | MS.gene91399:intron | 45.0% | |
| GCAAGCAATACTACTGAAGG+CGG | + | chr1.3:71917632-71917651 | MS.gene91399:CDS | 45.0% | |
| GCACCTTCTTTCCATTTGTC+TGG | - | chr1.3:71917614-71917633 | None:intergenic | 45.0% | |
| GCACTTAGTTGTTCCGTAAG+GGG | - | chr1.3:71920375-71920394 | None:intergenic | 45.0% | |
| GGAACCTGTTCTTCTTGGAA+AGG | - | chr1.3:71917685-71917704 | None:intergenic | 45.0% | |
| GGTGCAAGCAATACTACTGA+AGG | + | chr1.3:71917629-71917648 | MS.gene91399:CDS | 45.0% | |
| GTAACGTGAAGAGGGAAACT+GGG | - | chr1.3:71919828-71919847 | None:intergenic | 45.0% | |
| TTGTAAGGGCTGAACATGTG+GGG | + | chr1.3:71918564-71918583 | MS.gene91399:intron | 45.0% | |
| ! | AAAGCACCAAACCAAGTACG+AGG | - | chr1.3:71918117-71918136 | None:intergenic | 45.0% |
| ! | GGTACTTTGATGGCACATCA+TGG | - | chr1.3:71918676-71918695 | None:intergenic | 45.0% |
| !! | AATACAAATGGTGGGCTCCA+GGG | - | chr1.3:71918546-71918565 | None:intergenic | 45.0% |
| !!! | CCTGATGGTTTTGTACTTGC+AGG | + | chr1.3:71920527-71920546 | MS.gene91399:intron | 45.0% |
| AACCTGAAGAGCCTTGCCAT+TGG | - | chr1.3:71919033-71919052 | None:intergenic | 50.0% | |
| ACCAAACCAAGTACGAGGAG+TGG | - | chr1.3:71918112-71918131 | None:intergenic | 50.0% | |
| ACCACTCCTCGTACTTGGTT+TGG | + | chr1.3:71918108-71918127 | MS.gene91399:intron | 50.0% | |
| AGCAATACTACTGAAGGCGG+TGG | + | chr1.3:71917635-71917654 | MS.gene91399:CDS | 50.0% | |
| AGTGGTGACATAATGCGTGC+AGG | - | chr1.3:71918094-71918113 | None:intergenic | 50.0% | |
| ATGTCACCACTCCTCGTACT+TGG | + | chr1.3:71918103-71918122 | MS.gene91399:intron | 50.0% | |
| CACATGTGTGCACATCGCTT+GGG | + | chr1.3:71920000-71920019 | MS.gene91399:intron | 50.0% | |
| GCAGTGGCCAATTCGTTGAA+TGG | + | chr1.3:71918269-71918288 | MS.gene91399:intron | 50.0% | |
| GGAAACTGGGAAAGTGACCA+TGG | - | chr1.3:71919815-71919834 | None:intergenic | 50.0% | |
| GGATGAGAGTAGCCAATTCG+TGG | + | chr1.3:71919263-71919282 | MS.gene91399:intron | 50.0% | |
| GGTAACGTGAAGAGGGAAAC+TGG | - | chr1.3:71919829-71919848 | None:intergenic | 50.0% | |
| GGTCTTCCCATTCCACGAAT+TGG | - | chr1.3:71919278-71919297 | None:intergenic | 50.0% | |
| GTGAATCACTAGGATGGCAG+TGG | + | chr1.3:71918253-71918272 | MS.gene91399:intron | 50.0% | |
| GTGGTGACATAATGCGTGCA+GGG | - | chr1.3:71918093-71918112 | None:intergenic | 50.0% | |
| TACCAATGGCAAGGCTCTTC+AGG | + | chr1.3:71919028-71919047 | MS.gene91399:intron | 50.0% | |
| TCACATGTGTGCACATCGCT+TGG | + | chr1.3:71919999-71920018 | MS.gene91399:intron | 50.0% | |
| TGAACCCAAGGGAGAATGAG+AGG | + | chr1.3:71919352-71919371 | MS.gene91399:intron | 50.0% | |
| TGGGGAGGATCGATGTTCTT+AGG | + | chr1.3:71917939-71917958 | MS.gene91399:intron | 50.0% | |
| TGTCGAGGGTAACGTGAAGA+GGG | - | chr1.3:71919836-71919855 | None:intergenic | 50.0% | |
| TGTGACAGTACTTGCCATCC+TGG | - | chr1.3:71920421-71920440 | None:intergenic | 50.0% | |
| TTGTCGAGGGTAACGTGAAG+AGG | - | chr1.3:71919837-71919856 | None:intergenic | 50.0% | |
| ! | CTCATGTTACTTCGTTGGGG+AGG | + | chr1.3:71917924-71917943 | MS.gene91399:intron | 50.0% |
| !! | CAATACAAATGGTGGGCTCC+AGG | - | chr1.3:71918547-71918566 | None:intergenic | 50.0% |
| AAGCAGCAAGTGCACCAGGA+TGG | + | chr1.3:71920404-71920423 | MS.gene91399:CDS | 55.0% | |
| CCTTGCAGATGGACCCCTTA+CGG | + | chr1.3:71920359-71920378 | MS.gene91399:intron | 55.0% | |
| GAATTCGGGAGGCAGTTTGC+AGG | - | chr1.3:71918915-71918934 | None:intergenic | 55.0% | |
| TAAGGGCTGAACATGTGGGG+AGG | + | chr1.3:71918567-71918586 | MS.gene91399:intron | 55.0% | |
| TTGCAAGCAGCAAGTGCACC+AGG | + | chr1.3:71920400-71920419 | MS.gene91399:CDS | 55.0% | |
| !! | GGAGGCTTGGCTTTGTACAG+AGG | + | chr1.3:71918585-71918604 | MS.gene91399:intron | 55.0% |
| CCGTAAGGGGTCCATCTGCA+AGG | - | chr1.3:71920362-71920381 | None:intergenic | 60.0% | |
| GCTGAACATGTGGGGAGGCT+TGG | + | chr1.3:71918572-71918591 | MS.gene91399:intron | 60.0% | |
| GCAGGGGTCTGTGCGATGTG+TGG | + | chr1.3:71920545-71920564 | MS.gene91399:intron | 65.0% | |
| TCCTACTTGCTCGCGTCCGC+CGG | - | chr1.3:71919086-71919105 | None:intergenic | 65.0% | |
| TCCGGCGGACGCGAGCAAGT+AGG | + | chr1.3:71919082-71919101 | MS.gene91399:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 71917481 | 71920613 | 71917481 | ID=MS.gene91399 |
| chr1.3 | mRNA | 71917481 | 71920613 | 71917481 | ID=MS.gene91399.t1;Parent=MS.gene91399 |
| chr1.3 | exon | 71917481 | 71917496 | 71917481 | ID=MS.gene91399.t1.exon1;Parent=MS.gene91399.t1 |
| chr1.3 | CDS | 71917481 | 71917496 | 71917481 | ID=cds.MS.gene91399.t1;Parent=MS.gene91399.t1 |
| chr1.3 | exon | 71917582 | 71917699 | 71917582 | ID=MS.gene91399.t1.exon2;Parent=MS.gene91399.t1 |
| chr1.3 | CDS | 71917582 | 71917699 | 71917582 | ID=cds.MS.gene91399.t1;Parent=MS.gene91399.t1 |
| chr1.3 | exon | 71920367 | 71920458 | 71920367 | ID=MS.gene91399.t1.exon3;Parent=MS.gene91399.t1 |
| chr1.3 | CDS | 71920367 | 71920458 | 71920367 | ID=cds.MS.gene91399.t1;Parent=MS.gene91399.t1 |
| chr1.3 | exon | 71920549 | 71920613 | 71920549 | ID=MS.gene91399.t1.exon4;Parent=MS.gene91399.t1 |
| chr1.3 | CDS | 71920549 | 71920613 | 71920549 | ID=cds.MS.gene91399.t1;Parent=MS.gene91399.t1 |
| Gene Sequence |
| Protein sequence |
