AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91660.t1 MTR_7g013150 92.829 251 18 0 7 257 3 253 3.84e-179 492
MS.gene91660.t1 MTR_7g013140 85.259 251 35 1 7 257 3 251 9.37e-162 448
MS.gene91660.t1 MTR_7g013120 78.571 252 52 2 7 257 3 253 1.88e-150 420
MS.gene91660.t1 MTR_8g058990 72.800 250 68 0 8 257 4 253 5.99e-135 380
MS.gene91660.t1 MTR_8g464350 69.323 251 76 1 8 257 4 254 6.86e-131 370
MS.gene91660.t1 MTR_5g079950 61.883 223 83 1 34 254 33 255 2.70e-103 301
MS.gene91660.t1 MTR_3g094060 57.200 250 103 2 7 254 4 251 1.16e-102 299
MS.gene91660.t1 MTR_3g094040 57.895 247 100 2 7 251 4 248 2.00e-102 298
MS.gene91660.t1 MTR_2g097030 56.746 252 102 2 10 254 5 256 4.08e-100 293
MS.gene91660.t1 MTR_7g061720 60.987 223 85 1 34 254 32 254 5.55e-99 290
MS.gene91660.t1 MTR_5g041700 58.577 239 95 2 15 251 6 242 2.13e-98 288
MS.gene91660.t1 MTR_5g075320 55.422 249 107 2 8 254 3 249 1.48e-97 286
MS.gene91660.t1 MTR_4g081950 55.159 252 100 3 11 251 29 278 7.03e-96 283
MS.gene91660.t1 MTR_3g435430 61.364 220 81 2 34 251 25 242 1.97e-95 280
MS.gene91660.t1 MTR_7g011060 54.694 245 103 2 10 254 2 238 5.53e-95 279
MS.gene91660.t1 MTR_3g466760 54.054 259 111 4 1 253 1 257 6.52e-95 280
MS.gene91660.t1 MTR_4g063975 60.268 224 87 1 33 254 31 254 5.98e-94 277
MS.gene91660.t1 MTR_3g466790 60.811 222 83 2 34 253 32 251 1.61e-93 276
MS.gene91660.t1 MTR_1g085460 59.389 229 87 4 34 257 30 257 4.09e-92 272
MS.gene91660.t1 MTR_1g026020 57.018 228 93 3 34 257 29 255 1.88e-91 270
MS.gene91660.t1 MTR_7g111010 51.587 252 113 5 14 257 4 254 7.95e-88 261
MS.gene91660.t1 MTR_7g110990 55.022 229 97 4 34 257 12 239 1.88e-85 254
MS.gene91660.t1 MTR_4g124340 52.679 224 101 3 34 254 61 282 8.56e-85 254
MS.gene91660.t1 MTR_6g012520 54.839 248 104 2 7 254 1 240 9.96e-85 253
MS.gene91660.t1 MTR_5g011210 49.213 254 121 4 11 257 10 262 1.89e-84 253
MS.gene91660.t1 MTR_0040s0140 48.780 246 121 2 14 254 9 254 7.41e-84 251
MS.gene91660.t1 MTR_5g076950 53.125 224 102 2 33 254 40 262 1.16e-82 248
MS.gene91660.t1 MTR_2g090255 47.131 244 125 2 15 254 7 250 6.82e-81 243
MS.gene91660.t1 MTR_4g102450 52.423 227 104 3 34 257 36 261 1.78e-79 240
MS.gene91660.t1 MTR_3g064510 47.303 241 112 6 26 254 45 282 1.21e-71 221
MS.gene91660.t1 MTR_0008s0120 46.825 252 76 3 8 257 4 199 6.56e-71 216
MS.gene91660.t1 MTR_2g090270 32.500 240 138 8 30 257 31 258 1.71e-31 117
MS.gene91660.t1 MTR_0122s0020 33.740 246 137 10 25 257 32 264 2.36e-31 117
MS.gene91660.t1 MTR_2g090265 31.227 269 154 11 7 257 1 256 7.23e-31 115
MS.gene91660.t1 MTR_6g012500 53.398 103 48 0 152 254 176 278 1.46e-30 115
MS.gene91660.t1 MTR_4g028640 31.474 251 143 11 21 257 29 264 1.62e-25 101
MS.gene91660.t1 MTR_0809s0010 28.421 285 159 9 3 257 1 270 1.84e-25 101
MS.gene91660.t1 MTR_0118s0070 28.511 235 140 10 39 257 53 275 9.64e-20 86.3
MS.gene91660.t1 MTR_4g099370 28.185 259 163 11 3 252 1 245 2.16e-19 84.7
MS.gene91660.t1 MTR_4g075790 29.839 248 139 9 22 253 11 239 5.78e-19 84.0
MS.gene91660.t1 MTR_0122s0020 32.967 182 99 8 25 195 32 201 2.63e-18 80.9
MS.gene91660.t1 MTR_5g013440 27.444 266 162 11 7 257 2 251 2.77e-17 79.0
MS.gene91660.t1 MTR_4g098930 26.515 264 161 11 7 253 1 248 5.15e-15 72.8
MS.gene91660.t1 MTR_1g085365 55.556 54 24 0 201 254 4 57 4.64e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91660.t1 AT5G39280 68.085 235 73 1 23 257 43 275 6.48e-123 351
MS.gene91660.t1 AT5G39300 68.831 231 70 1 27 257 48 276 9.16e-122 348
MS.gene91660.t1 AT5G39270 66.234 231 76 1 27 257 51 279 2.15e-120 345
MS.gene91660.t1 AT5G39290 65.801 231 77 1 27 257 51 279 1.80e-119 342
MS.gene91660.t1 AT5G02260 64.126 223 78 1 34 254 32 254 1.63e-106 309
MS.gene91660.t1 AT2G39700 57.085 247 99 2 15 254 7 253 2.44e-103 301
MS.gene91660.t1 AT5G39310 63.111 225 80 2 34 257 90 312 5.22e-103 302
MS.gene91660.t1 AT2G37640 60.090 223 87 1 34 254 36 258 2.85e-101 296
MS.gene91660.t1 AT3G55500 54.941 253 107 2 9 254 4 256 6.32e-101 295
MS.gene91660.t1 AT5G56320 58.577 239 95 2 18 254 13 249 1.23e-99 291
MS.gene91660.t1 AT5G56320 58.577 239 95 2 18 254 13 249 1.23e-99 291
MS.gene91660.t1 AT5G56320 58.577 239 95 2 18 254 13 249 7.80e-99 291
MS.gene91660.t1 AT5G05290 61.435 223 81 3 34 253 32 252 2.68e-97 285
MS.gene91660.t1 AT2G40610 58.130 246 95 4 14 253 7 250 5.10e-97 285
MS.gene91660.t1 AT2G03090 56.198 242 102 2 15 254 11 250 1.24e-96 283
MS.gene91660.t1 AT1G69530 59.641 223 86 2 34 254 27 247 1.27e-96 284
MS.gene91660.t1 AT1G69530 56.098 246 100 3 12 251 1 244 1.66e-96 283
MS.gene91660.t1 AT1G69530 56.098 246 100 3 12 251 1 244 1.66e-96 283
MS.gene91660.t1 AT1G26770 54.789 261 107 5 1 257 5 258 1.14e-94 279
MS.gene91660.t1 AT2G28950 58.744 223 90 1 34 254 31 253 1.60e-94 278
MS.gene91660.t1 AT1G26770 56.452 248 101 4 14 257 4 248 1.72e-94 278
MS.gene91660.t1 AT2G37640 59.716 211 83 1 46 254 23 233 1.86e-94 277
MS.gene91660.t1 AT5G39260 58.621 232 88 3 27 257 38 262 3.09e-94 278
MS.gene91660.t1 AT3G29030 61.009 218 78 2 34 251 38 248 6.12e-94 277
MS.gene91660.t1 AT4G01630 51.984 252 112 5 11 257 8 255 5.04e-89 264
MS.gene91660.t1 AT1G12560 53.744 227 100 4 34 257 37 261 1.91e-86 258
MS.gene91660.t1 AT1G20190 54.425 226 98 3 36 257 28 252 1.80e-85 255
MS.gene91660.t1 AT1G62980 48.178 247 124 3 14 257 11 256 1.66e-82 248
MS.gene91660.t1 AT1G69530 57.005 207 81 3 12 212 1 205 6.07e-82 245
MS.gene91660.t1 AT1G69530 57.005 207 81 3 12 212 1 205 6.50e-82 246
MS.gene91660.t1 AT3G03220 51.339 224 106 2 33 254 39 261 2.01e-79 240
MS.gene91660.t1 AT4G38210 42.063 252 142 2 7 254 1 252 5.18e-75 229
MS.gene91660.t1 AT1G20190 53.886 193 84 3 69 257 2 193 1.05e-70 216
MS.gene91660.t1 AT3G15370 44.628 242 126 5 18 255 11 248 2.56e-70 217
MS.gene91660.t1 AT3G15370 40.074 272 125 7 18 255 11 278 4.73e-64 202
MS.gene91660.t1 AT4G28250 32.353 238 134 11 34 257 36 260 6.03e-27 105
MS.gene91660.t1 AT2G20750 33.891 239 134 11 33 257 39 267 4.98e-26 103
MS.gene91660.t1 AT1G65680 31.203 266 150 12 7 257 26 273 1.28e-25 102
MS.gene91660.t1 AT4G28250 31.646 237 131 11 34 257 36 254 4.60e-25 100
MS.gene91660.t1 AT2G45110 30.638 235 138 7 37 257 36 259 1.11e-24 99.4
MS.gene91660.t1 AT1G65681 31.390 223 130 7 47 257 11 222 1.13e-23 95.9
MS.gene91660.t1 AT3G60570 29.114 237 142 7 34 257 34 257 3.13e-20 87.4
MS.gene91660.t1 AT3G45970 31.507 219 116 9 53 253 15 217 2.74e-17 79.0
MS.gene91660.t1 AT4G17030 27.027 259 165 10 7 254 1 246 5.43e-17 78.2
MS.gene91660.t1 AT3G60570 27.982 218 131 7 53 257 5 209 3.34e-16 75.5
MS.gene91660.t1 AT3G45970 30.698 215 115 9 57 253 46 244 8.42e-15 72.4
MS.gene91660.t1 AT4G38400 29.954 217 113 11 57 253 47 244 6.13e-14 70.1
MS.gene91660.t1 AT3G45960 31.980 197 109 10 70 253 11 195 8.68e-14 68.9
MS.gene91660.t1 AT3G45960 30.952 210 120 10 57 253 46 243 9.91e-14 69.3

Find 60 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTTCCAATTGGCAATT+TGG 0.192444 7.4:+86120467 MS.gene91660:CDS
TTGGACTCCTGGATCTAATT+TGG 0.210946 7.4:+86120379 MS.gene91660:CDS
GTTTCTCATGTGAGTATTAA+AGG 0.232919 7.4:+86120311 MS.gene91660:CDS
CCCTTATTTCTTTCTAGCTT+TGG 0.238741 7.4:+86120262 MS.gene91660:CDS
ACTCGAAGACCACCGATATT+TGG 0.251454 7.4:+86120096 MS.gene91660:CDS
CTAGCAGCATTGACTTAAAA+TGG 0.283683 7.4:+86119357 MS.gene91660:CDS
CACGCAATTGGGGACAAAAT+TGG 0.290938 7.4:+86120360 MS.gene91660:CDS
ACCAAAGCTAGAAAGAAATA+AGG 0.300240 7.4:-86120263 None:intergenic
GATGCTCATGCAACCTTCTA+TGG 0.306725 7.4:+86119383 MS.gene91660:CDS
GATCTCTTCAAACAAGGATA+TGG 0.334674 7.4:+86119921 MS.gene91660:CDS
GGATTTCCATGTCACGCAAT+TGG 0.349848 7.4:+86120348 MS.gene91660:CDS
TTTGTTGCGGTTATCGTGAT+AGG 0.354832 7.4:-86120056 None:intergenic
CGATCCTCAATGGTGCATAA+AGG 0.355600 7.4:+86120025 MS.gene91660:CDS
GATTTCCATGTCACGCAATT+GGG 0.376885 7.4:+86120349 MS.gene91660:CDS
GACGATACCTGCTTTGTAAT+AGG 0.384346 7.4:-86120174 None:intergenic
GGAACACGTCGATATTTAAC+GGG 0.404956 7.4:-86120197 None:intergenic
ACCAGCTGCGTCACCATAGA+AGG 0.408935 7.4:-86119396 None:intergenic
AGTACAGCTCTATTCAATAA+TGG 0.412808 7.4:+86119963 MS.gene91660:CDS
CCAAAGCTAGAAAGAAATAA+GGG 0.424398 7.4:-86120262 None:intergenic
TTTCTCATGTGAGTATTAAA+GGG 0.433008 7.4:+86120312 MS.gene91660:CDS
ATTCGGTTGCTCCTTCCAAT+TGG 0.443039 7.4:+86120459 MS.gene91660:CDS
GATCCTCAATGGTGCATAAA+GGG 0.454210 7.4:+86120026 MS.gene91660:CDS
TCGGTGGTCTTCGAGTAATC+TGG 0.456534 7.4:-86120089 None:intergenic
TGGGGACAAAATTGGACTCC+TGG 0.464996 7.4:+86120368 MS.gene91660:CDS
TGCTTTGTAATAGGCAATAG+AGG 0.484820 7.4:-86120165 None:intergenic
GTGTACAATGTTGCCAATGC+TGG 0.492882 7.4:+86120284 MS.gene91660:CDS
ACCTTCTATGGTGACGCAGC+TGG 0.497545 7.4:+86119395 MS.gene91660:CDS
TGGAACACGTCGATATTTAA+CGG 0.500310 7.4:-86120198 None:intergenic
TTTCAAGTTAGTACAAGTGA+TGG 0.503641 7.4:+86120419 MS.gene91660:CDS
GGTGTTAGATTTGAGATCAA+AGG 0.518196 7.4:+86120236 MS.gene91660:CDS
TTGTCCCCAATTGCGTGACA+TGG 0.518870 7.4:-86120354 None:intergenic
TTGTTGCGGTTATCGTGATA+GGG 0.528029 7.4:-86120055 None:intergenic
ATGAGAAACATCACCAGCAT+TGG 0.529328 7.4:-86120297 None:intergenic
TTAAAGGGTCTAAGACTGGT+TGG 0.531613 7.4:+86120327 MS.gene91660:CDS
CGTGTTCCATGCATCAAAAG+TGG 0.536521 7.4:+86120212 MS.gene91660:CDS
GGTCTGTCCAAATTGCCAAT+TGG 0.537195 7.4:-86120474 None:intergenic
TCTATTGCCTATTACAAAGC+AGG 0.544747 7.4:+86120167 MS.gene91660:CDS
AGTATTAAAGGGTCTAAGAC+TGG 0.548218 7.4:+86120323 MS.gene91660:CDS
TGTCCTACCAAATTAGATCC+AGG 0.552069 7.4:-86120386 None:intergenic
TGGACAGACCTACGAGGCCA+AGG 0.553270 7.4:+86120487 MS.gene91660:CDS
TTTGTGTCAACGATCCTCAA+TGG 0.553629 7.4:+86120015 MS.gene91660:CDS
AAAATTTCCCTTGGCCTCGT+AGG 0.559321 7.4:-86120495 None:intergenic
GCACCCTTTATGCACCATTG+AGG 0.561751 7.4:-86120029 None:intergenic
TATTTGAAAACAAGCACCAC+AGG 0.572041 7.4:-86119991 None:intergenic
ATTTCCATGTCACGCAATTG+GGG 0.577980 7.4:+86120350 MS.gene91660:CDS
ACTCCTGGATCTAATTTGGT+AGG 0.596348 7.4:+86120383 MS.gene91660:CDS
TTCAATAATGGACTTACCTG+TGG 0.598171 7.4:+86119975 MS.gene91660:CDS
TGTCCAAATTGCCAATTGGA+AGG 0.609662 7.4:-86120470 None:intergenic
TTCTATGGTGACGCAGCTGG+TGG 0.617803 7.4:+86119398 MS.gene91660:CDS
TAGTTGACATGACTTGTATG+AGG 0.623183 7.4:-86119337 None:intergenic
TGTACTAACTTGAAATGACA+AGG 0.641185 7.4:-86120411 None:intergenic
GGACAGACCTACGAGGCCAA+GGG 0.645522 7.4:+86120488 MS.gene91660:CDS
TATGGTGATCTCTTCAAACA+AGG 0.652392 7.4:+86119915 MS.gene91660:CDS
GTTCCATGCATCAAAAGTGG+AGG 0.667109 7.4:+86120215 MS.gene91660:CDS
CATAGTCTGAGACATAGTCA+TGG 0.684736 7.4:-86119276 None:intergenic
GTGGTCTTCGAGTAATCTGG+AGG 0.686927 7.4:-86120086 None:intergenic
GGGATTACACCAAATATCGG+TGG 0.692962 7.4:-86120105 None:intergenic
TAGAGCTGTACTTAGTGCTG+CGG 0.703803 7.4:-86119952 None:intergenic
GAACACGTCGATATTTAACG+GGG 0.756543 7.4:-86120196 None:intergenic
GCAATTTGGACAGACCTACG+AGG 0.762624 7.4:+86120481 MS.gene91660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATATGAATTTTTTTATAT+TGG - chr7.4:86119684-86119703 None:intergenic 10.0%
!!! TAATTTTTTTTATTTGTGTA+CGG - chr7.4:86119826-86119845 None:intergenic 10.0%
!! CATTAAAAAATAACATGTAA+AGG - chr7.4:86119463-86119482 None:intergenic 15.0%
!!! AAAAACTTTAACGTTTTATT+CGG + chr7.4:86120442-86120461 MS.gene91660:CDS 15.0%
!!! ATTTTTTTATATTGGTGTAT+CGG - chr7.4:86119676-86119695 None:intergenic 15.0%
!! TTTGTGATTGTATATTGTTA+TGG - chr7.4:86119517-86119536 None:intergenic 20.0%
!!! GTTTTTTAATGTAGATCAAA+TGG + chr7.4:86119752-86119771 MS.gene91660:intron 20.0%
!!! TTAATTTTATAACTTACGCA+TGG - chr7.4:86119429-86119448 None:intergenic 20.0%
! AACATCATGAAAAAGACTAA+AGG - chr7.4:86119317-86119336 None:intergenic 25.0%
! ATGGTATTTAATTATGCAGA+GGG + chr7.4:86119882-86119901 MS.gene91660:intron 25.0%
! TATGGTATTTAATTATGCAG+AGG + chr7.4:86119881-86119900 MS.gene91660:intron 25.0%
! TTTCTCATGTGAGTATTAAA+GGG + chr7.4:86120312-86120331 MS.gene91660:CDS 25.0%
ACCAAAGCTAGAAAGAAATA+AGG - chr7.4:86120266-86120285 None:intergenic 30.0%
AGTACAGCTCTATTCAATAA+TGG + chr7.4:86119963-86119982 MS.gene91660:CDS 30.0%
CCAAAGCTAGAAAGAAATAA+GGG - chr7.4:86120265-86120284 None:intergenic 30.0%
GTTTCTCATGTGAGTATTAA+AGG + chr7.4:86120311-86120330 MS.gene91660:CDS 30.0%
TATATTGGTGTATCGGATAT+AGG - chr7.4:86119669-86119688 None:intergenic 30.0%
TGGTATTTAATTATGCAGAG+GGG + chr7.4:86119883-86119902 MS.gene91660:intron 30.0%
TGTACTAACTTGAAATGACA+AGG - chr7.4:86120414-86120433 None:intergenic 30.0%
TTTATTTGTGTACGGACATA+GGG - chr7.4:86119818-86119837 None:intergenic 30.0%
!! CTTAAATCGAAGTGTTTTTG+CGG - chr7.4:86120131-86120150 None:intergenic 30.0%
!! TTAAATCGAAGTGTTTTTGC+GGG - chr7.4:86120130-86120149 None:intergenic 30.0%
!! TTTCAAGTTAGTACAAGTGA+TGG + chr7.4:86120419-86120438 MS.gene91660:CDS 30.0%
!! TTTTATTTGTGTACGGACAT+AGG - chr7.4:86119819-86119838 None:intergenic 30.0%
GATCTCTTCAAACAAGGATA+TGG + chr7.4:86119921-86119940 MS.gene91660:CDS 35.0%
GGTATTTAATTATGCAGAGG+GGG + chr7.4:86119884-86119903 MS.gene91660:intron 35.0%
TATGGTGATCTCTTCAAACA+AGG + chr7.4:86119915-86119934 MS.gene91660:CDS 35.0%
TATTTGAAAACAAGCACCAC+AGG - chr7.4:86119994-86120013 None:intergenic 35.0%
TCTATTGCCTATTACAAAGC+AGG + chr7.4:86120167-86120186 MS.gene91660:CDS 35.0%
TGCTTTGTAATAGGCAATAG+AGG - chr7.4:86120168-86120187 None:intergenic 35.0%
TGGAACACGTCGATATTTAA+CGG - chr7.4:86120201-86120220 None:intergenic 35.0%
! AGTATTAAAGGGTCTAAGAC+TGG + chr7.4:86120323-86120342 MS.gene91660:CDS 35.0%
! GGTGTTAGATTTGAGATCAA+AGG + chr7.4:86120236-86120255 MS.gene91660:CDS 35.0%
! TAGTTGACATGACTTGTATG+AGG - chr7.4:86119340-86119359 None:intergenic 35.0%
!! CCCTTATTTCTTTCTAGCTT+TGG + chr7.4:86120262-86120281 MS.gene91660:CDS 35.0%
!! CTAGCAGCATTGACTTAAAA+TGG + chr7.4:86119357-86119376 MS.gene91660:CDS 35.0%
!! TAAATCGAAGTGTTTTTGCG+GGG - chr7.4:86120129-86120148 None:intergenic 35.0%
!! TGGAGGACAAAAATTTGTTG+CGG - chr7.4:86120072-86120091 None:intergenic 35.0%
!! TTCAATAATGGACTTACCTG+TGG + chr7.4:86119975-86119994 MS.gene91660:CDS 35.0%
ACTCCTGGATCTAATTTGGT+AGG + chr7.4:86120383-86120402 MS.gene91660:CDS 40.0%
ATGAGAAACATCACCAGCAT+TGG - chr7.4:86120300-86120319 None:intergenic 40.0%
ATTTCCATGTCACGCAATTG+GGG + chr7.4:86120350-86120369 MS.gene91660:CDS 40.0%
GAACACGTCGATATTTAACG+GGG - chr7.4:86120199-86120218 None:intergenic 40.0%
GACGATACCTGCTTTGTAAT+AGG - chr7.4:86120177-86120196 None:intergenic 40.0%
GATCCTCAATGGTGCATAAA+GGG + chr7.4:86120026-86120045 MS.gene91660:CDS 40.0%
GATTTCCATGTCACGCAATT+GGG + chr7.4:86120349-86120368 MS.gene91660:CDS 40.0%
GGAACACGTCGATATTTAAC+GGG - chr7.4:86120200-86120219 None:intergenic 40.0%
TGTCCAAATTGCCAATTGGA+AGG - chr7.4:86120473-86120492 None:intergenic 40.0%
TGTCCTACCAAATTAGATCC+AGG - chr7.4:86120389-86120408 None:intergenic 40.0%
TTGGACTCCTGGATCTAATT+TGG + chr7.4:86120379-86120398 MS.gene91660:CDS 40.0%
TTGTTGCGGTTATCGTGATA+GGG - chr7.4:86120058-86120077 None:intergenic 40.0%
TTTGTGTCAACGATCCTCAA+TGG + chr7.4:86120015-86120034 MS.gene91660:CDS 40.0%
TTTGTTGCGGTTATCGTGAT+AGG - chr7.4:86120059-86120078 None:intergenic 40.0%
! TTAAAGGGTCTAAGACTGGT+TGG + chr7.4:86120327-86120346 MS.gene91660:CDS 40.0%
!! AAATCGAAGTGTTTTTGCGG+GGG - chr7.4:86120128-86120147 None:intergenic 40.0%
AAAATTTCCCTTGGCCTCGT+AGG - chr7.4:86120498-86120517 None:intergenic 45.0%
ACTCGAAGACCACCGATATT+TGG + chr7.4:86120096-86120115 MS.gene91660:CDS 45.0%
ATTCGGTTGCTCCTTCCAAT+TGG + chr7.4:86120459-86120478 MS.gene91660:CDS 45.0%
CACGCAATTGGGGACAAAAT+TGG + chr7.4:86120360-86120379 MS.gene91660:CDS 45.0%
CGATCCTCAATGGTGCATAA+AGG + chr7.4:86120025-86120044 MS.gene91660:CDS 45.0%
CGGGGGATTACACCAAATAT+CGG - chr7.4:86120111-86120130 None:intergenic 45.0%
CGTGTTCCATGCATCAAAAG+TGG + chr7.4:86120212-86120231 MS.gene91660:CDS 45.0%
GATGCTCATGCAACCTTCTA+TGG + chr7.4:86119383-86119402 MS.gene91660:CDS 45.0%
GCTCCTTCCAATTGGCAATT+TGG + chr7.4:86120467-86120486 MS.gene91660:CDS 45.0%
GGATTTCCATGTCACGCAAT+TGG + chr7.4:86120348-86120367 MS.gene91660:CDS 45.0%
GGGATTACACCAAATATCGG+TGG - chr7.4:86120108-86120127 None:intergenic 45.0%
GGTCTGTCCAAATTGCCAAT+TGG - chr7.4:86120477-86120496 None:intergenic 45.0%
GTGTACAATGTTGCCAATGC+TGG + chr7.4:86120284-86120303 MS.gene91660:CDS 45.0%
GTTCCATGCATCAAAAGTGG+AGG + chr7.4:86120215-86120234 MS.gene91660:CDS 45.0%
TAGAGCTGTACTTAGTGCTG+CGG - chr7.4:86119955-86119974 None:intergenic 45.0%
!! ACACCTCCACTTTTGATGCA+TGG - chr7.4:86120221-86120240 None:intergenic 45.0%
!! TATATAATTAATAATGTATT+TGG + chr7.4:86119566-86119585 MS.gene91660:intron 5.0%
!!! TATTGTTTTTATATAATATA+TGG + chr7.4:86119863-86119882 MS.gene91660:intron 5.0%
AATTATGCAGAGGGGGCTTG+TGG + chr7.4:86119891-86119910 MS.gene91660:intron 50.0%
GCAATTTGGACAGACCTACG+AGG + chr7.4:86120481-86120500 MS.gene91660:CDS 50.0%
GCACCCTTTATGCACCATTG+AGG - chr7.4:86120032-86120051 None:intergenic 50.0%
GTGGTCTTCGAGTAATCTGG+AGG - chr7.4:86120089-86120108 None:intergenic 50.0%
TCGGTGGTCTTCGAGTAATC+TGG - chr7.4:86120092-86120111 None:intergenic 50.0%
TGGGGACAAAATTGGACTCC+TGG + chr7.4:86120368-86120387 MS.gene91660:CDS 50.0%
TTGTCCCCAATTGCGTGACA+TGG - chr7.4:86120357-86120376 None:intergenic 50.0%
ACCAGCTGCGTCACCATAGA+AGG - chr7.4:86119399-86119418 None:intergenic 55.0%
! ACCTTCTATGGTGACGCAGC+TGG + chr7.4:86119395-86119414 MS.gene91660:CDS 55.0%
! TTCTATGGTGACGCAGCTGG+TGG + chr7.4:86119398-86119417 MS.gene91660:CDS 55.0%
GCAGAGGGGGCTTGTGGTTA+TGG + chr7.4:86119897-86119916 MS.gene91660:intron 60.0%
GGACAGACCTACGAGGCCAA+GGG + chr7.4:86120488-86120507 MS.gene91660:CDS 60.0%
TGGACAGACCTACGAGGCCA+AGG + chr7.4:86120487-86120506 MS.gene91660:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 86119278 86120520 86119278 ID=MS.gene91660
chr7.4 mRNA 86119278 86120520 86119278 ID=MS.gene91660.t1;Parent=MS.gene91660
chr7.4 exon 86119278 86119431 86119278 ID=MS.gene91660.t1.exon1;Parent=MS.gene91660.t1
chr7.4 CDS 86119278 86119431 86119278 ID=cds.MS.gene91660.t1;Parent=MS.gene91660.t1
chr7.4 exon 86119901 86120520 86119901 ID=MS.gene91660.t1.exon2;Parent=MS.gene91660.t1
chr7.4 CDS 86119901 86120520 86119901 ID=cds.MS.gene91660.t1;Parent=MS.gene91660.t1
Gene Sequence

>MS.gene91660

ATGACTATGTCTCAGACTATGTCTCATTCTTTTGTTCCTTTAGTCTTTTTCATGATGTTCCTCATACAAGTCATGTCAACTAGCAGCATTGACTTAAAATGGTACGATGCTCATGCAACCTTCTATGGTGACGCAGCTGGTGGTGAAACCATGCGTAAGTTATAAAATTAATCTTCATTTTTCCTTTACATGTTATTTTTTAATGATATATCATACACATTTAATTTAGACTCTTACCATAACAATATACAATCACAAATCTAGTTTTTAAATGAAGATCAGATTACTTATATAATTAATAATGTATTTGGATGTAGATATGATGAAATCAATATGTATCGCATGCAAGCTTTGCAATGCACATGATTGTCACATTTTTTTTATGAAACCTATATCCGATACACCAATATAAAAAAATTCATATTCAATAATTTCATTGTTTTTTATACAATATTTAAAAATTGTTTAAAAATTGTTTTTTAATGTAGATCAAATGGCATATATATTTCATAATATTTGAAGTAGATATGATGAAATCCCTATGTCCGTACACAAATAAAAAAAATTAATATTCAATTATTATTTTATTGTTTTTATATAATATATGGTATTTAATTATGCAGAGGGGGCTTGTGGTTATGGTGATCTCTTCAAACAAGGATATGGTCTTGCAACCGCAGCACTAAGTACAGCTCTATTCAATAATGGACTTACCTGTGGTGCTTGTTTTCAAATAATTTGTGTCAACGATCCTCAATGGTGCATAAAGGGTGCACACCCTATCACGATAACCGCAACAAATTTTTGTCCTCCAGATTACTCGAAGACCACCGATATTTGGTGTAATCCCCCGCAAAAACACTTCGATTTAAGCTATAAAATGTTCACCTCTATTGCCTATTACAAAGCAGGTATCGTCCCCGTTAAATATCGACGTGTTCCATGCATCAAAAGTGGAGGTGTTAGATTTGAGATCAAAGGAAACCCTTATTTCTTTCTAGCTTTGGTGTACAATGTTGCCAATGCTGGTGATGTTTCTCATGTGAGTATTAAAGGGTCTAAGACTGGTTGGATTTCCATGTCACGCAATTGGGGACAAAATTGGACTCCTGGATCTAATTTGGTAGGACAAGCCTTGTCATTTCAAGTTAGTACAAGTGATGGAAAAACTTTAACGTTTTATTCGGTTGCTCCTTCCAATTGGCAATTTGGACAGACCTACGAGGCCAAGGGAAATTTTTAG
Protein sequence

>MS.gene91660.t1

MTMSQTMSHSFVPLVFFMMFLIQVMSTSSIDLKWYDAHATFYGDAAGGETMQGACGYGDLFKQGYGLATAALSTALFNNGLTCGACFQIICVNDPQWCIKGAHPITITATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYYKAGIVPVKYRRVPCIKSGGVRFEIKGNPYFFLALVYNVANAGDVSHVSIKGSKTGWISMSRNWGQNWTPGSNLVGQALSFQVSTSDGKTLTFYSVAPSNWQFGQTYEAKGNF