Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91764.t1 | XP_013463539.1 | 92.9 | 210 | 15 | 0 | 1 | 210 | 1 | 210 | 4.00E-104 | 387.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91764.t1 | Q9ZRA4 | 72.6 | 208 | 56 | 1 | 3 | 209 | 1 | 208 | 1.3e-79 | 297.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91764.t1 | A0A072V680 | 92.9 | 210 | 15 | 0 | 1 | 210 | 1 | 210 | 2.8e-104 | 387.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052142 | MS.gene91764 | 0.838133 | 3.45E-57 | -1.69E-46 |
MS.gene053383 | MS.gene91764 | 0.8067 | 7.24E-50 | -1.69E-46 |
MS.gene055359 | MS.gene91764 | 0.80475 | 1.86E-49 | -1.69E-46 |
MS.gene059006 | MS.gene91764 | 0.801366 | 9.32E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91764.t1 | MTR_2g041570 | 92.857 | 210 | 15 | 0 | 1 | 210 | 1 | 210 | 2.56e-143 | 398 |
MS.gene91764.t1 | MTR_2g041580 | 92.857 | 210 | 15 | 0 | 1 | 210 | 1 | 210 | 2.37e-142 | 395 |
MS.gene91764.t1 | MTR_2g041550 | 84.286 | 210 | 33 | 0 | 1 | 210 | 1 | 210 | 1.28e-127 | 358 |
MS.gene91764.t1 | MTR_8g020590 | 64.904 | 208 | 73 | 0 | 3 | 210 | 1 | 208 | 3.18e-92 | 269 |
MS.gene91764.t1 | MTR_8g020630 | 55.024 | 209 | 90 | 3 | 4 | 210 | 3 | 209 | 1.70e-78 | 234 |
MS.gene91764.t1 | MTR_8g020650 | 55.959 | 193 | 83 | 2 | 18 | 210 | 19 | 209 | 2.45e-76 | 228 |
MS.gene91764.t1 | MTR_8g020670 | 54.067 | 209 | 92 | 3 | 4 | 210 | 3 | 209 | 7.96e-76 | 227 |
MS.gene91764.t1 | MTR_8g020610 | 53.365 | 208 | 91 | 2 | 7 | 210 | 2 | 207 | 3.38e-73 | 220 |
MS.gene91764.t1 | MTR_2g044040 | 49.528 | 212 | 102 | 4 | 1 | 210 | 1 | 209 | 2.29e-69 | 211 |
MS.gene91764.t1 | MTR_2g045100 | 51.196 | 209 | 98 | 3 | 4 | 210 | 3 | 209 | 1.11e-68 | 209 |
MS.gene91764.t1 | MTR_2g036120 | 51.442 | 208 | 97 | 3 | 4 | 209 | 3 | 208 | 3.61e-67 | 205 |
MS.gene91764.t1 | MTR_3g019710 | 49.282 | 209 | 102 | 3 | 4 | 210 | 3 | 209 | 4.95e-66 | 202 |
MS.gene91764.t1 | MTR_3g019650 | 49.519 | 208 | 102 | 3 | 4 | 210 | 3 | 208 | 1.86e-65 | 201 |
MS.gene91764.t1 | MTR_3g019680 | 49.519 | 208 | 102 | 3 | 4 | 210 | 3 | 208 | 6.22e-65 | 199 |
MS.gene91764.t1 | MTR_8g020770 | 46.479 | 213 | 110 | 3 | 1 | 210 | 1 | 212 | 1.21e-61 | 191 |
MS.gene91764.t1 | MTR_5g031460 | 46.445 | 211 | 110 | 3 | 1 | 210 | 1 | 209 | 2.64e-60 | 188 |
MS.gene91764.t1 | MTR_0284s0010 | 46.411 | 209 | 108 | 3 | 4 | 210 | 3 | 209 | 6.90e-60 | 187 |
MS.gene91764.t1 | MTR_4g010340 | 47.596 | 208 | 106 | 3 | 3 | 210 | 1 | 205 | 5.43e-59 | 184 |
MS.gene91764.t1 | MTR_8g020750 | 44.131 | 213 | 115 | 3 | 1 | 210 | 1 | 212 | 1.96e-58 | 183 |
MS.gene91764.t1 | MTR_7g011340 | 46.392 | 194 | 102 | 2 | 17 | 210 | 18 | 209 | 5.89e-57 | 179 |
MS.gene91764.t1 | MTR_8g020760 | 44.860 | 214 | 111 | 4 | 1 | 210 | 1 | 211 | 4.25e-56 | 177 |
MS.gene91764.t1 | MTR_3g073170 | 42.791 | 215 | 113 | 5 | 1 | 210 | 1 | 210 | 1.73e-55 | 176 |
MS.gene91764.t1 | MTR_2g019780 | 41.935 | 217 | 114 | 5 | 1 | 210 | 1 | 212 | 3.15e-52 | 167 |
MS.gene91764.t1 | MTR_3g019810 | 44.878 | 205 | 103 | 4 | 4 | 206 | 109 | 305 | 1.55e-50 | 166 |
MS.gene91764.t1 | MTR_8g020763 | 41.341 | 179 | 104 | 1 | 32 | 210 | 13 | 190 | 1.49e-48 | 157 |
MS.gene91764.t1 | MTR_2g030855 | 46.296 | 162 | 82 | 2 | 20 | 179 | 25 | 183 | 1.38e-43 | 145 |
MS.gene91764.t1 | MTR_2g031270 | 40.957 | 188 | 104 | 3 | 20 | 203 | 26 | 210 | 1.86e-42 | 142 |
MS.gene91764.t1 | MTR_1g023770 | 41.071 | 168 | 95 | 2 | 40 | 203 | 39 | 206 | 5.84e-39 | 133 |
MS.gene91764.t1 | MTR_4g017050 | 38.028 | 213 | 115 | 5 | 7 | 204 | 4 | 214 | 6.67e-39 | 134 |
MS.gene91764.t1 | MTR_5g046410 | 38.028 | 213 | 115 | 5 | 7 | 204 | 4 | 214 | 7.43e-39 | 133 |
MS.gene91764.t1 | MTR_5g046430 | 38.028 | 213 | 115 | 5 | 7 | 204 | 4 | 214 | 7.43e-39 | 133 |
MS.gene91764.t1 | MTR_4g017030 | 38.028 | 213 | 115 | 5 | 7 | 204 | 4 | 214 | 7.43e-39 | 133 |
MS.gene91764.t1 | MTR_1g060120 | 40.719 | 167 | 98 | 1 | 40 | 206 | 56 | 221 | 4.78e-38 | 131 |
MS.gene91764.t1 | MTR_1g112200 | 35.644 | 202 | 125 | 2 | 3 | 204 | 9 | 205 | 7.90e-38 | 130 |
MS.gene91764.t1 | MTR_1g079490 | 38.679 | 212 | 114 | 5 | 8 | 204 | 5 | 215 | 1.03e-37 | 130 |
MS.gene91764.t1 | MTR_6g005310 | 37.674 | 215 | 119 | 5 | 3 | 204 | 1 | 213 | 2.47e-37 | 129 |
MS.gene91764.t1 | MTR_6g005360 | 37.674 | 215 | 119 | 5 | 3 | 204 | 1 | 213 | 3.34e-37 | 129 |
MS.gene91764.t1 | MTR_2g019250 | 36.620 | 213 | 118 | 5 | 7 | 204 | 4 | 214 | 4.59e-37 | 129 |
MS.gene91764.t1 | MTR_4g017040 | 37.037 | 216 | 122 | 5 | 1 | 204 | 1 | 214 | 4.64e-37 | 129 |
MS.gene91764.t1 | MTR_2g030895 | 40.237 | 169 | 96 | 3 | 40 | 203 | 7 | 175 | 1.27e-36 | 126 |
MS.gene91764.t1 | MTR_6g005340 | 37.209 | 215 | 120 | 5 | 3 | 204 | 1 | 213 | 1.62e-36 | 127 |
MS.gene91764.t1 | MTR_7g111240 | 39.785 | 186 | 107 | 2 | 23 | 206 | 26 | 208 | 1.99e-36 | 127 |
MS.gene91764.t1 | MTR_2g030865 | 40.237 | 169 | 96 | 3 | 40 | 203 | 7 | 175 | 2.86e-36 | 125 |
MS.gene91764.t1 | MTR_1g085140 | 38.710 | 186 | 112 | 1 | 23 | 206 | 30 | 215 | 4.17e-36 | 126 |
MS.gene91764.t1 | MTR_2g072560 | 54.464 | 112 | 49 | 2 | 4 | 115 | 6 | 115 | 4.82e-36 | 124 |
MS.gene91764.t1 | MTR_7g111240 | 39.247 | 186 | 111 | 1 | 23 | 206 | 26 | 211 | 7.92e-36 | 125 |
MS.gene91764.t1 | MTR_6g005330 | 39.894 | 188 | 105 | 4 | 23 | 204 | 28 | 213 | 1.90e-35 | 124 |
MS.gene91764.t1 | MTR_4g027415 | 48.031 | 127 | 64 | 2 | 17 | 143 | 18 | 142 | 1.35e-34 | 120 |
MS.gene91764.t1 | MTR_1g085500 | 34.973 | 183 | 117 | 1 | 23 | 203 | 29 | 211 | 3.57e-32 | 116 |
MS.gene91764.t1 | MTR_5g036570 | 34.392 | 189 | 121 | 2 | 23 | 208 | 33 | 221 | 1.27e-31 | 115 |
MS.gene91764.t1 | MTR_2g031300 | 51.887 | 106 | 49 | 1 | 40 | 143 | 7 | 112 | 1.57e-31 | 112 |
MS.gene91764.t1 | MTR_3g019610 | 51.456 | 103 | 48 | 2 | 4 | 106 | 6 | 106 | 1.39e-29 | 106 |
MS.gene91764.t1 | MTR_6g005380 | 38.509 | 161 | 92 | 3 | 14 | 169 | 19 | 177 | 2.07e-29 | 108 |
MS.gene91764.t1 | MTR_8g007300 | 36.723 | 177 | 99 | 5 | 4 | 169 | 5 | 179 | 3.27e-29 | 108 |
MS.gene91764.t1 | MTR_6g005350 | 35.829 | 187 | 113 | 4 | 23 | 204 | 28 | 212 | 5.05e-29 | 108 |
MS.gene91764.t1 | MTR_3g096330 | 36.313 | 179 | 103 | 3 | 1 | 169 | 553 | 730 | 3.04e-28 | 111 |
MS.gene91764.t1 | MTR_2g086630 | 32.367 | 207 | 124 | 5 | 2 | 204 | 8 | 202 | 2.60e-25 | 98.2 |
MS.gene91764.t1 | MTR_2g086620 | 32.367 | 207 | 124 | 5 | 2 | 204 | 8 | 202 | 3.08e-25 | 98.2 |
MS.gene91764.t1 | MTR_2g086640 | 31.429 | 210 | 122 | 5 | 2 | 204 | 7 | 201 | 3.52e-24 | 95.1 |
MS.gene91764.t1 | MTR_4g052770 | 28.972 | 214 | 126 | 7 | 1 | 204 | 6 | 203 | 1.18e-18 | 80.9 |
MS.gene91764.t1 | MTR_4g052780 | 33.077 | 130 | 86 | 1 | 76 | 204 | 74 | 203 | 1.87e-18 | 80.1 |
MS.gene91764.t1 | MTR_2g096110 | 28.148 | 135 | 80 | 3 | 43 | 175 | 6 | 125 | 7.76e-14 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91764.t1 | AT5G20630 | 64.762 | 210 | 73 | 1 | 1 | 209 | 1 | 210 | 1.46e-95 | 277 |
MS.gene91764.t1 | AT1G72610 | 62.500 | 208 | 78 | 0 | 3 | 210 | 1 | 208 | 4.69e-86 | 253 |
MS.gene91764.t1 | AT3G04200 | 44.503 | 191 | 100 | 3 | 23 | 207 | 33 | 223 | 3.42e-43 | 145 |
MS.gene91764.t1 | AT5G39160 | 42.632 | 190 | 101 | 3 | 23 | 207 | 30 | 216 | 1.74e-41 | 140 |
MS.gene91764.t1 | AT5G39190 | 42.932 | 191 | 103 | 3 | 23 | 207 | 30 | 220 | 1.07e-40 | 138 |
MS.gene91764.t1 | AT5G39160 | 42.932 | 191 | 103 | 3 | 23 | 207 | 30 | 220 | 1.34e-40 | 138 |
MS.gene91764.t1 | AT5G39130 | 42.408 | 191 | 104 | 3 | 23 | 207 | 30 | 220 | 4.21e-40 | 137 |
MS.gene91764.t1 | AT5G39110 | 42.021 | 188 | 102 | 3 | 23 | 203 | 30 | 217 | 6.85e-40 | 136 |
MS.gene91764.t1 | AT1G18980 | 39.901 | 203 | 117 | 3 | 3 | 203 | 16 | 215 | 1.47e-39 | 135 |
MS.gene91764.t1 | AT5G39120 | 38.679 | 212 | 121 | 4 | 1 | 203 | 5 | 216 | 1.78e-39 | 135 |
MS.gene91764.t1 | AT5G38960 | 41.837 | 196 | 99 | 6 | 23 | 207 | 32 | 223 | 3.01e-39 | 134 |
MS.gene91764.t1 | AT1G18970 | 39.130 | 207 | 120 | 3 | 1 | 203 | 11 | 215 | 3.06e-39 | 134 |
MS.gene91764.t1 | AT3G05950 | 43.085 | 188 | 99 | 4 | 23 | 203 | 32 | 218 | 4.34e-39 | 134 |
MS.gene91764.t1 | AT5G39150 | 37.850 | 214 | 122 | 4 | 1 | 203 | 3 | 216 | 5.35e-38 | 131 |
MS.gene91764.t1 | AT5G61750 | 40.223 | 179 | 91 | 3 | 1 | 169 | 1 | 173 | 7.19e-38 | 130 |
MS.gene91764.t1 | AT5G39180 | 37.850 | 214 | 122 | 4 | 1 | 203 | 3 | 216 | 8.23e-38 | 130 |
MS.gene91764.t1 | AT3G62020 | 35.610 | 205 | 122 | 3 | 9 | 203 | 8 | 212 | 1.19e-37 | 130 |
MS.gene91764.t1 | AT3G04150 | 40.513 | 195 | 108 | 4 | 23 | 210 | 32 | 225 | 1.78e-37 | 130 |
MS.gene91764.t1 | AT1G02335 | 34.146 | 205 | 133 | 1 | 5 | 207 | 12 | 216 | 5.97e-37 | 128 |
MS.gene91764.t1 | AT3G04150 | 40.782 | 179 | 101 | 2 | 37 | 210 | 60 | 238 | 8.93e-37 | 129 |
MS.gene91764.t1 | AT5G38940 | 45.033 | 151 | 79 | 2 | 23 | 169 | 32 | 182 | 3.12e-36 | 127 |
MS.gene91764.t1 | AT3G04190 | 43.293 | 164 | 87 | 3 | 23 | 181 | 32 | 194 | 4.15e-36 | 126 |
MS.gene91764.t1 | AT5G38940 | 45.033 | 151 | 79 | 2 | 23 | 169 | 56 | 206 | 5.22e-36 | 127 |
MS.gene91764.t1 | AT3G10080 | 38.095 | 189 | 111 | 2 | 21 | 204 | 30 | 217 | 6.59e-36 | 126 |
MS.gene91764.t1 | AT5G26700 | 35.644 | 202 | 124 | 3 | 3 | 203 | 10 | 206 | 1.40e-35 | 125 |
MS.gene91764.t1 | AT5G38930 | 45.033 | 151 | 79 | 2 | 23 | 169 | 32 | 182 | 1.72e-35 | 125 |
MS.gene91764.t1 | AT3G04180 | 40.625 | 192 | 104 | 6 | 23 | 206 | 32 | 221 | 2.01e-35 | 124 |
MS.gene91764.t1 | AT3G10080 | 38.095 | 189 | 111 | 2 | 21 | 204 | 101 | 288 | 2.77e-35 | 126 |
MS.gene91764.t1 | AT1G09560 | 42.373 | 177 | 100 | 1 | 8 | 184 | 17 | 191 | 5.57e-35 | 123 |
MS.gene91764.t1 | AT3G05930 | 37.981 | 208 | 121 | 3 | 4 | 203 | 5 | 212 | 1.39e-34 | 122 |
MS.gene91764.t1 | AT3G62020 | 36.471 | 170 | 105 | 2 | 37 | 203 | 14 | 183 | 4.39e-34 | 120 |
MS.gene91764.t1 | AT3G04170 | 40.314 | 191 | 103 | 6 | 23 | 206 | 32 | 218 | 4.52e-34 | 121 |
MS.gene91764.t1 | AT5G39190 | 42.331 | 163 | 89 | 2 | 50 | 207 | 36 | 198 | 4.60e-34 | 120 |
MS.gene91764.t1 | AT5G39160 | 42.331 | 163 | 89 | 2 | 50 | 207 | 36 | 198 | 4.96e-34 | 120 |
MS.gene91764.t1 | AT5G38910 | 45.122 | 164 | 82 | 3 | 14 | 169 | 17 | 180 | 7.90e-34 | 120 |
MS.gene91764.t1 | AT4G14630 | 37.766 | 188 | 110 | 3 | 23 | 203 | 32 | 219 | 7.91e-32 | 115 |
MS.gene91764.t1 | AT1G10460 | 36.517 | 178 | 105 | 4 | 37 | 208 | 42 | 217 | 1.35e-30 | 112 |
MS.gene91764.t1 | AT1G74820 | 32.850 | 207 | 133 | 3 | 1 | 203 | 18 | 222 | 3.03e-30 | 111 |
MS.gene91764.t1 | AT5G38910 | 34.568 | 162 | 65 | 3 | 14 | 169 | 17 | 143 | 1.94e-15 | 71.6 |
Find 45 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGAACGACCAACATTAATT+TGG | 0.178448 | 2.1:+49640485 | None:intergenic |
TAATCCTCGTTTCCAGATAT+TGG | 0.294879 | 2.1:-49640431 | MS.gene91764:CDS |
GAAGTGTTCGTTGTTATTAA+AGG | 0.300904 | 2.1:-49640607 | MS.gene91764:CDS |
ACAAAGCGTAATCCAATATC+TGG | 0.309210 | 2.1:+49640419 | None:intergenic |
TCATTCGCGGTTACCTTTGA+TGG | 0.323535 | 2.1:+49640805 | None:intergenic |
AAGAAGCTTAAGCGTATTCT+TGG | 0.334205 | 2.1:-49640334 | MS.gene91764:CDS |
GCATTTGACGCACAATTTCC+TGG | 0.335062 | 2.1:-49640715 | MS.gene91764:CDS |
GAATATCCAGCTGGGCCGTT+TGG | 0.395434 | 2.1:+49640838 | None:intergenic |
TTTCCTGGTGTAAACGGTCT+TGG | 0.426338 | 2.1:-49640700 | MS.gene91764:CDS |
GCACAATTTCCTGGTGTAAA+CGG | 0.439824 | 2.1:-49640706 | MS.gene91764:CDS |
AATGCACCAAACGGCCCAGC+TGG | 0.469233 | 2.1:-49640844 | MS.gene91764:CDS |
TCACACACACCCCGGTGCTT+CGG | 0.471434 | 2.1:-49640629 | MS.gene91764:CDS |
GGCTAAATCTAAACGCGCAA+TGG | 0.477631 | 2.1:+49640672 | None:intergenic |
TACCACGGCCTAGCTGCAGC+TGG | 0.478895 | 2.1:-49640775 | MS.gene91764:CDS |
AACGAACACTTCCGAAGCAC+CGG | 0.491763 | 2.1:+49640618 | None:intergenic |
ATTAAAGGAACAATCAGTGC+TGG | 0.495019 | 2.1:-49640592 | MS.gene91764:CDS |
AGCGGCTTTGATAATGTTTG+TGG | 0.500309 | 2.1:+49640747 | None:intergenic |
AAGCGTATTCTTGGAGGCAG+TGG | 0.501763 | 2.1:-49640325 | MS.gene91764:CDS |
AAGCTTAAGCGTATTCTTGG+AGG | 0.506351 | 2.1:-49640331 | MS.gene91764:CDS |
TGGTGTTTCCAGCTGCAGCT+AGG | 0.511440 | 2.1:+49640767 | None:intergenic |
TTGCATTTCCAAATTAATGT+TGG | 0.515849 | 2.1:-49640493 | MS.gene91764:CDS |
TTCCAGCTGCAGCTAGGCCG+TGG | 0.519147 | 2.1:+49640773 | None:intergenic |
GGTTTGCAAGAATATCCAGC+TGG | 0.520856 | 2.1:+49640829 | None:intergenic |
GTTGCAGTAATTAACTCCGT+TGG | 0.523155 | 2.1:+49640382 | None:intergenic |
GCAGATTACAATGCACCAAA+CGG | 0.534474 | 2.1:-49640853 | MS.gene91764:CDS |
ACGAACACTTCCGAAGCACC+GGG | 0.547731 | 2.1:+49640619 | None:intergenic |
TTCTTGCAAACCACCATCAA+AGG | 0.552457 | 2.1:-49640818 | MS.gene91764:CDS |
AATGTAAACAACATTGTCAG+AGG | 0.557352 | 2.1:+49640561 | None:intergenic |
TTCGCGGTTACCTTTGATGG+TGG | 0.572308 | 2.1:+49640808 | None:intergenic |
CGTTTAGATTTAGCCGTCGG+TGG | 0.577924 | 2.1:-49640664 | MS.gene91764:CDS |
AGGAAATTGTGCGTCAAATG+CGG | 0.595844 | 2.1:+49640717 | None:intergenic |
TGGAAATGCAACAATCCTTG+TGG | 0.601071 | 2.1:+49640505 | None:intergenic |
ATTCCAAGACCGTTTACACC+AGG | 0.601562 | 2.1:+49640697 | None:intergenic |
TACATTAAAACACTTCACAA+AGG | 0.607278 | 2.1:-49640544 | MS.gene91764:CDS |
TGCTACGCAGAAATCTACTA+CGG | 0.612239 | 2.1:+49640873 | None:intergenic |
GCGCGTTTAGATTTAGCCGT+CGG | 0.614388 | 2.1:-49640667 | MS.gene91764:CDS |
GCACCGGGGTGTGTGTGAAG+TGG | 0.621649 | 2.1:+49640634 | None:intergenic |
GTGGTAGACGAAGTCATTCG+CGG | 0.625632 | 2.1:+49640792 | None:intergenic |
GTTTGCAAGAATATCCAGCT+GGG | 0.636795 | 2.1:+49640830 | None:intergenic |
AAGTGGAACAACACCACCGA+CGG | 0.642171 | 2.1:+49640651 | None:intergenic |
GTCAAATGCGGTGCTAACAG+CGG | 0.644054 | 2.1:+49640729 | None:intergenic |
GTTCCACTTCACACACACCC+CGG | 0.667019 | 2.1:-49640637 | MS.gene91764:CDS |
TAATCCAATATCTGGAAACG+AGG | 0.691373 | 2.1:+49640427 | None:intergenic |
GCGAATGACTTCGTCTACCA+CGG | 0.705558 | 2.1:-49640790 | MS.gene91764:CDS |
CGAACACTTCCGAAGCACCG+GGG | 0.778153 | 2.1:+49640620 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TACATTAAAACACTTCACAA+AGG | - | chr2.1:49640708-49640727 | MS.gene91764:CDS | 25.0% |
! | TTGCATTTCCAAATTAATGT+TGG | - | chr2.1:49640759-49640778 | MS.gene91764:CDS | 25.0% |
AATGTAAACAACATTGTCAG+AGG | + | chr2.1:49640694-49640713 | None:intergenic | 30.0% | |
TAGAACGACCAACATTAATT+TGG | + | chr2.1:49640770-49640789 | None:intergenic | 30.0% | |
! | GAAGTGTTCGTTGTTATTAA+AGG | - | chr2.1:49640645-49640664 | MS.gene91764:CDS | 30.0% |
! | GATGTTATGATTTTTCCACA+AGG | - | chr2.1:49640732-49640751 | MS.gene91764:CDS | 30.0% |
AAGAAGCTTAAGCGTATTCT+TGG | - | chr2.1:49640918-49640937 | MS.gene91764:CDS | 35.0% | |
ACAAAGCGTAATCCAATATC+TGG | + | chr2.1:49640836-49640855 | None:intergenic | 35.0% | |
ATTAAAGGAACAATCAGTGC+TGG | - | chr2.1:49640660-49640679 | MS.gene91764:CDS | 35.0% | |
TAATCCAATATCTGGAAACG+AGG | + | chr2.1:49640828-49640847 | None:intergenic | 35.0% | |
TAATCCTCGTTTCCAGATAT+TGG | - | chr2.1:49640821-49640840 | MS.gene91764:CDS | 35.0% | |
! | GTTTGAAAGCGATTTTCCAA+CGG | - | chr2.1:49640854-49640873 | MS.gene91764:CDS | 35.0% |
AAGCTTAAGCGTATTCTTGG+AGG | - | chr2.1:49640921-49640940 | MS.gene91764:CDS | 40.0% | |
AGGAAATTGTGCGTCAAATG+CGG | + | chr2.1:49640538-49640557 | None:intergenic | 40.0% | |
GCACAATTTCCTGGTGTAAA+CGG | - | chr2.1:49640546-49640565 | MS.gene91764:CDS | 40.0% | |
GCAGATTACAATGCACCAAA+CGG | - | chr2.1:49640399-49640418 | MS.gene91764:CDS | 40.0% | |
GTTGCAGTAATTAACTCCGT+TGG | + | chr2.1:49640873-49640892 | None:intergenic | 40.0% | |
GTTTGCAAGAATATCCAGCT+GGG | + | chr2.1:49640425-49640444 | None:intergenic | 40.0% | |
TGCTACGCAGAAATCTACTA+CGG | + | chr2.1:49640382-49640401 | None:intergenic | 40.0% | |
TGGAAATGCAACAATCCTTG+TGG | + | chr2.1:49640750-49640769 | None:intergenic | 40.0% | |
TTCTTGCAAACCACCATCAA+AGG | - | chr2.1:49640434-49640453 | MS.gene91764:CDS | 40.0% | |
!! | AGCGGCTTTGATAATGTTTG+TGG | + | chr2.1:49640508-49640527 | None:intergenic | 40.0% |
ATTCCAAGACCGTTTACACC+AGG | + | chr2.1:49640558-49640577 | None:intergenic | 45.0% | |
GCATTTGACGCACAATTTCC+TGG | - | chr2.1:49640537-49640556 | MS.gene91764:CDS | 45.0% | |
GGCTAAATCTAAACGCGCAA+TGG | + | chr2.1:49640583-49640602 | None:intergenic | 45.0% | |
GGTTTGCAAGAATATCCAGC+TGG | + | chr2.1:49640426-49640445 | None:intergenic | 45.0% | |
TCATTCGCGGTTACCTTTGA+TGG | + | chr2.1:49640450-49640469 | None:intergenic | 45.0% | |
TTTCCTGGTGTAAACGGTCT+TGG | - | chr2.1:49640552-49640571 | MS.gene91764:CDS | 45.0% | |
AACGAACACTTCCGAAGCAC+CGG | + | chr2.1:49640637-49640656 | None:intergenic | 50.0% | |
AAGCGTATTCTTGGAGGCAG+TGG | - | chr2.1:49640927-49640946 | MS.gene91764:CDS | 50.0% | |
AAGTGGAACAACACCACCGA+CGG | + | chr2.1:49640604-49640623 | None:intergenic | 50.0% | |
CGTTTAGATTTAGCCGTCGG+TGG | - | chr2.1:49640588-49640607 | MS.gene91764:CDS | 50.0% | |
GCGAATGACTTCGTCTACCA+CGG | - | chr2.1:49640462-49640481 | MS.gene91764:CDS | 50.0% | |
GCGCGTTTAGATTTAGCCGT+CGG | - | chr2.1:49640585-49640604 | MS.gene91764:CDS | 50.0% | |
GTGGTAGACGAAGTCATTCG+CGG | + | chr2.1:49640463-49640482 | None:intergenic | 50.0% | |
TTCGCGGTTACCTTTGATGG+TGG | + | chr2.1:49640447-49640466 | None:intergenic | 50.0% | |
! | GTCAAATGCGGTGCTAACAG+CGG | + | chr2.1:49640526-49640545 | None:intergenic | 50.0% |
GAATATCCAGCTGGGCCGTT+TGG | + | chr2.1:49640417-49640436 | None:intergenic | 55.0% | |
GTTCCACTTCACACACACCC+CGG | - | chr2.1:49640615-49640634 | MS.gene91764:CDS | 55.0% | |
TGGTGTTTCCAGCTGCAGCT+AGG | + | chr2.1:49640488-49640507 | None:intergenic | 55.0% | |
! | ACGAACACTTCCGAAGCACC+GGG | + | chr2.1:49640636-49640655 | None:intergenic | 55.0% |
AATGCACCAAACGGCCCAGC+TGG | - | chr2.1:49640408-49640427 | MS.gene91764:CDS | 60.0% | |
TCACACACACCCCGGTGCTT+CGG | - | chr2.1:49640623-49640642 | MS.gene91764:CDS | 60.0% | |
!! | CGAACACTTCCGAAGCACCG+GGG | + | chr2.1:49640635-49640654 | None:intergenic | 60.0% |
GCACCGGGGTGTGTGTGAAG+TGG | + | chr2.1:49640621-49640640 | None:intergenic | 65.0% | |
TACCACGGCCTAGCTGCAGC+TGG | - | chr2.1:49640477-49640496 | MS.gene91764:CDS | 65.0% | |
TTCCAGCTGCAGCTAGGCCG+TGG | + | chr2.1:49640482-49640501 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 49640321 | 49640953 | 49640321 | ID=MS.gene91764 |
chr2.1 | mRNA | 49640321 | 49640953 | 49640321 | ID=MS.gene91764.t1;Parent=MS.gene91764 |
chr2.1 | exon | 49640321 | 49640953 | 49640321 | ID=MS.gene91764.t1.exon1;Parent=MS.gene91764.t1 |
chr2.1 | CDS | 49640321 | 49640953 | 49640321 | ID=cds.MS.gene91764.t1;Parent=MS.gene91764.t1 |
Gene Sequence |
Protein sequence |