Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91941.t1 | XP_003613602.1 | 93.9 | 114 | 7 | 0 | 30 | 143 | 112 | 225 | 2.30E-55 | 224.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91941.t1 | Q9M9S3 | 75.7 | 115 | 28 | 0 | 29 | 143 | 110 | 224 | 3.4e-47 | 189.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91941.t1 | G7KB19 | 93.9 | 114 | 7 | 0 | 30 | 143 | 112 | 225 | 1.7e-55 | 224.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene91941.t1 | TF | Whirly |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050876 | MS.gene91941 | 0.802993 | 4.31E-49 | -1.69E-46 |
| MS.gene05912 | MS.gene91941 | 0.806479 | 8.06E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene91941 | 0.816218 | 6.19E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91941.t1 | MTR_5g038560 | 93.043 | 115 | 8 | 0 | 29 | 143 | 111 | 225 | 1.98e-75 | 225 |
| MS.gene91941.t1 | MTR_8g468570 | 70.175 | 114 | 34 | 0 | 29 | 142 | 110 | 223 | 9.75e-54 | 170 |
| MS.gene91941.t1 | MTR_7g116270 | 42.857 | 112 | 62 | 1 | 29 | 140 | 76 | 185 | 8.06e-30 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91941.t1 | AT1G14410 | 75.652 | 115 | 28 | 0 | 29 | 143 | 110 | 224 | 1.96e-61 | 190 |
| MS.gene91941.t1 | AT2G02740 | 75.000 | 116 | 28 | 1 | 29 | 143 | 114 | 229 | 1.64e-59 | 185 |
| MS.gene91941.t1 | AT1G71260 | 45.614 | 114 | 62 | 0 | 30 | 143 | 84 | 197 | 5.55e-33 | 116 |
Find 26 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTACCTTCTTCCCATAAA+AGG | 0.254450 | 5.3:-26727145 | None:intergenic |
| TAAACTATCTGTGGATGAAA+TGG | 0.298088 | 5.3:+26727072 | MS.gene91941:CDS |
| ACATCCAATGAAGTGAATTC+TGG | 0.345501 | 5.3:-26724857 | None:intergenic |
| ACCTCCAGAATTCACTTCAT+TGG | 0.371286 | 5.3:+26724853 | MS.gene91941:CDS |
| GCTTTCTGCTCCAATCATAT+TGG | 0.384421 | 5.3:-26725063 | None:intergenic |
| GAGCCACTTCACGACGGTTC+CGG | 0.412542 | 5.3:+26727990 | MS.gene91941:CDS |
| CTACAGTTTGCTCCTTCTGC+CGG | 0.434257 | 5.3:+26725034 | MS.gene91941:CDS |
| ATGGGAAATCTAATTAATCT+TGG | 0.439383 | 5.3:+26727091 | MS.gene91941:CDS |
| AAACTATCTGTGGATGAAAT+GGG | 0.464987 | 5.3:+26727073 | MS.gene91941:CDS |
| CCAATCATATTGGCGAAAAC+CGG | 0.464995 | 5.3:-26725053 | None:intergenic |
| GAAGTGAATTCTGGAGGTAC+AGG | 0.480485 | 5.3:-26724848 | None:intergenic |
| CGTTTCGTTCAGTTTACAAA+GGG | 0.494500 | 5.3:+26724804 | MS.gene91941:CDS |
| ACTTAGTTTAAACATGTGAC+CGG | 0.533326 | 5.3:-26728009 | None:intergenic |
| ATCTAATTAATCTTGGTGCA+AGG | 0.535516 | 5.3:+26727098 | MS.gene91941:CDS |
| TCTAATTAATCTTGGTGCAA+GGG | 0.543790 | 5.3:+26727099 | MS.gene91941:CDS |
| ATATGATTGGAGCAGAAAGC+AGG | 0.558461 | 5.3:+26725066 | MS.gene91941:CDS |
| GTCTTGTTATGCAGTGATGA+AGG | 0.561694 | 5.3:+26727942 | MS.gene91941:intron |
| TGACCGGAACCGTCGTGAAG+TGG | 0.576610 | 5.3:-26727993 | None:intergenic |
| GCATTCAAGATATCTAAAGA+AGG | 0.582740 | 5.3:+26725001 | MS.gene91941:CDS |
| CAAAGGGAAAGCTGTGCTCA+CGG | 0.588472 | 5.3:+26724820 | MS.gene91941:CDS |
| ACAGGTATTTAAACTATCTG+TGG | 0.595168 | 5.3:+26727063 | MS.gene91941:intron |
| TCGTTTCGTTCAGTTTACAA+AGG | 0.598880 | 5.3:+26724803 | MS.gene91941:CDS |
| TATTGGCGAAAACCGGCAGA+AGG | 0.609525 | 5.3:-26725046 | None:intergenic |
| ATTTATCCCTGTCACAAAAG+CGG | 0.631693 | 5.3:+26728208 | MS.gene91941:CDS |
| TCCAATGAAGTGAATTCTGG+AGG | 0.645641 | 5.3:-26724854 | None:intergenic |
| AAGGTGGAGCCACTTCACGA+CGG | 0.712557 | 5.3:+26727984 | MS.gene91941:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATAAATATTTACTATTTA+TGG | + | chr5.3:26727854-26727873 | MS.gene91941:intron | 10.0% |
| !!! | CAAATTTTGTAAAATTATAA+AGG | - | chr5.3:26727915-26727934 | None:intergenic | 10.0% |
| !!! | CTTTATAATTTTAAAGAATT+TGG | + | chr5.3:26727739-26727758 | MS.gene91941:intron | 10.0% |
| !! | AAACTTTAGTTATGATTAAT+TGG | + | chr5.3:26725839-26725858 | MS.gene91941:intron | 15.0% |
| !! | AAATTGTTAATATATACTCT+TGG | + | chr5.3:26728083-26728102 | MS.gene91941:intron | 15.0% |
| !! | ATTCAGTAAAATAATTAGAA+GGG | - | chr5.3:26727182-26727201 | None:intergenic | 15.0% |
| !!! | AAGCATTATTTTTTTTAAAC+AGG | - | chr5.3:26727660-26727679 | None:intergenic | 15.0% |
| !!! | AATATACAACATTTTAACTT+AGG | - | chr5.3:26726565-26726584 | None:intergenic | 15.0% |
| !!! | AATTTTAAAGAATTTGGAAA+AGG | + | chr5.3:26727745-26727764 | MS.gene91941:intron | 15.0% |
| !!! | ATAAAAATTTGAATGTTTTG+AGG | + | chr5.3:26725898-26725917 | MS.gene91941:intron | 15.0% |
| !!! | ATTGAATACTTTTAACTATT+CGG | - | chr5.3:26727688-26727707 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTGTTTAATCAT+AGG | + | chr5.3:26724881-26724900 | MS.gene91941:intron | 15.0% |
| !!! | TTTTATGGAATTATGAATAT+TGG | + | chr5.3:26724938-26724957 | MS.gene91941:intron | 15.0% |
| !! | AATGCAATATCTGAATAATA+AGG | + | chr5.3:26726099-26726118 | MS.gene91941:intron | 20.0% |
| !! | ACTGTAATATTATTTATGCA+TGG | + | chr5.3:26726757-26726776 | MS.gene91941:intron | 20.0% |
| !! | ATATATTAACAATTTCTCGA+TGG | - | chr5.3:26728078-26728097 | None:intergenic | 20.0% |
| !! | ATTATTCAGATATTGCATTT+CGG | - | chr5.3:26726098-26726117 | None:intergenic | 20.0% |
| !! | CATTCAGTAAAATAATTAGA+AGG | - | chr5.3:26727183-26727202 | None:intergenic | 20.0% |
| !! | CTGTAATATTATTTATGCAT+GGG | + | chr5.3:26726758-26726777 | MS.gene91941:intron | 20.0% |
| !! | GTTATTGTTCTTCTATAATT+TGG | + | chr5.3:26725092-26725111 | MS.gene91941:intron | 20.0% |
| !! | TATGCTATAAACACTTAATT+AGG | + | chr5.3:26727561-26727580 | MS.gene91941:intron | 20.0% |
| !! | TTTACAAAATGTACTATACA+AGG | - | chr5.3:26726945-26726964 | None:intergenic | 20.0% |
| !!! | TAAAGTGAGAAAAGTTTTAA+AGG | + | chr5.3:26727965-26727984 | MS.gene91941:CDS | 20.0% |
| !!! | TCTAAATTTCTCATGTTTTA+TGG | + | chr5.3:26724923-26724942 | MS.gene91941:intron | 20.0% |
| !!! | TGAAAGAGTCTAAAATTTAA+TGG | + | chr5.3:26726024-26726043 | MS.gene91941:intron | 20.0% |
| !!! | TTTCATTTTAAACATATCTC+CGG | - | chr5.3:26726066-26726085 | None:intergenic | 20.0% |
| ! | AAATATTCTGCAAGCAAAAT+GGG | - | chr5.3:26726515-26726534 | None:intergenic | 25.0% |
| ! | AACTGTAATATTATTTGTGC+AGG | + | chr5.3:26726852-26726871 | MS.gene91941:intron | 25.0% |
| ! | ATGGGAAATCTAATTAATCT+TGG | + | chr5.3:26727091-26727110 | MS.gene91941:CDS | 25.0% |
| ! | ATTACGTAAAAGCAAATTGA+TGG | - | chr5.3:26727023-26727042 | None:intergenic | 25.0% |
| ! | GAAAAGGATAACATATGTTA+AGG | + | chr5.3:26727761-26727780 | MS.gene91941:intron | 25.0% |
| ! | TAAATATTCTGCAAGCAAAA+TGG | - | chr5.3:26726516-26726535 | None:intergenic | 25.0% |
| ! | TTGTACTAAATCTAGTATCA+CGG | - | chr5.3:26725223-26725242 | None:intergenic | 25.0% |
| !! | ATCATAACTAAAGTTTTCGT+AGG | - | chr5.3:26725835-26725854 | None:intergenic | 25.0% |
| !! | GTACTTATTTATTAGTCTCT+TGG | + | chr5.3:26725435-26725454 | MS.gene91941:intron | 25.0% |
| !! | TCATAACTAAAGTTTTCGTA+GGG | - | chr5.3:26725834-26725853 | None:intergenic | 25.0% |
| !! | TTCATTTTAAACATATCTCC+GGG | - | chr5.3:26726065-26726084 | None:intergenic | 25.0% |
| !! | TTGGAGTGTTTATTTAGTTA+TGG | + | chr5.3:26724957-26724976 | MS.gene91941:intron | 25.0% |
| !!! | ATTGTTTTGTCAATTTTCGA+AGG | + | chr5.3:26728149-26728168 | MS.gene91941:intron | 25.0% |
| !!! | ATTTTTTCACGATCCTTTTA+TGG | + | chr5.3:26727132-26727151 | MS.gene91941:CDS | 25.0% |
| !!! | TTTTTTCACGATCCTTTTAT+GGG | + | chr5.3:26727133-26727152 | MS.gene91941:CDS | 25.0% |
| AAACTATCTGTGGATGAAAT+GGG | + | chr5.3:26727073-26727092 | MS.gene91941:CDS | 30.0% | |
| AAATCCAATGTTGTCAATTG+TGG | - | chr5.3:26725414-26725433 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr5.3:26727420-26727439 | None:intergenic | 30.0% | |
| ACAGGTATTTAAACTATCTG+TGG | + | chr5.3:26727063-26727082 | MS.gene91941:intron | 30.0% | |
| ACTTAGTTTAAACATGTGAC+CGG | - | chr5.3:26728012-26728031 | None:intergenic | 30.0% | |
| AGTACAATGCTGTCAAATAT+TGG | + | chr5.3:26725236-26725255 | MS.gene91941:intron | 30.0% | |
| ATAGACTTTCCTTCTCAAAT+AGG | + | chr5.3:26727260-26727279 | MS.gene91941:intron | 30.0% | |
| ATAGCCATTCAAAACTAAGT+AGG | - | chr5.3:26725952-26725971 | None:intergenic | 30.0% | |
| ATTAACAATTTCTCGATGGA+AGG | - | chr5.3:26728074-26728093 | None:intergenic | 30.0% | |
| CAACTCTTCGAGAAATAAAT+TGG | - | chr5.3:26727819-26727838 | None:intergenic | 30.0% | |
| CTACATGTTATATCTTCAGT+GGG | - | chr5.3:26725516-26725535 | None:intergenic | 30.0% | |
| CTTACAGAGATTATATGCAT+GGG | + | chr5.3:26726662-26726681 | MS.gene91941:intron | 30.0% | |
| CTTAGTGGAATTTGAACAAA+CGG | + | chr5.3:26725189-26725208 | MS.gene91941:intron | 30.0% | |
| CTTCAAATATGTAATGGTCA+CGG | + | chr5.3:26727300-26727319 | MS.gene91941:intron | 30.0% | |
| GCATATAATCTCTGTAAGAT+TGG | - | chr5.3:26726660-26726679 | None:intergenic | 30.0% | |
| GCATTCAAGATATCTAAAGA+AGG | + | chr5.3:26725001-26725020 | MS.gene91941:CDS | 30.0% | |
| GTCATGCTAACATTAAATCA+CGG | - | chr5.3:26727718-26727737 | None:intergenic | 30.0% | |
| TAAACTATCTGTGGATGAAA+TGG | + | chr5.3:26727072-26727091 | MS.gene91941:CDS | 30.0% | |
| TCAAATAACACAATCCAAAC+AGG | - | chr5.3:26727327-26727346 | None:intergenic | 30.0% | |
| TCACCAAACATAAGCAAAAA+CGG | - | chr5.3:26726888-26726907 | None:intergenic | 30.0% | |
| TCTACATGTTATATCTTCAG+TGG | - | chr5.3:26725517-26725536 | None:intergenic | 30.0% | |
| TCTTACAGAGATTATATGCA+TGG | + | chr5.3:26726661-26726680 | MS.gene91941:intron | 30.0% | |
| TGGTGTCTTCAAATATGTAA+TGG | + | chr5.3:26727294-26727313 | MS.gene91941:intron | 30.0% | |
| TGTCACAATTCGAAATTGAT+AGG | - | chr5.3:26726485-26726504 | None:intergenic | 30.0% | |
| TTAACAATTTCTCGATGGAA+GGG | - | chr5.3:26728073-26728092 | None:intergenic | 30.0% | |
| TTCAAATATGTAATGGTCAC+GGG | + | chr5.3:26727301-26727320 | MS.gene91941:intron | 30.0% | |
| ! | AGTCTTGAGTTTGATAACTT+TGG | + | chr5.3:26726694-26726713 | MS.gene91941:intron | 30.0% |
| ! | ATCTAATTAATCTTGGTGCA+AGG | + | chr5.3:26727098-26727117 | MS.gene91941:CDS | 30.0% |
| ! | GCTTATGTTTGGTGAAATTA+AGG | + | chr5.3:26726893-26726912 | MS.gene91941:intron | 30.0% |
| ! | TCTAATTAATCTTGGTGCAA+GGG | + | chr5.3:26727099-26727118 | MS.gene91941:CDS | 30.0% |
| ! | TGTCAAATATTGGCTACTAT+AGG | + | chr5.3:26725246-26725265 | MS.gene91941:intron | 30.0% |
| !! | GCTATTTTCATTAACTATCC+TGG | - | chr5.3:26727455-26727474 | None:intergenic | 30.0% |
| !! | GTTCTTCTATAATTTGGTGT+CGG | + | chr5.3:26725098-26725117 | MS.gene91941:intron | 30.0% |
| !! | TAGGAACTAAGAAGTACTAT+GGG | - | chr5.3:26726223-26726242 | None:intergenic | 30.0% |
| !!! | AGTGAGAAAAGTTTTAAAGG+TGG | + | chr5.3:26727968-26727987 | MS.gene91941:CDS | 30.0% |
| !!! | GAACATTTTTTTGTAGTCAG+GGG | + | chr5.3:26724979-26724998 | MS.gene91941:intron | 30.0% |
| !!! | GGAACATTTTTTTGTAGTCA+GGG | + | chr5.3:26724978-26724997 | MS.gene91941:intron | 30.0% |
| !!! | TGATCCTACTTAGTTTTGAA+TGG | + | chr5.3:26725945-26725964 | MS.gene91941:intron | 30.0% |
| !!! | TGGAACATTTTTTTGTAGTC+AGG | + | chr5.3:26724977-26724996 | MS.gene91941:intron | 30.0% |
| !!! | TGGTTAGTTTTTTTTCTTCC+CGG | + | chr5.3:26726044-26726063 | MS.gene91941:intron | 30.0% |
| AAATAGCAGCTATTGCTTAG+TGG | + | chr5.3:26725174-26725193 | MS.gene91941:intron | 35.0% | |
| AAATCCCTTCCTATTTGAGA+AGG | - | chr5.3:26727272-26727291 | None:intergenic | 35.0% | |
| AACTACCTTCTTCCCATAAA+AGG | - | chr5.3:26727148-26727167 | None:intergenic | 35.0% | |
| AAGAATGCACAAAAGAACGA+AGG | - | chr5.3:26726399-26726418 | None:intergenic | 35.0% | |
| AAGAGAAAGTTTGTGTCACA+GGG | - | chr5.3:26725656-26725675 | None:intergenic | 35.0% | |
| ACATCCAATGAAGTGAATTC+TGG | - | chr5.3:26724860-26724879 | None:intergenic | 35.0% | |
| ACTTTCCTTCTCAAATAGGA+AGG | + | chr5.3:26727264-26727283 | MS.gene91941:intron | 35.0% | |
| AGTTAACTCACAGAAACGTA+CGG | + | chr5.3:26725988-26726007 | MS.gene91941:intron | 35.0% | |
| AGTTATGCCAGTAGCAATTA+AGG | - | chr5.3:26725616-26725635 | None:intergenic | 35.0% | |
| AGTTTGCAATGAATCCAATG+AGG | + | chr5.3:26726291-26726310 | MS.gene91941:intron | 35.0% | |
| ATAACTTTGGACCTAACTCA+AGG | + | chr5.3:26726707-26726726 | MS.gene91941:intron | 35.0% | |
| ATGAATCCAATGAGGCAATA+AGG | + | chr5.3:26726299-26726318 | MS.gene91941:intron | 35.0% | |
| ATGGAACCCTTAACATGTAA+GGG | + | chr5.3:26727873-26727892 | MS.gene91941:intron | 35.0% | |
| ATTAGGCTGTTTATCCAAAC+AGG | + | chr5.3:26727578-26727597 | MS.gene91941:intron | 35.0% | |
| ATTTATCCCTGTCACAAAAG+CGG | + | chr5.3:26728208-26728227 | MS.gene91941:CDS | 35.0% | |
| CGTTTCGTTCAGTTTACAAA+GGG | + | chr5.3:26724804-26724823 | MS.gene91941:CDS | 35.0% | |
| CTTATTTACTTAAGCTCTCC+AGG | + | chr5.3:26727434-26727453 | MS.gene91941:intron | 35.0% | |
| CTTTCCTTCTCAAATAGGAA+GGG | + | chr5.3:26727265-26727284 | MS.gene91941:intron | 35.0% | |
| GAAGTTATATTAGTGCAGAG+TGG | - | chr5.3:26728120-26728139 | None:intergenic | 35.0% | |
| GCGTATGAATCTGCATATAT+GGG | - | chr5.3:26727605-26727624 | None:intergenic | 35.0% | |
| TAACTTTGGACCTAACTCAA+GGG | + | chr5.3:26726708-26726727 | MS.gene91941:intron | 35.0% | |
| TAGAAACATGAACAAACCCA+CGG | + | chr5.3:26726263-26726282 | MS.gene91941:intron | 35.0% | |
| TATGGAACCCTTAACATGTA+AGG | + | chr5.3:26727872-26727891 | MS.gene91941:intron | 35.0% | |
| TCGTTTCGTTCAGTTTACAA+AGG | + | chr5.3:26724803-26724822 | MS.gene91941:CDS | 35.0% | |
| TGATCCACAATTGACAACAT+TGG | + | chr5.3:26725407-26725426 | MS.gene91941:intron | 35.0% | |
| TGCGTATGAATCTGCATATA+TGG | - | chr5.3:26727606-26727625 | None:intergenic | 35.0% | |
| TTAGGCTGTTTATCCAAACA+GGG | + | chr5.3:26727579-26727598 | MS.gene91941:intron | 35.0% | |
| TTCTCAAATAGGAAGGGATT+TGG | + | chr5.3:26727271-26727290 | MS.gene91941:intron | 35.0% | |
| ! | ACTCTCGAGTTTGATAACTT+CGG | + | chr5.3:26726790-26726809 | MS.gene91941:intron | 35.0% |
| ! | ATAGCTGCTATTTGACAACA+CGG | - | chr5.3:26725167-26725186 | None:intergenic | 35.0% |
| ! | GAAAACAGCTTATGGTCTTA+TGG | - | chr5.3:26727412-26727431 | None:intergenic | 35.0% |
| ! | TCATATCAGTTGCTACTTGT+TGG | - | chr5.3:26726996-26727015 | None:intergenic | 35.0% |
| !! | CTAGGAACTAAGAAGTACTA+TGG | - | chr5.3:26726224-26726243 | None:intergenic | 35.0% |
| !! | GTTCCGTTTTTGCTTATGTT+TGG | + | chr5.3:26726882-26726901 | MS.gene91941:intron | 35.0% |
| ACAAAAGAACGAAGGATGGT+GGG | - | chr5.3:26726391-26726410 | None:intergenic | 40.0% | |
| ACATGTGCCCTTACATGTTA+AGG | - | chr5.3:26727883-26727902 | None:intergenic | 40.0% | |
| ACCTCCAGAATTCACTTCAT+TGG | + | chr5.3:26724853-26724872 | MS.gene91941:CDS | 40.0% | |
| AGAGAAAGTTTGTGTCACAG+GGG | - | chr5.3:26725655-26725674 | None:intergenic | 40.0% | |
| AGTACAACGTTGTCAAGTAG+CGG | + | chr5.3:26725323-26725342 | MS.gene91941:intron | 40.0% | |
| AGTCGTCTTTACTTGAACAC+AGG | + | chr5.3:26727045-26727064 | MS.gene91941:intron | 40.0% | |
| ATAACTTCGGACCTAACTCA+AGG | + | chr5.3:26726803-26726822 | MS.gene91941:intron | 40.0% | |
| ATATGATTGGAGCAGAAAGC+AGG | + | chr5.3:26725066-26725085 | MS.gene91941:CDS | 40.0% | |
| ATGCACAAAAGAACGAAGGA+TGG | - | chr5.3:26726395-26726414 | None:intergenic | 40.0% | |
| CATGTGCCCTTACATGTTAA+GGG | - | chr5.3:26727882-26727901 | None:intergenic | 40.0% | |
| CATTCACCTTATTGCCTCAT+TGG | - | chr5.3:26726308-26726327 | None:intergenic | 40.0% | |
| CATTGTAGTGCAGTGGAATT+TGG | + | chr5.3:26725363-26725382 | MS.gene91941:intron | 40.0% | |
| CCAATCATATTGGCGAAAAC+CGG | - | chr5.3:26725056-26725075 | None:intergenic | 40.0% | |
| GAAGAGAAAGTTTGTGTCAC+AGG | - | chr5.3:26725657-26725676 | None:intergenic | 40.0% | |
| GACCAAACCTTAATTGCTAC+TGG | + | chr5.3:26725606-26725625 | MS.gene91941:intron | 40.0% | |
| GCTTTCTGCTCCAATCATAT+TGG | - | chr5.3:26725066-26725085 | None:intergenic | 40.0% | |
| GTGACACTATGTGTATTCTC+TGG | + | chr5.3:26726441-26726460 | MS.gene91941:intron | 40.0% | |
| GTTAACTCACAGAAACGTAC+GGG | + | chr5.3:26725989-26726008 | MS.gene91941:intron | 40.0% | |
| TAACTTCGGACCTAACTCAA+GGG | + | chr5.3:26726804-26726823 | MS.gene91941:intron | 40.0% | |
| TAGGGTGAAAAATACACAGC+TGG | - | chr5.3:26725816-26725835 | None:intergenic | 40.0% | |
| TCAAATAGGAAGGGATTTGG+TGG | + | chr5.3:26727274-26727293 | MS.gene91941:intron | 40.0% | |
| TCCAATGAAGTGAATTCTGG+AGG | - | chr5.3:26724857-26724876 | None:intergenic | 40.0% | |
| TGCCAGTAGCAATTAAGGTT+TGG | - | chr5.3:26725611-26725630 | None:intergenic | 40.0% | |
| TGTTCACTTCCTTTGCAGAT+GGG | - | chr5.3:26726198-26726217 | None:intergenic | 40.0% | |
| TTGTTCACTTCCTTTGCAGA+TGG | - | chr5.3:26726199-26726218 | None:intergenic | 40.0% | |
| ! | ACGATCCTTTTATGGGAAGA+AGG | + | chr5.3:26727140-26727159 | MS.gene91941:CDS | 40.0% |
| ! | CGATGATATTTTGTGCACTG+TGG | - | chr5.3:26726127-26726146 | None:intergenic | 40.0% |
| ! | GTCTTGTTATGCAGTGATGA+AGG | + | chr5.3:26727942-26727961 | MS.gene91941:intron | 40.0% |
| CACAAAAGAACGAAGGATGG+TGG | - | chr5.3:26726392-26726411 | None:intergenic | 45.0% | |
| CATTAAGCACCCATCTGCAA+AGG | + | chr5.3:26726186-26726205 | MS.gene91941:intron | 45.0% | |
| CATTGCAAACTTGCAACCGT+GGG | - | chr5.3:26726282-26726301 | None:intergenic | 45.0% | |
| CTTAGTTCCTAGCACAAACG+AGG | + | chr5.3:26726232-26726251 | MS.gene91941:intron | 45.0% | |
| GCTATAGCATTGTAGTGCAG+TGG | + | chr5.3:26725356-26725375 | MS.gene91941:intron | 45.0% | |
| TCATTGCAAACTTGCAACCG+TGG | - | chr5.3:26726283-26726302 | None:intergenic | 45.0% | |
| ! | CCGGTTTTCGCCAATATGAT+TGG | + | chr5.3:26725053-26725072 | MS.gene91941:CDS | 45.0% |
| ! | GAAGTGAATTCTGGAGGTAC+AGG | - | chr5.3:26724851-26724870 | None:intergenic | 45.0% |
| !! | CAAACTCCGCTTTTGTGACA+GGG | - | chr5.3:26728217-26728236 | None:intergenic | 45.0% |
| !!! | AAATTTTGTAAAATTATAAA+GGG | - | chr5.3:26727914-26727933 | None:intergenic | 5.0% |
| !!! | TATATATATATTTTCTATTA+TGG | + | chr5.3:26725483-26725502 | MS.gene91941:intron | 5.0% |
| AACTCAAGGGAGTTGAGGAC+AGG | + | chr5.3:26726721-26726740 | MS.gene91941:intron | 50.0% | |
| ACTCAAGGGAGTTGAGGACA+GGG | + | chr5.3:26726722-26726741 | MS.gene91941:intron | 50.0% | |
| AGACTGCTTGAGAGAGGTCA+TGG | + | chr5.3:26727368-26727387 | MS.gene91941:intron | 50.0% | |
| CAAAGGGAAAGCTGTGCTCA+CGG | + | chr5.3:26724820-26724839 | MS.gene91941:CDS | 50.0% | |
| CACAGAAACGTACGGGTTTG+AGG | + | chr5.3:26725996-26726015 | MS.gene91941:intron | 50.0% | |
| CTGCATATATGGGCCCTGTT+TGG | - | chr5.3:26727595-26727614 | None:intergenic | 50.0% | |
| CTTGTGAGACTGCTTGAGAG+AGG | + | chr5.3:26727362-26727381 | MS.gene91941:intron | 50.0% | |
| GACCTAACTCAAGGGAGTTG+AGG | + | chr5.3:26726716-26726735 | MS.gene91941:intron | 50.0% | |
| GGTTTCAGCTAGTCAGAGCT+AGG | - | chr5.3:26726333-26726352 | None:intergenic | 50.0% | |
| GTCCTCAACTCCCTTGAGTT+AGG | - | chr5.3:26726721-26726740 | None:intergenic | 50.0% | |
| TATTGGCGAAAACCGGCAGA+AGG | - | chr5.3:26725049-26725068 | None:intergenic | 50.0% | |
| TCCATGACCTCGTTTGTGCT+AGG | - | chr5.3:26726242-26726261 | None:intergenic | 50.0% | |
| TCCTAGCACAAACGAGGTCA+TGG | + | chr5.3:26726238-26726257 | MS.gene91941:intron | 50.0% | |
| TCTTCCAAGTGCTCCAACGA+GGG | + | chr5.3:26726357-26726376 | MS.gene91941:intron | 50.0% | |
| ! | CTACAGTTTGCTCCTTCTGC+CGG | + | chr5.3:26725034-26725053 | MS.gene91941:CDS | 50.0% |
| ! | TTGGAGCACTTGGAAGAGCT+AGG | - | chr5.3:26726354-26726373 | None:intergenic | 50.0% |
| !! | GCAAACTCCGCTTTTGTGAC+AGG | - | chr5.3:26728218-26728237 | None:intergenic | 50.0% |
| AAGGTGGAGCCACTTCACGA+CGG | + | chr5.3:26727984-26728003 | MS.gene91941:CDS | 55.0% | |
| CTCTTCCAAGTGCTCCAACG+AGG | + | chr5.3:26726356-26726375 | MS.gene91941:intron | 55.0% | |
| CTTCCAAGTGCTCCAACGAG+GGG | + | chr5.3:26726358-26726377 | MS.gene91941:intron | 55.0% | |
| GTAATGGTCACGGGCCTGTT+TGG | + | chr5.3:26727310-26727329 | MS.gene91941:intron | 55.0% | |
| GAGCCACTTCACGACGGTTC+CGG | + | chr5.3:26727990-26728009 | MS.gene91941:CDS | 60.0% | |
| TGACCGGAACCGTCGTGAAG+TGG | - | chr5.3:26727996-26728015 | None:intergenic | 60.0% | |
| ! | GTTCCCCTCGTTGGAGCACT+TGG | - | chr5.3:26726364-26726383 | None:intergenic | 60.0% |
| GTGGGACGAGTTCCCCTCGT+TGG | - | chr5.3:26726373-26726392 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 26724796 | 26728265 | 26724796 | ID=MS.gene91941 |
| chr5.3 | mRNA | 26724796 | 26728265 | 26724796 | ID=MS.gene91941.t1;Parent=MS.gene91941 |
| chr5.3 | exon | 26724796 | 26724877 | 26724796 | ID=MS.gene91941.t1.exon1;Parent=MS.gene91941.t1 |
| chr5.3 | CDS | 26724796 | 26724877 | 26724796 | ID=cds.MS.gene91941.t1;Parent=MS.gene91941.t1 |
| chr5.3 | exon | 26724999 | 26725087 | 26724999 | ID=MS.gene91941.t1.exon2;Parent=MS.gene91941.t1 |
| chr5.3 | CDS | 26724999 | 26725087 | 26724999 | ID=cds.MS.gene91941.t1;Parent=MS.gene91941.t1 |
| chr5.3 | exon | 26727067 | 26727161 | 26727067 | ID=MS.gene91941.t1.exon3;Parent=MS.gene91941.t1 |
| chr5.3 | CDS | 26727067 | 26727161 | 26727067 | ID=cds.MS.gene91941.t1;Parent=MS.gene91941.t1 |
| chr5.3 | exon | 26727956 | 26728029 | 26727956 | ID=MS.gene91941.t1.exon4;Parent=MS.gene91941.t1 |
| chr5.3 | CDS | 26727956 | 26728029 | 26727956 | ID=cds.MS.gene91941.t1;Parent=MS.gene91941.t1 |
| chr5.3 | exon | 26728171 | 26728265 | 26728171 | ID=MS.gene91941.t1.exon5;Parent=MS.gene91941.t1 |
| chr5.3 | CDS | 26728171 | 26728265 | 26728171 | ID=cds.MS.gene91941.t1;Parent=MS.gene91941.t1 |
| Gene Sequence |
| Protein sequence |
