AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05912


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05912.t1 MTR_8g103470 94.649 299 5 4 1 295 1 292 0.0 561
MS.gene05912.t1 MTR_3g100960 49.378 241 106 2 50 274 120 360 4.15e-78 242
MS.gene05912.t1 MTR_2g059220 58.523 176 73 0 99 274 159 334 9.32e-71 222
MS.gene05912.t1 MTR_3g100960 47.442 215 97 2 50 248 120 334 3.08e-62 200
MS.gene05912.t1 MTR_3g088435 60.769 130 49 1 130 259 56 183 6.53e-50 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05912.t1 AT3G24590 60.656 305 89 6 7 284 10 310 2.09e-118 342
MS.gene05912.t1 AT3G24590 63.251 283 75 5 27 284 13 291 6.79e-118 340
MS.gene05912.t1 AT2G30440 55.721 201 86 1 77 274 126 326 6.54e-75 233
MS.gene05912.t1 AT1G06870 53.617 235 99 4 50 274 119 353 2.10e-74 232
MS.gene05912.t1 AT1G23465 33.108 148 72 5 119 266 37 157 1.05e-14 70.9
MS.gene05912.t1 AT1G29960 30.405 148 76 5 119 266 37 157 4.27e-12 63.9
MS.gene05912.t1 AT1G29960 31.818 132 67 3 136 266 1 110 3.09e-11 60.1

Find 88 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAATTGAAATGGAATTT+AGG 0.111019 4.4:-3063892 None:intergenic
TTGAATTGAAATGGAATTTA+GGG 0.256391 4.4:-3063891 None:intergenic
AATGGGCATCTAATAGTTAA+TGG 0.280633 4.4:+3065870 MS.gene05912:CDS
TTGTAGAGATGGGGAAAGTT+GGG 0.283164 4.4:-3063931 None:intergenic
AGATGAGCATGGTTGGAGTT+AGG 0.304360 4.4:-3063850 None:intergenic
TGATCTACCTATGATATTCT+TGG 0.323491 4.4:-3066494 None:intergenic
GTCTCCTGCTTGGTATCAAC+AGG 0.332269 4.4:-3066574 None:intergenic
GATGAGCATGGTTGGAGTTA+GGG 0.332751 4.4:-3063849 None:intergenic
AGAGTGTTCTTGAATTGAAA+TGG 0.360968 4.4:-3063900 None:intergenic
ATGGGCATCTAATAGTTAAT+GGG 0.366011 4.4:+3065871 MS.gene05912:CDS
CACTTCCGATGATGCGAAAA+CGG 0.374861 4.4:+3064110 MS.gene05912:CDS
TTTGTAGAGATGGGGAAAGT+TGG 0.374937 4.4:-3063932 None:intergenic
TGGAATTTAGGGAATTTGAT+TGG 0.380325 4.4:-3063880 None:intergenic
ACTGTGGCAGCAATTCTATT+TGG 0.382998 4.4:-3066535 None:intergenic
ATTATTTGCAGGTCCGTAAT+GGG 0.406693 4.4:+3065853 MS.gene05912:intron
GTGGAGATAGTGGTGGTGAC+CGG 0.407194 4.4:+3064034 MS.gene05912:CDS
GTAGATCAGTATTCCGCTAT+TGG 0.411983 4.4:+3066509 MS.gene05912:CDS
CTATGATATTCTTGGCTGGC+AGG 0.415816 4.4:-3066486 None:intergenic
GGAGGTGGCGGCGACGGTGG+TGG 0.423256 4.4:+3064015 MS.gene05912:CDS
AGATCGAATTGTTGCTGAAA+AGG 0.426202 4.4:+3064230 MS.gene05912:CDS
CCTCCAGTCCTTCAAGAAGT+TGG 0.427694 4.4:+3065307 MS.gene05912:CDS
AATTATTTGCAGGTCCGTAA+TGG 0.433672 4.4:+3065852 MS.gene05912:intron
GAAGTGAAATTCAACCAATC+AGG 0.437353 4.4:-3064093 None:intergenic
TCCGGCGGAGGTGGCGGCGA+CGG 0.441458 4.4:+3064009 MS.gene05912:CDS
CTGCCAGCCAAGAATATCAT+AGG 0.449754 4.4:+3066487 MS.gene05912:CDS
GTGGGTTTCATCTCATACTT+CGG 0.452090 4.4:-3065927 None:intergenic
TAACTATTAGATGCCCATTA+CGG 0.453230 4.4:-3065866 None:intergenic
CTCCAGTCCTTCAAGAAGTT+GGG 0.460175 4.4:+3065308 MS.gene05912:CDS
CAGTGTACCCAACTTCTTGA+AGG 0.460559 4.4:-3065315 None:intergenic
TACTACATGGAATTCTTCTA+CGG 0.471553 4.4:-3063972 None:intergenic
GTTTGAAGTGAAGGTGGTGA+TGG 0.474382 4.4:-3063826 None:intergenic
TTGAAAGACTCCGGCGGAGG+TGG 0.476601 4.4:+3064000 MS.gene05912:CDS
TGGAGATAGTGGTGGTGACC+GGG 0.482064 4.4:+3064035 MS.gene05912:CDS
CATAAAACGTGTTGTTGCAA+AGG 0.485707 4.4:+3065351 MS.gene05912:CDS
AAAGACTCCGGCGGAGGTGG+CGG 0.486526 4.4:+3064003 MS.gene05912:CDS
ATGAGCATGGTTGGAGTTAG+GGG 0.488390 4.4:-3063848 None:intergenic
AATTGCTGCCACAGTTGCTA+AGG 0.489212 4.4:+3066543 MS.gene05912:CDS
ACCGTCGCCGCCACCTCCGC+CGG 0.501734 4.4:-3064010 None:intergenic
TAGTGGTGGTGACCGGGAGG+TGG 0.502755 4.4:+3064041 MS.gene05912:CDS
GGCGACGGTGGTGGAGATAG+TGG 0.503765 4.4:+3064024 MS.gene05912:CDS
TCTTTCAAAGCTTTACTACA+TGG 0.507630 4.4:-3063985 None:intergenic
TTTGAAGTGAAGGTGGTGAT+GGG 0.507898 4.4:-3063825 None:intergenic
GAGTTAGGGGTTTGAAGTGA+AGG 0.511273 4.4:-3063835 None:intergenic
ACAGCTACGACTCCCATGTC+TGG 0.514853 4.4:+3066369 MS.gene05912:CDS
TACCCAACTTCTTGAAGGAC+TGG 0.516503 4.4:-3065310 None:intergenic
GTGGCAGCAATTCTATTTGG+TGG 0.518032 4.4:-3066532 None:intergenic
GGCGGAGGTGGCGGCGACGG+TGG 0.520617 4.4:+3064012 MS.gene05912:CDS
ATGATATTCTTGGCTGGCAG+GGG 0.524398 4.4:-3066484 None:intergenic
AAATTCAACCAATCAGGAAA+AGG 0.526736 4.4:-3064087 None:intergenic
CTACCTATGATATTCTTGGC+TGG 0.533496 4.4:-3066490 None:intergenic
ATGTATCCTACTTATGATGT+TGG 0.536051 4.4:+3064207 MS.gene05912:CDS
GTACTTTCATTGCCGAGCCT+AGG 0.537801 4.4:+3064166 MS.gene05912:CDS
GTAGGATACATTGACAAAGA+AGG 0.540446 4.4:-3064195 None:intergenic
ATTGAAGAGATGAGCATGGT+TGG 0.540613 4.4:-3063857 None:intergenic
TGTAGAGATGGGGAAAGTTG+GGG 0.541250 4.4:-3063930 None:intergenic
TGAGATGCCAGAGTAGTACT+AGG 0.541720 4.4:-3066598 None:intergenic
TTCTATTTGGTGGCCAATAG+CGG 0.546441 4.4:-3066522 None:intergenic
CGATCTCCAACATCATAAGT+AGG 0.554885 4.4:-3064213 None:intergenic
TCTACGGCGAAGAGTGGAAG+AGG 0.558063 4.4:-3063956 None:intergenic
AAACGTGTTGTTGCAAAGGA+AGG 0.559313 4.4:+3065355 MS.gene05912:CDS
TTAGGGGTTTGAAGTGAAGG+TGG 0.565879 4.4:-3063832 None:intergenic
AATAGTTAATGGGGTTGAGA+GGG 0.565977 4.4:+3065881 MS.gene05912:CDS
TAATAGTTAATGGGGTTGAG+AGG 0.569069 4.4:+3065880 MS.gene05912:CDS
TATGATATTCTTGGCTGGCA+GGG 0.574775 4.4:-3066485 None:intergenic
CAACTTCTTGAAGGACTGGA+GGG 0.583693 4.4:-3065306 None:intergenic
AATTCTTCTACGGCGAAGAG+TGG 0.590282 4.4:-3063962 None:intergenic
CTGCCACAGTTGCTAAGGGA+GGG 0.595403 4.4:+3066548 MS.gene05912:CDS
GTGCCCTGTTGATACCAAGC+AGG 0.598357 4.4:+3066570 MS.gene05912:CDS
GGAGACTCCTAGTACTACTC+TGG 0.599617 4.4:+3066591 MS.gene05912:CDS
TTGGATTGAAGAGATGAGCA+TGG 0.605648 4.4:-3063861 None:intergenic
GCACCCTCCCTTAGCAACTG+TGG 0.607219 4.4:-3066551 None:intergenic
GCTTTGAAAGACTCCGGCGG+AGG 0.609291 4.4:+3063997 MS.gene05912:CDS
AGTAAAGCTTTGAAAGACTC+CGG 0.611487 4.4:+3063991 MS.gene05912:CDS
AGTACTAGGAGTCTCCTGCT+TGG 0.613469 4.4:-3066584 None:intergenic
ATTGCTGCCACAGTTGCTAA+GGG 0.615825 4.4:+3066544 MS.gene05912:CDS
GGGAGTCGTAGCTGTTATTG+CGG 0.618643 4.4:-3066361 None:intergenic
GGGAAGATAGAGAATGATGA+TGG 0.620096 4.4:-3063805 None:intergenic
AGAAGGAATGAACCTAGGCT+CGG 0.634300 4.4:-3064178 None:intergenic
CCAACTTCTTGAAGGACTGG+AGG 0.635888 4.4:-3065307 None:intergenic
GCTGCCACAGTTGCTAAGGG+AGG 0.637573 4.4:+3066547 MS.gene05912:CDS
TGGGCATCTAATAGTTAATG+GGG 0.642441 4.4:+3065872 MS.gene05912:CDS
AGATAGTGGTGGTGACCGGG+AGG 0.643711 4.4:+3064038 MS.gene05912:CDS
GACAAAGAAGGAATGAACCT+AGG 0.649695 4.4:-3064183 None:intergenic
ATCACGATATCATTTGCACA+CGG 0.672002 4.4:-3065274 None:intergenic
GACGGTGGTGGAGATAGTGG+TGG 0.675092 4.4:+3064027 MS.gene05912:CDS
AAAGGAAGGTGATGTCGTAG+AGG 0.689796 4.4:+3065369 MS.gene05912:CDS
AAAGCTTTGAAAGACTCCGG+CGG 0.729716 4.4:+3063994 MS.gene05912:CDS
TCTCCTGCTTGGTATCAACA+GGG 0.730270 4.4:-3066573 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTCTCAAATTATTTA+CGG + chr4.4:3064513-3064532 MS.gene05912:intron 15.0%
!! AAAACTGAGTACAATATAAA+AGG - chr4.4:3065965-3065984 None:intergenic 20.0%
!! AAACTGAGTACAATATAAAA+GGG - chr4.4:3065964-3065983 None:intergenic 20.0%
!! AAATTGCATTTAACATTGTA+AGG - chr4.4:3066454-3066473 None:intergenic 20.0%
!! ATCAATTCAAAATTAGTGTT+TGG - chr4.4:3064799-3064818 None:intergenic 20.0%
!! GAAGTTCAAGTAAATATATA+TGG + chr4.4:3064566-3064585 MS.gene05912:intron 20.0%
!! TTGAATTGAAATGGAATTTA+GGG - chr4.4:3063894-3063913 None:intergenic 20.0%
!! TTGATGTCAAATCTATTAAA+GGG - chr4.4:3065163-3065182 None:intergenic 20.0%
!! TTTGATGTCAAATCTATTAA+AGG - chr4.4:3065164-3065183 None:intergenic 20.0%
!!! ATGTTAAATGCAATTTTCTT+AGG + chr4.4:3066458-3066477 MS.gene05912:intron 20.0%
!!! TATTGATTTTCATACATACT+CGG + chr4.4:3064976-3064995 MS.gene05912:intron 20.0%
!!! TGTTAAATGCAATTTTCTTA+GGG + chr4.4:3066459-3066478 MS.gene05912:intron 20.0%
!!! TTAATCTGTTTTAACGATTA+AGG + chr4.4:3065534-3065553 MS.gene05912:intron 20.0%
!!! TTTTTATCTCATTTGTCTTT+TGG - chr4.4:3064346-3064365 None:intergenic 20.0%
! AAGGGTTATGAAGATAATTT+GGG + chr4.4:3066146-3066165 MS.gene05912:intron 25.0%
! ATTAGATAGACTCTCTATAA+TGG + chr4.4:3064625-3064644 MS.gene05912:intron 25.0%
! CAAATTTAATATATACGCTG+TGG + chr4.4:3066107-3066126 MS.gene05912:intron 25.0%
! CTTGAATTGAAATGGAATTT+AGG - chr4.4:3063895-3063914 None:intergenic 25.0%
! GGACTAATAAAGAAAATAAG+AGG - chr4.4:3065988-3066007 None:intergenic 25.0%
! TGATGTCAAATCTATTAAAG+GGG - chr4.4:3065162-3065181 None:intergenic 25.0%
! TTATAGAGAGTCTATCTAAT+TGG - chr4.4:3064625-3064644 None:intergenic 25.0%
! TTGATTGACATAAGTTTACA+TGG + chr4.4:3064814-3064833 MS.gene05912:intron 25.0%
! TTTGTACATTAATTACGCAT+AGG - chr4.4:3066009-3066028 None:intergenic 25.0%
!! AAACAAATTTTACCAGACAT+GGG - chr4.4:3066384-3066403 None:intergenic 25.0%
!! GTTAAATGCAATTTTCTTAG+GGG + chr4.4:3066460-3066479 MS.gene05912:intron 25.0%
!!! AATAGGTGAAGTTTTTCAAA+TGG - chr4.4:3064681-3064700 None:intergenic 25.0%
!!! TGATTAAAGTTTTTAGTGGA+AGG + chr4.4:3065511-3065530 MS.gene05912:intron 25.0%
!!! TGCTTGATTAAAGTTTTTAG+TGG + chr4.4:3065507-3065526 MS.gene05912:intron 25.0%
AAATTCAACCAATCAGGAAA+AGG - chr4.4:3064090-3064109 None:intergenic 30.0%
AATGGGCATCTAATAGTTAA+TGG + chr4.4:3065870-3065889 MS.gene05912:CDS 30.0%
ATATGAAACCTGAAAACATG+AGG - chr4.4:3065242-3065261 None:intergenic 30.0%
ATGGGCATCTAATAGTTAAT+GGG + chr4.4:3065871-3065890 MS.gene05912:CDS 30.0%
ATGTATCCTACTTATGATGT+TGG + chr4.4:3064207-3064226 MS.gene05912:CDS 30.0%
ATTTAATATATACGCTGTGG+TGG + chr4.4:3066110-3066129 MS.gene05912:intron 30.0%
CAAAACCTATAACAATAGCA+TGG - chr4.4:3064592-3064611 None:intergenic 30.0%
CAAGGGTTATGAAGATAATT+TGG + chr4.4:3066145-3066164 MS.gene05912:intron 30.0%
CAATGAAATGAACTTCTTAC+TGG + chr4.4:3064287-3064306 MS.gene05912:intron 30.0%
GAAAAACTTCACCTATTTGT+TGG + chr4.4:3064684-3064703 MS.gene05912:intron 30.0%
GATAGAATCATGTGGATTTA+TGG + chr4.4:3065131-3065150 MS.gene05912:intron 30.0%
GTTATGAAGATAATTTGGGA+CGG + chr4.4:3066150-3066169 MS.gene05912:intron 30.0%
TAAATCCACATGATTCTATC+CGG - chr4.4:3065131-3065150 None:intergenic 30.0%
TAACTATTAGATGCCCATTA+CGG - chr4.4:3065869-3065888 None:intergenic 30.0%
TACTACATGGAATTCTTCTA+CGG - chr4.4:3063975-3063994 None:intergenic 30.0%
TCTTTCAAAGCTTTACTACA+TGG - chr4.4:3063988-3064007 None:intergenic 30.0%
TGACATAAGTTTACATGGAA+TGG + chr4.4:3064819-3064838 MS.gene05912:intron 30.0%
TGAGCAATTGAATTATTTGC+AGG + chr4.4:3065842-3065861 MS.gene05912:intron 30.0%
TGATCTACCTATGATATTCT+TGG - chr4.4:3066497-3066516 None:intergenic 30.0%
TGGAATTTAGGGAATTTGAT+TGG - chr4.4:3063883-3063902 None:intergenic 30.0%
TGTTGAAGCATATTAATTGC+TGG + chr4.4:3065017-3065036 MS.gene05912:intron 30.0%
TTCTTCATTTCAATCCAAGA+GGG + chr4.4:3064261-3064280 MS.gene05912:intron 30.0%
TTTCTTCATTTCAATCCAAG+AGG + chr4.4:3064260-3064279 MS.gene05912:intron 30.0%
! AGAGTGTTCTTGAATTGAAA+TGG - chr4.4:3063903-3063922 None:intergenic 30.0%
! ATCTTCATAACCCTTGTTTA+GGG - chr4.4:3066141-3066160 None:intergenic 30.0%
! CAAACAAATTTTACCAGACA+TGG - chr4.4:3066385-3066404 None:intergenic 30.0%
! TATCTTCATAACCCTTGTTT+AGG - chr4.4:3066142-3066161 None:intergenic 30.0%
! TGATAAATCCTCATGTTTTC+AGG + chr4.4:3065231-3065250 MS.gene05912:intron 30.0%
! TTATGAAGATAATTTGGGAC+GGG + chr4.4:3066151-3066170 MS.gene05912:intron 30.0%
!!! CTGTTTTAACGATTAAGGTT+TGG + chr4.4:3065539-3065558 MS.gene05912:intron 30.0%
AAAAGGGTAGAACTTACTGT+GGG - chr4.4:3065948-3065967 None:intergenic 35.0%
AATAGTTAATGGGGTTGAGA+GGG + chr4.4:3065881-3065900 MS.gene05912:CDS 35.0%
AATTATTTGCAGGTCCGTAA+TGG + chr4.4:3065852-3065871 MS.gene05912:intron 35.0%
AATTTCAAACTTCCAAGTGC+AGG - chr4.4:3065593-3065612 None:intergenic 35.0%
AGATCGAATTGTTGCTGAAA+AGG + chr4.4:3064230-3064249 MS.gene05912:CDS 35.0%
ATCACGATATCATTTGCACA+CGG - chr4.4:3065277-3065296 None:intergenic 35.0%
ATTATTTGCAGGTCCGTAAT+GGG + chr4.4:3065853-3065872 MS.gene05912:intron 35.0%
CTCAAAACTCAAATACTCAC+CGG + chr4.4:3065109-3065128 MS.gene05912:intron 35.0%
CTTGTGCTTGATTGTGTTTA+AGG + chr4.4:3066205-3066224 MS.gene05912:intron 35.0%
GAAGTGAAATTCAACCAATC+AGG - chr4.4:3064096-3064115 None:intergenic 35.0%
GGGTATACTTCTATATTCAG+TGG + chr4.4:3064714-3064733 MS.gene05912:intron 35.0%
GTAGGATACATTGACAAAGA+AGG - chr4.4:3064198-3064217 None:intergenic 35.0%
TAAAAGGGTAGAACTTACTG+TGG - chr4.4:3065949-3065968 None:intergenic 35.0%
TAATAGTTAATGGGGTTGAG+AGG + chr4.4:3065880-3065899 MS.gene05912:CDS 35.0%
TATGGCCATGCTATTGTTAT+AGG + chr4.4:3064584-3064603 MS.gene05912:intron 35.0%
TCATTTCATTGAAACCCTCT+TGG - chr4.4:3064278-3064297 None:intergenic 35.0%
TCGTCTTCAATCTTAAGTGT+CGG - chr4.4:3064461-3064480 None:intergenic 35.0%
TGCTCACATTTAATACACCA+AGG - chr4.4:3065828-3065847 None:intergenic 35.0%
TGGGCATCTAATAGTTAATG+GGG + chr4.4:3065872-3065891 MS.gene05912:CDS 35.0%
! AAAAACCGTTTTCGCATCAT+CGG - chr4.4:3064118-3064137 None:intergenic 35.0%
! CATAAAACGTGTTGTTGCAA+AGG + chr4.4:3065351-3065370 MS.gene05912:CDS 35.0%
! CATGTCATTCTTTGAGAGAA+TGG + chr4.4:3066050-3066069 MS.gene05912:intron 35.0%
! CTTTTGTGCAATGACAGAAA+CGG - chr4.4:3066250-3066269 None:intergenic 35.0%
! GCTTTTCTGTAACATTCACA+GGG + chr4.4:3064736-3064755 MS.gene05912:intron 35.0%
! TCACCTATTTGTTGGAAGAT+GGG + chr4.4:3064692-3064711 MS.gene05912:intron 35.0%
! TGTCGTAGAGGTATGATATT+TGG + chr4.4:3065381-3065400 MS.gene05912:intron 35.0%
! TTCACCTATTTGTTGGAAGA+TGG + chr4.4:3064691-3064710 MS.gene05912:intron 35.0%
!! AGTAAAGCTTTGAAAGACTC+CGG + chr4.4:3063991-3064010 MS.gene05912:CDS 35.0%
ACTGTGGCAGCAATTCTATT+TGG - chr4.4:3066538-3066557 None:intergenic 40.0%
AGTCAGATTCTAACCCACTT+GGG + chr4.4:3065656-3065675 MS.gene05912:intron 40.0%
ATCACAAAAACGGAGTTCTC+AGG - chr4.4:3066332-3066351 None:intergenic 40.0%
ATTCACAGGGATAGAGAACA+AGG + chr4.4:3064749-3064768 MS.gene05912:intron 40.0%
ATTGAAGAGATGAGCATGGT+TGG - chr4.4:3063860-3063879 None:intergenic 40.0%
CAAGCACAAGACAACACAAT+AGG - chr4.4:3066195-3066214 None:intergenic 40.0%
CGATCTCCAACATCATAAGT+AGG - chr4.4:3064216-3064235 None:intergenic 40.0%
CTACCTATGATATTCTTGGC+TGG - chr4.4:3066493-3066512 None:intergenic 40.0%
GACAAAGAAGGAATGAACCT+AGG - chr4.4:3064186-3064205 None:intergenic 40.0%
GATAAGAAAAATGGGTCGTC+GGG + chr4.4:3064063-3064082 MS.gene05912:CDS 40.0%
GGATAAGAAAAATGGGTCGT+CGG + chr4.4:3064062-3064081 MS.gene05912:CDS 40.0%
GGGAAGATAGAGAATGATGA+TGG - chr4.4:3063808-3063827 None:intergenic 40.0%
GGGAGGTGGATAAGAAAAAT+GGG + chr4.4:3064055-3064074 MS.gene05912:CDS 40.0%
GTAGATCAGTATTCCGCTAT+TGG + chr4.4:3066509-3066528 MS.gene05912:CDS 40.0%
GTGGGTTTCATCTCATACTT+CGG - chr4.4:3065930-3065949 None:intergenic 40.0%
GTTGTCTCCCATCACAAAAA+CGG - chr4.4:3066342-3066361 None:intergenic 40.0%
TATGATATTCTTGGCTGGCA+GGG - chr4.4:3066488-3066507 None:intergenic 40.0%
TGAATGACGTTAGCTCAACA+AGG - chr4.4:3065441-3065460 None:intergenic 40.0%
TGTTGAGCTAACGTCATTCA+AGG + chr4.4:3065441-3065460 MS.gene05912:intron 40.0%
TTCACAGGGATAGAGAACAA+GGG + chr4.4:3064750-3064769 MS.gene05912:intron 40.0%
TTGGATTGAAGAGATGAGCA+TGG - chr4.4:3063864-3063883 None:intergenic 40.0%
TTGTAGAGATGGGGAAAGTT+GGG - chr4.4:3063934-3063953 None:intergenic 40.0%
TTGTGTTTGATTCAGTGCCT+TGG + chr4.4:3065808-3065827 MS.gene05912:intron 40.0%
TTTGTAGAGATGGGGAAAGT+TGG - chr4.4:3063935-3063954 None:intergenic 40.0%
! AAACGTGTTGTTGCAAAGGA+AGG + chr4.4:3065355-3065374 MS.gene05912:CDS 40.0%
! ACCTATTTGTTGGAAGATGG+GGG + chr4.4:3064694-3064713 MS.gene05912:intron 40.0%
! CACCTATTTGTTGGAAGATG+GGG + chr4.4:3064693-3064712 MS.gene05912:intron 40.0%
! CATTTTTCTTATCCACCTCC+CGG - chr4.4:3064056-3064075 None:intergenic 40.0%
! GGCTTTTCTGTAACATTCAC+AGG + chr4.4:3064735-3064754 MS.gene05912:intron 40.0%
! GGTATCAACGTGTTTTGCAT+CGG + chr4.4:3064534-3064553 MS.gene05912:intron 40.0%
! TTCTATTTGGTGGCCAATAG+CGG - chr4.4:3066525-3066544 None:intergenic 40.0%
! TTTGAAGTGAAGGTGGTGAT+GGG - chr4.4:3063828-3063847 None:intergenic 40.0%
!! GAAGAGGTTTTGTAGAGATG+GGG - chr4.4:3063943-3063962 None:intergenic 40.0%
!! GAGAACTCCGTTTTTGTGAT+GGG + chr4.4:3066332-3066351 MS.gene05912:CDS 40.0%
!! GGAAGAGGTTTTGTAGAGAT+GGG - chr4.4:3063944-3063963 None:intergenic 40.0%
!! TGAGAACTCCGTTTTTGTGA+TGG + chr4.4:3066331-3066350 MS.gene05912:CDS 40.0%
!! TGGAAGAGGTTTTGTAGAGA+TGG - chr4.4:3063945-3063964 None:intergenic 40.0%
AAAGGAAGGTGATGTCGTAG+AGG + chr4.4:3065369-3065388 MS.gene05912:CDS 45.0%
AATTCTTCTACGGCGAAGAG+TGG - chr4.4:3063965-3063984 None:intergenic 45.0%
AATTGCTGCCACAGTTGCTA+AGG + chr4.4:3066543-3066562 MS.gene05912:CDS 45.0%
ACCCCCATCTTCCAACAAAT+AGG - chr4.4:3064698-3064717 None:intergenic 45.0%
ACTCACCGGATAGAATCATG+TGG + chr4.4:3065123-3065142 MS.gene05912:intron 45.0%
AGAAGGAATGAACCTAGGCT+CGG - chr4.4:3064181-3064200 None:intergenic 45.0%
AGATGAGCATGGTTGGAGTT+AGG - chr4.4:3063853-3063872 None:intergenic 45.0%
ATGAGCATGGTTGGAGTTAG+GGG - chr4.4:3063851-3063870 None:intergenic 45.0%
ATGATATTCTTGGCTGGCAG+GGG - chr4.4:3066487-3066506 None:intergenic 45.0%
ATTCTCCCCGGAGCTAATTT+GGG + chr4.4:3065740-3065759 MS.gene05912:intron 45.0%
ATTGCTGCCACAGTTGCTAA+GGG + chr4.4:3066544-3066563 MS.gene05912:CDS 45.0%
CAACTTCTTGAAGGACTGGA+GGG - chr4.4:3065309-3065328 None:intergenic 45.0%
CACTTCCGATGATGCGAAAA+CGG + chr4.4:3064110-3064129 MS.gene05912:CDS 45.0%
CAGTCAGATTCTAACCCACT+TGG + chr4.4:3065655-3065674 MS.gene05912:intron 45.0%
CAGTGTACCCAACTTCTTGA+AGG - chr4.4:3065318-3065337 None:intergenic 45.0%
CGGGAGGTGGATAAGAAAAA+TGG + chr4.4:3064054-3064073 MS.gene05912:CDS 45.0%
CTATGATATTCTTGGCTGGC+AGG - chr4.4:3066489-3066508 None:intergenic 45.0%
CTCCAGTCCTTCAAGAAGTT+GGG + chr4.4:3065308-3065327 MS.gene05912:CDS 45.0%
CTGCCAGCCAAGAATATCAT+AGG + chr4.4:3066487-3066506 MS.gene05912:CDS 45.0%
GATGAGCATGGTTGGAGTTA+GGG - chr4.4:3063852-3063871 None:intergenic 45.0%
GTGGCAGCAATTCTATTTGG+TGG - chr4.4:3066535-3066554 None:intergenic 45.0%
TACCCAACTTCTTGAAGGAC+TGG - chr4.4:3065313-3065332 None:intergenic 45.0%
TAGTCCACCCAAATTAGCTC+CGG - chr4.4:3065750-3065769 None:intergenic 45.0%
TATGACGTTCGTGCGAGTAT+TGG + chr4.4:3064848-3064867 MS.gene05912:intron 45.0%
TCACAGGGATAGAGAACAAG+GGG + chr4.4:3064751-3064770 MS.gene05912:intron 45.0%
TCTCCTGCTTGGTATCAACA+GGG - chr4.4:3066576-3066595 None:intergenic 45.0%
TGAGATGCCAGAGTAGTACT+AGG - chr4.4:3066601-3066620 None:intergenic 45.0%
TGTAGAGATGGGGAAAGTTG+GGG - chr4.4:3063933-3063952 None:intergenic 45.0%
TTGAGGATAAGCACACTCCA+AGG - chr4.4:3065707-3065726 None:intergenic 45.0%
TTGGAGTGTGCTTATCCTCA+AGG + chr4.4:3065706-3065725 MS.gene05912:intron 45.0%
! AATTTGGGACGGGCATATGA+GGG + chr4.4:3066161-3066180 MS.gene05912:intron 45.0%
! GAGTTAGGGGTTTGAAGTGA+AGG - chr4.4:3063838-3063857 None:intergenic 45.0%
! GTTTGAAGTGAAGGTGGTGA+TGG - chr4.4:3063829-3063848 None:intergenic 45.0%
! TAATTTGGGACGGGCATATG+AGG + chr4.4:3066160-3066179 MS.gene05912:intron 45.0%
! TTAGGGGTTTGAAGTGAAGG+TGG - chr4.4:3063835-3063854 None:intergenic 45.0%
!! AAAGCTTTGAAAGACTCCGG+CGG + chr4.4:3063994-3064013 MS.gene05912:CDS 45.0%
AGTACTAGGAGTCTCCTGCT+TGG - chr4.4:3066587-3066606 None:intergenic 50.0%
AGTCCACCCAAATTAGCTCC+GGG - chr4.4:3065749-3065768 None:intergenic 50.0%
CACAGGGATAGAGAACAAGG+GGG + chr4.4:3064752-3064771 MS.gene05912:intron 50.0%
CACTGTCTGTTACCTGCACT+TGG + chr4.4:3065578-3065597 MS.gene05912:intron 50.0%
CAGATTCTAACCCACTTGGG+TGG + chr4.4:3065659-3065678 MS.gene05912:intron 50.0%
CCAACTTCTTGAAGGACTGG+AGG - chr4.4:3065310-3065329 None:intergenic 50.0%
CCTCCAGTCCTTCAAGAAGT+TGG + chr4.4:3065307-3065326 MS.gene05912:CDS 50.0%
GAATCGAACGTGAGACCTTG+AGG - chr4.4:3065724-3065743 None:intergenic 50.0%
GATTCTCCCCGGAGCTAATT+TGG + chr4.4:3065739-3065758 MS.gene05912:intron 50.0%
GGAGACTCCTAGTACTACTC+TGG + chr4.4:3066591-3066610 MS.gene05912:CDS 50.0%
GGGAGTCGTAGCTGTTATTG+CGG - chr4.4:3066364-3066383 None:intergenic 50.0%
GGTGGATGAGCCCTAAACAA+GGG + chr4.4:3066128-3066147 MS.gene05912:intron 50.0%
GTACTTTCATTGCCGAGCCT+AGG + chr4.4:3064166-3064185 MS.gene05912:CDS 50.0%
GTCTCCTGCTTGGTATCAAC+AGG - chr4.4:3066577-3066596 None:intergenic 50.0%
! TGGTGGATGAGCCCTAAACA+AGG + chr4.4:3066127-3066146 MS.gene05912:intron 50.0%
ACAGCTACGACTCCCATGTC+TGG + chr4.4:3066369-3066388 MS.gene05912:CDS 55.0%
ACCACCAGATCCACCCAAGT+GGG - chr4.4:3065672-3065691 None:intergenic 55.0%
CTAACCCACTTGGGTGGATC+TGG + chr4.4:3065665-3065684 MS.gene05912:intron 55.0%
CTGCCACAGTTGCTAAGGGA+GGG + chr4.4:3066548-3066567 MS.gene05912:CDS 55.0%
GTCCACCCAAATTAGCTCCG+GGG - chr4.4:3065748-3065767 None:intergenic 55.0%
GTCTCACGTTCGATTCTCCC+CGG + chr4.4:3065728-3065747 MS.gene05912:intron 55.0%
GTGCCCTGTTGATACCAAGC+AGG + chr4.4:3066570-3066589 MS.gene05912:CDS 55.0%
TCTACGGCGAAGAGTGGAAG+AGG - chr4.4:3063959-3063978 None:intergenic 55.0%
! CGTCGGGACCTTTTCCTGAT+TGG + chr4.4:3064079-3064098 MS.gene05912:CDS 55.0%
! GTGGAGATAGTGGTGGTGAC+CGG + chr4.4:3064034-3064053 MS.gene05912:CDS 55.0%
! TGGAGATAGTGGTGGTGACC+GGG + chr4.4:3064035-3064054 MS.gene05912:CDS 55.0%
! TTGGGTGGATCTGGTGGTGT+TGG + chr4.4:3065674-3065693 MS.gene05912:intron 55.0%
!! GTGGTGTTGGCTTGAGACCT+TGG + chr4.4:3065687-3065706 MS.gene05912:intron 55.0%
ACCCACTTGGGTGGATCTGG+TGG + chr4.4:3065668-3065687 MS.gene05912:intron 60.0%
CACCACCAGATCCACCCAAG+TGG - chr4.4:3065673-3065692 None:intergenic 60.0%
CTCCCCGGAGCTAATTTGGG+TGG + chr4.4:3065743-3065762 MS.gene05912:intron 60.0%
GCACCCTCCCTTAGCAACTG+TGG - chr4.4:3066554-3066573 None:intergenic 60.0%
GCTGCCACAGTTGCTAAGGG+AGG + chr4.4:3066547-3066566 MS.gene05912:CDS 60.0%
TGGGACGGGCATATGAGGGT+TGG + chr4.4:3066165-3066184 MS.gene05912:intron 60.0%
TTGAAAGACTCCGGCGGAGG+TGG + chr4.4:3064000-3064019 MS.gene05912:CDS 60.0%
! AGATAGTGGTGGTGACCGGG+AGG + chr4.4:3064038-3064057 MS.gene05912:CDS 60.0%
!! GACGGTGGTGGAGATAGTGG+TGG + chr4.4:3064027-3064046 MS.gene05912:CDS 60.0%
!! GCTTTGAAAGACTCCGGCGG+AGG + chr4.4:3063997-3064016 MS.gene05912:CDS 60.0%
AAAGACTCCGGCGGAGGTGG+CGG + chr4.4:3064003-3064022 MS.gene05912:CDS 65.0%
! TAGTGGTGGTGACCGGGAGG+TGG + chr4.4:3064041-3064060 MS.gene05912:CDS 65.0%
!! GGCGACGGTGGTGGAGATAG+TGG + chr4.4:3064024-3064043 MS.gene05912:CDS 65.0%
! ACCGTCGCCGCCACCTCCGC+CGG - chr4.4:3064013-3064032 None:intergenic 80.0%
!! GGAGGTGGCGGCGACGGTGG+TGG + chr4.4:3064015-3064034 MS.gene05912:CDS 80.0%
!! TCCGGCGGAGGTGGCGGCGA+CGG + chr4.4:3064009-3064028 MS.gene05912:CDS 80.0%
!! GGCGGAGGTGGCGGCGACGG+TGG + chr4.4:3064012-3064031 MS.gene05912:CDS 85.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 3063802 3066624 3063802 ID=MS.gene05912
chr4.4 mRNA 3063802 3066624 3063802 ID=MS.gene05912.t1;Parent=MS.gene05912
chr4.4 exon 3063802 3064251 3063802 ID=MS.gene05912.t1.exon1;Parent=MS.gene05912.t1
chr4.4 CDS 3063802 3064251 3063802 ID=cds.MS.gene05912.t1;Parent=MS.gene05912.t1
chr4.4 exon 3065253 3065390 3065253 ID=MS.gene05912.t1.exon2;Parent=MS.gene05912.t1
chr4.4 CDS 3065253 3065390 3065253 ID=cds.MS.gene05912.t1;Parent=MS.gene05912.t1
chr4.4 exon 3065864 3065950 3065864 ID=MS.gene05912.t1.exon3;Parent=MS.gene05912.t1
chr4.4 CDS 3065864 3065950 3065864 ID=cds.MS.gene05912.t1;Parent=MS.gene05912.t1
chr4.4 exon 3066323 3066390 3066323 ID=MS.gene05912.t1.exon4;Parent=MS.gene05912.t1
chr4.4 CDS 3066323 3066390 3066323 ID=cds.MS.gene05912.t1;Parent=MS.gene05912.t1
chr4.4 exon 3066480 3066624 3066480 ID=MS.gene05912.t1.exon5;Parent=MS.gene05912.t1
chr4.4 CDS 3066480 3066624 3066480 ID=cds.MS.gene05912.t1;Parent=MS.gene05912.t1
Gene Sequence

>MS.gene05912

ATGCCATCATCATTCTCTATCTTCCCATCACCACCTTCACTTCAAACCCCTAACTCCAACCATGCTCATCTCTTCAATCCAATCAAATTCCCTAAATTCCATTTCAATTCAAGAACACTCTATTCTCACCCCAACTTTCCCCATCTCTACAAAACCTCTTCCACTCTTCGCCGTAGAAGAATTCCATGTAGTAAAGCTTTGAAAGACTCCGGCGGAGGTGGCGGCGACGGTGGTGGAGATAGTGGTGGTGACCGGGAGGTGGATAAGAAAAATGGGTCGTCGGGACCTTTTCCTGATTGGTTGAATTTCACTTCCGATGATGCGAAAACGGTTTTTGCTGCTCTTGCTATATCACTTGCGTTTCGTACTTTCATTGCCGAGCCTAGGTTCATTCCTTCTTTGTCAATGTATCCTACTTATGATGTTGGAGATCGAATTGTTGCTGAAAAGGTACTTTTTTTCTTCATTTCAATCCAAGAGGGTTTCAATGAAATGAACTTCTTACTGGCTTTGTATTTGCTTGATGTTGTATTTAACTACTCCAAAAGACAAATGAGATAAAAAAAAAAAAAACACTAAGCTATGTTTAGTTCAAATATTTCATTTTCAGATCGAAAATGAAAAATATAAACAGTAATGATAGTTATGTAGTAGCGCCGACACTTAAGATTGAAGACGAGTCTGATCGAATACTAGTTACATTCAAATATTTCATTTTCTCAAATTATTTACGGTATCAACGTGTTTTGCATCGGTGATTCATAGAAGTTCAAGTAAATATATATGGCCATGCTATTGTTATAGGTTTTGACATCAGCATCCAATTAGATAGACTCTCTATAATGGTGCATCTCTTTGTAGATTTTAGATGCTTCTCCATTTGAAAAACTTCACCTATTTGTTGGAAGATGGGGGTATACTTCTATATTCAGTGGCTTTTCTGTAACATTCACAGGGATAGAGAACAAGGGGGCTGAGTTGTTGTTTTCATTTTCCAAACACTAATTTTGAATTGATTGACATAAGTTTACATGGAATGGTTAGATTATGACGTTCGTGCGAGTATTGGTGATTTGAATGTTGATTCAGATTCAGAACATATATTATGTTTCAAGTTTGCTGTGCATCATAGATTTTTGTTCATTGTATTTCATAGTGCACTAATTTGATACAATATTGATTTTCATACATACTCGGTTAATTCTTAGTTCATGTTGTTGAAGCATATTAATTGCTGGCTTAGTTATTTACTGATAACAGTCTCATAGCTGTAGCTATTTGTTGTCTTGAGAATTGTTATTGCAAGTCTCAAAACTCAAATACTCACCGGATAGAATCATGTGGATTTATGGCTATACCCCTTTAATAGATTTGACATCAAATGTCAACTAGACTTTCTGTTATGAACTTATGATGCATCTCTTAGTAATGATAAATCCTCATGTTTTCAGGTTTCATATTATTTTAGAAAGCCGTGTGCAAATGATATCGTGATATTTAAAAGCCCTCCAGTCCTTCAAGAAGTTGGGTACACTGATGATGATGTTTTCATAAAACGTGTTGTTGCAAAGGAAGGTGATGTCGTAGAGGTATGATATTTGGAGATGAACATTCATGCTTAGCTTTTTGTTCAATTCCTTGTTGAGCTAACGTCATTCAAGGTCTTGTCATTATCTTTTGTTTGTCGATGACTTATTTTTACTCTTGCTTGATTAAAGTTTTTAGTGGAAGGTTAATCTGTTTTAACGATTAAGGTTTGGTTAACTGACTTATGCTCACTGTCTGTTACCTGCACTTGGAAGTTTGAAATTTGCATGAATGTAGTATATTTCATCAATATTCAATTGTAACTTCAGTCAGATTCTAACCCACTTGGGTGGATCTGGTGGTGTTGGCTTGAGACCTTGGAGTGTGCTTATCCTCAAGGTCTCACGTTCGATTCTCCCCGGAGCTAATTTGGGTGGACTAATTTAGTTTCTTCAAAAAAAACTTGAGTCAGATTCTTGTTGTGTTTGATTCAGTGCCTTGGTGTATTAAATGTGAGCAATTGAATTATTTGCAGGTCCGTAATGGGCATCTAATAGTTAATGGGGTTGAGAGGGATGAGAAGTTTATCAATGAACAACCGAAGTATGAGATGAAACCCACAGTAAGTTCTACCCTTTTATATTGTACTCAGTTTTCCTCTTATTTTCTTTATTAGTCCTATGCGTAATTAATGTACAAAACAATTTTTAGAATAATTACGCATGTCATTCTTTGAGAGAATGGACTAAAAGACGAAGTTATGTCAAGAAAGCATAATCAAATTTAATATATACGCTGTGGTGGATGAGCCCTAAACAAGGGTTATGAAGATAATTTGGGACGGGCATATGAGGGTTGGTCGTCCTATTGTGTTGTCTTGTGCTTGATTGTGTTTAAGGCGTGATCATTGAGCTCAGACCGTTTCTGTCATTGCACAAAAGTTCAGAACTAGTTGAATTTTTATTTAGTTTAATAATATTATTTGCTTTTGCAGCGTGTTCCTGAGAACTCCGTTTTTGTGATGGGAGACAACCGCAATAACAGCTACGACTCCCATGTCTGGTAAAATTTGTTTGAATTATATGCATTATGTACACTATTCTTACATCTTATGAGTTATTTCCTTACAATGTTAAATGCAATTTTCTTAGGGGTCCCCTGCCAGCCAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGCTGCCACAGTTGCTAAGGGAGGGTGCCCTGTTGATACCAAGCAGGAGACTCCTAGTACTACTCTGGCATCTCAATGA

Protein sequence

>MS.gene05912.t1

MPSSFSIFPSPPSLQTPNSNHAHLFNPIKFPKFHFNSRTLYSHPNFPHLYKTSSTLRRRRIPCSKALKDSGGGGGDGGGDSGGDREVDKKNGSSGPFPDWLNFTSDDAKTVFAALAISLAFRTFIAEPRFIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVRNGHLIVNGVERDEKFINEQPKYEMKPTRVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAATVAKGGCPVDTKQETPSTTLASQ