Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92241.t1 | XP_003595876.1 | 95.1 | 283 | 10 | 1 | 1 | 283 | 1 | 279 | 4.60E-140 | 507.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92241.t1 | O32107 | 33.6 | 122 | 68 | 2 | 88 | 209 | 28 | 136 | 1.3e-10 | 68.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92241.t1 | G7IT34 | 95.1 | 283 | 10 | 1 | 1 | 283 | 1 | 279 | 3.3e-140 | 507.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene92241 | 0.80983 | 1.56E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene92241 | 0.801564 | 8.48E-49 | -1.69E-46 |
| MS.gene052469 | MS.gene92241 | 0.817364 | 3.43E-52 | -1.69E-46 |
| MS.gene055539 | MS.gene92241 | 0.823703 | 1.20E-53 | -1.69E-46 |
| MS.gene056659 | MS.gene92241 | 0.805122 | 1.55E-49 | -1.69E-46 |
| MS.gene058090 | MS.gene92241 | 0.803439 | 3.48E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92241.t1 | MTR_2g062820 | 95.053 | 283 | 10 | 1 | 1 | 283 | 1 | 279 | 0.0 | 540 |
| MS.gene92241.t1 | MTR_3g085670 | 40.367 | 109 | 64 | 1 | 62 | 170 | 14 | 121 | 9.82e-20 | 84.3 |
| MS.gene92241.t1 | MTR_2g087870 | 36.607 | 112 | 70 | 1 | 65 | 176 | 26 | 136 | 6.03e-18 | 79.7 |
| MS.gene92241.t1 | MTR_2g087870 | 40.000 | 100 | 59 | 1 | 65 | 164 | 26 | 124 | 7.87e-16 | 73.2 |
| MS.gene92241.t1 | MTR_7g117385 | 31.356 | 118 | 80 | 1 | 59 | 176 | 104 | 220 | 1.20e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92241.t1 | AT3G12685 | 45.570 | 237 | 70 | 5 | 46 | 282 | 35 | 212 | 5.18e-59 | 187 |
| MS.gene92241.t1 | AT1G24350 | 38.679 | 106 | 64 | 1 | 65 | 170 | 22 | 126 | 1.28e-18 | 80.9 |
| MS.gene92241.t1 | AT1G24350 | 38.679 | 106 | 64 | 1 | 65 | 170 | 22 | 126 | 1.30e-18 | 80.9 |
| MS.gene92241.t1 | AT1G24350 | 38.679 | 106 | 64 | 1 | 65 | 170 | 22 | 126 | 1.88e-18 | 80.5 |
| MS.gene92241.t1 | AT1G24350 | 38.679 | 106 | 64 | 1 | 65 | 170 | 22 | 126 | 5.21e-18 | 79.7 |
| MS.gene92241.t1 | AT1G24350 | 38.679 | 106 | 64 | 1 | 65 | 170 | 22 | 126 | 6.18e-18 | 80.1 |
| MS.gene92241.t1 | AT3G21610 | 38.318 | 107 | 65 | 1 | 64 | 170 | 32 | 137 | 9.45e-18 | 79.3 |
| MS.gene92241.t1 | AT1G67600 | 36.792 | 106 | 66 | 1 | 65 | 170 | 18 | 122 | 1.63e-16 | 75.5 |
| MS.gene92241.t1 | AT3G21610 | 41.772 | 79 | 46 | 0 | 92 | 170 | 7 | 85 | 1.50e-15 | 72.0 |
| MS.gene92241.t1 | AT3G61770 | 32.203 | 118 | 79 | 1 | 59 | 176 | 134 | 250 | 4.10e-14 | 71.2 |
Find 55 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAGACCCTCTTTATATT+TGG | 0.178412 | 2.1:-33161948 | None:intergenic |
| GTTCCAAGAAACCACTTCTT+TGG | 0.226096 | 2.1:+33162030 | MS.gene92241:CDS |
| CGCTCAAATTGCTCATAATA+AGG | 0.268738 | 2.1:+33158509 | MS.gene92241:CDS |
| GTTCCAAAGAAGTGGTTTCT+TGG | 0.334368 | 2.1:-33162033 | None:intergenic |
| TTAAATCAGGAAGCATAATA+AGG | 0.350575 | 2.1:+33162083 | MS.gene92241:CDS |
| ATTTCTTCTCTTGCTGCTGC+TGG | 0.351086 | 2.1:+33158471 | MS.gene92241:CDS |
| TACAGAAACACGGAAGTAAA+TGG | 0.351210 | 2.1:-33159170 | None:intergenic |
| GCTGGAGTTTCAATGGCAAT+TGG | 0.360865 | 2.1:+33159134 | MS.gene92241:CDS |
| AAGTGGTTTCTTGGAACAAA+AGG | 0.368554 | 2.1:-33162024 | None:intergenic |
| CTTTATATTTGGAATGTACA+TGG | 0.402977 | 2.1:-33161937 | None:intergenic |
| GCTTAGGTTCTGATTGCAGC+TGG | 0.410074 | 2.1:+33159116 | MS.gene92241:intron |
| GTGGTAGCTGGTGGTTTACT+TGG | 0.410497 | 2.1:+33162223 | MS.gene92241:CDS |
| AATTGTTGATGATGAAGAAA+TGG | 0.414445 | 2.1:-33158405 | None:intergenic |
| CAGGGTGTAAGAAGAGAAGT+AGG | 0.415373 | 2.1:+33161866 | MS.gene92241:intron |
| GTGGCTTGTGCAACATTACT+TGG | 0.416239 | 2.1:+33159377 | MS.gene92241:CDS |
| AGTGAGGGAAATTGAGAAGA+AGG | 0.418480 | 2.1:-33158369 | None:intergenic |
| CAACAAACTACTTCTCCAAA+TGG | 0.418502 | 2.1:+33161907 | MS.gene92241:CDS |
| GATTGCAGCTGGAGTTTCAA+TGG | 0.421077 | 2.1:+33159127 | MS.gene92241:CDS |
| CTGGAGTTTCAATGGCAATT+GGG | 0.423404 | 2.1:+33159135 | MS.gene92241:CDS |
| GGTCTTGCAGTTGTGTATGC+TGG | 0.423581 | 2.1:+33159554 | MS.gene92241:CDS |
| ACAAATGTATTAGTTAAATC+AGG | 0.423899 | 2.1:+33162070 | MS.gene92241:CDS |
| GTACATGGTTGACATCCATT+TGG | 0.431928 | 2.1:-33161922 | None:intergenic |
| TCCTTTCTACGAAAACTGAA+TGG | 0.434415 | 2.1:-33158429 | None:intergenic |
| ACCATCAGCAACCAACTTTG+AGG | 0.436219 | 2.1:-33162158 | None:intergenic |
| CATACAGAAGAGTGTGAAGA+AGG | 0.444111 | 2.1:-33159239 | None:intergenic |
| TTTACTTCCGTGTTTCTGTA+TGG | 0.449321 | 2.1:+33159173 | MS.gene92241:CDS |
| TCTGATTATGTATGATGCTC+AGG | 0.450552 | 2.1:+33159577 | MS.gene92241:CDS |
| TTTGGTGGATTGGATGATCC+AGG | 0.472553 | 2.1:-33161980 | None:intergenic |
| ATCAAGGCTCTTATTCAAGC+TGG | 0.483515 | 2.1:+33159209 | MS.gene92241:CDS |
| CTGAATTATCTTACCTCTCA+AGG | 0.488483 | 2.1:-33159400 | None:intergenic |
| AGTGGTTTCTTGGAACAAAA+GGG | 0.494613 | 2.1:-33162023 | None:intergenic |
| TGCAAAAGAAACCTCAAAGT+TGG | 0.498213 | 2.1:+33162147 | MS.gene92241:CDS |
| TGGCAAAGAGTTTGATATCA+AGG | 0.498368 | 2.1:+33159193 | MS.gene92241:CDS |
| ACCTCAAAGTTGGTTGCTGA+TGG | 0.499074 | 2.1:+33162157 | MS.gene92241:CDS |
| TGGATTTCTTTGTTTGAGTG+AGG | 0.504915 | 2.1:-33158385 | None:intergenic |
| TGTACATTCCAAATATAAAG+AGG | 0.527963 | 2.1:+33161940 | MS.gene92241:CDS |
| AGCAAGAGAAGAAATTCTAA+AGG | 0.529822 | 2.1:-33158463 | None:intergenic |
| CTGCCATTAAAAGAAACTGT+TGG | 0.534103 | 2.1:+33162184 | MS.gene92241:CDS |
| ACATTTGTATTAGCTTGTTG+TGG | 0.534702 | 2.1:-33162055 | None:intergenic |
| GGATTTCTTTGTTTGAGTGA+GGG | 0.539654 | 2.1:-33158384 | None:intergenic |
| CAACATTACTTGGCCTTGAG+AGG | 0.541258 | 2.1:+33159387 | MS.gene92241:CDS |
| ACTGAGGTTGAAGTGGTAGC+TGG | 0.555392 | 2.1:+33162211 | MS.gene92241:CDS |
| TTGTTGTGGTTCCAAAGAAG+TGG | 0.567196 | 2.1:-33162041 | None:intergenic |
| TGCATCTTCTAAGAAATCAG+AGG | 0.571365 | 2.1:-33162128 | None:intergenic |
| AGGGTGTAAGAAGAGAAGTA+GGG | 0.572177 | 2.1:+33161867 | MS.gene92241:intron |
| AAGGCTCTTATTCAAGCTGG+AGG | 0.574041 | 2.1:+33159212 | MS.gene92241:CDS |
| CATAATAAGGCAAAGTGACG+AGG | 0.594995 | 2.1:+33162096 | MS.gene92241:CDS |
| GTACATTCCAAATATAAAGA+GGG | 0.618220 | 2.1:+33161941 | MS.gene92241:CDS |
| CTCTTTGCCATACAGAAACA+CGG | 0.620649 | 2.1:-33159180 | None:intergenic |
| ATACAGAAGAGTGTGAAGAA+GGG | 0.627523 | 2.1:-33159238 | None:intergenic |
| AGGCTCTTATTCAAGCTGGA+GGG | 0.631515 | 2.1:+33159213 | MS.gene92241:CDS |
| TGGTCATACTGAGGTTGAAG+TGG | 0.656520 | 2.1:+33162204 | MS.gene92241:CDS |
| GGTCTGATAAACTCTCAACC+TGG | 0.659859 | 2.1:+33161962 | MS.gene92241:CDS |
| GAGGTTGAAGTGGTAGCTGG+TGG | 0.665793 | 2.1:+33162214 | MS.gene92241:CDS |
| AGAAACTGTTGGTCATACTG+AGG | 0.680359 | 2.1:+33162195 | MS.gene92241:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGATTATGAATTTATTTA+TGG | + | chr2.1:33161472-33161491 | MS.gene92241:intron | 10.0% |
| !!! | GGTTTTATATAATATAAATA+AGG | - | chr2.1:33161755-33161774 | None:intergenic | 10.0% |
| !! | AAACTAAATAACATGAAAAA+TGG | - | chr2.1:33159623-33159642 | None:intergenic | 15.0% |
| !! | AACTAAATAACATGAAAAAT+GGG | - | chr2.1:33159622-33159641 | None:intergenic | 15.0% |
| !! | TATGAATTTATTTATGGTTA+TGG | + | chr2.1:33161478-33161497 | MS.gene92241:intron | 15.0% |
| !!! | AGGATTTTTTTTTTTTTTTG+CGG | - | chr2.1:33161165-33161184 | None:intergenic | 15.0% |
| !!! | CAAATCTTTTTTATAAGAAA+AGG | - | chr2.1:33160398-33160417 | None:intergenic | 15.0% |
| !!! | TAGTTGTTTAAATTTTCTTT+TGG | + | chr2.1:33159344-33159363 | MS.gene92241:intron | 15.0% |
| !!! | TTTTTTCATGTTAATGTTAA+TGG | + | chr2.1:33161414-33161433 | MS.gene92241:intron | 15.0% |
| !! | AAAAACAAGTGATACAAAAA+TGG | - | chr2.1:33158539-33158558 | None:intergenic | 20.0% |
| !! | AAAACAAGTGATACAAAAAT+GGG | - | chr2.1:33158538-33158557 | None:intergenic | 20.0% |
| !! | AATAAGATTTCTATGTTGTA+AGG | - | chr2.1:33160493-33160512 | None:intergenic | 20.0% |
| !! | ACAAATGTATTAGTTAAATC+AGG | + | chr2.1:33162070-33162089 | MS.gene92241:CDS | 20.0% |
| !! | ATCAATGATTAAACTATTTG+TGG | + | chr2.1:33159795-33159814 | MS.gene92241:intron | 20.0% |
| !! | ATTCATAATCATAAATACAG+AGG | - | chr2.1:33161465-33161484 | None:intergenic | 20.0% |
| !! | TCAAAGAATATTATAAGTAG+TGG | + | chr2.1:33159881-33159900 | MS.gene92241:intron | 20.0% |
| !! | TGAAAAATGTGTTTATAAGT+GGG | + | chr2.1:33158963-33158982 | MS.gene92241:intron | 20.0% |
| !! | TTGAAAAATGTGTTTATAAG+TGG | + | chr2.1:33158962-33158981 | MS.gene92241:intron | 20.0% |
| !! | TTTAGATTACTAACTAATTC+AGG | + | chr2.1:33160260-33160279 | MS.gene92241:intron | 20.0% |
| !!! | AATTTACTTATTTCTTGTGA+AGG | + | chr2.1:33160632-33160651 | MS.gene92241:intron | 20.0% |
| !!! | GTTTAAATTTTCTTTTGGAT+AGG | + | chr2.1:33159349-33159368 | MS.gene92241:intron | 20.0% |
| ! | AAACTTAATGAAGGAATCTT+AGG | + | chr2.1:33159713-33159732 | MS.gene92241:intron | 25.0% |
| ! | AACACAAAAATGAAGAAAAC+TGG | - | chr2.1:33161261-33161280 | None:intergenic | 25.0% |
| ! | AACAGAAACAGAATGATAAA+AGG | - | chr2.1:33161783-33161802 | None:intergenic | 25.0% |
| ! | ACAATATTCTTCCATTAGTT+AGG | - | chr2.1:33160231-33160250 | None:intergenic | 25.0% |
| ! | ACAGAATGATAAAAGGATAA+AGG | - | chr2.1:33161776-33161795 | None:intergenic | 25.0% |
| ! | AGCAAATATACTCAATATCT+TGG | - | chr2.1:33159760-33159779 | None:intergenic | 25.0% |
| ! | CAATATTCTTCCATTAGTTA+GGG | - | chr2.1:33160230-33160249 | None:intergenic | 25.0% |
| ! | GAAAAATGTGTTTATAAGTG+GGG | + | chr2.1:33158964-33158983 | MS.gene92241:intron | 25.0% |
| ! | GTACATTCCAAATATAAAGA+GGG | + | chr2.1:33161941-33161960 | MS.gene92241:CDS | 25.0% |
| ! | TATCACAGATGAAAACTTAT+TGG | + | chr2.1:33160770-33160789 | MS.gene92241:intron | 25.0% |
| ! | TCAAATAAGTCAATCAAAAG+AGG | - | chr2.1:33160805-33160824 | None:intergenic | 25.0% |
| ! | TCATTAACATTTCAACCTAT+AGG | + | chr2.1:33160073-33160092 | MS.gene92241:intron | 25.0% |
| ! | TGTACATTCCAAATATAAAG+AGG | + | chr2.1:33161940-33161959 | MS.gene92241:CDS | 25.0% |
| ! | TGTTTATGAACCTAGTTTAA+TGG | + | chr2.1:33161520-33161539 | MS.gene92241:intron | 25.0% |
| ! | TGTTTATTATACAAATGCAG+AGG | + | chr2.1:33159512-33159531 | MS.gene92241:intron | 25.0% |
| ! | TTTAAAGACTTCTTTATCTG+AGG | - | chr2.1:33160314-33160333 | None:intergenic | 25.0% |
| !! | AGATAAAGAAGTCTTTAAAG+AGG | + | chr2.1:33160315-33160334 | MS.gene92241:intron | 25.0% |
| !! | CTTTATATTTGGAATGTACA+TGG | - | chr2.1:33161940-33161959 | None:intergenic | 25.0% |
| !! | GATAAAGAAGTCTTTAAAGA+GGG | + | chr2.1:33160316-33160335 | MS.gene92241:intron | 25.0% |
| !! | TGATTTTCTCAAATAGTTAC+TGG | + | chr2.1:33158727-33158746 | MS.gene92241:intron | 25.0% |
| !! | TTAAATCAGGAAGCATAATA+AGG | + | chr2.1:33162083-33162102 | MS.gene92241:CDS | 25.0% |
| !! | TTTGTGATATTTTTCTGCTT+AGG | + | chr2.1:33159100-33159119 | MS.gene92241:intron | 25.0% |
| !!! | AATATAAATAAGGCCTTGTT+CGG | - | chr2.1:33161745-33161764 | None:intergenic | 25.0% |
| !!! | AATTGTTGATGATGAAGAAA+TGG | - | chr2.1:33158408-33158427 | None:intergenic | 25.0% |
| !!! | ATTGAACATGATTGTTTTGT+GGG | + | chr2.1:33161804-33161823 | MS.gene92241:intron | 25.0% |
| !!! | GTTGTTTTATTTGCTGAATT+GGG | + | chr2.1:33159064-33159083 | MS.gene92241:intron | 25.0% |
| !!! | TATTGAACATGATTGTTTTG+TGG | + | chr2.1:33161803-33161822 | MS.gene92241:intron | 25.0% |
| !!! | TGTTGTTTTATTTGCTGAAT+TGG | + | chr2.1:33159063-33159082 | MS.gene92241:intron | 25.0% |
| AAAACATTGTCCATAGTCAA+TGG | + | chr2.1:33160708-33160727 | MS.gene92241:intron | 30.0% | |
| AAAAGTGATCTATACGATGA+GGG | - | chr2.1:33158996-33159015 | None:intergenic | 30.0% | |
| AAACTATATCTCATCCAATG+TGG | - | chr2.1:33158944-33158963 | None:intergenic | 30.0% | |
| AAAGCTTAAAAGCCTTCAAT+AGG | + | chr2.1:33160440-33160459 | MS.gene92241:intron | 30.0% | |
| AATATATCCTCTACGTATAC+AGG | - | chr2.1:33160526-33160545 | None:intergenic | 30.0% | |
| ACGATCATACAATTCAGAAT+GGG | + | chr2.1:33161027-33161046 | MS.gene92241:intron | 30.0% | |
| AGCAAGAGAAGAAATTCTAA+AGG | - | chr2.1:33158466-33158485 | None:intergenic | 30.0% | |
| AGGTTCTACAAAGAAAAGAA+TGG | + | chr2.1:33160111-33160130 | MS.gene92241:intron | 30.0% | |
| AGTTTAATGGTGTGATTTAG+AGG | + | chr2.1:33161533-33161552 | MS.gene92241:intron | 30.0% | |
| ATAATTACAGGGTGAACAAA+AGG | - | chr2.1:33160676-33160695 | None:intergenic | 30.0% | |
| ATAGGAAACTTAGCAAATGA+AGG | + | chr2.1:33160091-33160110 | MS.gene92241:intron | 30.0% | |
| CTAAATCACACCATTAAACT+AGG | - | chr2.1:33161533-33161552 | None:intergenic | 30.0% | |
| GAAATGAAAGTAGGATTTAC+TGG | - | chr2.1:33159281-33159300 | None:intergenic | 30.0% | |
| GACTATGTCAAACTTAATGA+AGG | + | chr2.1:33159704-33159723 | MS.gene92241:intron | 30.0% | |
| GAGTCTATCAAATATTCGTT+AGG | + | chr2.1:33158841-33158860 | MS.gene92241:intron | 30.0% | |
| GTGTGAAGTAAACAACAAAA+GGG | - | chr2.1:33160607-33160626 | None:intergenic | 30.0% | |
| TAAGTATTCGTGAGACTATT+TGG | + | chr2.1:33160840-33160859 | MS.gene92241:intron | 30.0% | |
| TACTGTTAGTAAACAGGAAA+TGG | + | chr2.1:33159835-33159854 | MS.gene92241:intron | 30.0% | |
| TATCAGACCCTCTTTATATT+TGG | - | chr2.1:33161951-33161970 | None:intergenic | 30.0% | |
| TATGTTGTAAGGATTGTTTC+AGG | - | chr2.1:33160482-33160501 | None:intergenic | 30.0% | |
| TATTTGTGGAATTCTTACCA+TGG | + | chr2.1:33159809-33159828 | MS.gene92241:intron | 30.0% | |
| TGAAAACTTATTGGTACTTG+TGG | + | chr2.1:33160779-33160798 | MS.gene92241:intron | 30.0% | |
| TGTGTGAAGTAAACAACAAA+AGG | - | chr2.1:33160608-33160627 | None:intergenic | 30.0% | |
| TTATAGAGATACGCTCAAAA+TGG | - | chr2.1:33160903-33160922 | None:intergenic | 30.0% | |
| TTTATGTCTCTGCAAATCTT+GGG | + | chr2.1:33158556-33158575 | MS.gene92241:intron | 30.0% | |
| ! | AAAAGAATGGATGTCACTTA+GGG | + | chr2.1:33160124-33160143 | MS.gene92241:intron | 30.0% |
| ! | AAAGTAGGATTTACTGGTTA+AGG | - | chr2.1:33159275-33159294 | None:intergenic | 30.0% |
| ! | AAGTAGGATTTACTGGTTAA+GGG | - | chr2.1:33159274-33159293 | None:intergenic | 30.0% |
| ! | TCATTTGCTAAGTTTCCTAT+AGG | - | chr2.1:33160091-33160110 | None:intergenic | 30.0% |
| ! | TGACCAACAGTTTCTTTTAA+TGG | - | chr2.1:33162190-33162209 | None:intergenic | 30.0% |
| ! | TTTATCTCAGACATGGATTA+TGG | + | chr2.1:33160181-33160200 | MS.gene92241:intron | 30.0% |
| ! | TTTTATGTCTCTGCAAATCT+TGG | + | chr2.1:33158555-33158574 | MS.gene92241:intron | 30.0% |
| ! | TTTTCTTGAGTTTCTGCTTT+TGG | - | chr2.1:33162001-33162020 | None:intergenic | 30.0% |
| !! | ACATTTGTATTAGCTTGTTG+TGG | - | chr2.1:33162058-33162077 | None:intergenic | 30.0% |
| !! | AGATCTTAACTTGTTGATCA+CGG | - | chr2.1:33161616-33161635 | None:intergenic | 30.0% |
| !! | ATCGTATAGATCACTTTTGT+AGG | + | chr2.1:33158998-33159017 | MS.gene92241:intron | 30.0% |
| !!! | GTTTACTTGGATTTTTGGTT+GGG | + | chr2.1:33162236-33162255 | MS.gene92241:CDS | 30.0% |
| AAGTGGTTTCTTGGAACAAA+AGG | - | chr2.1:33162027-33162046 | None:intergenic | 35.0% | |
| ACAACTGCAAGACCAAAAAT+GGG | - | chr2.1:33159548-33159567 | None:intergenic | 35.0% | |
| ACATACACATAACACAACAC+GGG | - | chr2.1:33158756-33158775 | None:intergenic | 35.0% | |
| ACCAAGAAAATTCCCCAATT+CGG | + | chr2.1:33161134-33161153 | MS.gene92241:intron | 35.0% | |
| ACCAGTGAGCATTAAAAAAC+AGG | - | chr2.1:33161185-33161204 | None:intergenic | 35.0% | |
| ACCGTTAAGGTTGTATTCTT+GGG | + | chr2.1:33161066-33161085 | MS.gene92241:intron | 35.0% | |
| AGTCTCACGAATACTTATGT+CGG | - | chr2.1:33160837-33160856 | None:intergenic | 35.0% | |
| AGTGGTTTCTTGGAACAAAA+GGG | - | chr2.1:33162026-33162045 | None:intergenic | 35.0% | |
| ATACGCTCAAAATGGCTTAT+GGG | - | chr2.1:33160895-33160914 | None:intergenic | 35.0% | |
| ATTCGTGAGACTATTTGGAA+GGG | + | chr2.1:33160845-33160864 | MS.gene92241:intron | 35.0% | |
| CAAAAGTGATCTATACGATG+AGG | - | chr2.1:33158997-33159016 | None:intergenic | 35.0% | |
| CAACAAACTACTTCTCCAAA+TGG | + | chr2.1:33161907-33161926 | MS.gene92241:CDS | 35.0% | |
| CACATACACATAACACAACA+CGG | - | chr2.1:33158757-33158776 | None:intergenic | 35.0% | |
| CACGATCATACAATTCAGAA+TGG | + | chr2.1:33161026-33161045 | MS.gene92241:intron | 35.0% | |
| CCTATACAAATGAGACCAAA+AGG | - | chr2.1:33160028-33160047 | None:intergenic | 35.0% | |
| CGCTCAAATTGCTCATAATA+AGG | + | chr2.1:33158509-33158528 | MS.gene92241:CDS | 35.0% | |
| CGTATCTCTATAAGTTCTTC+AGG | + | chr2.1:33160910-33160929 | MS.gene92241:intron | 35.0% | |
| CTGAATTATCTTACCTCTCA+AGG | - | chr2.1:33159403-33159422 | None:intergenic | 35.0% | |
| CTGCCATTAAAAGAAACTGT+TGG | + | chr2.1:33162184-33162203 | MS.gene92241:CDS | 35.0% | |
| GAATCCTAGCATAGTCAAAA+GGG | - | chr2.1:33159673-33159692 | None:intergenic | 35.0% | |
| GATATGTGTCAGTCAGATAA+TGG | - | chr2.1:33158684-33158703 | None:intergenic | 35.0% | |
| GGACTTATTTATCTCAGACA+TGG | + | chr2.1:33160174-33160193 | MS.gene92241:intron | 35.0% | |
| GGCATAGATGAAATGAAAGT+AGG | - | chr2.1:33159290-33159309 | None:intergenic | 35.0% | |
| GTGAAACAACACTATTCAAG+TGG | - | chr2.1:33159311-33159330 | None:intergenic | 35.0% | |
| GTTTACTAACAGTAACACCA+TGG | - | chr2.1:33159829-33159848 | None:intergenic | 35.0% | |
| TAAGGTTGTATTCTTGGGAT+CGG | + | chr2.1:33161071-33161090 | MS.gene92241:intron | 35.0% | |
| TACAGAAACACGGAAGTAAA+TGG | - | chr2.1:33159173-33159192 | None:intergenic | 35.0% | |
| TACCGTTAAGGTTGTATTCT+TGG | + | chr2.1:33161065-33161084 | MS.gene92241:intron | 35.0% | |
| TATTCGTGAGACTATTTGGA+AGG | + | chr2.1:33160844-33160863 | MS.gene92241:intron | 35.0% | |
| TCAATAGGATAGCCTATTGA+AGG | - | chr2.1:33160455-33160474 | None:intergenic | 35.0% | |
| TCAGAGTGAGGATAATTACA+GGG | - | chr2.1:33160687-33160706 | None:intergenic | 35.0% | |
| TCCCAAGAATACAACCTTAA+CGG | - | chr2.1:33161070-33161089 | None:intergenic | 35.0% | |
| TCCTTTCTACGAAAACTGAA+TGG | - | chr2.1:33158432-33158451 | None:intergenic | 35.0% | |
| TCTGATTATGTATGATGCTC+AGG | + | chr2.1:33159577-33159596 | MS.gene92241:CDS | 35.0% | |
| TGCAAAAGAAACCTCAAAGT+TGG | + | chr2.1:33162147-33162166 | MS.gene92241:CDS | 35.0% | |
| TGGCAAAGAGTTTGATATCA+AGG | + | chr2.1:33159193-33159212 | MS.gene92241:CDS | 35.0% | |
| TTGACATAGTCTAAGTACAG+TGG | - | chr2.1:33159695-33159714 | None:intergenic | 35.0% | |
| TTGTAGAATCGTGAGTATGA+TGG | + | chr2.1:33160996-33161015 | MS.gene92241:intron | 35.0% | |
| ! | ACGTCTTTGAGAACATGTTT+AGG | - | chr2.1:33158804-33158823 | None:intergenic | 35.0% |
| ! | ACTGATTTCTGTGATTTGCA+GGG | + | chr2.1:33161848-33161867 | MS.gene92241:intron | 35.0% |
| ! | ATACAGAAGAGTGTGAAGAA+GGG | - | chr2.1:33159241-33159260 | None:intergenic | 35.0% |
| ! | ATCGTATCAAACACTCCTTT+TGG | + | chr2.1:33160010-33160029 | MS.gene92241:intron | 35.0% |
| ! | CCTTTTGGTCTCATTTGTAT+AGG | + | chr2.1:33160025-33160044 | MS.gene92241:intron | 35.0% |
| ! | GAAAAGAATGGATGTCACTT+AGG | + | chr2.1:33160123-33160142 | MS.gene92241:intron | 35.0% |
| ! | GGATTTCTTTGTTTGAGTGA+GGG | - | chr2.1:33158387-33158406 | None:intergenic | 35.0% |
| ! | TAGACTTAAGCCATTGACTA+TGG | - | chr2.1:33160721-33160740 | None:intergenic | 35.0% |
| ! | TCCATTCAGTTTTCGTAGAA+AGG | + | chr2.1:33158428-33158447 | MS.gene92241:CDS | 35.0% |
| ! | TGCATCTTCTAAGAAATCAG+AGG | - | chr2.1:33162131-33162150 | None:intergenic | 35.0% |
| ! | TGGATTTCTTTGTTTGAGTG+AGG | - | chr2.1:33158388-33158407 | None:intergenic | 35.0% |
| ! | TGGTGGTTTACTTGGATTTT+TGG | + | chr2.1:33162231-33162250 | MS.gene92241:CDS | 35.0% |
| ! | TTAAGTTGCTTATCCGAACA+AGG | + | chr2.1:33161729-33161748 | MS.gene92241:intron | 35.0% |
| ! | TTTACTTCCGTGTTTCTGTA+TGG | + | chr2.1:33159173-33159192 | MS.gene92241:CDS | 35.0% |
| ! | TTTTTAATGCTCACTGGTGT+GGG | + | chr2.1:33161187-33161206 | MS.gene92241:intron | 35.0% |
| !! | TCAGTTATGCTGACTTAGTA+TGG | + | chr2.1:33159419-33159438 | MS.gene92241:intron | 35.0% |
| !! | TGGTGTTACTGTTAGTAAAC+AGG | + | chr2.1:33159829-33159848 | MS.gene92241:intron | 35.0% |
| !!! | AGGCTACTTTTACACACTAT+CGG | + | chr2.1:33158861-33158880 | MS.gene92241:intron | 35.0% |
| !!! | GGTTTACTTGGATTTTTGGT+TGG | + | chr2.1:33162235-33162254 | MS.gene92241:CDS | 35.0% |
| !!! | TCCTGTTTTTTAATGCTCAC+TGG | + | chr2.1:33161181-33161200 | MS.gene92241:intron | 35.0% |
| !!! | TTTTTTAATGCTCACTGGTG+TGG | + | chr2.1:33161186-33161205 | MS.gene92241:intron | 35.0% |
| ACTTCTTTATCTGAGGACTC+AGG | - | chr2.1:33160307-33160326 | None:intergenic | 40.0% | |
| AGAAACTGTTGGTCATACTG+AGG | + | chr2.1:33162195-33162214 | MS.gene92241:CDS | 40.0% | |
| AGGGTGTAAGAAGAGAAGTA+GGG | + | chr2.1:33161867-33161886 | MS.gene92241:intron | 40.0% | |
| AGTGAGGGAAATTGAGAAGA+AGG | - | chr2.1:33158372-33158391 | None:intergenic | 40.0% | |
| ATCAAGGCTCTTATTCAAGC+TGG | + | chr2.1:33159209-33159228 | MS.gene92241:CDS | 40.0% | |
| ATGTTGACGACCCTAACTAA+TGG | + | chr2.1:33160217-33160236 | MS.gene92241:intron | 40.0% | |
| ATTGTTTCAGGCTGCTCAAT+AGG | - | chr2.1:33160470-33160489 | None:intergenic | 40.0% | |
| CACAACTGCAAGACCAAAAA+TGG | - | chr2.1:33159549-33159568 | None:intergenic | 40.0% | |
| CAGGCCATCTTTACATCATT+TGG | - | chr2.1:33160288-33160307 | None:intergenic | 40.0% | |
| CATAATAAGGCAAAGTGACG+AGG | + | chr2.1:33162096-33162115 | MS.gene92241:CDS | 40.0% | |
| CCAAGAAAATTCCCCAATTC+GGG | + | chr2.1:33161135-33161154 | MS.gene92241:intron | 40.0% | |
| CTCAAAGACGTGTTTCAAGA+TGG | + | chr2.1:33158813-33158832 | MS.gene92241:intron | 40.0% | |
| CTCTTTGCCATACAGAAACA+CGG | - | chr2.1:33159183-33159202 | None:intergenic | 40.0% | |
| CTGGAGTTTCAATGGCAATT+GGG | + | chr2.1:33159135-33159154 | MS.gene92241:CDS | 40.0% | |
| GATACGCTCAAAATGGCTTA+TGG | - | chr2.1:33160896-33160915 | None:intergenic | 40.0% | |
| GCACATCAAAAGACTGATAC+GGG | - | chr2.1:33159651-33159670 | None:intergenic | 40.0% | |
| GGAATCCTAGCATAGTCAAA+AGG | - | chr2.1:33159674-33159693 | None:intergenic | 40.0% | |
| GGCACATCAAAAGACTGATA+CGG | - | chr2.1:33159652-33159671 | None:intergenic | 40.0% | |
| GGTGCCAAATGATGTAAAGA+TGG | + | chr2.1:33160281-33160300 | MS.gene92241:intron | 40.0% | |
| GTACATGGTTGACATCCATT+TGG | - | chr2.1:33161925-33161944 | None:intergenic | 40.0% | |
| GTCAGAGTGAGGATAATTAC+AGG | - | chr2.1:33160688-33160707 | None:intergenic | 40.0% | |
| GTCATATCCTGTATACGTAG+AGG | + | chr2.1:33160516-33160535 | MS.gene92241:intron | 40.0% | |
| GTCTTCATTGTAAGCCAAAC+AGG | - | chr2.1:33161830-33161849 | None:intergenic | 40.0% | |
| GTGGGAAAGAAATGGTTGTA+CGG | + | chr2.1:33160153-33160172 | MS.gene92241:intron | 40.0% | |
| GTGTGTTGTGCTCATCTAAT+TGG | - | chr2.1:33158637-33158656 | None:intergenic | 40.0% | |
| GTTCCAAAGAAGTGGTTTCT+TGG | - | chr2.1:33162036-33162055 | None:intergenic | 40.0% | |
| GTTCCAAGAAACCACTTCTT+TGG | + | chr2.1:33162030-33162049 | MS.gene92241:CDS | 40.0% | |
| TAGAATCGTGAGTATGATGG+TGG | + | chr2.1:33160999-33161018 | MS.gene92241:intron | 40.0% | |
| TCATATCCTACGAAGAAGCA+CGG | - | chr2.1:33158781-33158800 | None:intergenic | 40.0% | |
| TTGTTGTGGTTCCAAAGAAG+TGG | - | chr2.1:33162044-33162063 | None:intergenic | 40.0% | |
| ! | CATACAGAAGAGTGTGAAGA+AGG | - | chr2.1:33159242-33159261 | None:intergenic | 40.0% |
| ! | GACAATGTTTTGTCAGAGTG+AGG | - | chr2.1:33160699-33160718 | None:intergenic | 40.0% |
| ! | GACTGATTTCTGTGATTTGC+AGG | + | chr2.1:33161847-33161866 | MS.gene92241:intron | 40.0% |
| ! | TCTTCTGTTACTTGTGCTGT+GGG | + | chr2.1:33161373-33161392 | MS.gene92241:intron | 40.0% |
| ! | TTCTTCTGTTACTTGTGCTG+TGG | + | chr2.1:33161372-33161391 | MS.gene92241:intron | 40.0% |
| ! | TTCTTTTGGATAGGCAACAG+TGG | + | chr2.1:33159358-33159377 | MS.gene92241:intron | 40.0% |
| ! | TTTTGCGGAAAACCCGAATT+GGG | - | chr2.1:33161150-33161169 | None:intergenic | 40.0% |
| ! | TTTTTGCGGAAAACCCGAAT+TGG | - | chr2.1:33161151-33161170 | None:intergenic | 40.0% |
| !! | AGTTTCTGCTTTTGGTGGAT+TGG | - | chr2.1:33161993-33162012 | None:intergenic | 40.0% |
| !! | TCTTGAGTTTCTGCTTTTGG+TGG | - | chr2.1:33161998-33162017 | None:intergenic | 40.0% |
| !!! | GGCTACTTTTACACACTATC+GGG | + | chr2.1:33158862-33158881 | MS.gene92241:intron | 40.0% |
| AAACAGAGAAACACGCTCAG+TGG | - | chr2.1:33161299-33161318 | None:intergenic | 45.0% | |
| AAGAACTAGCACAGCAACAG+TGG | - | chr2.1:33161357-33161376 | None:intergenic | 45.0% | |
| AAGGCTCTTATTCAAGCTGG+AGG | + | chr2.1:33159212-33159231 | MS.gene92241:CDS | 45.0% | |
| ACCATCAGCAACCAACTTTG+AGG | - | chr2.1:33162161-33162180 | None:intergenic | 45.0% | |
| AGGCTCTTATTCAAGCTGGA+GGG | + | chr2.1:33159213-33159232 | MS.gene92241:CDS | 45.0% | |
| ATTTCTTCTCTTGCTGCTGC+TGG | + | chr2.1:33158471-33158490 | MS.gene92241:CDS | 45.0% | |
| CAGGGTGTAAGAAGAGAAGT+AGG | + | chr2.1:33161866-33161885 | MS.gene92241:intron | 45.0% | |
| GACCAAAAATGGGATCTGAC+AGG | - | chr2.1:33159538-33159557 | None:intergenic | 45.0% | |
| GATTGCAGCTGGAGTTTCAA+TGG | + | chr2.1:33159127-33159146 | MS.gene92241:CDS | 45.0% | |
| GCTGGAGTTTCAATGGCAAT+TGG | + | chr2.1:33159134-33159153 | MS.gene92241:CDS | 45.0% | |
| GGTCTGATAAACTCTCAACC+TGG | + | chr2.1:33161962-33161981 | MS.gene92241:CDS | 45.0% | |
| GGTTGCAAGTGGGAAAGAAA+TGG | + | chr2.1:33160145-33160164 | MS.gene92241:intron | 45.0% | |
| TATCGGGTCACTCATGTTAC+AGG | + | chr2.1:33158878-33158897 | MS.gene92241:intron | 45.0% | |
| TGGTCATACTGAGGTTGAAG+TGG | + | chr2.1:33162204-33162223 | MS.gene92241:CDS | 45.0% | |
| TTTGCGGAAAACCCGAATTG+GGG | - | chr2.1:33161149-33161168 | None:intergenic | 45.0% | |
| ! | ACCTCAAAGTTGGTTGCTGA+TGG | + | chr2.1:33162157-33162176 | MS.gene92241:CDS | 45.0% |
| ! | ACGTCTTTGATCAGAGGTGT+CGG | - | chr2.1:33158659-33158678 | None:intergenic | 45.0% |
| ! | ATGTCACTTAGGGTTGCAAG+TGG | + | chr2.1:33160134-33160153 | MS.gene92241:intron | 45.0% |
| ! | CCCGAATTGGGGAATTTTCT+TGG | - | chr2.1:33161138-33161157 | None:intergenic | 45.0% |
| ! | GTGGCTTGTGCAACATTACT+TGG | + | chr2.1:33159377-33159396 | MS.gene92241:CDS | 45.0% |
| ! | TGTCACTTAGGGTTGCAAGT+GGG | + | chr2.1:33160135-33160154 | MS.gene92241:intron | 45.0% |
| !! | CAACATTACTTGGCCTTGAG+AGG | + | chr2.1:33159387-33159406 | MS.gene92241:CDS | 45.0% |
| !! | GATTGTTTTGTGGGCCTGTT+TGG | + | chr2.1:33161813-33161832 | MS.gene92241:intron | 45.0% |
| !! | TGTGCCCTTTTGACTATGCT+AGG | + | chr2.1:33159666-33159685 | MS.gene92241:intron | 45.0% |
| !! | TTTGGTGGATTGGATGATCC+AGG | - | chr2.1:33161983-33162002 | None:intergenic | 45.0% |
| !!! | ACTTGGATTTTTGGTTGGGC+TGG | + | chr2.1:33162240-33162259 | MS.gene92241:CDS | 45.0% |
| !! | ACAATAATATTATTAAAATT+TGG | - | chr2.1:33159041-33159060 | None:intergenic | 5.0% |
| !!! | TTCTTTTTAATTTTAAAAAT+GGG | - | chr2.1:33161226-33161245 | None:intergenic | 5.0% |
| !!! | TTTCTTTTTAATTTTAAAAA+TGG | - | chr2.1:33161227-33161246 | None:intergenic | 5.0% |
| !!! | TTTTAAAATTAAAAAGAAAA+TGG | + | chr2.1:33161228-33161247 | MS.gene92241:intron | 5.0% |
| ACAGGCCTGATGTTTAGTCG+TGG | + | chr2.1:33158896-33158915 | MS.gene92241:intron | 50.0% | |
| ACTGAGGTTGAAGTGGTAGC+TGG | + | chr2.1:33162211-33162230 | MS.gene92241:CDS | 50.0% | |
| AGCGTGTTGAGAGTCCACAT+TGG | + | chr2.1:33158927-33158946 | MS.gene92241:intron | 50.0% | |
| ATCGAGAGTCTGCGCAAGAT+TGG | - | chr2.1:33161651-33161670 | None:intergenic | 50.0% | |
| ATGGCCACGTCTTTGATCAG+AGG | - | chr2.1:33158665-33158684 | None:intergenic | 50.0% | |
| ATGTGTCCGTGCTTCTTCGT+AGG | + | chr2.1:33158772-33158791 | MS.gene92241:intron | 50.0% | |
| CAGGCCTGATGTTTAGTCGT+GGG | + | chr2.1:33158897-33158916 | MS.gene92241:intron | 50.0% | |
| CCAGATGCAGATCTATCTGC+AGG | - | chr2.1:33160364-33160383 | None:intergenic | 50.0% | |
| CCTGCAGATAGATCTGCATC+TGG | + | chr2.1:33160361-33160380 | MS.gene92241:intron | 50.0% | |
| CTTGGGATCGGTTGAATCAG+TGG | + | chr2.1:33161083-33161102 | MS.gene92241:intron | 50.0% | |
| GACACCTCTGATCAAAGACG+TGG | + | chr2.1:33158658-33158677 | MS.gene92241:intron | 50.0% | |
| GGTCTTGCAGTTGTGTATGC+TGG | + | chr2.1:33159554-33159573 | MS.gene92241:CDS | 50.0% | |
| GTGGTAGCTGGTGGTTTACT+TGG | + | chr2.1:33162223-33162242 | MS.gene92241:CDS | 50.0% | |
| TCGAGAGTCTGCGCAAGATT+GGG | - | chr2.1:33161650-33161669 | None:intergenic | 50.0% | |
| TCTGTGCTGCAGTACCGTTA+AGG | + | chr2.1:33161053-33161072 | MS.gene92241:intron | 50.0% | |
| ! | GCTTAGGTTCTGATTGCAGC+TGG | + | chr2.1:33159116-33159135 | MS.gene92241:intron | 50.0% |
| ! | GGCCTGTCAGATCCCATTTT+TGG | + | chr2.1:33159533-33159552 | MS.gene92241:CDS | 50.0% |
| AGTCTGCGCAAGATTGGGAG+TGG | - | chr2.1:33161645-33161664 | None:intergenic | 55.0% | |
| CACGCCCACGACTAAACATC+AGG | - | chr2.1:33158904-33158923 | None:intergenic | 55.0% | |
| CCTCGGTGAAACACTCTCAG+TGG | - | chr2.1:33161332-33161351 | None:intergenic | 55.0% | |
| GAGGTTGAAGTGGTAGCTGG+TGG | + | chr2.1:33162214-33162233 | MS.gene92241:CDS | 55.0% | |
| GGATCGGTTGAATCAGTGGC+AGG | + | chr2.1:33161087-33161106 | MS.gene92241:intron | 55.0% | |
| !! | CCACTGAGAGTGTTTCACCG+AGG | + | chr2.1:33161329-33161348 | MS.gene92241:intron | 55.0% |
| GCACAGCAACAGTGGCGCCT+CGG | - | chr2.1:33161349-33161368 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 33158333 | 33162282 | 33158333 | ID=MS.gene92241 |
| chr2.1 | mRNA | 33158333 | 33162282 | 33158333 | ID=MS.gene92241.t1;Parent=MS.gene92241 |
| chr2.1 | exon | 33158333 | 33158530 | 33158333 | ID=MS.gene92241.t1.exon1;Parent=MS.gene92241.t1 |
| chr2.1 | CDS | 33158333 | 33158530 | 33158333 | ID=cds.MS.gene92241.t1;Parent=MS.gene92241.t1 |
| chr2.1 | exon | 33159122 | 33159256 | 33159122 | ID=MS.gene92241.t1.exon2;Parent=MS.gene92241.t1 |
| chr2.1 | CDS | 33159122 | 33159256 | 33159122 | ID=cds.MS.gene92241.t1;Parent=MS.gene92241.t1 |
| chr2.1 | exon | 33159371 | 33159408 | 33159371 | ID=MS.gene92241.t1.exon3;Parent=MS.gene92241.t1 |
| chr2.1 | CDS | 33159371 | 33159408 | 33159371 | ID=cds.MS.gene92241.t1;Parent=MS.gene92241.t1 |
| chr2.1 | exon | 33159532 | 33159598 | 33159532 | ID=MS.gene92241.t1.exon4;Parent=MS.gene92241.t1 |
| chr2.1 | CDS | 33159532 | 33159598 | 33159532 | ID=cds.MS.gene92241.t1;Parent=MS.gene92241.t1 |
| chr2.1 | exon | 33161869 | 33162282 | 33161869 | ID=MS.gene92241.t1.exon5;Parent=MS.gene92241.t1 |
| chr2.1 | CDS | 33161869 | 33162282 | 33161869 | ID=cds.MS.gene92241.t1;Parent=MS.gene92241.t1 |
| Gene Sequence |
| Protein sequence |
