AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049170.t1 MTR_3g098530 95.956 272 10 1 1 271 1 272 0.0 530
MS.gene049170.t1 MTR_8g096180 75.000 232 58 0 40 271 21 252 3.13e-134 379
MS.gene049170.t1 MTR_8g096170 73.593 231 61 0 40 270 24 254 7.25e-131 371
MS.gene049170.t1 MTR_8g096180 71.901 242 58 1 40 271 21 262 9.82e-131 371
MS.gene049170.t1 MTR_1g032580 37.975 237 138 4 39 270 5 237 1.24e-54 177
MS.gene049170.t1 MTR_1g032580 38.421 190 111 3 86 270 1 189 9.10e-46 152
MS.gene049170.t1 MTR_1g022185 31.224 237 152 6 34 262 7 240 1.58e-29 113
MS.gene049170.t1 MTR_4g105450 35.220 159 101 2 65 222 68 225 4.51e-26 103
MS.gene049170.t1 MTR_4g105460 33.129 163 107 2 65 226 70 231 9.63e-25 99.8
MS.gene049170.t1 MTR_7g087500 28.986 207 131 5 64 262 42 240 2.60e-23 97.4
MS.gene049170.t1 MTR_3g097350 30.476 210 132 4 66 261 247 456 3.21e-22 96.3
MS.gene049170.t1 MTR_3g117090 32.794 247 145 9 35 261 62 307 6.05e-22 95.1
MS.gene049170.t1 MTR_3g117090 32.389 247 146 8 35 261 62 307 6.58e-22 95.1
MS.gene049170.t1 MTR_4g070720 33.333 219 127 7 61 261 89 306 1.58e-21 94.0
MS.gene049170.t1 MTR_3g112150 31.797 217 129 6 68 266 93 308 1.74e-21 94.0
MS.gene049170.t1 MTR_1g022480 29.856 278 173 11 10 266 51 327 7.52e-21 92.0
MS.gene049170.t1 MTR_1g022480 29.856 278 173 11 10 266 51 327 7.63e-21 92.0
MS.gene049170.t1 MTR_1g022480 29.856 278 173 11 10 266 51 327 7.92e-21 92.0
MS.gene049170.t1 MTR_1g104540 27.778 198 137 3 43 235 12 208 4.58e-20 89.4
MS.gene049170.t1 MTR_1g022480 32.558 215 126 8 70 266 30 243 5.53e-20 89.7
MS.gene049170.t1 MTR_3g074050 28.139 231 148 8 40 261 22 243 7.06e-20 87.8
MS.gene049170.t1 MTR_5g062310 28.000 175 122 3 64 237 44 215 7.51e-20 87.8
MS.gene049170.t1 MTR_7g056587 29.804 255 150 10 28 261 64 310 8.67e-20 89.0
MS.gene049170.t1 MTR_5g021050 31.535 241 143 8 43 263 50 288 8.73e-20 89.0
MS.gene049170.t1 MTR_7g056587 29.804 255 150 10 28 261 72 318 8.98e-20 89.0
MS.gene049170.t1 MTR_7g056587 29.804 255 150 10 28 261 72 318 9.38e-20 89.0
MS.gene049170.t1 MTR_5g021050 31.535 241 143 8 43 263 50 288 9.57e-20 88.6
MS.gene049170.t1 MTR_7g056587 29.804 255 150 10 28 261 86 332 1.03e-19 89.0
MS.gene049170.t1 MTR_3g074050 27.706 231 150 8 40 261 22 244 1.81e-19 86.7
MS.gene049170.t1 MTR_2g031610 29.524 210 132 6 66 261 142 349 2.66e-19 87.4
MS.gene049170.t1 MTR_8g095360 28.814 295 169 11 3 261 97 386 4.56e-19 86.7
MS.gene049170.t1 MTR_3g117100 32.093 215 127 7 65 261 107 320 5.50e-19 86.7
MS.gene049170.t1 MTR_8g077700 28.846 208 141 6 62 265 39 243 5.85e-19 84.7
MS.gene049170.t1 MTR_4g033435 29.911 224 120 7 63 261 266 477 6.31e-19 86.7
MS.gene049170.t1 MTR_8g076880 31.507 219 129 7 62 261 73 289 6.41e-19 86.7
MS.gene049170.t1 MTR_4g070810 31.513 238 143 8 43 261 81 317 8.28e-19 86.3
MS.gene049170.t1 MTR_8g077700 28.846 208 141 6 62 265 67 271 2.24e-18 83.6
MS.gene049170.t1 MTR_7g070480 27.830 212 138 5 63 261 95 304 7.49e-18 83.2
MS.gene049170.t1 MTR_4g013300 28.372 215 128 7 66 261 123 330 9.87e-18 82.8
MS.gene049170.t1 MTR_5g012460 29.515 227 127 5 62 263 109 327 1.19e-17 82.4
MS.gene049170.t1 MTR_4g105460 35.036 137 86 3 65 200 70 204 7.47e-17 77.4
MS.gene049170.t1 MTR_3g010190 29.555 247 153 8 36 263 71 315 7.64e-17 80.5
MS.gene049170.t1 MTR_8g071000 29.779 272 166 12 10 261 35 301 1.19e-16 79.7
MS.gene049170.t1 MTR_4g033435 28.079 203 123 6 63 247 266 463 8.90e-16 77.0
MS.gene049170.t1 MTR_4g070790 28.311 219 136 6 62 261 78 294 3.67e-14 72.0
MS.gene049170.t1 MTR_7g056587 29.744 195 116 6 86 261 1 193 7.12e-14 71.6
MS.gene049170.t1 MTR_5g062310 25.490 153 110 3 86 237 1 150 1.44e-13 69.3
MS.gene049170.t1 MTR_1g069915 28.507 221 129 9 61 261 142 353 1.92e-13 70.1
MS.gene049170.t1 MTR_3g074050 27.027 185 119 7 86 262 1 177 4.45e-13 67.8
MS.gene049170.t1 MTR_6g015645 32.484 157 90 6 120 261 27 182 4.73e-12 65.9
MS.gene049170.t1 MTR_3g060670 25.822 213 124 7 68 257 33 234 1.34e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049170.t1 AT1G01630 65.368 231 80 0 41 271 25 255 1.45e-117 337
MS.gene049170.t1 AT1G14820 38.333 240 139 4 36 270 1 236 2.29e-49 164
MS.gene049170.t1 AT1G14820 39.815 216 124 3 60 270 9 223 4.46e-47 157
MS.gene049170.t1 AT1G14820 39.815 216 124 3 60 270 9 223 4.46e-47 157
MS.gene049170.t1 AT4G08690 30.531 226 150 5 40 261 16 238 5.91e-29 112
MS.gene049170.t1 AT4G08690 30.531 226 150 5 40 261 16 238 5.91e-29 112
MS.gene049170.t1 AT4G08690 30.531 226 150 5 40 261 16 238 5.91e-29 112
MS.gene049170.t1 AT1G75170 30.864 243 148 8 31 265 14 244 1.06e-26 105
MS.gene049170.t1 AT1G75170 30.864 243 148 8 31 265 14 244 1.06e-26 105
MS.gene049170.t1 AT1G22180 30.531 226 150 6 41 262 20 242 4.91e-24 99.0
MS.gene049170.t1 AT1G22180 30.531 226 150 6 41 262 20 242 4.91e-24 99.0
MS.gene049170.t1 AT4G36640 29.612 206 138 5 64 265 39 241 1.26e-23 97.4
MS.gene049170.t1 AT4G36640 29.612 206 138 5 64 265 39 241 1.26e-23 97.4
MS.gene049170.t1 AT5G63060 33.742 163 106 2 65 226 36 197 6.31e-23 94.4
MS.gene049170.t1 AT5G63060 33.742 163 106 2 65 226 71 232 1.06e-22 94.4
MS.gene049170.t1 AT4G34580 33.180 217 125 8 64 261 83 298 7.25e-22 95.1
MS.gene049170.t1 AT4G34580 33.180 217 125 8 64 261 83 298 7.25e-22 95.1
MS.gene049170.t1 AT4G39180 31.696 224 134 7 61 266 89 311 5.61e-21 92.4
MS.gene049170.t1 AT4G39180 31.696 224 134 7 61 266 89 311 5.82e-21 92.4
MS.gene049170.t1 AT4G39180 31.696 224 134 7 61 266 89 311 5.82e-21 92.4
MS.gene049170.t1 AT4G36490 31.050 219 130 7 62 261 72 288 1.36e-20 91.3
MS.gene049170.t1 AT1G30690 30.769 208 133 6 63 261 217 422 2.03e-20 90.9
MS.gene049170.t1 AT1G30690 30.769 208 133 6 63 261 217 422 2.03e-20 90.9
MS.gene049170.t1 AT2G16380 34.259 216 122 8 65 261 84 298 2.95e-20 90.5
MS.gene049170.t1 AT2G16380 34.259 216 122 8 65 261 84 298 2.95e-20 90.5
MS.gene049170.t1 AT4G09160 27.626 257 157 8 31 261 268 521 4.62e-20 90.1
MS.gene049170.t1 AT2G18180 31.222 221 131 7 62 263 75 293 4.63e-20 89.7
MS.gene049170.t1 AT4G09160 27.626 257 157 8 31 261 268 521 4.67e-20 90.1
MS.gene049170.t1 AT4G39170 31.250 272 165 9 10 261 49 318 5.10e-20 89.7
MS.gene049170.t1 AT4G09160 27.626 257 157 8 31 261 293 546 5.26e-20 89.7
MS.gene049170.t1 AT4G39170 31.250 272 165 9 10 261 49 318 5.78e-20 89.7
MS.gene049170.t1 AT2G18180 31.222 221 131 7 62 263 75 293 5.87e-20 89.7
MS.gene049170.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.14e-19 88.6
MS.gene049170.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.14e-19 88.6
MS.gene049170.t1 AT2G21520 32.870 216 124 7 65 261 111 324 1.15e-19 89.0
MS.gene049170.t1 AT2G21520 32.870 216 124 7 65 261 111 324 1.15e-19 89.0
MS.gene049170.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.25e-19 88.6
MS.gene049170.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.25e-19 88.6
MS.gene049170.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.25e-19 88.6
MS.gene049170.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.25e-19 88.6
MS.gene049170.t1 AT2G21520 32.870 216 124 7 65 261 107 320 1.28e-19 88.6
MS.gene049170.t1 AT2G18180 31.132 212 125 7 71 263 13 222 2.81e-19 87.4
MS.gene049170.t1 AT2G18180 31.132 212 125 7 71 263 13 222 3.70e-19 87.0
MS.gene049170.t1 AT1G05370 30.899 178 122 1 62 239 38 214 8.24e-19 85.9
MS.gene049170.t1 AT1G19650 31.513 238 143 7 43 261 78 314 8.78e-19 86.3
MS.gene049170.t1 AT1G19650 31.933 238 142 7 43 261 78 314 9.96e-19 85.5
MS.gene049170.t1 AT1G19650 30.932 236 142 7 44 261 10 242 1.39e-18 85.5
MS.gene049170.t1 AT1G75370 32.218 239 140 8 43 261 87 323 4.20e-18 84.3
MS.gene049170.t1 AT1G75370 32.218 239 140 8 43 261 87 323 6.42e-18 83.6
MS.gene049170.t1 AT5G47510 30.455 220 134 6 62 263 45 263 4.19e-17 80.5
MS.gene049170.t1 AT5G47510 30.455 220 134 6 62 263 44 262 4.49e-17 80.5
MS.gene049170.t1 AT5G47510 30.455 220 134 6 62 263 45 263 5.03e-17 80.1
MS.gene049170.t1 AT1G55690 31.905 210 123 9 71 261 104 312 5.87e-17 80.9
MS.gene049170.t1 AT1G55690 31.905 210 123 9 71 261 104 312 7.24e-17 80.5
MS.gene049170.t1 AT1G55690 31.905 210 123 9 71 261 104 312 7.24e-17 80.5
MS.gene049170.t1 AT1G55690 31.905 210 123 9 71 261 104 312 7.24e-17 80.5
MS.gene049170.t1 AT1G55690 31.905 210 123 9 71 261 104 312 7.24e-17 80.5
MS.gene049170.t1 AT1G22180 28.333 180 123 5 86 262 1 177 1.64e-16 77.4
MS.gene049170.t1 AT1G22180 28.333 180 123 5 86 262 1 177 1.64e-16 77.4
MS.gene049170.t1 AT1G75170 33.117 154 91 5 116 262 10 158 3.54e-16 75.9
MS.gene049170.t1 AT3G24840 28.916 249 143 10 41 263 75 315 4.23e-16 78.2
MS.gene049170.t1 AT3G24840 28.916 249 143 10 41 263 75 315 4.23e-16 78.2
MS.gene049170.t1 AT3G24840 28.916 249 143 10 41 263 75 315 4.23e-16 78.2
MS.gene049170.t1 AT3G24840 28.916 249 143 10 41 263 75 315 4.31e-16 78.2
MS.gene049170.t1 AT3G24840 28.916 249 143 10 41 263 75 315 4.31e-16 78.2
MS.gene049170.t1 AT3G24840 28.916 249 143 10 41 263 75 315 4.31e-16 78.2
MS.gene049170.t1 AT3G24840 28.916 249 143 10 41 263 75 315 4.31e-16 78.2
MS.gene049170.t1 AT1G72160 28.571 210 134 7 66 261 164 371 5.06e-16 77.8
MS.gene049170.t1 AT4G36640 27.174 184 127 5 86 265 1 181 6.41e-16 75.5
MS.gene049170.t1 AT3G22410 29.412 170 116 4 68 235 33 200 1.01e-15 76.6
MS.gene049170.t1 AT3G51670 27.273 209 137 5 66 261 82 288 1.24e-15 76.6
MS.gene049170.t1 AT2G18180 29.949 197 117 7 86 263 1 195 7.14e-14 71.6
MS.gene049170.t1 AT2G16380 31.443 194 114 7 86 261 1 193 2.57e-13 69.7
MS.gene049170.t1 AT1G55840 26.556 241 132 9 50 257 12 240 3.16e-12 66.2
MS.gene049170.t1 AT5G47730 27.586 203 128 7 71 257 41 240 4.46e-12 65.9
MS.gene049170.t1 AT5G47730 27.586 203 128 7 71 257 41 240 4.46e-12 65.9
MS.gene049170.t1 AT1G55840 27.143 210 120 7 71 257 14 213 5.65e-12 65.1
MS.gene049170.t1 AT1G72150 26.484 219 132 10 63 261 253 462 2.03e-11 64.3

Find 58 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATCTATTGCAGACATTA+AGG 0.206776 3.3:+81028759 MS.gene049170:CDS
AGTTCTCATGAGGCTGATTT+TGG 0.214151 3.3:-81026948 None:intergenic
GCAGCAAAAGCAACAGTTAT+AGG 0.238428 3.3:-81027588 None:intergenic
TAAAAGTGTTACCTTCTTCT+TGG 0.260617 3.3:-81028941 None:intergenic
CTTACATGTTTATGAAAGTA+TGG 0.278705 3.3:+81028887 MS.gene049170:CDS
TTCTCCATTTCATGTACTTT+AGG 0.284773 3.3:-81027467 None:intergenic
GAATCCAATGCTGAATTTCC+AGG 0.307712 3.3:-81026836 None:intergenic
GAATCTTGTATTGGAACTAA+TGG 0.319714 3.3:-81029146 None:intergenic
ATTGGATTCAAAACATGAAT+TGG 0.341875 3.3:+81026850 MS.gene049170:CDS
AAGCCGCGACCCTTCTTCTA+AGG 0.343766 3.3:+81026979 MS.gene049170:CDS
AGTCAGCTCCCAGAGATATA+TGG 0.360943 3.3:+81029113 MS.gene049170:CDS
ATTAATCAAGAATCTTGTAT+TGG 0.399694 3.3:-81029155 None:intergenic
CATACTTTCATAAACATGTA+AGG 0.403022 3.3:-81028886 None:intergenic
AAAATTCTTGTTCAAGATGA+TGG 0.403189 3.3:+81026893 MS.gene049170:CDS
TGTTCCTAAAGTACATGAAA+TGG 0.412855 3.3:+81027463 MS.gene049170:CDS
AACAACTTTCCCAGTCTCTC+TGG 0.415107 3.3:-81028850 None:intergenic
GTATCTATTGCAGACATTAA+GGG 0.415933 3.3:+81028760 MS.gene049170:CDS
AGTTTGCCTCCATATATCTC+TGG 0.418208 3.3:-81029122 None:intergenic
AATGCTGAATTTCCAGGCTC+AGG 0.419917 3.3:-81026830 None:intergenic
TCAAGATGATGGAGCTTTGA+AGG 0.435484 3.3:+81026904 MS.gene049170:CDS
CAAGAAAAGATGTATGTTCA+AGG 0.455113 3.3:+81027546 MS.gene049170:CDS
TATTGCAGACATTAAGGGCT+GGG 0.457362 3.3:+81028765 MS.gene049170:CDS
AGATTACTATCCAGAGAGAC+TGG 0.459793 3.3:+81028840 MS.gene049170:CDS
TTGTTTGTTACCTTAGAAGA+AGG 0.464246 3.3:-81026989 None:intergenic
GAAACAGTGAGCCCTGAGCC+TGG 0.469224 3.3:+81026818 MS.gene049170:CDS
TGGTATTGTCATCAATGAAA+GGG 0.492868 3.3:-81028921 None:intergenic
TTGGTATTGTCATCAATGAA+AGG 0.500676 3.3:-81028922 None:intergenic
CTATTGCAGACATTAAGGGC+TGG 0.521375 3.3:+81028764 MS.gene049170:CDS
TCGTGATTTAGATGTAGATA+AGG 0.528241 3.3:+81027431 MS.gene049170:CDS
TGTTCAAGGAGTGGATAAGA+AGG 0.530265 3.3:+81027560 MS.gene049170:CDS
TGGATAGTAATCTTGTAGAA+TGG 0.535897 3.3:-81028830 None:intergenic
ATGCTGAATTTCCAGGCTCA+GGG 0.541275 3.3:-81026829 None:intergenic
TAATGTGACAGGATGCCACC+AGG 0.550381 3.3:+81028724 MS.gene049170:intron
TGTTTGTTACCTTAGAAGAA+GGG 0.551270 3.3:-81026988 None:intergenic
TGATGACAATACCAAGAAGA+AGG 0.551378 3.3:+81028930 MS.gene049170:CDS
TATGCAAACAGCGACATTCG+CGG 0.552322 3.3:+81028790 MS.gene049170:CDS
AGATCGTCAGGTATCTCTGA+AGG 0.558116 3.3:-81027519 None:intergenic
AGCGACATTCGCGGTTACCT+CGG 0.560343 3.3:+81028799 MS.gene049170:CDS
TGAGCCTGGAAATTCAGCAT+TGG 0.570238 3.3:+81026832 MS.gene049170:CDS
GTTTGCCTCCATATATCTCT+GGG 0.573143 3.3:-81029121 None:intergenic
AGAAAATCATTTGTTCCAAG+TGG 0.582982 3.3:+81027486 MS.gene049170:CDS
AAAGATGTATGTTCAAGGAG+TGG 0.599654 3.3:+81027551 MS.gene049170:CDS
TTACCTTAGAAGAAGGGTCG+CGG 0.603865 3.3:-81026982 None:intergenic
ATTGCAGACATTAAGGGCTG+GGG 0.606164 3.3:+81028766 MS.gene049170:CDS
GATCGTCAGGTATCTCTGAA+GGG 0.611116 3.3:-81027518 None:intergenic
TCATAAACATGTAAGGTGCA+TGG 0.614836 3.3:-81028879 None:intergenic
ATCGTCAGGTATCTCTGAAG+GGG 0.622595 3.3:-81027517 None:intergenic
GAAGGGGATACAGAACCACT+TGG 0.629494 3.3:-81027501 None:intergenic
TTTCAACAAGAGTTCTCATG+AGG 0.631501 3.3:-81026958 None:intergenic
AATGTGACAGGATGCCACCA+GGG 0.634560 3.3:+81028725 MS.gene049170:intron
GATTACTATCCAGAGAGACT+GGG 0.647177 3.3:+81028841 MS.gene049170:CDS
TTGGCTAAAGAAGAAACCAA+GGG 0.653928 3.3:+81026869 MS.gene049170:CDS
GTTCAAGGAGTGGATAAGAA+GGG 0.656937 3.3:+81027561 MS.gene049170:CDS
ATTGGCTAAAGAAGAAACCA+AGG 0.661306 3.3:+81026868 MS.gene049170:CDS
CAGCTCCCAGAGATATATGG+AGG 0.670836 3.3:+81029116 MS.gene049170:CDS
ATGTGACAGGATGCCACCAG+GGG 0.685775 3.3:+81028726 MS.gene049170:intron
TGGCTAAAGAAGAAACCAAG+GGG 0.720399 3.3:+81026870 MS.gene049170:CDS
GTAGAATGGTTAGAGCACCG+AGG 0.822792 3.3:-81028816 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATACAAAATTTATGA+TGG + chr3.3:81027282-81027301 MS.gene049170:intron 10.0%
!!! GTTATTTTTTTAATTCTAAA+AGG + chr3.3:81028109-81028128 MS.gene049170:intron 10.0%
!!! TTCTTTATAAAATTTGTTTT+AGG + chr3.3:81028133-81028152 MS.gene049170:intron 10.0%
!!! AAACATTTTCAAAACAAAAA+TGG + chr3.3:81027612-81027631 MS.gene049170:CDS 15.0%
!!! AAATTTATCTTTTTTTACAC+AGG - chr3.3:81028337-81028356 None:intergenic 15.0%
!!! ATAAATATTTTTTGTGTTAC+AGG + chr3.3:81028542-81028561 MS.gene049170:intron 15.0%
!!! TAAATATTTTTTGTGTTACA+GGG + chr3.3:81028543-81028562 MS.gene049170:intron 15.0%
!!! TTCTAAAAAAGTCAAATTTT+GGG - chr3.3:81027216-81027235 None:intergenic 15.0%
!!! TTTCTAAAAAAGTCAAATTT+TGG - chr3.3:81027217-81027236 None:intergenic 15.0%
!!! TTTTTTCGAACTAAATTTTT+TGG + chr3.3:81027252-81027271 MS.gene049170:intron 15.0%
!! ATGCATATACAGTTTATATT+TGG + chr3.3:81028654-81028673 MS.gene049170:intron 20.0%
!! CTTATGTCTAAATTAACAAA+AGG - chr3.3:81028486-81028505 None:intergenic 20.0%
!!! AACTAAATTGACTTATTTTG+AGG - chr3.3:81027946-81027965 None:intergenic 20.0%
!!! TTTTCAAAACAAAAATGGTT+TGG + chr3.3:81027617-81027636 MS.gene049170:CDS 20.0%
!!! TTTTGATAAAACAGTGATAA+CGG + chr3.3:81027053-81027072 MS.gene049170:intron 20.0%
! AAAATTCTTGTTCAAGATGA+TGG + chr3.3:81026893-81026912 MS.gene049170:CDS 25.0%
! AACTTTACAATTCTTCTTAC+TGG - chr3.3:81028690-81028709 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr3.3:81028274-81028293 None:intergenic 25.0%
! ATAGAACAAAACAAACATCA+TGG - chr3.3:81027308-81027327 None:intergenic 25.0%
! ATTGGATTCAAAACATGAAT+TGG + chr3.3:81026850-81026869 MS.gene049170:CDS 25.0%
! CATACTTTCATAAACATGTA+AGG - chr3.3:81028889-81028908 None:intergenic 25.0%
! CTAATATGTGAAGTTATGTT+TGG + chr3.3:81027721-81027740 MS.gene049170:intron 25.0%
! CTTACATGTTTATGAAAGTA+TGG + chr3.3:81028887-81028906 MS.gene049170:CDS 25.0%
! TCCATAAATTCTCCAAAATA+GGG + chr3.3:81027841-81027860 MS.gene049170:intron 25.0%
! TGCATGAATTAATTAATGAG+TGG - chr3.3:81028616-81028635 None:intergenic 25.0%
! TTCCATAAATTCTCCAAAAT+AGG + chr3.3:81027840-81027859 MS.gene049170:intron 25.0%
! TTTGAAAATTGAGATGTTCT+AGG + chr3.3:81029003-81029022 MS.gene049170:intron 25.0%
!! TATGTTGTTTATCCAAACAA+TGG + chr3.3:81028512-81028531 MS.gene049170:intron 25.0%
!!! AAAATTTGTTTTAGGCATCT+TGG + chr3.3:81028141-81028160 MS.gene049170:intron 25.0%
!!! ATTAATTTGTTTATCCCAAC+AGG + chr3.3:81028429-81028448 MS.gene049170:intron 25.0%
!!! ATTAGTTTGTTAACCATAAG+AGG - chr3.3:81027706-81027725 None:intergenic 25.0%
AAACTCATGTGAGACTATTT+GGG + chr3.3:81028219-81028238 MS.gene049170:intron 30.0%
AAATAAGTCAATCCAAACAC+TGG - chr3.3:81028181-81028200 None:intergenic 30.0%
AATAAGTCAATCCAAACACT+GGG - chr3.3:81028180-81028199 None:intergenic 30.0%
AGAAAATCATTTGTTCCAAG+TGG + chr3.3:81027486-81027505 MS.gene049170:CDS 30.0%
AGACCAAAAGGATATATATG+AGG - chr3.3:81028032-81028051 None:intergenic 30.0%
AGTGAAAAACAGATCCAAAT+CGG - chr3.3:81027175-81027194 None:intergenic 30.0%
CAAGAAAAGATGTATGTTCA+AGG + chr3.3:81027546-81027565 MS.gene049170:CDS 30.0%
GAATCTTGTATTGGAACTAA+TGG - chr3.3:81029149-81029168 None:intergenic 30.0%
GATTTGAACTTAAGACCAAA+AGG - chr3.3:81028044-81028063 None:intergenic 30.0%
GTATCTATTGCAGACATTAA+GGG + chr3.3:81028760-81028779 MS.gene049170:CDS 30.0%
GTTGTAGTTGCAAAAAAAAG+TGG - chr3.3:81027089-81027108 None:intergenic 30.0%
TAAACTCATGTGAGACTATT+TGG + chr3.3:81028218-81028237 MS.gene049170:intron 30.0%
TAGGTAGCAAATAGTTAGAT+TGG + chr3.3:81027346-81027365 MS.gene049170:intron 30.0%
TCGTGATTTAGATGTAGATA+AGG + chr3.3:81027431-81027450 MS.gene049170:CDS 30.0%
TGGATAGTAATCTTGTAGAA+TGG - chr3.3:81028833-81028852 None:intergenic 30.0%
TGGTATTGTCATCAATGAAA+GGG - chr3.3:81028924-81028943 None:intergenic 30.0%
TGTATCTATTGCAGACATTA+AGG + chr3.3:81028759-81028778 MS.gene049170:CDS 30.0%
TGTTCCTAAAGTACATGAAA+TGG + chr3.3:81027463-81027482 MS.gene049170:CDS 30.0%
TTCTCCATTTCATGTACTTT+AGG - chr3.3:81027470-81027489 None:intergenic 30.0%
TTGGTATTGTCATCAATGAA+AGG - chr3.3:81028925-81028944 None:intergenic 30.0%
! AGACCTCATATATATCCTTT+TGG + chr3.3:81028026-81028045 MS.gene049170:intron 30.0%
! GTTTTCATAAACTACCTGTT+GGG - chr3.3:81028446-81028465 None:intergenic 30.0%
! TGTTTGTTACCTTAGAAGAA+GGG - chr3.3:81026991-81027010 None:intergenic 30.0%
! TGTTTTCATAAACTACCTGT+TGG - chr3.3:81028447-81028466 None:intergenic 30.0%
! TTGTTTGTTACCTTAGAAGA+AGG - chr3.3:81026992-81027011 None:intergenic 30.0%
!! ACCCTATTTTGGAGAATTTA+TGG - chr3.3:81027845-81027864 None:intergenic 30.0%
!! ATTACTATGTTGTACCGATT+TGG + chr3.3:81027158-81027177 MS.gene049170:intron 30.0%
!! GTTCTATTACAGTACTGATT+AGG + chr3.3:81027321-81027340 MS.gene049170:intron 30.0%
!! TAAAAGTGTTACCTTCTTCT+TGG - chr3.3:81028944-81028963 None:intergenic 30.0%
!! TTGGTCTTAAGTTCAAATCT+TGG + chr3.3:81028045-81028064 MS.gene049170:intron 30.0%
AAAGATGTATGTTCAAGGAG+TGG + chr3.3:81027551-81027570 MS.gene049170:CDS 35.0%
ACAACTAATAGCATCTCAAG+TGG - chr3.3:81027669-81027688 None:intergenic 35.0%
AGACTATTTGGGAGAGTTTA+AGG + chr3.3:81028230-81028249 MS.gene049170:intron 35.0%
AGGTTTAAACTTCGGGATTT+AGG + chr3.3:81027907-81027926 MS.gene049170:intron 35.0%
ATTGGCTAAAGAAGAAACCA+AGG + chr3.3:81026868-81026887 MS.gene049170:CDS 35.0%
CAACTAATAGCATCTCAAGT+GGG - chr3.3:81027668-81027687 None:intergenic 35.0%
CAATGCTTGAAATCCTCTTA+TGG + chr3.3:81027690-81027709 MS.gene049170:intron 35.0%
GGAATTGAATTGAGCTTGAT+GGG + chr3.3:81027367-81027386 MS.gene049170:intron 35.0%
GGTTTAAACTTCGGGATTTA+GGG + chr3.3:81027908-81027927 MS.gene049170:intron 35.0%
TCATAAACATGTAAGGTGCA+TGG - chr3.3:81028882-81028901 None:intergenic 35.0%
TGATGACAATACCAAGAAGA+AGG + chr3.3:81028930-81028949 MS.gene049170:CDS 35.0%
TGGAATTGAATTGAGCTTGA+TGG + chr3.3:81027366-81027385 MS.gene049170:intron 35.0%
TTGGCTAAAGAAGAAACCAA+GGG + chr3.3:81026869-81026888 MS.gene049170:CDS 35.0%
TTTATCGTTGAGCCATTGTT+TGG - chr3.3:81028527-81028546 None:intergenic 35.0%
TTTCAACAAGAGTTCTCATG+AGG - chr3.3:81026961-81026980 None:intergenic 35.0%
! CTAATCTTGAACAAAGTGCT+AGG - chr3.3:81027123-81027142 None:intergenic 35.0%
! TTGAACAAGAATTTTCCCCT+TGG - chr3.3:81026888-81026907 None:intergenic 35.0%
!! TTACAGTACTGATTAGGCTT+AGG + chr3.3:81027327-81027346 MS.gene049170:intron 35.0%
AAAATAGGGTCTGTTTGGAC+AGG + chr3.3:81027855-81027874 MS.gene049170:intron 40.0%
AAATAGGGTCTGTTTGGACA+GGG + chr3.3:81027856-81027875 MS.gene049170:intron 40.0%
AAGTTTAAACCTTGCTTGGG+TGG - chr3.3:81027899-81027918 None:intergenic 40.0%
AGATTACTATCCAGAGAGAC+TGG + chr3.3:81028840-81028859 MS.gene049170:CDS 40.0%
AGCTTACCCAATAATGTGAC+AGG + chr3.3:81028713-81028732 MS.gene049170:intron 40.0%
AGTTTGCCTCCATATATCTC+TGG - chr3.3:81029125-81029144 None:intergenic 40.0%
CCAAGCAAGGTTTAAACTTC+GGG + chr3.3:81027900-81027919 MS.gene049170:intron 40.0%
CCCAAGCAAGGTTTAAACTT+CGG + chr3.3:81027899-81027918 MS.gene049170:intron 40.0%
CCGAAGTTTAAACCTTGCTT+GGG - chr3.3:81027902-81027921 None:intergenic 40.0%
GAATCCAATGCTGAATTTCC+AGG - chr3.3:81026839-81026858 None:intergenic 40.0%
GATTACTATCCAGAGAGACT+GGG + chr3.3:81028841-81028860 MS.gene049170:CDS 40.0%
GCAGCAAAAGCAACAGTTAT+AGG - chr3.3:81027591-81027610 None:intergenic 40.0%
GTTCAAGGAGTGGATAAGAA+GGG + chr3.3:81027561-81027580 MS.gene049170:CDS 40.0%
GTTTGCCTCCATATATCTCT+GGG - chr3.3:81029124-81029143 None:intergenic 40.0%
TATTGCAGACATTAAGGGCT+GGG + chr3.3:81028765-81028784 MS.gene049170:CDS 40.0%
TCTCCAAAATAGGGTCTGTT+TGG + chr3.3:81027850-81027869 MS.gene049170:intron 40.0%
TGGCATCCTGTCACATTATT+GGG - chr3.3:81028722-81028741 None:intergenic 40.0%
TGGCTAAAGAAGAAACCAAG+GGG + chr3.3:81026870-81026889 MS.gene049170:CDS 40.0%
TGTTCAAGGAGTGGATAAGA+AGG + chr3.3:81027560-81027579 MS.gene049170:CDS 40.0%
! GATACAAACTTTTCTTCCCC+TGG - chr3.3:81028745-81028764 None:intergenic 40.0%
! TGTCCAAACAGACCCTATTT+TGG - chr3.3:81027856-81027875 None:intergenic 40.0%
! TTTTCTTGTGCAAGATCGTC+AGG - chr3.3:81027534-81027553 None:intergenic 40.0%
!! AGTTCTCATGAGGCTGATTT+TGG - chr3.3:81026951-81026970 None:intergenic 40.0%
!! TCAAGATGATGGAGCTTTGA+AGG + chr3.3:81026904-81026923 MS.gene049170:CDS 40.0%
AACAACTTTCCCAGTCTCTC+TGG - chr3.3:81028853-81028872 None:intergenic 45.0%
AATGCTGAATTTCCAGGCTC+AGG - chr3.3:81026833-81026852 None:intergenic 45.0%
AGATCGTCAGGTATCTCTGA+AGG - chr3.3:81027522-81027541 None:intergenic 45.0%
AGTCAATCCAAACACTGGGT+CGG - chr3.3:81028176-81028195 None:intergenic 45.0%
AGTCAGCTCCCAGAGATATA+TGG + chr3.3:81029113-81029132 MS.gene049170:CDS 45.0%
ATGCTGAATTTCCAGGCTCA+GGG - chr3.3:81026832-81026851 None:intergenic 45.0%
ATTGCAGACATTAAGGGCTG+GGG + chr3.3:81028766-81028785 MS.gene049170:CDS 45.0%
CCCGAAGTTTAAACCTTGCT+TGG - chr3.3:81027903-81027922 None:intergenic 45.0%
CTATTGCAGACATTAAGGGC+TGG + chr3.3:81028764-81028783 MS.gene049170:CDS 45.0%
GATCGTCAGGTATCTCTGAA+GGG - chr3.3:81027521-81027540 None:intergenic 45.0%
GTGGCATCCTGTCACATTAT+TGG - chr3.3:81028723-81028742 None:intergenic 45.0%
TATGCAAACAGCGACATTCG+CGG + chr3.3:81028790-81028809 MS.gene049170:CDS 45.0%
TGAGCCTGGAAATTCAGCAT+TGG + chr3.3:81026832-81026851 MS.gene049170:CDS 45.0%
TTACCTTAGAAGAAGGGTCG+CGG - chr3.3:81026985-81027004 None:intergenic 45.0%
TTTAGGCATCTTGGCGTGTT+GGG + chr3.3:81028150-81028169 MS.gene049170:intron 45.0%
! ACAAACTTTTCTTCCCCTGG+TGG - chr3.3:81028742-81028761 None:intergenic 45.0%
! ATCGTCAGGTATCTCTGAAG+GGG - chr3.3:81027520-81027539 None:intergenic 45.0%
! TTGAATTGAGCTTGATGGGC+AGG + chr3.3:81027371-81027390 MS.gene049170:intron 45.0%
! TTTTAGGCATCTTGGCGTGT+TGG + chr3.3:81028149-81028168 MS.gene049170:intron 45.0%
AATGTGACAGGATGCCACCA+GGG + chr3.3:81028725-81028744 MS.gene049170:intron 50.0%
CAGCTCCCAGAGATATATGG+AGG + chr3.3:81029116-81029135 MS.gene049170:CDS 50.0%
GAAGGGGATACAGAACCACT+TGG - chr3.3:81027504-81027523 None:intergenic 50.0%
TAAACCTTGCTTGGGTGGCT+TGG - chr3.3:81027894-81027913 None:intergenic 50.0%
TAATGTGACAGGATGCCACC+AGG + chr3.3:81028724-81028743 MS.gene049170:intron 50.0%
! AATTGAGCTTGATGGGCAGG+AGG + chr3.3:81027374-81027393 MS.gene049170:intron 50.0%
!! GTAGAATGGTTAGAGCACCG+AGG - chr3.3:81028819-81028838 None:intergenic 50.0%
AAGCCGCGACCCTTCTTCTA+AGG + chr3.3:81026979-81026998 MS.gene049170:CDS 55.0%
AGCGACATTCGCGGTTACCT+CGG + chr3.3:81028799-81028818 MS.gene049170:CDS 55.0%
ATGTGACAGGATGCCACCAG+GGG + chr3.3:81028726-81028745 MS.gene049170:intron 55.0%
AGGGTCTGTTTGGACAGGGC+CGG + chr3.3:81027860-81027879 MS.gene049170:intron 60.0%
GAAACAGTGAGCCCTGAGCC+TGG + chr3.3:81026818-81026837 MS.gene049170:CDS 60.0%
TGTTGGGCCGACCCAGTGTT+TGG + chr3.3:81028166-81028185 MS.gene049170:intron 60.0%
AGGGCCAAGCCACCCAAGCA+AGG + chr3.3:81027887-81027906 MS.gene049170:intron 65.0%
TTTGGACAGGGCCGGCCCAA+GGG + chr3.3:81027868-81027887 MS.gene049170:intron 65.0%
! GCTTGGGTGGCTTGGCCCTT+GGG - chr3.3:81027886-81027905 None:intergenic 65.0%
! TGCTTGGGTGGCTTGGCCCT+TGG - chr3.3:81027887-81027906 None:intergenic 65.0%
GTTTGGACAGGGCCGGCCCA+AGG + chr3.3:81027867-81027886 MS.gene049170:intron 70.0%
! GGGTGGCTTGGCCCTTGGGC+CGG - chr3.3:81027882-81027901 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 81026815 81029172 81026815 ID=MS.gene049170
chr3.3 mRNA 81026815 81029172 81026815 ID=MS.gene049170.t1;Parent=MS.gene049170
chr3.3 exon 81026815 81027000 81026815 ID=MS.gene049170.t1.exon1;Parent=MS.gene049170.t1
chr3.3 CDS 81026815 81027000 81026815 ID=cds.MS.gene049170.t1;Parent=MS.gene049170.t1
chr3.3 exon 81027393 81027651 81027393 ID=MS.gene049170.t1.exon2;Parent=MS.gene049170.t1
chr3.3 CDS 81027393 81027651 81027393 ID=cds.MS.gene049170.t1;Parent=MS.gene049170.t1
chr3.3 exon 81028564 81028600 81028564 ID=MS.gene049170.t1.exon3;Parent=MS.gene049170.t1
chr3.3 CDS 81028564 81028600 81028564 ID=cds.MS.gene049170.t1;Parent=MS.gene049170.t1
chr3.3 exon 81028735 81028951 81028735 ID=MS.gene049170.t1.exon4;Parent=MS.gene049170.t1
chr3.3 CDS 81028735 81028951 81028735 ID=cds.MS.gene049170.t1;Parent=MS.gene049170.t1
chr3.3 exon 81029056 81029172 81029056 ID=MS.gene049170.t1.exon5;Parent=MS.gene049170.t1
chr3.3 CDS 81029056 81029172 81029056 ID=cds.MS.gene049170.t1;Parent=MS.gene049170.t1
Gene Sequence

>MS.gene049170

ATGGAAACAGTGAGCCCTGAGCCTGGAAATTCAGCATTGGATTCAAAACATGAATTGGCTAAAGAAGAAACCAAGGGGAAAATTCTTGTTCAAGATGATGGAGCTTTGAAGGATAGCACAGAAGCTGAACTCACCAAAATCAGCCTCATGAGAACTCTTGTTGAAAGCCGCGACCCTTCTTCTAAGGTAACAAACAAAGTTAACAAACATCATCATGACATGACATCATCGTATGTAGTTTTGATAAAACAGTGATAACGGTTAAACTTTGCCACTTTTTTTTGCAACTACAACTTGTGTCATATCCTAGCACTTTGTTCAAGATTAGTTTATTTTGTTGTCAATTACTATGTTGTACCGATTTGGATCTGTTTTTCACTCTGAAACAAGTTTAGTGTCCCAAAATTTGACTTTTTTAGAAAAATTATTTTGTTTTTTTTTTTCGAACTAAATTTTTTGGATTATGATAAAAATACAAAATTTATGATGGCCATGATGTTTGTTTTGTTCTATTACAGTACTGATTAGGCTTAGGTAGCAAATAGTTAGATTGGAATTGAATTGAGCTTGATGGGCAGGAGGTAGATGATTTAATGATTAGAAGATTCTTGAGAGCTCGTGATTTAGATGTAGATAAGGCTTCATCTATGTTCCTAAAGTACATGAAATGGAGAAAATCATTTGTTCCAAGTGGTTCTGTATCCCCTTCAGAGATACCTGACGATCTTGCACAAGAAAAGATGTATGTTCAAGGAGTGGATAAGAAGGGTCGACCTATAACTGTTGCTTTTGCTGCTAAACATTTTCAAAACAAAAATGGTTTGGATGCATTTAAACGTATGTTTTTTTTCCCACTTGAGATGCTATTAGTTGTACAATGCTTGAAATCCTCTTATGGTTAACAAACTAATATGTGAAGTTATGTTTGGATTGACTTATTTAACTTTATCTATGTAGTTGTGAGATCGTTTAAGAGAGTTTATAAAAACAACTTATGACATGTTTATAAGTTATTTTGAGTTTATTTCCATAAATTCTCCAAAATAGGGTCTGTTTGGACAGGGCCGGCCCAAGGGCCAAGCCACCCAAGCAAGGTTTAAACTTCGGGATTTAGGGTTAAAAAAAAAGCCTCAAAATAAGTCAATTTAGTTATAAATATATCATCTGACATACTAATAATCAATATTTATCTAGCTTAGTTGCTCATTTTAAGACCTCATATATATCCTTTTGGTCTTAAGTTCAAATCTTGGATTCAACAAAACTTATTTATTCTACTTTAAATAAACATTGTGTTATTTTTTTAATTCTAAAAGGCTTCTTTATAAAATTTGTTTTAGGCATCTTGGCGTGTTGGGCCGACCCAGTGTTTGGATTGACTTATTTGAACTTATCTACTAACATAAACTCATGTGAGACTATTTGGGAGAGTTTAAGGAAACTGATTATGACATATCCATAAGTTGTTTTCAGCTTATTTTCATAAGTTGCTCAAGATAGTTTATATAAAAGTTTATAACCTGTGTAAAAAAAGATAAATTTGATTTTATCTTGTTATAAAAATGACTTATACATAAGCATAATATGATAATTGCTTATAGCTATAAGTGTTTAATTAATTTGTTTATCCCAACAGGTAGTTTATGAAAACAGTTTGACTCAGCGTTACCTTTTGTTAATTTAGACATAAGCACTTATATGTTGTTTATCCAAACAATGGCTCAACGATAAATATTTTTTGTGTTACAGGGTATGTAGTTTTTGCTCTTGAGAAACTATGCTCAAAGTAAGTGTCTTTCCACTCATTAATTAATTCATGCATACAAAAAAGAAAATGTGATGCATATACAGTTTATATTTGGAACTGTGAATCCAGTAAGAAGAATTGTAAAGTTTGTAGCTTACCCAATAATGTGACAGGATGCCACCAGGGGAAGAAAAGTTTGTATCTATTGCAGACATTAAGGGCTGGGGATATGCAAACAGCGACATTCGCGGTTACCTCGGTGCTCTAACCATTCTACAAGATTACTATCCAGAGAGACTGGGAAAGTTGTTCATAGTCCATGCACCTTACATGTTTATGAAAGTATGGAAAATTATTTACCCTTTCATTGATGACAATACCAAGAAGAAGGTAACACTTTTAAAATTGTTACTTGATGTATAAAAATTACTACTACATGTCTTTGAAAATTGAGATGTTCTAGGAGCATAATGCATGTGTTGAATATGTTGCAGATAGTATTTGTTGAGAACAAGAAGCTGAAAGCAACATTGCTTGAAGAGATTGATGAGAGTCAGCTCCCAGAGATATATGGAGGCAAACTTCCATTAGTTCCAATACAAGATTCTTGA

Protein sequence

>MS.gene049170.t1

METVSPEPGNSALDSKHELAKEETKGKILVQDDGALKDSTEAELTKISLMRTLVESRDPSSKEVDDLMIRRFLRARDLDVDKASSMFLKYMKWRKSFVPSGSVSPSEIPDDLAQEKMYVQGVDKKGRPITVAFAAKHFQNKNGLDAFKRYVVFALEKLCSKMPPGEEKFVSIADIKGWGYANSDIRGYLGALTILQDYYPERLGKLFIVHAPYMFMKVWKIIYPFIDDNTKKKIVFVENKKLKATLLEEIDESQLPEIYGGKLPLVPIQDS