Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92314.t1 | XP_003610687.1 | 98.6 | 702 | 9 | 1 | 1 | 701 | 1 | 702 | 8.70E-257 | 896.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92314.t1 | B9DHT4 | 81.4 | 694 | 128 | 1 | 8 | 701 | 15 | 707 | 1.9e-188 | 660.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92314.t1 | G7K2B1 | 98.6 | 702 | 9 | 1 | 1 | 701 | 1 | 702 | 6.3e-257 | 896.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene92314.t1 | TR | TRAF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058334 | MS.gene92314 | 0.809032 | 2.31E-50 | -1.69E-46 |
MS.gene060595 | MS.gene92314 | 0.810051 | 1.40E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene92314 | MS.gene053945 | PPI |
MS.gene92314 | MS.gene042713 | PPI |
MS.gene92314 | MS.gene045983 | PPI |
MS.gene92314 | MS.gene78758 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92314.t1 | MTR_5g005940 | 98.291 | 702 | 11 | 1 | 1 | 701 | 1 | 702 | 0.0 | 1406 |
MS.gene92314.t1 | MTR_1g104870 | 86.291 | 693 | 92 | 2 | 7 | 698 | 12 | 702 | 0.0 | 1188 |
MS.gene92314.t1 | MTR_5g005940 | 97.973 | 592 | 11 | 1 | 1 | 591 | 1 | 592 | 0.0 | 1177 |
MS.gene92314.t1 | MTR_7g094910 | 67.075 | 653 | 210 | 2 | 42 | 693 | 36 | 684 | 0.0 | 858 |
MS.gene92314.t1 | MTR_7g094900 | 68.618 | 615 | 188 | 2 | 80 | 693 | 93 | 703 | 0.0 | 848 |
MS.gene92314.t1 | MTR_7g094910 | 68.983 | 590 | 178 | 2 | 42 | 630 | 36 | 621 | 0.0 | 792 |
MS.gene92314.t1 | MTR_1g012360 | 27.098 | 417 | 259 | 14 | 133 | 522 | 104 | 502 | 2.70e-18 | 89.4 |
MS.gene92314.t1 | MTR_7g094490 | 31.875 | 160 | 95 | 2 | 513 | 660 | 187 | 344 | 1.93e-16 | 82.4 |
MS.gene92314.t1 | MTR_1g018180 | 26.800 | 250 | 175 | 3 | 291 | 532 | 74 | 323 | 3.63e-16 | 80.9 |
MS.gene92314.t1 | MTR_3g466220 | 29.245 | 212 | 145 | 3 | 165 | 373 | 521 | 730 | 1.67e-14 | 77.8 |
MS.gene92314.t1 | MTR_3g466220 | 26.866 | 268 | 182 | 6 | 236 | 490 | 508 | 774 | 2.25e-11 | 67.8 |
MS.gene92314.t1 | MTR_3g466220 | 29.245 | 212 | 145 | 3 | 165 | 373 | 500 | 709 | 1.68e-14 | 77.8 |
MS.gene92314.t1 | MTR_3g466220 | 26.866 | 268 | 182 | 6 | 236 | 490 | 487 | 753 | 2.04e-11 | 67.8 |
MS.gene92314.t1 | MTR_1g072650 | 30.435 | 161 | 94 | 3 | 515 | 660 | 191 | 348 | 6.41e-14 | 74.7 |
MS.gene92314.t1 | MTR_5g087500 | 30.818 | 159 | 89 | 5 | 520 | 659 | 183 | 339 | 2.22e-13 | 72.4 |
MS.gene92314.t1 | MTR_5g087500 | 30.818 | 159 | 89 | 5 | 520 | 659 | 183 | 339 | 2.22e-13 | 72.4 |
MS.gene92314.t1 | MTR_5g087500 | 30.818 | 159 | 89 | 5 | 520 | 659 | 183 | 339 | 2.92e-13 | 72.8 |
MS.gene92314.t1 | MTR_3g069000 | 30.435 | 138 | 84 | 1 | 535 | 660 | 58 | 195 | 1.32e-12 | 69.3 |
MS.gene92314.t1 | MTR_7g007780 | 29.073 | 313 | 189 | 9 | 68 | 370 | 447 | 736 | 1.45e-12 | 71.6 |
MS.gene92314.t1 | MTR_4g131510 | 25.081 | 307 | 205 | 9 | 67 | 368 | 59 | 345 | 3.69e-12 | 69.3 |
MS.gene92314.t1 | MTR_4g121435 | 21.975 | 314 | 219 | 10 | 68 | 375 | 140 | 433 | 4.14e-12 | 69.7 |
MS.gene92314.t1 | MTR_4g485520 | 27.778 | 216 | 154 | 2 | 192 | 407 | 371 | 584 | 4.37e-12 | 69.7 |
MS.gene92314.t1 | MTR_4g485520 | 27.778 | 216 | 154 | 2 | 192 | 407 | 203 | 416 | 5.23e-12 | 69.3 |
MS.gene92314.t1 | MTR_4g063800 | 29.381 | 194 | 135 | 2 | 194 | 387 | 353 | 544 | 9.19e-12 | 68.9 |
MS.gene92314.t1 | MTR_2g034900 | 24.756 | 307 | 204 | 10 | 68 | 368 | 137 | 422 | 1.74e-11 | 67.8 |
MS.gene92314.t1 | MTR_7g086500 | 29.193 | 161 | 89 | 4 | 520 | 659 | 170 | 326 | 2.27e-11 | 67.0 |
MS.gene92314.t1 | MTR_7g086500 | 29.193 | 161 | 89 | 4 | 520 | 659 | 170 | 326 | 3.20e-11 | 65.9 |
MS.gene92314.t1 | MTR_7g097020 | 28.241 | 216 | 152 | 3 | 187 | 402 | 475 | 687 | 3.22e-11 | 67.0 |
MS.gene92314.t1 | MTR_1g094215 | 31.282 | 195 | 132 | 2 | 193 | 387 | 344 | 536 | 6.63e-11 | 65.9 |
MS.gene92314.t1 | MTR_1g094215 | 31.443 | 194 | 131 | 2 | 194 | 387 | 162 | 353 | 7.48e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92314.t1 | AT5G19330 | 79.683 | 694 | 140 | 1 | 8 | 701 | 15 | 707 | 0.0 | 1094 |
MS.gene92314.t1 | AT5G19330 | 73.844 | 627 | 113 | 5 | 8 | 633 | 15 | 591 | 0.0 | 868 |
MS.gene92314.t1 | AT5G13060 | 59.201 | 701 | 277 | 4 | 1 | 694 | 29 | 727 | 0.0 | 832 |
MS.gene92314.t1 | AT3G06190 | 31.013 | 158 | 94 | 2 | 518 | 660 | 182 | 339 | 1.50e-16 | 82.4 |
MS.gene92314.t1 | AT3G06190 | 31.013 | 158 | 94 | 2 | 518 | 660 | 182 | 339 | 2.62e-16 | 82.0 |
MS.gene92314.t1 | AT5G19000 | 30.380 | 158 | 95 | 2 | 518 | 660 | 183 | 340 | 5.55e-15 | 78.2 |
MS.gene92314.t1 | AT5G19000 | 30.380 | 158 | 95 | 2 | 518 | 660 | 183 | 340 | 5.55e-15 | 78.2 |
MS.gene92314.t1 | AT3G03740 | 31.293 | 147 | 84 | 2 | 529 | 659 | 210 | 355 | 1.44e-14 | 77.4 |
MS.gene92314.t1 | AT4G02150 | 24.510 | 306 | 206 | 8 | 68 | 368 | 139 | 424 | 5.25e-14 | 75.9 |
MS.gene92314.t1 | AT4G02150 | 22.590 | 332 | 225 | 10 | 179 | 488 | 106 | 427 | 3.33e-11 | 67.0 |
MS.gene92314.t1 | AT3G43700 | 30.114 | 176 | 103 | 4 | 535 | 692 | 205 | 378 | 7.62e-14 | 74.7 |
MS.gene92314.t1 | AT1G02690 | 24.260 | 338 | 223 | 10 | 38 | 368 | 114 | 425 | 1.24e-13 | 74.7 |
MS.gene92314.t1 | AT3G43700 | 33.566 | 143 | 76 | 3 | 535 | 659 | 205 | 346 | 1.48e-13 | 73.2 |
MS.gene92314.t1 | AT3G43700 | 33.566 | 143 | 76 | 3 | 535 | 659 | 205 | 346 | 1.64e-13 | 73.2 |
MS.gene92314.t1 | AT3G46510 | 28.448 | 232 | 150 | 5 | 194 | 412 | 354 | 582 | 1.86e-13 | 74.3 |
MS.gene92314.t1 | AT2G44900 | 29.677 | 310 | 191 | 8 | 68 | 370 | 458 | 747 | 4.06e-13 | 73.6 |
MS.gene92314.t1 | AT2G44900 | 29.677 | 310 | 191 | 8 | 68 | 370 | 458 | 747 | 4.06e-13 | 73.6 |
MS.gene92314.t1 | AT5G58680 | 25.101 | 247 | 169 | 4 | 284 | 516 | 69 | 313 | 7.52e-13 | 71.2 |
MS.gene92314.t1 | AT4G02150 | 23.875 | 289 | 196 | 7 | 68 | 352 | 139 | 407 | 1.18e-12 | 70.9 |
MS.gene92314.t1 | AT3G01400 | 25.911 | 247 | 163 | 5 | 286 | 516 | 73 | 315 | 1.24e-12 | 70.5 |
MS.gene92314.t1 | AT1G23030 | 28.755 | 233 | 159 | 5 | 163 | 391 | 300 | 529 | 2.80e-12 | 70.5 |
MS.gene92314.t1 | AT5G67340 | 28.846 | 208 | 138 | 5 | 181 | 387 | 416 | 614 | 3.55e-12 | 70.1 |
MS.gene92314.t1 | AT5G67340 | 28.846 | 208 | 138 | 5 | 181 | 387 | 416 | 614 | 3.55e-12 | 70.1 |
MS.gene92314.t1 | AT1G71020 | 29.493 | 217 | 149 | 4 | 193 | 407 | 194 | 408 | 2.88e-11 | 67.0 |
MS.gene92314.t1 | AT2G39760 | 32.117 | 137 | 81 | 1 | 536 | 660 | 195 | 331 | 3.02e-11 | 65.9 |
MS.gene92314.t1 | AT2G39760 | 32.117 | 137 | 81 | 1 | 536 | 660 | 195 | 331 | 3.24e-11 | 65.9 |
MS.gene92314.t1 | AT2G39760 | 32.117 | 137 | 81 | 1 | 536 | 660 | 195 | 331 | 3.24e-11 | 65.9 |
MS.gene92314.t1 | AT1G71020 | 29.493 | 217 | 149 | 4 | 193 | 407 | 342 | 556 | 3.24e-11 | 67.0 |
MS.gene92314.t1 | AT2G39760 | 32.117 | 137 | 81 | 2 | 536 | 660 | 195 | 331 | 3.31e-11 | 66.2 |
Find 139 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATAACTTCTTTCTTTATAT+TGG | 0.143559 | 5.1:+900853 | None:intergenic |
ACTATTCTTGCAGGTCTATT+TGG | 0.171579 | 5.1:-892474 | MS.gene92314:intron |
ATAATGTGCCCGACTTTATT+AGG | 0.176408 | 5.1:-897398 | MS.gene92314:CDS |
AAGACCTCCCATCTAATATT+TGG | 0.221622 | 5.1:+891890 | None:intergenic |
ATAACTTCTTTCTTTATATT+GGG | 0.225357 | 5.1:+900854 | None:intergenic |
CTATTCTTGCAGGTCTATTT+GGG | 0.256343 | 5.1:-892473 | MS.gene92314:intron |
GGAGCCTTGCAACCTGTTAT+TGG | 0.264847 | 5.1:-900824 | MS.gene92314:CDS |
CGATGTTTGATGGTGGTTAT+AGG | 0.270918 | 5.1:-892208 | MS.gene92314:CDS |
CGAAGTGCCCCAAGATAAAA+AGG | 0.288638 | 5.1:+891483 | None:intergenic |
GAGTTGCTTATTGCACTTCT+TGG | 0.303129 | 5.1:-893462 | MS.gene92314:CDS |
AAGAAAGAAGTTATTCTTGC+TGG | 0.306883 | 5.1:-900845 | MS.gene92314:CDS |
CCTCCGAATGAGACTATTAA+TGG | 0.307802 | 5.1:+901446 | None:intergenic |
GAGCCAAAGCAACTCGTCTT+TGG | 0.310880 | 5.1:+893672 | None:intergenic |
TTGAGATTCCAAATATTAGA+TGG | 0.324635 | 5.1:-891898 | MS.gene92314:CDS |
ACAAAGTAATTGCGGATATC+TGG | 0.331538 | 5.1:+891142 | None:intergenic |
ACAATGAGCTGTTGATGTTC+TGG | 0.335518 | 5.1:+901537 | None:intergenic |
AGACTAGAAGAGAAGATTAA+TGG | 0.341903 | 5.1:-897103 | MS.gene92314:CDS |
TGCCCTAAGCAGCAACTTGA+TGG | 0.357336 | 5.1:-893432 | MS.gene92314:CDS |
GAAAGGCCAGAAAAGAAAAC+TGG | 0.357510 | 5.1:-903244 | MS.gene92314:CDS |
GCACCATCAAGTTGCTGCTT+AGG | 0.365309 | 5.1:+893429 | None:intergenic |
AGTTCATTTGCTTGAATTTG+CGG | 0.367407 | 5.1:-901256 | MS.gene92314:CDS |
ATAAGCTAACCTGCGGTGTT+GGG | 0.368341 | 5.1:+893340 | None:intergenic |
TACCTAAGTAATCCAATAAC+AGG | 0.386840 | 5.1:+900812 | None:intergenic |
TAATGTGCCCGACTTTATTA+GGG | 0.393063 | 5.1:-897397 | MS.gene92314:CDS |
AGGTGGAATTAAGAGACTTC+AGG | 0.393094 | 5.1:-897373 | MS.gene92314:CDS |
ATTTCTATTGTAGGCAACTA+AGG | 0.395213 | 5.1:-897149 | MS.gene92314:intron |
TGTTGAAGGAGGTGCTGTTC+CGG | 0.396510 | 5.1:-902925 | MS.gene92314:CDS |
CCTCTGGCTTTCAGAGCAAC+AGG | 0.401065 | 5.1:+900570 | None:intergenic |
AAAGGAAGTGCTTTCGCACT+TGG | 0.408825 | 5.1:-902825 | MS.gene92314:CDS |
GGTTGGTGTGATCGGAAATC+TGG | 0.411500 | 5.1:-900888 | MS.gene92314:CDS |
AATTCAAGCAAATGAACTAA+TGG | 0.415099 | 5.1:+901261 | None:intergenic |
ATTCCAAAGACGAGTTGCTT+TGG | 0.417982 | 5.1:-893675 | MS.gene92314:CDS |
TTTGTTAATGCTCTTACAAA+GGG | 0.418843 | 5.1:-891124 | MS.gene92314:CDS |
AACAGCGTCGCGAGCGTCTC+CGG | 0.425429 | 5.1:+903173 | None:intergenic |
CACCATCAAGTTGCTGCTTA+GGG | 0.427628 | 5.1:+893430 | None:intergenic |
GATGTTTGATGGTGGTTATA+GGG | 0.430996 | 5.1:-892207 | MS.gene92314:intron |
TATACTTTGCTGCAGGTAAA+CGG | 0.436466 | 5.1:-892280 | MS.gene92314:intron |
GGGAGATCTGTGTGTCTTGT+TGG | 0.439720 | 5.1:+903205 | None:intergenic |
AAATGATGAAAACAAGAATC+AGG | 0.443211 | 5.1:-901181 | MS.gene92314:intron |
AGCAGCTGATCAATATCTCT+TGG | 0.451044 | 5.1:-891718 | MS.gene92314:CDS |
AAGATCAACAAGATGCTTCA+AGG | 0.451904 | 5.1:+901503 | None:intergenic |
GCATTTCGTGCGATGTTTGA+TGG | 0.452560 | 5.1:-892218 | MS.gene92314:CDS |
TTCTCAACCTCATGTTCAAA+CGG | 0.455309 | 5.1:+902846 | None:intergenic |
TATAAGCTAACCTGCGGTGT+TGG | 0.455337 | 5.1:+893339 | None:intergenic |
GAGCGTCTCCGGTGAGAGGA+AGG | 0.456477 | 5.1:+903184 | None:intergenic |
AGGGAAGCAGCATTGTTACT+TGG | 0.456874 | 5.1:-900550 | MS.gene92314:CDS |
CTTTGTTAATGCTCTTACAA+AGG | 0.457464 | 5.1:-891125 | MS.gene92314:CDS |
TGCATTGGGGAGATTGGCAC+AGG | 0.469390 | 5.1:-899853 | MS.gene92314:intron |
GCAGTATTAAAACCCGTGTC+AGG | 0.472418 | 5.1:-901386 | MS.gene92314:intron |
CGTTGGAAGAGAAAGAAGAA+AGG | 0.473183 | 5.1:+903118 | None:intergenic |
CTCTCATAAGATATAACAAA+TGG | 0.473224 | 5.1:+893711 | None:intergenic |
AGACAGAGTCGTAGCTTTGT+TGG | 0.473332 | 5.1:+893386 | None:intergenic |
TTATTACAGGTTGGTGTGAT+CGG | 0.484265 | 5.1:-900896 | MS.gene92314:intron |
TTTGAACATGAGGTTGAGAA+AGG | 0.487812 | 5.1:-902843 | MS.gene92314:CDS |
AGCGTGAGTGGCGCGTTTAG+CGG | 0.492689 | 5.1:+903080 | None:intergenic |
GCCGTTGCCGTTTGAACATG+AGG | 0.493881 | 5.1:-902853 | MS.gene92314:CDS |
ACCTGCGGTGTTGGGGATGG+AGG | 0.501253 | 5.1:+893348 | None:intergenic |
GTAACAATGCTGCTTCCCTC+TGG | 0.503185 | 5.1:+900554 | None:intergenic |
GATAAATTAAGTGAAACGCC+AGG | 0.505997 | 5.1:-891461 | MS.gene92314:CDS |
TGCTGTGGCTTTATTCAAGT+TGG | 0.507707 | 5.1:-893409 | MS.gene92314:CDS |
TCTCAATGATGTAGCATTGA+AGG | 0.508118 | 5.1:+891517 | None:intergenic |
GATGGAGGAGCAGCATCTAC+AGG | 0.508182 | 5.1:+893363 | None:intergenic |
TTGTCCAGATTTATCTACAC+TGG | 0.508615 | 5.1:-891783 | MS.gene92314:intron |
GACTGAAGCATTTCTATCAA+AGG | 0.509946 | 5.1:+899909 | None:intergenic |
TAACTTCTTTCTTTATATTG+GGG | 0.511680 | 5.1:+900855 | None:intergenic |
TTATGGCCTTGCAGAGAATG+AGG | 0.514595 | 5.1:-897530 | MS.gene92314:intron |
ATTGTGAATGTGATTGTTGA+AGG | 0.518214 | 5.1:-902939 | MS.gene92314:CDS |
AGAATGGCACATGCTACGCC+TGG | 0.518489 | 5.1:+891089 | None:intergenic |
TGAAGATGTTTAATCAAAGC+CGG | 0.521442 | 5.1:+902906 | None:intergenic |
CCCGACTTTATTAGGGTAGG+TGG | 0.526816 | 5.1:-897390 | MS.gene92314:CDS |
AACTTCTTTCTTTATATTGG+GGG | 0.527300 | 5.1:+900856 | None:intergenic |
CGAAGCATCAAAATCAGAGT+TGG | 0.530641 | 5.1:+901042 | None:intergenic |
CTAACCTGCGGTGTTGGGGA+TGG | 0.534564 | 5.1:+893345 | None:intergenic |
GTGCCATTAATAGTCTCATT+CGG | 0.535005 | 5.1:-901449 | MS.gene92314:CDS |
TGAGATTCCAAATATTAGAT+GGG | 0.536128 | 5.1:-891897 | MS.gene92314:CDS |
ACTTGGACTTCTTGCTGTCA+AGG | 0.539215 | 5.1:-902808 | MS.gene92314:intron |
AAGATCAGCGAGAGCGTGAG+TGG | 0.542909 | 5.1:+903068 | None:intergenic |
TCCTCCATCCCCAACACCGC+AGG | 0.546729 | 5.1:-893349 | MS.gene92314:intron |
TCTTATGAGAGTTTCTGAAA+AGG | 0.548033 | 5.1:-893699 | MS.gene92314:CDS |
AAAGTGCAAAGAGCAGCTGC+TGG | 0.552402 | 5.1:-901228 | MS.gene92314:CDS |
ATTCTTGCAGGTCTATTTGG+GGG | 0.558381 | 5.1:-892471 | MS.gene92314:intron |
GCTGATCAATATCTCTTGGA+AGG | 0.559023 | 5.1:-891714 | MS.gene92314:CDS |
TAATCCAATAACAGGTTGCA+AGG | 0.560106 | 5.1:+900820 | None:intergenic |
TCCACCTACCCTAATAAAGT+CGG | 0.563567 | 5.1:+897389 | None:intergenic |
CTACCATCATCAGAAAAGAA+AGG | 0.563786 | 5.1:-903261 | MS.gene92314:CDS |
AAAGGGGAACTCCAACATCC+AGG | 0.564270 | 5.1:-891107 | MS.gene92314:CDS |
TTGAAGAAGCAAACCTGACA+CGG | 0.565682 | 5.1:+901373 | None:intergenic |
TCGCGAGCGTCTCCGGTGAG+AGG | 0.565708 | 5.1:+903180 | None:intergenic |
TAAGCTAACCTGCGGTGTTG+GGG | 0.566863 | 5.1:+893341 | None:intergenic |
CAGATCTCCCTTCCTCTCAC+CGG | 0.570009 | 5.1:-903192 | MS.gene92314:CDS |
TCAATGTGTAGGACGGAAGG+TGG | 0.574901 | 5.1:-901291 | MS.gene92314:intron |
CACATGCTACGCCTGGATGT+TGG | 0.577907 | 5.1:+891096 | None:intergenic |
ATCTCAATGTGTAGGACGGA+AGG | 0.578215 | 5.1:-901294 | MS.gene92314:intron |
CCACCTACCCTAATAAAGTC+GGG | 0.579855 | 5.1:+897390 | None:intergenic |
TCAAGCAAATGAACTAATGG+TGG | 0.580125 | 5.1:+901264 | None:intergenic |
CAGAGTGTGCAATACCAGCT+TGG | 0.580983 | 5.1:+897626 | None:intergenic |
GAGCATTAACAAAGTAATTG+CGG | 0.581468 | 5.1:+891134 | None:intergenic |
ATCTTACCTCATTCTCTGCA+AGG | 0.582750 | 5.1:+897524 | None:intergenic |
CAGATTTATCTACACTGGAT+CGG | 0.583274 | 5.1:-891778 | MS.gene92314:CDS |
AACCTGTTATTGGATTACTT+AGG | 0.584287 | 5.1:-900814 | MS.gene92314:intron |
ACCTCATGTTCAAACGGCAA+CGG | 0.585671 | 5.1:+902852 | None:intergenic |
TGCTGGTGCATTACGAACCC+TGG | 0.590945 | 5.1:-901211 | MS.gene92314:CDS |
TGCTGCTATTCATTATGAAG+CGG | 0.591200 | 5.1:-901010 | MS.gene92314:intron |
AGCGTCTCCGGTGAGAGGAA+GGG | 0.595419 | 5.1:+903185 | None:intergenic |
CAGGATACACATAACCAAGC+TGG | 0.595987 | 5.1:-897640 | MS.gene92314:CDS |
AGAGATATTGATCAGCTGCT+CGG | 0.596163 | 5.1:+891721 | None:intergenic |
TATTCTTGCAGGTCTATTTG+GGG | 0.597088 | 5.1:-892472 | MS.gene92314:intron |
GAGTCAAGAAGCTTCAGTAG+TGG | 0.600458 | 5.1:+897592 | None:intergenic |
GGAAGCTCTATCGAATTCGT+TGG | 0.603823 | 5.1:+903101 | None:intergenic |
CCATTAATAGTCTCATTCGG+AGG | 0.607900 | 5.1:-901446 | MS.gene92314:CDS |
TGAACAGAATCATGTTGAGT+CGG | 0.610099 | 5.1:+902879 | None:intergenic |
CAAGCTGGTATTGCACACTC+TGG | 0.611889 | 5.1:-897625 | MS.gene92314:CDS |
ATAAATTAAGTGAAACGCCA+GGG | 0.613914 | 5.1:-891460 | MS.gene92314:intron |
GCTGGTATTGCACACTCTGG+CGG | 0.620004 | 5.1:-897622 | MS.gene92314:CDS |
TGAAGAAGCAAACCTGACAC+GGG | 0.621585 | 5.1:+901374 | None:intergenic |
AGCGACTGATTCAGACTGCA+AGG | 0.623102 | 5.1:-900518 | MS.gene92314:intron |
TATTACAGGAGAAGGATGCA+AGG | 0.626011 | 5.1:-891925 | MS.gene92314:intron |
AAAATATTTATTGACCACAA+TGG | 0.632774 | 5.1:-893617 | MS.gene92314:intron |
ATGTGAATACACGATTGCAC+AGG | 0.633277 | 5.1:-891679 | MS.gene92314:intron |
AGGTCTTTGAGCTTATGATG+AGG | 0.635524 | 5.1:-891874 | MS.gene92314:intron |
GCAGCAACTTGATGGTGCTG+TGG | 0.639343 | 5.1:-893424 | MS.gene92314:CDS |
CTGTTGCTCTGAAAGCCAGA+GGG | 0.641542 | 5.1:-900569 | MS.gene92314:CDS |
CATTAATAGTCTCATTCGGA+GGG | 0.643003 | 5.1:-901445 | MS.gene92314:CDS |
GATTCCAAATATTAGATGGG+AGG | 0.643347 | 5.1:-891894 | MS.gene92314:CDS |
TAGGAACATGCATACCATTG+TGG | 0.645222 | 5.1:+893603 | None:intergenic |
CCTGTTGCTCTGAAAGCCAG+AGG | 0.647880 | 5.1:-900570 | MS.gene92314:CDS |
ATTACAGGAGAAGGATGCAA+GGG | 0.647904 | 5.1:-891924 | MS.gene92314:intron |
GGAATTAAGAGACTTCAGGA+TGG | 0.648542 | 5.1:-897369 | MS.gene92314:CDS |
CTGATCAATATCTCTTGGAA+GGG | 0.649009 | 5.1:-891713 | MS.gene92314:CDS |
GTGAATGTGATTGTTGAAGG+AGG | 0.650417 | 5.1:-902936 | MS.gene92314:CDS |
TTTCGTGCGATGTTTGATGG+TGG | 0.657371 | 5.1:-892215 | MS.gene92314:CDS |
ACAGAATCATGTTGAGTCGG+CGG | 0.661283 | 5.1:+902882 | None:intergenic |
CAATGTGTAGGACGGAAGGT+GGG | 0.662821 | 5.1:-901290 | MS.gene92314:intron |
TTGTTAATGCTCTTACAAAG+GGG | 0.666782 | 5.1:-891123 | MS.gene92314:CDS |
TAGGTTCACATTGTACAGAG+AGG | 0.672210 | 5.1:-899942 | MS.gene92314:CDS |
GTGCCCGACTTTATTAGGGT+AGG | 0.672496 | 5.1:-897393 | MS.gene92314:CDS |
TGAAACGTGTTGATTGACGT+CGG | 0.679095 | 5.1:+903146 | None:intergenic |
GATATTGATCAGCTGCTCGG+AGG | 0.684516 | 5.1:+891724 | None:intergenic |
CAACAGCTCATTGTAGACAG+TGG | 0.700521 | 5.1:-901528 | MS.gene92314:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 891102 | 903292 | 891102 | ID=MS.gene92314 |
chr5.1 | mRNA | 891102 | 903292 | 891102 | ID=MS.gene92314.t1;Parent=MS.gene92314 |
chr5.1 | exon | 903058 | 903292 | 903058 | ID=MS.gene92314.t1.exon1;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 903058 | 903292 | 903058 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 902809 | 902966 | 902809 | ID=MS.gene92314.t1.exon2;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 902809 | 902966 | 902809 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 901387 | 901559 | 901387 | ID=MS.gene92314.t1.exon3;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 901387 | 901559 | 901387 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 901182 | 901302 | 901182 | ID=MS.gene92314.t1.exon4;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 901182 | 901302 | 901182 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 901011 | 901085 | 901011 | ID=MS.gene92314.t1.exon5;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 901011 | 901085 | 901011 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 900815 | 900909 | 900815 | ID=MS.gene92314.t1.exon6;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 900815 | 900909 | 900815 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 900519 | 900594 | 900519 | ID=MS.gene92314.t1.exon7;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 900519 | 900594 | 900519 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 899854 | 899961 | 899854 | ID=MS.gene92314.t1.exon8;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 899854 | 899961 | 899854 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 897531 | 897659 | 897531 | ID=MS.gene92314.t1.exon9;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 897531 | 897659 | 897531 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 897353 | 897421 | 897353 | ID=MS.gene92314.t1.exon10;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 897353 | 897421 | 897353 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 897099 | 897158 | 897099 | ID=MS.gene92314.t1.exon11;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 897099 | 897158 | 897099 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 893618 | 893741 | 893618 | ID=MS.gene92314.t1.exon12;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 893618 | 893741 | 893618 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 893350 | 893489 | 893350 | ID=MS.gene92314.t1.exon13;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 893350 | 893489 | 893350 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 892420 | 892483 | 892420 | ID=MS.gene92314.t1.exon14;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 892420 | 892483 | 892420 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 892208 | 892287 | 892208 | ID=MS.gene92314.t1.exon15;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 892208 | 892287 | 892208 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 891875 | 891939 | 891875 | ID=MS.gene92314.t1.exon16;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 891875 | 891939 | 891875 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 891680 | 891797 | 891680 | ID=MS.gene92314.t1.exon17;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 891680 | 891797 | 891680 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 891461 | 891585 | 891461 | ID=MS.gene92314.t1.exon18;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 891461 | 891585 | 891461 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
chr5.1 | exon | 891102 | 891192 | 891102 | ID=MS.gene92314.t1.exon19;Parent=MS.gene92314.t1 |
chr5.1 | CDS | 891102 | 891192 | 891102 | ID=cds.MS.gene92314.t1;Parent=MS.gene92314.t1 |
Gene Sequence |
Protein sequence |