AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060595


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060595.t1 MTR_2g076590 90.639 438 39 1 1 436 1 438 0.0 809
MS.gene060595.t1 MTR_2g076490 88.303 436 33 1 1 436 1 418 0.0 791
MS.gene060595.t1 MTR_2g076610 79.599 299 40 2 89 387 19 296 3.33e-172 484
MS.gene060595.t1 MTR_2g076650 72.996 237 46 3 48 282 15 235 8.48e-116 339
MS.gene060595.t1 MTR_1g012550 27.154 383 234 15 63 433 65 414 2.63e-23 103
MS.gene060595.t1 MTR_2g089440 29.067 375 208 18 93 433 80 430 9.14e-22 98.6
MS.gene060595.t1 MTR_0280s0040 28.000 425 231 24 51 433 38 429 8.62e-21 95.9
MS.gene060595.t1 MTR_3g031580 26.492 419 261 18 34 434 18 407 1.81e-20 94.7
MS.gene060595.t1 MTR_3g031640 28.134 359 219 15 63 403 42 379 4.63e-20 93.6
MS.gene060595.t1 MTR_3g107070 23.873 377 249 11 63 431 41 387 9.52e-20 92.4
MS.gene060595.t1 MTR_7g092050 30.072 276 158 13 60 327 48 296 1.75e-19 91.7
MS.gene060595.t1 MTR_2g089360 29.032 372 201 20 93 429 77 420 2.67e-19 91.3
MS.gene060595.t1 MTR_3g031480 26.699 412 242 19 15 403 9 383 9.41e-19 89.4
MS.gene060595.t1 MTR_3g102400 27.157 394 229 22 27 398 25 382 9.99e-19 89.4
MS.gene060595.t1 MTR_3g031610 26.396 394 249 15 63 436 42 414 1.18e-18 89.0
MS.gene060595.t1 MTR_8g465510 25.175 429 247 14 4 401 3 388 3.46e-18 87.8
MS.gene060595.t1 MTR_2g103810 24.479 384 253 14 60 433 56 412 5.77e-18 87.0
MS.gene060595.t1 MTR_3g031600 28.134 359 219 14 63 403 42 379 3.77e-17 84.3
MS.gene060595.t1 MTR_1g099400 24.105 419 257 16 60 433 33 435 2.00e-16 82.4
MS.gene060595.t1 MTR_2g011160 25.946 370 210 17 63 401 48 384 2.77e-16 81.6
MS.gene060595.t1 MTR_2g011160 25.946 370 210 17 63 401 48 384 3.03e-16 81.6
MS.gene060595.t1 MTR_3g031500 27.887 355 212 15 96 434 2 328 4.96e-16 80.9
MS.gene060595.t1 MTR_2g011170 26.567 335 197 14 93 401 73 384 8.86e-16 80.1
MS.gene060595.t1 MTR_2g011150 25.824 364 218 17 63 401 50 386 9.29e-16 80.1
MS.gene060595.t1 MTR_2g011170 26.567 335 197 14 93 401 73 384 1.01e-15 80.1
MS.gene060595.t1 MTR_0090s0020 24.796 367 220 13 63 401 44 382 1.05e-15 79.7
MS.gene060595.t1 MTR_0090s0020 24.796 367 220 13 63 401 44 382 1.09e-15 79.7
MS.gene060595.t1 MTR_0090s0020 24.796 367 220 13 63 401 44 382 1.33e-15 79.7
MS.gene060595.t1 MTR_3g031470 28.184 369 214 17 63 403 44 389 1.49e-15 79.7
MS.gene060595.t1 MTR_2g080080 23.158 380 244 15 63 431 63 405 1.57e-15 79.3
MS.gene060595.t1 MTR_0090s0020 24.796 367 220 13 63 401 44 382 1.57e-15 79.3
MS.gene060595.t1 MTR_8g030500 25.553 407 243 19 60 434 31 409 2.96e-15 78.6
MS.gene060595.t1 MTR_8g013610 25.067 375 221 12 93 434 78 425 4.51e-15 78.2
MS.gene060595.t1 MTR_8g013600 24.515 412 254 17 52 434 40 423 5.22e-15 77.8
MS.gene060595.t1 MTR_7g056450 24.752 404 206 20 52 406 47 401 5.83e-15 77.4
MS.gene060595.t1 MTR_7g056450 24.752 404 206 20 52 406 37 391 6.62e-15 77.4
MS.gene060595.t1 MTR_5g067290 41.593 113 60 3 91 197 78 190 7.42e-15 76.6
MS.gene060595.t1 MTR_5g067250 26.074 349 197 16 91 407 77 396 1.41e-14 76.6
MS.gene060595.t1 MTR_2g011180 26.075 372 219 18 60 401 46 391 2.76e-14 75.5
MS.gene060595.t1 MTR_2g011180 26.075 372 219 18 60 401 46 391 3.55e-14 75.1
MS.gene060595.t1 MTR_8g011410 24.927 341 219 14 93 411 80 405 4.55e-14 75.1
MS.gene060595.t1 MTR_8g013560 25.668 374 219 16 93 434 77 423 7.70e-14 74.3
MS.gene060595.t1 MTR_2g080090 22.879 389 245 14 63 433 63 414 8.22e-14 73.9
MS.gene060595.t1 MTR_8g465410 25.201 373 226 15 93 435 74 423 8.82e-14 73.9
MS.gene060595.t1 MTR_3g007650 24.940 417 243 17 60 433 46 435 1.12e-13 73.6
MS.gene060595.t1 MTR_8g465580 24.457 368 235 14 93 435 74 423 1.15e-13 73.6
MS.gene060595.t1 MTR_2g089290 26.613 372 192 19 93 424 84 414 2.41e-13 72.8
MS.gene060595.t1 MTR_3g007630 25.837 418 238 20 60 433 45 434 2.93e-13 72.4
MS.gene060595.t1 MTR_7g056623 25.513 341 202 16 93 404 55 372 3.68e-13 72.0
MS.gene060595.t1 MTR_6g043510 27.626 257 148 10 93 339 72 300 4.73e-13 71.6
MS.gene060595.t1 MTR_8g465990 24.699 332 208 14 93 401 77 389 1.13e-12 70.1
MS.gene060595.t1 MTR_8g465990 24.699 332 208 14 93 401 77 389 1.15e-12 70.5
MS.gene060595.t1 MTR_8g465990 24.699 332 208 14 93 401 77 389 1.37e-12 70.1
MS.gene060595.t1 MTR_1g052880 25.696 467 226 28 12 415 7 415 2.09e-12 69.7
MS.gene060595.t1 MTR_8g013580 26.596 376 214 19 93 434 84 431 2.16e-12 69.7
MS.gene060595.t1 MTR_8g011370 23.810 357 203 12 93 411 80 405 2.85e-12 69.3
MS.gene060595.t1 MTR_8g465470 23.582 335 206 13 93 401 106 416 5.80e-12 68.2
MS.gene060595.t1 MTR_5g013070 23.785 391 230 15 63 411 47 411 8.05e-12 67.8
MS.gene060595.t1 MTR_3g020230 24.107 336 202 15 93 401 79 388 2.20e-11 66.2
MS.gene060595.t1 MTR_3g007510 25.359 418 241 19 60 433 44 434 3.39e-11 65.9
MS.gene060595.t1 MTR_3g007510 25.840 387 218 18 91 433 73 434 3.42e-11 65.9
MS.gene060595.t1 MTR_3g007510 25.359 418 241 19 60 433 44 434 3.80e-11 65.9
MS.gene060595.t1 MTR_7g056430 23.513 353 209 16 90 406 410 737 4.46e-11 65.5
MS.gene060595.t1 MTR_8g011430 24.930 357 202 12 93 411 85 413 5.64e-11 64.7
MS.gene060595.t1 MTR_7g056420 23.513 353 209 16 90 406 410 737 5.87e-11 65.1
MS.gene060595.t1 MTR_6g043790 26.848 257 150 10 93 339 77 305 6.92e-11 65.1
MS.gene060595.t1 MTR_4g081675 26.074 349 187 16 91 401 73 388 8.77e-11 64.7
MS.gene060595.t1 MTR_4g114240 25.355 422 274 17 9 403 5 412 9.10e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060595.t1 AT1G78860 48.485 429 210 7 15 435 9 434 1.72e-140 409
MS.gene060595.t1 AT1G78850 48.513 437 203 9 12 435 7 434 6.50e-140 408
MS.gene060595.t1 AT1G78830 42.699 452 225 9 11 432 7 454 1.45e-117 351
MS.gene060595.t1 AT1G16905 42.584 418 211 7 28 435 24 422 2.81e-113 339
MS.gene060595.t1 AT1G78820 41.573 445 224 10 19 432 15 454 8.79e-111 334
MS.gene060595.t1 AT5G35370 26.975 367 212 17 93 433 86 422 9.64e-24 104
MS.gene060595.t1 AT4G00340 27.838 370 230 13 54 408 31 378 2.09e-21 97.8
MS.gene060595.t1 AT4G00340 27.568 370 231 13 54 408 31 378 2.14e-21 97.4
MS.gene060595.t1 AT3G12000 28.342 374 213 17 63 406 56 404 1.50e-19 90.9
MS.gene060595.t1 AT4G32300 24.518 363 237 13 60 412 52 387 4.17e-19 90.5
MS.gene060595.t1 AT4G11900 26.376 436 222 22 63 435 49 448 2.12e-18 88.2
MS.gene060595.t1 AT4G11900 26.376 436 222 22 63 435 49 448 2.12e-18 88.2
MS.gene060595.t1 AT4G11900 26.376 436 222 22 63 435 49 448 2.17e-18 88.2
MS.gene060595.t1 AT4G11900 26.376 436 222 22 63 435 49 448 2.17e-18 88.2
MS.gene060595.t1 AT4G11900 26.376 436 222 22 63 435 49 448 2.21e-18 88.2
MS.gene060595.t1 AT4G11900 26.376 436 222 22 63 435 49 448 2.39e-18 88.2
MS.gene060595.t1 AT4G11900 26.376 436 222 22 63 435 49 448 2.52e-18 88.2
MS.gene060595.t1 AT4G11900 26.376 436 222 22 63 435 49 448 2.52e-18 88.2
MS.gene060595.t1 AT4G21390 26.126 333 205 13 93 401 79 394 7.46e-18 86.7
MS.gene060595.t1 AT4G21390 26.126 333 205 13 93 401 79 394 7.66e-18 86.7
MS.gene060595.t1 AT4G11900 26.733 404 199 20 93 435 12 379 1.25e-17 85.9
MS.gene060595.t1 AT4G11900 26.733 404 199 20 93 435 12 379 1.65e-17 85.5
MS.gene060595.t1 AT1G65790 27.077 325 205 11 92 401 78 385 9.08e-17 83.2
MS.gene060595.t1 AT1G65790 27.077 325 205 11 92 401 78 385 9.08e-17 83.2
MS.gene060595.t1 AT1G65790 27.077 325 205 11 92 401 78 385 1.25e-16 82.8
MS.gene060595.t1 AT1G11330 25.469 373 228 16 63 405 54 406 6.22e-16 80.9
MS.gene060595.t1 AT1G11330 25.469 373 228 16 63 405 54 406 6.34e-16 80.9
MS.gene060595.t1 AT1G11330 25.469 373 228 16 63 405 54 406 6.87e-16 80.5
MS.gene060595.t1 AT2G19130 22.738 409 262 17 51 431 34 416 3.01e-15 78.6
MS.gene060595.t1 AT1G11303 25.074 339 205 17 93 403 77 394 4.43e-15 78.2
MS.gene060595.t1 AT4G27290 23.131 428 247 18 9 401 7 387 9.80e-14 73.9
MS.gene060595.t1 AT4G27290 23.131 428 247 18 9 401 7 387 1.07e-13 73.9
MS.gene060595.t1 AT2G41890 26.603 312 192 13 108 406 96 383 1.19e-13 73.6
MS.gene060595.t1 AT1G11340 27.246 345 194 18 93 405 137 456 1.80e-12 69.7
MS.gene060595.t1 AT4G03230 26.648 349 202 18 113 433 30 352 2.00e-12 69.7
MS.gene060595.t1 AT1G11340 27.246 345 194 18 93 405 137 456 2.12e-12 69.7
MS.gene060595.t1 AT1G11340 27.246 345 194 18 93 405 69 388 2.88e-12 69.3
MS.gene060595.t1 AT1G61380 25.000 340 203 15 93 403 70 386 7.02e-12 68.2
MS.gene060595.t1 AT1G61390 24.138 348 196 18 93 403 91 407 1.60e-11 67.0

Find 88 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGAGAGATGTGGAAAATT+TGG 0.148348 2.2:-17468419 MS.gene060595:CDS
AAGATTCTGGATCAGATTTA+AGG 0.173547 2.2:+17468657 None:intergenic
AAAGGCAACAACACCTTTAT+TGG 0.185484 2.2:+17468976 None:intergenic
GATGAAAACCAATATTTAAT+TGG 0.200636 2.2:+17468722 None:intergenic
CCGTTAGAGAATGGAATATT+TGG 0.209059 2.2:-17468365 MS.gene060595:CDS
ACCTTTAAATTTGAAAATTC+AGG 0.228793 2.2:-17469274 MS.gene060595:CDS
CTCCTAAGCCAATTAAATAT+TGG 0.243041 2.2:-17468730 MS.gene060595:CDS
TAAAGTGAGAAATGAGAGTT+TGG 0.261429 2.2:+17469351 None:intergenic
CATATTCCTCCTAATGGCTT+AGG 0.281790 2.2:+17468323 None:intergenic
TGGTCCTTATAGTTTGGTTT+TGG 0.289630 2.2:-17468792 MS.gene060595:CDS
GGTAACCCAGTTGGTGAAAA+TGG 0.292216 2.2:-17469076 MS.gene060595:CDS
AATCCATACTCAAAAGATTC+TGG 0.292898 2.2:+17468644 None:intergenic
CAGAGAGATGTGGAAAATTT+GGG 0.316496 2.2:-17468418 MS.gene060595:CDS
TCATCCTACAGATACCATTT+TGG 0.317797 2.2:-17468885 MS.gene060595:CDS
GAGCTAAAGTGAAGGCATTT+GGG 0.319982 2.2:+17469158 None:intergenic
ATTCTAAAGGTAAATTTGTT+TGG 0.320757 2.2:-17468919 MS.gene060595:CDS
TAAATATTGATCTACCAAAA+TGG 0.326434 2.2:+17468871 None:intergenic
GTTGCCAATTCTACCACTTT+TGG 0.332677 2.2:-17468611 MS.gene060595:CDS
CAAACAAACACTTCCAATAA+AGG 0.333204 2.2:-17468989 MS.gene060595:CDS
TAATATAAAGCCAAACCTTT+AGG 0.338248 2.2:+17468767 None:intergenic
TATCTTAGGCTTGGAATTGA+TGG 0.341629 2.2:-17468545 MS.gene060595:CDS
AGAGCTAAAGTGAAGGCATT+TGG 0.349249 2.2:+17469157 None:intergenic
TGTTGATGGTCCTTATAGTT+TGG 0.357941 2.2:-17468798 MS.gene060595:CDS
ATAAAGGTGTTGTTGCCTTT+AGG 0.359229 2.2:-17468973 MS.gene060595:CDS
TCTTTGCATATTCCTCCTAA+TGG 0.363442 2.2:+17468317 None:intergenic
GGCTCCAAAACCAAACTATA+AGG 0.363469 2.2:+17468788 None:intergenic
GGCTTATCTTATTACTTATT+AGG 0.367191 2.2:+17468071 None:intergenic
GGACCATTCATAGTAGAATA+TGG 0.369527 2.2:-17469244 MS.gene060595:CDS
ATTGCCAAAAGTGGTAGAAT+TGG 0.375193 2.2:+17468607 None:intergenic
TGGAAAATTTGGGCTTTGTA+AGG 0.381567 2.2:-17468408 MS.gene060595:CDS
ATAGTACCTTAACATATCTT+AGG 0.400121 2.2:-17468559 MS.gene060595:CDS
TTTCATTACTACAAACTTGA+AGG 0.409710 2.2:-17468287 MS.gene060595:CDS
AAATGTAGCCCTAAGCCATT+AGG 0.409734 2.2:-17468332 MS.gene060595:CDS
TTTGAAAATTCAGGTGAACT+TGG 0.414357 2.2:-17469265 MS.gene060595:CDS
TTGATGTGCGTAGTGGTGTT+TGG 0.414658 2.2:-17468496 MS.gene060595:CDS
GCCTTTAGGTTACTCTCAAA+TGG 0.414987 2.2:-17468959 MS.gene060595:CDS
AACACCTTGAGTTATCCTTA+TGG 0.422203 2.2:+17468162 None:intergenic
GATCAATATTTAAAACCTAA+TGG 0.423070 2.2:-17468860 MS.gene060595:CDS
AGATTCTGGATCAGATTTAA+GGG 0.430891 2.2:+17468658 None:intergenic
CCCAACACACTTGCAATCCT+TGG 0.436348 2.2:+17468193 None:intergenic
ACCTTAACATATCTTAGGCT+TGG 0.444137 2.2:-17468554 MS.gene060595:CDS
TCCAAGCCTAAGATATGTTA+AGG 0.448009 2.2:+17468553 None:intergenic
TACATGAGCAAATACACTAT+TGG 0.453668 2.2:-17468254 MS.gene060595:CDS
AAAGTGAGAAATGAGAGTTT+GGG 0.460487 2.2:+17469352 None:intergenic
AACCAATATTTAATTGGCTT+AGG 0.460614 2.2:+17468728 None:intergenic
TTCACTTTAGCTCTTAGAAT+CGG 0.462669 2.2:-17469148 MS.gene060595:CDS
TGTTGGGTATTTCTACCATA+AGG 0.465236 2.2:-17468177 MS.gene060595:CDS
ATATTCCTCCTAATGGCTTA+GGG 0.466601 2.2:+17468324 None:intergenic
CCAAGGATTGCAAGTGTGTT+GGG 0.487333 2.2:-17468193 MS.gene060595:CDS
CCTCCATATTCTACTATGAA+TGG 0.498115 2.2:+17469241 None:intergenic
AATGATACTATTGCCAAAAG+TGG 0.507158 2.2:+17468598 None:intergenic
ACCATTTGAGAGTAACCTAA+AGG 0.511899 2.2:+17468958 None:intergenic
TTCAATGCTCCATTTCAAGT+TGG 0.513788 2.2:-17469196 MS.gene060595:CDS
TAGAGAATGGAATATTTGGT+TGG 0.516234 2.2:-17468361 MS.gene060595:CDS
GTTAAGGTACTATTATTCAC+TGG 0.525455 2.2:+17468569 None:intergenic
ATGCTGATGGAAGAATTGTT+TGG 0.528512 2.2:-17469012 MS.gene060595:CDS
CCAAATATTCCATTCTCTAA+CGG 0.531749 2.2:+17468365 None:intergenic
CTTGTGTTGGCTAATGCTGA+TGG 0.532407 2.2:-17469025 MS.gene060595:CDS
GTTGGTTGTCCGTTAGAGAA+TGG 0.553968 2.2:-17468374 MS.gene060595:CDS
TGTAAGGATAATCAATGTGT+TGG 0.555696 2.2:-17468392 MS.gene060595:CDS
ATAAGGATAACTCAAGGTGT+TGG 0.565977 2.2:-17468160 MS.gene060595:CDS
TTGGCAATAGTATCATTGGT+AGG 0.574498 2.2:-17468592 MS.gene060595:CDS
CTTTGATGAAGATGAAGATG+AGG 0.577519 2.2:-17468456 MS.gene060595:CDS
ACCAAGGATTGCAAGTGTGT+TGG 0.584572 2.2:-17468194 MS.gene060595:CDS
AGCTAAAGTGAAGGCATTTG+GGG 0.586642 2.2:+17469159 None:intergenic
TGCTGATGGAAATCTTGTGT+TGG 0.597497 2.2:-17469038 MS.gene060595:CDS
TGTAGCCCTAAGCCATTAGG+AGG 0.598516 2.2:-17468329 MS.gene060595:CDS
AATTGCATGAGCAATTAAGA+TGG 0.598666 2.2:+17469312 None:intergenic
ACTACGCACATCAAGGAAGT+AGG 0.599160 2.2:+17468505 None:intergenic
GTTACTCTCAAATGGTAACA+TGG 0.602406 2.2:-17468951 MS.gene060595:CDS
AAACACCACTACGCACATCA+AGG 0.602531 2.2:+17468498 None:intergenic
AAGTGAGAAATGAGAGTTTG+GGG 0.605346 2.2:+17469353 None:intergenic
CTTAATAAAACCCACATGTG+TGG 0.606669 2.2:+17468097 None:intergenic
TATTTGCTTCCCATACCCAC+CGG 0.610134 2.2:+17469101 None:intergenic
TCTACCAAAATGGTATCTGT+AGG 0.615041 2.2:+17468881 None:intergenic
AGTTCAAAATACCACACATG+TGG 0.615945 2.2:-17468108 MS.gene060595:CDS
GCAAATAGAGGTAACCCAGT+TGG 0.619075 2.2:-17469085 MS.gene060595:CDS
AGAGTAACTGAAGCTAATTG+TGG 0.621853 2.2:-17468227 MS.gene060595:CDS
TGGGTATGGGAAGCAAATAG+AGG 0.632819 2.2:-17469097 MS.gene060595:CDS
TACTTCCTTGATGTGCGTAG+TGG 0.646724 2.2:-17468503 MS.gene060595:CDS
TGTCAATTACCAGAGAGATG+TGG 0.650824 2.2:-17468428 MS.gene060595:CDS
TAGAATCGGACTTCAACGAT+CGG 0.657059 2.2:-17469134 MS.gene060595:CDS
TCTACCATAAGGATAACTCA+AGG 0.669490 2.2:-17468166 MS.gene060595:CDS
GTTCAAAATACCACACATGT+GGG 0.676015 2.2:-17468107 MS.gene060595:CDS
TTGTGGAAACAAATGTACCA+AGG 0.678916 2.2:-17468210 MS.gene060595:CDS
TTTGATGAAGATGAAGATGA+GGG 0.690735 2.2:-17468455 MS.gene060595:CDS
GATTCTAAGAGCTAAAGTGA+AGG 0.699510 2.2:+17469150 None:intergenic
CCATTCATAGTAGAATATGG+AGG 0.699892 2.2:-17469241 MS.gene060595:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACCTTTAAATTTGAAAATTC+AGG - chr2.2:17468178-17468197 MS.gene060595:CDS 20.0%
!! GATGAAAACCAATATTTAAT+TGG + chr2.2:17468733-17468752 None:intergenic 20.0%
!! TAAATATTGATCTACCAAAA+TGG + chr2.2:17468584-17468603 None:intergenic 20.0%
!!! AATTTAAAGGTTTCATTTTG+TGG + chr2.2:17468169-17468188 None:intergenic 20.0%
!!! ACCTGAATTTTCAAATTTAA+AGG + chr2.2:17468182-17468201 None:intergenic 20.0%
!!! ATGGTTTTAATTGATTCTAA+AGG - chr2.2:17468520-17468539 MS.gene060595:CDS 20.0%
!!! ATTCTAAAGGTAAATTTGTT+TGG - chr2.2:17468533-17468552 MS.gene060595:CDS 20.0%
!!! GATCAATATTTAAAACCTAA+TGG - chr2.2:17468592-17468611 MS.gene060595:CDS 20.0%
! ATAGTACCTTAACATATCTT+AGG - chr2.2:17468893-17468912 MS.gene060595:CDS 25.0%
! TAATATAAAGCCAAACCTTT+AGG + chr2.2:17468688-17468707 None:intergenic 25.0%
! TCAGAAAAAGAAAATGTTGA+TGG - chr2.2:17468640-17468659 MS.gene060595:CDS 25.0%
! TTGTAAAAACCAACTTGAAA+TGG + chr2.2:17468268-17468287 None:intergenic 25.0%
! TTTCATTACTACAAACTTGA+AGG - chr2.2:17469165-17469184 MS.gene060595:CDS 25.0%
!! AACCAATATTTAATTGGCTT+AGG + chr2.2:17468727-17468746 None:intergenic 25.0%
!!! AATATTGGTTTTCATCTTCT+TGG - chr2.2:17468737-17468756 MS.gene060595:CDS 25.0%
!!! GAAAATGGTACTTTTTCATT+AGG - chr2.2:17468391-17468410 MS.gene060595:CDS 25.0%
!!! TCTTGGTTTTCATTTGAAAA+AGG - chr2.2:17468754-17468773 MS.gene060595:CDS 25.0%
AAAGTGAGAAATGAGAGTTT+GGG + chr2.2:17468103-17468122 None:intergenic 30.0%
AAGATTCTGGATCAGATTTA+AGG + chr2.2:17468798-17468817 None:intergenic 30.0%
AATCCATACTCAAAAGATTC+TGG + chr2.2:17468811-17468830 None:intergenic 30.0%
AATGATACTATTGCCAAAAG+TGG + chr2.2:17468857-17468876 None:intergenic 30.0%
AATTGCATGAGCAATTAAGA+TGG + chr2.2:17468143-17468162 None:intergenic 30.0%
AGATTCTGGATCAGATTTAA+GGG + chr2.2:17468797-17468816 None:intergenic 30.0%
CAAACAAACACTTCCAATAA+AGG - chr2.2:17468463-17468482 MS.gene060595:CDS 30.0%
CCAAATATTCCATTCTCTAA+CGG + chr2.2:17469090-17469109 None:intergenic 30.0%
CTCCTAAGCCAATTAAATAT+TGG - chr2.2:17468722-17468741 MS.gene060595:CDS 30.0%
TAAAGTGAGAAATGAGAGTT+TGG + chr2.2:17468104-17468123 None:intergenic 30.0%
TACATGAGCAAATACACTAT+TGG - chr2.2:17469198-17469217 MS.gene060595:CDS 30.0%
TAGAGAATGGAATATTTGGT+TGG - chr2.2:17469091-17469110 MS.gene060595:CDS 30.0%
TGTAAGGATAATCAATGTGT+TGG - chr2.2:17469060-17469079 MS.gene060595:CDS 30.0%
TTTGAAAATTCAGGTGAACT+TGG - chr2.2:17468187-17468206 MS.gene060595:CDS 30.0%
TTTGATGAAGATGAAGATGA+GGG - chr2.2:17468997-17469016 MS.gene060595:CDS 30.0%
! ACTTTTGGCAATAGTATCAT+TGG - chr2.2:17468856-17468875 MS.gene060595:CDS 30.0%
! GTTAAGGTACTATTATTCAC+TGG + chr2.2:17468886-17468905 None:intergenic 30.0%
!! AGTCTACTAACAAGTTTTGA+AGG + chr2.2:17468619-17468638 None:intergenic 30.0%
!! TTCACTTTAGCTCTTAGAAT+CGG - chr2.2:17468304-17468323 MS.gene060595:CDS 30.0%
AAAGGCAACAACACCTTTAT+TGG + chr2.2:17468479-17468498 None:intergenic 35.0%
AACACCTTGAGTTATCCTTA+TGG + chr2.2:17469293-17469312 None:intergenic 35.0%
AAGTGAGAAATGAGAGTTTG+GGG + chr2.2:17468102-17468121 None:intergenic 35.0%
ACCATTTGAGAGTAACCTAA+AGG + chr2.2:17468497-17468516 None:intergenic 35.0%
ACCTTAACATATCTTAGGCT+TGG - chr2.2:17468898-17468917 MS.gene060595:CDS 35.0%
AGAGTAACTGAAGCTAATTG+TGG - chr2.2:17469225-17469244 MS.gene060595:CDS 35.0%
AGTTCAAAATACCACACATG+TGG - chr2.2:17469344-17469363 MS.gene060595:CDS 35.0%
ATAAGGATAACTCAAGGTGT+TGG - chr2.2:17469292-17469311 MS.gene060595:CDS 35.0%
ATATTCCTCCTAATGGCTTA+GGG + chr2.2:17469131-17469150 None:intergenic 35.0%
ATGCTGATGGAAGAATTGTT+TGG - chr2.2:17468440-17468459 MS.gene060595:CDS 35.0%
ATTGCCAAAAGTGGTAGAAT+TGG + chr2.2:17468848-17468867 None:intergenic 35.0%
CAGAGAGATGTGGAAAATTT+GGG - chr2.2:17469034-17469053 MS.gene060595:CDS 35.0%
CCATTCATAGTAGAATATGG+AGG - chr2.2:17468211-17468230 MS.gene060595:CDS 35.0%
CCGTTAGAGAATGGAATATT+TGG - chr2.2:17469087-17469106 MS.gene060595:CDS 35.0%
CCTCCATATTCTACTATGAA+TGG + chr2.2:17468214-17468233 None:intergenic 35.0%
CTTAATAAAACCCACATGTG+TGG + chr2.2:17469358-17469377 None:intergenic 35.0%
CTTTGATGAAGATGAAGATG+AGG - chr2.2:17468996-17469015 MS.gene060595:CDS 35.0%
GGACCATTCATAGTAGAATA+TGG - chr2.2:17468208-17468227 MS.gene060595:CDS 35.0%
GTTACTCTCAAATGGTAACA+TGG - chr2.2:17468501-17468520 MS.gene060595:CDS 35.0%
GTTCAAAATACCACACATGT+GGG - chr2.2:17469345-17469364 MS.gene060595:CDS 35.0%
TATCTTAGGCTTGGAATTGA+TGG - chr2.2:17468907-17468926 MS.gene060595:CDS 35.0%
TCCAAGCCTAAGATATGTTA+AGG + chr2.2:17468902-17468921 None:intergenic 35.0%
TCTACCAAAATGGTATCTGT+AGG + chr2.2:17468574-17468593 None:intergenic 35.0%
TCTACCATAAGGATAACTCA+AGG - chr2.2:17469286-17469305 MS.gene060595:CDS 35.0%
TCTTTGCATATTCCTCCTAA+TGG + chr2.2:17469138-17469157 None:intergenic 35.0%
TTGGCAATAGTATCATTGGT+AGG - chr2.2:17468860-17468879 MS.gene060595:CDS 35.0%
TTGTGGAAACAAATGTACCA+AGG - chr2.2:17469242-17469261 MS.gene060595:CDS 35.0%
! AAGTACCATTTTCACCAACT+GGG + chr2.2:17468384-17468403 None:intergenic 35.0%
! GATTCTAAGAGCTAAAGTGA+AGG + chr2.2:17468305-17468324 None:intergenic 35.0%
! TCATCCTACAGATACCATTT+TGG - chr2.2:17468567-17468586 MS.gene060595:CDS 35.0%
! TGGAAAATTTGGGCTTTGTA+AGG - chr2.2:17469044-17469063 MS.gene060595:CDS 35.0%
! TGTTGGGTATTTCTACCATA+AGG - chr2.2:17469275-17469294 MS.gene060595:CDS 35.0%
! TTCAATGCTCCATTTCAAGT+TGG - chr2.2:17468256-17468275 MS.gene060595:CDS 35.0%
!! AAAGTACCATTTTCACCAAC+TGG + chr2.2:17468385-17468404 None:intergenic 35.0%
!! ATAAAGGTGTTGTTGCCTTT+AGG - chr2.2:17468479-17468498 MS.gene060595:CDS 35.0%
!! GATCCAGAATCTTTTGAGTA+TGG - chr2.2:17468805-17468824 MS.gene060595:CDS 35.0%
!! TGGTCCTTATAGTTTGGTTT+TGG - chr2.2:17468660-17468679 MS.gene060595:CDS 35.0%
!! TGTTGATGGTCCTTATAGTT+TGG - chr2.2:17468654-17468673 MS.gene060595:CDS 35.0%
!!! ACAAGTTTTGAAGGACCATT+AGG + chr2.2:17468610-17468629 None:intergenic 35.0%
!!! ACTTTTTCATTAGGTGCTGA+TGG - chr2.2:17468400-17468419 MS.gene060595:CDS 35.0%
!!! CACACATGTGGGTTTTATTA+AGG - chr2.2:17469356-17469375 MS.gene060595:CDS 35.0%
AAATGTAGCCCTAAGCCATT+AGG - chr2.2:17469120-17469139 MS.gene060595:CDS 40.0%
CATATTCCTCCTAATGGCTT+AGG + chr2.2:17469132-17469151 None:intergenic 40.0%
CCAGAGAGATGTGGAAAATT+TGG - chr2.2:17469033-17469052 MS.gene060595:CDS 40.0%
GGCTCCAAAACCAAACTATA+AGG + chr2.2:17468667-17468686 None:intergenic 40.0%
TAGAATCGGACTTCAACGAT+CGG - chr2.2:17468318-17468337 MS.gene060595:CDS 40.0%
TGCTGATGGAAATCTTGTGT+TGG - chr2.2:17468414-17468433 MS.gene060595:CDS 40.0%
TGTCAATTACCAGAGAGATG+TGG - chr2.2:17469024-17469043 MS.gene060595:CDS 40.0%
! CCAAATTTTCCACATCTCTC+TGG + chr2.2:17469036-17469055 None:intergenic 40.0%
! GCCTTTAGGTTACTCTCAAA+TGG - chr2.2:17468493-17468512 MS.gene060595:CDS 40.0%
! GTTGCCAATTCTACCACTTT+TGG - chr2.2:17468841-17468860 MS.gene060595:CDS 40.0%
!! AGAGCTAAAGTGAAGGCATT+TGG + chr2.2:17468298-17468317 None:intergenic 40.0%
!! AGCTAAAGTGAAGGCATTTG+GGG + chr2.2:17468296-17468315 None:intergenic 40.0%
!! GAGCTAAAGTGAAGGCATTT+GGG + chr2.2:17468297-17468316 None:intergenic 40.0%
!!! AGTTTGGTTTTGGAGCCTAA+AGG - chr2.2:17468670-17468689 MS.gene060595:CDS 40.0%
AAACACCACTACGCACATCA+AGG + chr2.2:17468957-17468976 None:intergenic 45.0%
ACCAAGGATTGCAAGTGTGT+TGG - chr2.2:17469258-17469277 MS.gene060595:CDS 45.0%
ACTACGCACATCAAGGAAGT+AGG + chr2.2:17468950-17468969 None:intergenic 45.0%
CCAAGGATTGCAAGTGTGTT+GGG - chr2.2:17469259-17469278 MS.gene060595:CDS 45.0%
GCAAATAGAGGTAACCCAGT+TGG - chr2.2:17468367-17468386 MS.gene060595:CDS 45.0%
GTTGGTTGTCCGTTAGAGAA+TGG - chr2.2:17469078-17469097 MS.gene060595:CDS 45.0%
TACTTCCTTGATGTGCGTAG+TGG - chr2.2:17468949-17468968 MS.gene060595:CDS 45.0%
TATTTGCTTCCCATACCCAC+CGG + chr2.2:17468354-17468373 None:intergenic 45.0%
TGGGTATGGGAAGCAAATAG+AGG - chr2.2:17468355-17468374 MS.gene060595:CDS 45.0%
TTGATGTGCGTAGTGGTGTT+TGG - chr2.2:17468956-17468975 MS.gene060595:CDS 45.0%
!! CTTGTGTTGGCTAATGCTGA+TGG - chr2.2:17468427-17468446 MS.gene060595:CDS 45.0%
!! GGTAACCCAGTTGGTGAAAA+TGG - chr2.2:17468376-17468395 MS.gene060595:CDS 45.0%
!!! GGTTTTGGAGCCTAAAGGTT+TGG - chr2.2:17468675-17468694 MS.gene060595:CDS 45.0%
CCCAACACACTTGCAATCCT+TGG + chr2.2:17469262-17469281 None:intergenic 50.0%
TGTAGCCCTAAGCCATTAGG+AGG - chr2.2:17469123-17469142 MS.gene060595:CDS 50.0%
! AACGATCGGAGCAGCTTTTC+CGG - chr2.2:17468332-17468351 MS.gene060595:CDS 50.0%
! AGCAGCTTTTCCGGTGGGTA+TGG - chr2.2:17468341-17468360 MS.gene060595:CDS 55.0%
! ATCGGAGCAGCTTTTCCGGT+GGG - chr2.2:17468336-17468355 MS.gene060595:CDS 55.0%
! GCAGCTTTTCCGGTGGGTAT+GGG - chr2.2:17468342-17468361 MS.gene060595:CDS 55.0%
! GATCGGAGCAGCTTTTCCGG+TGG - chr2.2:17468335-17468354 MS.gene060595:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 17468082 17469392 17468082 ID=MS.gene060595
chr2.2 mRNA 17468082 17469392 17468082 ID=MS.gene060595.t1;Parent=MS.gene060595
chr2.2 exon 17468082 17469392 17468082 ID=MS.gene060595.t1.exon1;Parent=MS.gene060595.t1
chr2.2 CDS 17468082 17469392 17468082 ID=cds.MS.gene060595.t1;Parent=MS.gene060595.t1
Gene Sequence

>MS.gene060595

ATGTCTATTATTCTTAACCCCAAACTCTCATTTCTCACTTTATTGTTCTTTTCATCTGCCATCTTAATTGCTCATGCAATTGTTCCACAAAATGAAACCTTTAAATTTGAAAATTCAGGTGAACTTGGACCATTCATAGTAGAATATGGAGGTGATTACAGAATGATAAGCATATTCAATGCTCCATTTCAAGTTGGTTTTTACAACACTACCCCAAATGCCTTCACTTTAGCTCTTAGAATCGGACTTCAACGATCGGAGCAGCTTTTCCGGTGGGTATGGGAAGCAAATAGAGGTAACCCAGTTGGTGAAAATGGTACTTTTTCATTAGGTGCTGATGGAAATCTTGTGTTGGCTAATGCTGATGGAAGAATTGTTTGGCAAACAAACACTTCCAATAAAGGTGTTGTTGCCTTTAGGTTACTCTCAAATGGTAACATGGTTTTAATTGATTCTAAAGGTAAATTTGTTTGGCAAAGTTTTGATCATCCTACAGATACCATTTTGGTAGATCAATATTTAAAACCTAATGGTCCTTCAAAACTTGTTAGTAGACTTTCAGAAAAAGAAAATGTTGATGGTCCTTATAGTTTGGTTTTGGAGCCTAAAGGTTTGGCTTTATATTATAAGAGTAAAAATTCTCCTAAGCCAATTAAATATTGGTTTTCATCTTCTTGGTTTTCATTTGAAAAAGGCTCATTAGAAAATGTCACCCTTAAATCTGATCCAGAATCTTTTGAGTATGGATTTGATTTTTTTGTTGCCAATTCTACCACTTTTGGCAATAGTATCATTGGTAGGCCAGTGAATAATAGTACCTTAACATATCTTAGGCTTGGAATTGATGGTAATATTAAATTTCACACCTACTTCCTTGATGTGCGTAGTGGTGTTTGGAAAGTGACATACACTCTCTTTGATGAAGATGAAGATGAGGGTGAGTGTCAATTACCAGAGAGATGTGGAAAATTTGGGCTTTGTAAGGATAATCAATGTGTTGGTTGTCCGTTAGAGAATGGAATATTTGGTTGGAGTAATAAATGTAGCCCTAAGCCATTAGGAGGAATATGCAAAGAAAGTGAATTTCATTACTACAAACTTGAAGGAGTTGAGCATTACATGAGCAAATACACTATTGGTGATAGAGTAACTGAAGCTAATTGTGGAAACAAATGTACCAAGGATTGCAAGTGTGTTGGGTATTTCTACCATAAGGATAACTCAAGGTGTTGGATAGCTTATGATCTTCAAACTCTTACTAGAGTTCAAAATACCACACATGTGGGTTTTATTAAGGTGCCTAATAAGTAA

Protein sequence

>MS.gene060595.t1

MSIILNPKLSFLTLLFFSSAILIAHAIVPQNETFKFENSGELGPFIVEYGGDYRMISIFNAPFQVGFYNTTPNAFTLALRIGLQRSEQLFRWVWEANRGNPVGENGTFSLGADGNLVLANADGRIVWQTNTSNKGVVAFRLLSNGNMVLIDSKGKFVWQSFDHPTDTILVDQYLKPNGPSKLVSRLSEKENVDGPYSLVLEPKGLALYYKSKNSPKPIKYWFSSSWFSFEKGSLENVTLKSDPESFEYGFDFFVANSTTFGNSIIGRPVNNSTLTYLRLGIDGNIKFHTYFLDVRSGVWKVTYTLFDEDEDEGECQLPERCGKFGLCKDNQCVGCPLENGIFGWSNKCSPKPLGGICKESEFHYYKLEGVEHYMSKYTIGDRVTEANCGNKCTKDCKCVGYFYHKDNSRCWIAYDLQTLTRVQNTTHVGFIKVPNK