Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92409.t1 | XP_003627780.1 | 98.1 | 314 | 6 | 0 | 1 | 314 | 1 | 314 | 4.70E-170 | 607.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92409.t1 | P51074 | 71.0 | 314 | 91 | 0 | 1 | 314 | 1 | 314 | 3.6e-126 | 452.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92409.t1 | G7LF88 | 98.1 | 314 | 6 | 0 | 1 | 314 | 1 | 314 | 3.4e-170 | 607.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056200 | MS.gene92409 | 0.822227 | 2.65E-53 | -1.69E-46 |
| MS.gene058382 | MS.gene92409 | 0.814403 | 1.57E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92409.t1 | MTR_8g038220 | 98.089 | 314 | 6 | 0 | 1 | 314 | 1 | 314 | 0.0 | 629 |
| MS.gene92409.t1 | MTR_8g038220 | 96.815 | 314 | 9 | 1 | 1 | 314 | 1 | 313 | 0.0 | 616 |
| MS.gene92409.t1 | MTR_3g018780 | 78.344 | 314 | 68 | 0 | 1 | 314 | 1 | 314 | 0.0 | 521 |
| MS.gene92409.t1 | MTR_8g038180 | 78.205 | 312 | 68 | 0 | 1 | 312 | 1 | 312 | 0.0 | 509 |
| MS.gene92409.t1 | MTR_8g038210 | 75.796 | 314 | 75 | 1 | 1 | 314 | 1 | 313 | 8.91e-175 | 486 |
| MS.gene92409.t1 | MTR_8g038210 | 73.885 | 314 | 81 | 1 | 1 | 314 | 1 | 313 | 9.86e-171 | 476 |
| MS.gene92409.t1 | MTR_3g018790 | 70.701 | 314 | 92 | 0 | 1 | 314 | 1 | 314 | 1.93e-169 | 473 |
| MS.gene92409.t1 | MTR_3g018790 | 69.421 | 242 | 74 | 0 | 73 | 314 | 19 | 260 | 1.68e-125 | 359 |
| MS.gene92409.t1 | MTR_2g031980 | 48.243 | 313 | 162 | 0 | 1 | 313 | 1 | 313 | 8.94e-109 | 319 |
| MS.gene92409.t1 | MTR_5g063670 | 47.619 | 315 | 164 | 1 | 1 | 314 | 1 | 315 | 6.82e-99 | 294 |
| MS.gene92409.t1 | MTR_0276s0050 | 49.524 | 315 | 158 | 1 | 1 | 314 | 1 | 315 | 7.61e-99 | 294 |
| MS.gene92409.t1 | MTR_3g018920 | 61.538 | 208 | 48 | 1 | 1 | 208 | 1 | 176 | 1.32e-86 | 258 |
| MS.gene92409.t1 | MTR_8g038150 | 41.456 | 316 | 181 | 2 | 1 | 312 | 1 | 316 | 1.93e-79 | 244 |
| MS.gene92409.t1 | MTR_8g107640 | 39.297 | 313 | 187 | 3 | 1 | 311 | 1 | 312 | 8.37e-72 | 224 |
| MS.gene92409.t1 | MTR_6g071605 | 38.170 | 317 | 191 | 4 | 1 | 314 | 1 | 315 | 5.76e-67 | 212 |
| MS.gene92409.t1 | MTR_6g071615 | 39.117 | 317 | 188 | 4 | 1 | 314 | 1 | 315 | 6.25e-66 | 209 |
| MS.gene92409.t1 | MTR_1g033560 | 36.102 | 313 | 197 | 3 | 1 | 311 | 1 | 312 | 1.25e-62 | 201 |
| MS.gene92409.t1 | MTR_1g112520 | 36.392 | 316 | 196 | 4 | 1 | 313 | 1 | 314 | 3.71e-61 | 197 |
| MS.gene92409.t1 | MTR_8g038170 | 38.019 | 313 | 169 | 6 | 17 | 312 | 8 | 312 | 4.33e-57 | 187 |
| MS.gene92409.t1 | MTR_8g038170 | 38.019 | 313 | 169 | 6 | 17 | 312 | 8 | 312 | 4.33e-57 | 187 |
| MS.gene92409.t1 | MTR_6g071595 | 35.786 | 299 | 188 | 3 | 15 | 311 | 16 | 312 | 2.76e-56 | 185 |
| MS.gene92409.t1 | MTR_3g018925 | 71.134 | 97 | 28 | 0 | 218 | 314 | 13 | 109 | 9.05e-43 | 143 |
| MS.gene92409.t1 | MTR_6g071595 | 32.068 | 237 | 157 | 3 | 15 | 249 | 16 | 250 | 1.78e-38 | 137 |
| MS.gene92409.t1 | MTR_6g028030 | 27.244 | 312 | 215 | 5 | 9 | 312 | 3 | 310 | 3.96e-34 | 127 |
| MS.gene92409.t1 | MTR_8g038090 | 47.222 | 72 | 33 | 2 | 244 | 312 | 22 | 91 | 2.24e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92409.t1 | AT5G12380 | 55.627 | 311 | 138 | 0 | 1 | 311 | 1 | 311 | 1.92e-128 | 369 |
| MS.gene92409.t1 | AT1G35720 | 51.266 | 316 | 152 | 2 | 1 | 314 | 1 | 316 | 1.35e-106 | 313 |
| MS.gene92409.t1 | AT5G10220 | 52.229 | 314 | 147 | 2 | 1 | 311 | 1 | 314 | 1.52e-105 | 311 |
| MS.gene92409.t1 | AT5G10230 | 50.962 | 312 | 152 | 1 | 1 | 311 | 1 | 312 | 1.77e-104 | 308 |
| MS.gene92409.t1 | AT5G65020 | 49.051 | 316 | 159 | 2 | 1 | 314 | 1 | 316 | 9.57e-101 | 299 |
| MS.gene92409.t1 | AT5G65020 | 49.141 | 291 | 147 | 1 | 25 | 314 | 11 | 301 | 7.31e-95 | 283 |
| MS.gene92409.t1 | AT2G38760 | 41.250 | 320 | 181 | 3 | 1 | 313 | 1 | 320 | 3.60e-80 | 246 |
| MS.gene92409.t1 | AT1G68090 | 34.505 | 313 | 203 | 2 | 1 | 311 | 1 | 313 | 4.19e-58 | 189 |
| MS.gene92409.t1 | AT2G38750 | 35.065 | 308 | 175 | 7 | 25 | 314 | 19 | 319 | 1.05e-47 | 162 |
| MS.gene92409.t1 | AT2G38750 | 35.065 | 308 | 175 | 7 | 25 | 314 | 2 | 302 | 1.30e-47 | 162 |
| MS.gene92409.t1 | AT1G68090 | 32.400 | 250 | 167 | 2 | 1 | 248 | 1 | 250 | 7.35e-41 | 143 |
Find 65 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAGTGTTATCACAATTT+TGG | 0.141323 | 8.4:+60209244 | MS.gene92409:CDS |
| TGCTGATCGCGATGCTGTTT+TGG | 0.280081 | 8.4:+60209523 | MS.gene92409:CDS |
| GATGTCCTTCAGATCTTTCT+CGG | 0.304640 | 8.4:-60210419 | None:intergenic |
| TGCTGAGATCAATCCAAAAT+TGG | 0.314053 | 8.4:+60209871 | MS.gene92409:CDS |
| AAGTTCATCCTTACCTTGTT+GGG | 0.316314 | 8.4:+60210517 | MS.gene92409:CDS |
| CTCATTGCCAACACTTCTTC+CGG | 0.352051 | 8.4:-60209614 | None:intergenic |
| AGTGGTTGATGGGAGCAATA+AGG | 0.354406 | 8.4:-60208962 | None:intergenic |
| GGATTCTAATGGCTTCTTCA+TGG | 0.356639 | 8.4:-60209946 | None:intergenic |
| ACAAATCAGAAAATCTTATC+AGG | 0.360843 | 8.4:+60209292 | MS.gene92409:CDS |
| AGCAGCTAAATCTTCTTCTA+AGG | 0.364972 | 8.4:-60209666 | None:intergenic |
| TTGGCAGCTGTTGGTTGGAT+TGG | 0.381700 | 8.4:+60209826 | MS.gene92409:intron |
| TTCTGCGCGGTGCGCTGAAA+AGG | 0.395157 | 8.4:+60210350 | MS.gene92409:CDS |
| GCAGTGGCAAAGGAAATTTC+AGG | 0.403300 | 8.4:+60210484 | MS.gene92409:CDS |
| GAAGTTCATCCTTACCTTGT+TGG | 0.411489 | 8.4:+60210516 | MS.gene92409:CDS |
| CACCAGAGAGTTCAGATTCA+AGG | 0.434862 | 8.4:-60209343 | None:intergenic |
| GAGTCTTGCTCCTTGTAGTA+AGG | 0.451508 | 8.4:-60209967 | None:intergenic |
| TGAACTCTCTGGTGACTTTG+AGG | 0.452193 | 8.4:+60209352 | MS.gene92409:CDS |
| CCTTGTAGTAAGGATTCTAA+TGG | 0.455797 | 8.4:-60209957 | None:intergenic |
| GTGGTTGATGGGAGCAATAA+GGG | 0.464564 | 8.4:-60208961 | None:intergenic |
| CGCGGTGCGCTGAAAAGGGT+TGG | 0.481256 | 8.4:+60210355 | MS.gene92409:CDS |
| CGCCTTGAATCTGAACTCTC+TGG | 0.485385 | 8.4:+60209341 | MS.gene92409:CDS |
| TGTTCTTGGCAGCTGTTGGT+TGG | 0.490794 | 8.4:+60209821 | MS.gene92409:intron |
| AATTGTTTCTGTTCTTTCAC+CGG | 0.496681 | 8.4:+60209595 | MS.gene92409:CDS |
| TGCAACAGCAGAGTGGTTGA+TGG | 0.498104 | 8.4:-60208973 | None:intergenic |
| GTTCAGATTCAAGGCGTTTG+AGG | 0.508007 | 8.4:-60209334 | None:intergenic |
| CTTGCTTCCCCAACAAGGTA+AGG | 0.508755 | 8.4:-60210525 | None:intergenic |
| AAAACAGCATCGCGATCAGC+AGG | 0.508816 | 8.4:-60209521 | None:intergenic |
| AGCTGTGTACCGTTGGATGC+TGG | 0.510810 | 8.4:+60209496 | MS.gene92409:CDS |
| GGCGTTTGAGGATATCCTCT+TGG | 0.516904 | 8.4:-60209322 | None:intergenic |
| TCTGCGCGGTGCGCTGAAAA+GGG | 0.523526 | 8.4:+60210351 | MS.gene92409:CDS |
| TTTGGCTAATGTAGCCATCA+AGG | 0.526066 | 8.4:+60209541 | MS.gene92409:CDS |
| CCTTGAGGATGCAGTGGCAA+AGG | 0.527077 | 8.4:+60210474 | MS.gene92409:CDS |
| TACCACCGGTCATCTTCGCC+AGG | 0.531070 | 8.4:+60209691 | MS.gene92409:CDS |
| CCATAAGAAGTACTATGAAA+AGG | 0.532592 | 8.4:+60210206 | MS.gene92409:CDS |
| CCTTTGCCACTGCATCCTCA+AGG | 0.543737 | 8.4:-60210474 | None:intergenic |
| ATCAGAGAGCTGTGTACCGT+TGG | 0.546500 | 8.4:+60209489 | MS.gene92409:intron |
| CCATTAGAATCCTTACTACA+AGG | 0.546524 | 8.4:+60209957 | MS.gene92409:CDS |
| ATTTGCCTGGCGAAGATGAC+CGG | 0.548239 | 8.4:-60209696 | None:intergenic |
| TATTCTTCATGAATCTATCA+AGG | 0.552458 | 8.4:+60209910 | MS.gene92409:CDS |
| GCAACAGCAGAGTGGTTGAT+GGG | 0.553777 | 8.4:-60208972 | None:intergenic |
| TTGGTGAGCTCATTTAGATA+CGG | 0.558424 | 8.4:+60209845 | MS.gene92409:CDS |
| AGGGTTGGAACTGATGAAGA+TGG | 0.558767 | 8.4:+60210370 | MS.gene92409:CDS |
| TCCTTGATTACAGAAACTGT+TGG | 0.563285 | 8.4:+60210125 | MS.gene92409:intron |
| CTTCTAAGGAATGCTTGTAA+CGG | 0.568638 | 8.4:-60209652 | None:intergenic |
| TCTTTCACCGGAAGAAGTGT+TGG | 0.574469 | 8.4:+60209607 | MS.gene92409:CDS |
| GCTAATGTAGCCATCAAGGA+TGG | 0.577877 | 8.4:+60209545 | MS.gene92409:CDS |
| AAGGAGCAAGACTCAGCTGT+TGG | 0.579770 | 8.4:+60209976 | MS.gene92409:CDS |
| TGCCATGGTCATCTCTGTAA+CGG | 0.597289 | 8.4:-60210009 | None:intergenic |
| AGTTCATCCTTACCTTGTTG+GGG | 0.599506 | 8.4:+60210518 | MS.gene92409:CDS |
| TCAATCTTGCTTCCCCAACA+AGG | 0.603464 | 8.4:-60210530 | None:intergenic |
| AAGAGCCGAGAAAGATCTGA+AGG | 0.610424 | 8.4:+60210414 | MS.gene92409:CDS |
| GATTTAGCTGCTCATACCAC+CGG | 0.611436 | 8.4:+60209677 | MS.gene92409:CDS |
| GAGAAACAGTGTTCACCTTG+AGG | 0.617004 | 8.4:+60210459 | MS.gene92409:CDS |
| CCTTGGTTATGGAAATGCCA+TGG | 0.623946 | 8.4:-60210024 | None:intergenic |
| TGTTCACCTTGAGGATGCAG+TGG | 0.633928 | 8.4:+60210468 | MS.gene92409:CDS |
| CAGCAGGTTCCAGCATCCAA+CGG | 0.637752 | 8.4:-60209505 | None:intergenic |
| TTATCAGGAAATTTACCAAG+AGG | 0.646965 | 8.4:+60209307 | MS.gene92409:CDS |
| CTGCATCTGCAACAGCAGAG+TGG | 0.660256 | 8.4:-60208980 | None:intergenic |
| GTGAGCTCATTTAGATACGG+CGG | 0.666235 | 8.4:+60209848 | MS.gene92409:CDS |
| TGCCTGGCGAAGATGACCGG+TGG | 0.669448 | 8.4:-60209693 | None:intergenic |
| TGCATCTGATGACTTTCACA+AGG | 0.672519 | 8.4:+60210152 | MS.gene92409:CDS |
| CCATGGCATTTCCATAACCA+AGG | 0.680029 | 8.4:+60210024 | MS.gene92409:CDS |
| AAACAATTTCAATAATAACA+TGG | 0.685647 | 8.4:-60209580 | None:intergenic |
| CATGATGTTTAGATTCTGCG+CGG | 0.707946 | 8.4:+60210337 | MS.gene92409:intron |
| AACCGTTACAGAGATGACCA+TGG | 0.726336 | 8.4:+60210007 | MS.gene92409:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAAAAAAAATAATACA+TGG | + | chr8.4:60209095-60209114 | MS.gene92409:intron | 10.0% |
| !! | AAACAATTTCAATAATAACA+TGG | - | chr8.4:60209583-60209602 | None:intergenic | 15.0% |
| !! | AAAGTGAAAACAAAAATAAA+TGG | - | chr8.4:60210075-60210094 | None:intergenic | 15.0% |
| !! | AATAGGTTACATAAAAAAAA+AGG | - | chr8.4:60209421-60209440 | None:intergenic | 15.0% |
| !! | AGGATTAAAATAAACAAATT+AGG | + | chr8.4:60209747-60209766 | MS.gene92409:intron | 15.0% |
| !!! | TTTGTTTATTTTAATCCTTA+AGG | - | chr8.4:60209745-60209764 | None:intergenic | 15.0% |
| !! | ACATAAAAATATTGATGTTG+CGG | + | chr8.4:60209137-60209156 | MS.gene92409:intron | 20.0% |
| !!! | AAAAAGGTATATGAAATTGT+TGG | - | chr8.4:60209405-60209424 | None:intergenic | 20.0% |
| ! | AATAATACATGGTAACATTG+TGG | + | chr8.4:60209106-60209125 | MS.gene92409:intron | 25.0% |
| ! | ACAAATCAGAAAATCTTATC+AGG | + | chr8.4:60209292-60209311 | MS.gene92409:CDS | 25.0% |
| ! | CATGGTAAGAAAAAAAATCA+AGG | - | chr8.4:60210321-60210340 | None:intergenic | 25.0% |
| ! | TATAAGAATGTTTGTGAACA+TGG | - | chr8.4:60210102-60210121 | None:intergenic | 25.0% |
| ! | TATTCTTCATGAATCTATCA+AGG | + | chr8.4:60209910-60209929 | MS.gene92409:CDS | 25.0% |
| !! | TCATTAGCTTAAGACATAAT+AGG | - | chr8.4:60209438-60209457 | None:intergenic | 25.0% |
| !! | TGAATGATTTTGAATTGTGT+AGG | + | chr8.4:60209206-60209225 | MS.gene92409:intron | 25.0% |
| !!! | AAGAGTGTTATCACAATTTT+GGG | + | chr8.4:60209245-60209264 | MS.gene92409:CDS | 25.0% |
| !!! | GATTATGTTTTGTTTGTTCT+TGG | + | chr8.4:60209807-60209826 | MS.gene92409:intron | 25.0% |
| !!! | TCAATATTTTTATGTGTCTG+AGG | - | chr8.4:60209132-60209151 | None:intergenic | 25.0% |
| GAATCTATCAAGGAGAAAAA+AGG | + | chr8.4:60209920-60209939 | MS.gene92409:CDS | 30.0% | |
| TTATCAGGAAATTTACCAAG+AGG | + | chr8.4:60209307-60209326 | MS.gene92409:CDS | 30.0% | |
| ! | AGAAGATTTAATGATTTGCC+TGG | - | chr8.4:60209712-60209731 | None:intergenic | 30.0% |
| ! | ATTTTGAATTGTGTAGGATG+GGG | + | chr8.4:60209212-60209231 | MS.gene92409:intron | 30.0% |
| ! | CCTTTTCATAGTACTTCTTA+TGG | - | chr8.4:60210209-60210228 | None:intergenic | 30.0% |
| ! | CTTAGCATTTTCATGTTAGT+CGG | + | chr8.4:60209775-60209794 | MS.gene92409:intron | 30.0% |
| ! | GATTTTGAATTGTGTAGGAT+GGG | + | chr8.4:60209211-60209230 | MS.gene92409:intron | 30.0% |
| ! | TCTGACTTTCAATTTGTTCA+AGG | + | chr8.4:60210239-60210258 | MS.gene92409:intron | 30.0% |
| ! | TGATTTTGAATTGTGTAGGA+TGG | + | chr8.4:60209210-60209229 | MS.gene92409:intron | 30.0% |
| ! | TTACAAGTTTTTGTCTGAGA+CGG | - | chr8.4:60210277-60210296 | None:intergenic | 30.0% |
| !! | AATTGTTTCTGTTCTTTCAC+CGG | + | chr8.4:60209595-60209614 | MS.gene92409:CDS | 30.0% |
| !! | AGTCGATATTTTGAATAACG+TGG | + | chr8.4:60209457-60209476 | MS.gene92409:intron | 30.0% |
| !! | CCATAAGAAGTACTATGAAA+AGG | + | chr8.4:60210206-60210225 | MS.gene92409:CDS | 30.0% |
| !!! | ACTTTTTTTCACCTTGGTTA+TGG | - | chr8.4:60210038-60210057 | None:intergenic | 30.0% |
| !!! | GAAGAGTGTTATCACAATTT+TGG | + | chr8.4:60209244-60209263 | MS.gene92409:CDS | 30.0% |
| AAGTTCATCCTTACCTTGTT+GGG | + | chr8.4:60210517-60210536 | MS.gene92409:CDS | 35.0% | |
| AGCAGCTAAATCTTCTTCTA+AGG | - | chr8.4:60209669-60209688 | None:intergenic | 35.0% | |
| CCATTAGAATCCTTACTACA+AGG | + | chr8.4:60209957-60209976 | MS.gene92409:CDS | 35.0% | |
| CCTTGTAGTAAGGATTCTAA+TGG | - | chr8.4:60209960-60209979 | None:intergenic | 35.0% | |
| GCTCTTCAAAAAGCTTTCAA+AGG | + | chr8.4:60209005-60209024 | MS.gene92409:CDS | 35.0% | |
| TCAGCGATTATAACCAAGAT+TGG | - | chr8.4:60209178-60209197 | None:intergenic | 35.0% | |
| TCCAACAGTTTCTGTAATCA+AGG | - | chr8.4:60210129-60210148 | None:intergenic | 35.0% | |
| TCCTTGATTACAGAAACTGT+TGG | + | chr8.4:60210125-60210144 | MS.gene92409:intron | 35.0% | |
| TGCTGAGATCAATCCAAAAT+TGG | + | chr8.4:60209871-60209890 | MS.gene92409:CDS | 35.0% | |
| TTGGTGAGCTCATTTAGATA+CGG | + | chr8.4:60209845-60209864 | MS.gene92409:CDS | 35.0% | |
| ! | CTTCTAAGGAATGCTTGTAA+CGG | - | chr8.4:60209655-60209674 | None:intergenic | 35.0% |
| ! | CTTCTACTTTCTAGTCCTTA+AGG | + | chr8.4:60209727-60209746 | MS.gene92409:intron | 35.0% |
| ! | GCTTCAGTTTTTGCCAATTT+TGG | - | chr8.4:60209887-60209906 | None:intergenic | 35.0% |
| ! | TTTTGAATTGTGTAGGATGG+GGG | + | chr8.4:60209213-60209232 | MS.gene92409:intron | 35.0% |
| !!! | TGAGCTACTTTTTTTCACCT+TGG | - | chr8.4:60210044-60210063 | None:intergenic | 35.0% |
| AGTTCATCCTTACCTTGTTG+GGG | + | chr8.4:60210518-60210537 | MS.gene92409:CDS | 40.0% | |
| CAAATCGCATATGCCAATCT+TGG | + | chr8.4:60209162-60209181 | MS.gene92409:intron | 40.0% | |
| CAAGATTGGCATATGCGATT+TGG | - | chr8.4:60209164-60209183 | None:intergenic | 40.0% | |
| CATGATGTTTAGATTCTGCG+CGG | + | chr8.4:60210337-60210356 | MS.gene92409:intron | 40.0% | |
| GAAGTTCATCCTTACCTTGT+TGG | + | chr8.4:60210516-60210535 | MS.gene92409:CDS | 40.0% | |
| GATGTCCTTCAGATCTTTCT+CGG | - | chr8.4:60210422-60210441 | None:intergenic | 40.0% | |
| GGATTCTAATGGCTTCTTCA+TGG | - | chr8.4:60209949-60209968 | None:intergenic | 40.0% | |
| TGCATCTGATGACTTTCACA+AGG | + | chr8.4:60210152-60210171 | MS.gene92409:CDS | 40.0% | |
| TTTGGCTAATGTAGCCATCA+AGG | + | chr8.4:60209541-60209560 | MS.gene92409:CDS | 40.0% | |
| ! | ACTTTTGCTTCCATCCTTGA+TGG | - | chr8.4:60209558-60209577 | None:intergenic | 40.0% |
| AACCGTTACAGAGATGACCA+TGG | + | chr8.4:60210007-60210026 | MS.gene92409:CDS | 45.0% | |
| AAGAGCCGAGAAAGATCTGA+AGG | + | chr8.4:60210414-60210433 | MS.gene92409:CDS | 45.0% | |
| AGGGTTGGAACTGATGAAGA+TGG | + | chr8.4:60210370-60210389 | MS.gene92409:CDS | 45.0% | |
| CACCAGAGAGTTCAGATTCA+AGG | - | chr8.4:60209346-60209365 | None:intergenic | 45.0% | |
| CCATGGCATTTCCATAACCA+AGG | + | chr8.4:60210024-60210043 | MS.gene92409:CDS | 45.0% | |
| CCTTGGTTATGGAAATGCCA+TGG | - | chr8.4:60210027-60210046 | None:intergenic | 45.0% | |
| CGCGCAGAATCTAAACATCA+TGG | - | chr8.4:60210339-60210358 | None:intergenic | 45.0% | |
| CTCATTGCCAACACTTCTTC+CGG | - | chr8.4:60209617-60209636 | None:intergenic | 45.0% | |
| GAGAAACAGTGTTCACCTTG+AGG | + | chr8.4:60210459-60210478 | MS.gene92409:CDS | 45.0% | |
| GAGTCTTGCTCCTTGTAGTA+AGG | - | chr8.4:60209970-60209989 | None:intergenic | 45.0% | |
| GATTTAGCTGCTCATACCAC+CGG | + | chr8.4:60209677-60209696 | MS.gene92409:CDS | 45.0% | |
| GCAGTGGCAAAGGAAATTTC+AGG | + | chr8.4:60210484-60210503 | MS.gene92409:CDS | 45.0% | |
| GCTAATGTAGCCATCAAGGA+TGG | + | chr8.4:60209545-60209564 | MS.gene92409:CDS | 45.0% | |
| GTGAGCTCATTTAGATACGG+CGG | + | chr8.4:60209848-60209867 | MS.gene92409:CDS | 45.0% | |
| TCAATCTTGCTTCCCCAACA+AGG | - | chr8.4:60210533-60210552 | None:intergenic | 45.0% | |
| TGAACTCTCTGGTGACTTTG+AGG | + | chr8.4:60209352-60209371 | MS.gene92409:CDS | 45.0% | |
| TGCCATGGTCATCTCTGTAA+CGG | - | chr8.4:60210012-60210031 | None:intergenic | 45.0% | |
| TGTTTGTTCTTGGCAGCTGT+TGG | + | chr8.4:60209817-60209836 | MS.gene92409:intron | 45.0% | |
| ! | GTTCAGATTCAAGGCGTTTG+AGG | - | chr8.4:60209337-60209356 | None:intergenic | 45.0% |
| ! | TCTTTCACCGGAAGAAGTGT+TGG | + | chr8.4:60209607-60209626 | MS.gene92409:CDS | 45.0% |
| !! | AGTGGTTGATGGGAGCAATA+AGG | - | chr8.4:60208965-60208984 | None:intergenic | 45.0% |
| !! | GTGGTTGATGGGAGCAATAA+GGG | - | chr8.4:60208964-60208983 | None:intergenic | 45.0% |
| AAAACAGCATCGCGATCAGC+AGG | - | chr8.4:60209524-60209543 | None:intergenic | 50.0% | |
| AAGGAGCAAGACTCAGCTGT+TGG | + | chr8.4:60209976-60209995 | MS.gene92409:CDS | 50.0% | |
| ATCAGAGAGCTGTGTACCGT+TGG | + | chr8.4:60209489-60209508 | MS.gene92409:intron | 50.0% | |
| ATTTGCCTGGCGAAGATGAC+CGG | - | chr8.4:60209699-60209718 | None:intergenic | 50.0% | |
| CGCCTTGAATCTGAACTCTC+TGG | + | chr8.4:60209341-60209360 | MS.gene92409:CDS | 50.0% | |
| CTTGCTTCCCCAACAAGGTA+AGG | - | chr8.4:60210528-60210547 | None:intergenic | 50.0% | |
| GCAACAGCAGAGTGGTTGAT+GGG | - | chr8.4:60208975-60208994 | None:intergenic | 50.0% | |
| GGCGTTTGAGGATATCCTCT+TGG | - | chr8.4:60209325-60209344 | None:intergenic | 50.0% | |
| TGCAACAGCAGAGTGGTTGA+TGG | - | chr8.4:60208976-60208995 | None:intergenic | 50.0% | |
| TGTTCACCTTGAGGATGCAG+TGG | + | chr8.4:60210468-60210487 | MS.gene92409:CDS | 50.0% | |
| TGTTCTTGGCAGCTGTTGGT+TGG | + | chr8.4:60209821-60209840 | MS.gene92409:intron | 50.0% | |
| ! | TTGGCAGCTGTTGGTTGGAT+TGG | + | chr8.4:60209826-60209845 | MS.gene92409:intron | 50.0% |
| !! | TGCTGATCGCGATGCTGTTT+TGG | + | chr8.4:60209523-60209542 | MS.gene92409:CDS | 50.0% |
| AGCTGTGTACCGTTGGATGC+TGG | + | chr8.4:60209496-60209515 | MS.gene92409:CDS | 55.0% | |
| CAGCAGGTTCCAGCATCCAA+CGG | - | chr8.4:60209508-60209527 | None:intergenic | 55.0% | |
| CCTTGAGGATGCAGTGGCAA+AGG | + | chr8.4:60210474-60210493 | MS.gene92409:CDS | 55.0% | |
| CCTTTGCCACTGCATCCTCA+AGG | - | chr8.4:60210477-60210496 | None:intergenic | 55.0% | |
| CTGCATCTGCAACAGCAGAG+TGG | - | chr8.4:60208983-60209002 | None:intergenic | 55.0% | |
| TACCACCGGTCATCTTCGCC+AGG | + | chr8.4:60209691-60209710 | MS.gene92409:CDS | 60.0% | |
| TCTGCGCGGTGCGCTGAAAA+GGG | + | chr8.4:60210351-60210370 | MS.gene92409:CDS | 60.0% | |
| TTCTGCGCGGTGCGCTGAAA+AGG | + | chr8.4:60210350-60210369 | MS.gene92409:CDS | 60.0% | |
| CGCGGTGCGCTGAAAAGGGT+TGG | + | chr8.4:60210355-60210374 | MS.gene92409:CDS | 65.0% | |
| TGCCTGGCGAAGATGACCGG+TGG | - | chr8.4:60209696-60209715 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 60208954 | 60210552 | 60208954 | ID=MS.gene92409 |
| chr8.4 | mRNA | 60208954 | 60210552 | 60208954 | ID=MS.gene92409.t1;Parent=MS.gene92409 |
| chr8.4 | exon | 60208954 | 60209026 | 60208954 | ID=MS.gene92409.t1.exon1;Parent=MS.gene92409.t1 |
| chr8.4 | CDS | 60208954 | 60209026 | 60208954 | ID=cds.MS.gene92409.t1;Parent=MS.gene92409.t1 |
| chr8.4 | exon | 60209228 | 60209373 | 60209228 | ID=MS.gene92409.t1.exon2;Parent=MS.gene92409.t1 |
| chr8.4 | CDS | 60209228 | 60209373 | 60209228 | ID=cds.MS.gene92409.t1;Parent=MS.gene92409.t1 |
| chr8.4 | exon | 60209494 | 60209712 | 60209494 | ID=MS.gene92409.t1.exon3;Parent=MS.gene92409.t1 |
| chr8.4 | CDS | 60209494 | 60209712 | 60209494 | ID=cds.MS.gene92409.t1;Parent=MS.gene92409.t1 |
| chr8.4 | exon | 60209833 | 60210045 | 60209833 | ID=MS.gene92409.t1.exon4;Parent=MS.gene92409.t1 |
| chr8.4 | CDS | 60209833 | 60210045 | 60209833 | ID=cds.MS.gene92409.t1;Parent=MS.gene92409.t1 |
| chr8.4 | exon | 60210138 | 60210227 | 60210138 | ID=MS.gene92409.t1.exon5;Parent=MS.gene92409.t1 |
| chr8.4 | CDS | 60210138 | 60210227 | 60210138 | ID=cds.MS.gene92409.t1;Parent=MS.gene92409.t1 |
| chr8.4 | exon | 60210349 | 60210552 | 60210349 | ID=MS.gene92409.t1.exon6;Parent=MS.gene92409.t1 |
| chr8.4 | CDS | 60210349 | 60210552 | 60210349 | ID=cds.MS.gene92409.t1;Parent=MS.gene92409.t1 |
| Gene Sequence |
| Protein sequence |
