Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056200.t1 | XP_003627780.1 | 98.4 | 314 | 5 | 0 | 1 | 314 | 1 | 314 | 3.60E-170 | 607.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056200.t1 | P51074 | 70.7 | 314 | 92 | 0 | 1 | 314 | 1 | 314 | 4.7e-126 | 452.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056200.t1 | G7LF88 | 98.4 | 314 | 5 | 0 | 1 | 314 | 1 | 314 | 2.6e-170 | 607.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene056200 | -0.809036 | 2.31E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene056200 | -0.82502 | 5.89E-54 | -1.69E-46 |
| MS.gene056198 | MS.gene056200 | 0.853852 | 1.82E-61 | -1.69E-46 |
| MS.gene056200 | MS.gene056504 | -0.802824 | 4.67E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene058382 | 0.82482 | 6.56E-54 | -1.69E-46 |
| MS.gene056200 | MS.gene061777 | 0.812544 | 4.02E-51 | -1.69E-46 |
| MS.gene056200 | MS.gene062121 | 0.822717 | 2.04E-53 | -1.69E-46 |
| MS.gene056200 | MS.gene063410 | -0.804429 | 2.17E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene064707 | -0.808786 | 2.61E-50 | -1.69E-46 |
| MS.gene056200 | MS.gene074380 | -0.806779 | 6.97E-50 | -1.69E-46 |
| MS.gene056200 | MS.gene09795 | -0.802484 | 5.49E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene09797 | -0.809683 | 1.68E-50 | -1.69E-46 |
| MS.gene056200 | MS.gene22903 | -0.819071 | 1.41E-52 | -1.69E-46 |
| MS.gene056200 | MS.gene22911 | -0.816837 | 4.50E-52 | -1.69E-46 |
| MS.gene056200 | MS.gene30217 | 0.818117 | 2.32E-52 | -1.69E-46 |
| MS.gene056200 | MS.gene30456 | 0.806315 | 8.73E-50 | -1.69E-46 |
| MS.gene056200 | MS.gene41234 | -0.80539 | 1.37E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene45779 | 0.965316 | 1.90E-124 | -1.69E-46 |
| MS.gene056200 | MS.gene47902 | 0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene50620 | 0.803427 | 3.50E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene51612 | 0.829105 | 6.20E-55 | -1.69E-46 |
| MS.gene056200 | MS.gene52976 | -0.805431 | 1.34E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene57291 | 0.812959 | 3.26E-51 | -1.69E-46 |
| MS.gene056200 | MS.gene67221 | 0.808318 | 3.29E-50 | -1.69E-46 |
| MS.gene056200 | MS.gene69450 | -0.807425 | 5.09E-50 | -1.69E-46 |
| MS.gene056200 | MS.gene70809 | -0.802663 | 5.04E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene73910 | -0.819335 | 1.23E-52 | -1.69E-46 |
| MS.gene056200 | MS.gene74352 | 0.823783 | 1.15E-53 | -1.69E-46 |
| MS.gene056200 | MS.gene77768 | 0.803331 | 3.67E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene77774 | 0.80475 | 1.86E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene79178 | 0.810985 | 8.78E-51 | -1.69E-46 |
| MS.gene056200 | MS.gene80239 | -0.800286 | 1.55E-48 | -1.69E-46 |
| MS.gene056200 | MS.gene92409 | 0.822227 | 2.65E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056200.t1 | MTR_8g038220 | 98.408 | 314 | 5 | 0 | 1 | 314 | 1 | 314 | 0.0 | 629 |
| MS.gene056200.t1 | MTR_8g038220 | 97.134 | 314 | 8 | 1 | 1 | 314 | 1 | 313 | 0.0 | 617 |
| MS.gene056200.t1 | MTR_3g018780 | 78.025 | 314 | 69 | 0 | 1 | 314 | 1 | 314 | 0.0 | 520 |
| MS.gene056200.t1 | MTR_8g038180 | 78.526 | 312 | 67 | 0 | 1 | 312 | 1 | 312 | 0.0 | 509 |
| MS.gene056200.t1 | MTR_8g038210 | 75.478 | 314 | 76 | 1 | 1 | 314 | 1 | 313 | 1.31e-174 | 486 |
| MS.gene056200.t1 | MTR_8g038210 | 73.567 | 314 | 82 | 1 | 1 | 314 | 1 | 313 | 1.78e-170 | 475 |
| MS.gene056200.t1 | MTR_3g018790 | 70.382 | 314 | 93 | 0 | 1 | 314 | 1 | 314 | 3.71e-169 | 472 |
| MS.gene056200.t1 | MTR_3g018790 | 69.008 | 242 | 75 | 0 | 73 | 314 | 19 | 260 | 3.03e-125 | 358 |
| MS.gene056200.t1 | MTR_2g031980 | 47.923 | 313 | 163 | 0 | 1 | 313 | 1 | 313 | 1.44e-108 | 318 |
| MS.gene056200.t1 | MTR_5g063670 | 47.937 | 315 | 163 | 1 | 1 | 314 | 1 | 315 | 4.36e-99 | 294 |
| MS.gene056200.t1 | MTR_0276s0050 | 49.841 | 315 | 157 | 1 | 1 | 314 | 1 | 315 | 4.81e-99 | 294 |
| MS.gene056200.t1 | MTR_3g018920 | 61.538 | 208 | 48 | 1 | 1 | 208 | 1 | 176 | 1.38e-86 | 258 |
| MS.gene056200.t1 | MTR_8g038150 | 41.139 | 316 | 182 | 2 | 1 | 312 | 1 | 316 | 3.46e-79 | 244 |
| MS.gene056200.t1 | MTR_8g107640 | 38.978 | 313 | 188 | 3 | 1 | 311 | 1 | 312 | 1.35e-71 | 224 |
| MS.gene056200.t1 | MTR_6g071605 | 37.855 | 317 | 192 | 4 | 1 | 314 | 1 | 315 | 9.46e-67 | 212 |
| MS.gene056200.t1 | MTR_6g071615 | 38.801 | 317 | 189 | 4 | 1 | 314 | 1 | 315 | 9.94e-66 | 209 |
| MS.gene056200.t1 | MTR_1g033560 | 35.783 | 313 | 198 | 3 | 1 | 311 | 1 | 312 | 2.31e-62 | 200 |
| MS.gene056200.t1 | MTR_1g112520 | 36.076 | 316 | 197 | 4 | 1 | 313 | 1 | 314 | 6.56e-61 | 197 |
| MS.gene056200.t1 | MTR_8g038170 | 37.700 | 313 | 170 | 6 | 17 | 312 | 8 | 312 | 7.18e-57 | 186 |
| MS.gene056200.t1 | MTR_8g038170 | 37.700 | 313 | 170 | 6 | 17 | 312 | 8 | 312 | 7.18e-57 | 186 |
| MS.gene056200.t1 | MTR_6g071595 | 35.452 | 299 | 189 | 3 | 15 | 311 | 16 | 312 | 4.98e-56 | 184 |
| MS.gene056200.t1 | MTR_3g018925 | 70.103 | 97 | 29 | 0 | 218 | 314 | 13 | 109 | 1.58e-42 | 142 |
| MS.gene056200.t1 | MTR_6g071595 | 32.068 | 237 | 157 | 3 | 15 | 249 | 16 | 250 | 1.53e-38 | 137 |
| MS.gene056200.t1 | MTR_6g028030 | 27.244 | 312 | 215 | 5 | 9 | 312 | 3 | 310 | 4.92e-34 | 127 |
| MS.gene056200.t1 | MTR_8g038090 | 45.833 | 72 | 34 | 2 | 244 | 312 | 22 | 91 | 3.40e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056200.t1 | AT5G12380 | 55.305 | 311 | 139 | 0 | 1 | 311 | 1 | 311 | 3.42e-128 | 368 |
| MS.gene056200.t1 | AT1G35720 | 51.582 | 316 | 151 | 2 | 1 | 314 | 1 | 316 | 8.20e-107 | 314 |
| MS.gene056200.t1 | AT5G10220 | 52.548 | 314 | 146 | 2 | 1 | 311 | 1 | 314 | 8.64e-106 | 311 |
| MS.gene056200.t1 | AT5G10230 | 51.282 | 312 | 151 | 1 | 1 | 311 | 1 | 312 | 1.13e-104 | 308 |
| MS.gene056200.t1 | AT5G65020 | 49.367 | 316 | 158 | 2 | 1 | 314 | 1 | 316 | 5.14e-101 | 299 |
| MS.gene056200.t1 | AT5G65020 | 49.485 | 291 | 146 | 1 | 25 | 314 | 11 | 301 | 4.43e-95 | 284 |
| MS.gene056200.t1 | AT2G38760 | 40.938 | 320 | 182 | 3 | 1 | 313 | 1 | 320 | 5.38e-80 | 246 |
| MS.gene056200.t1 | AT1G68090 | 34.824 | 313 | 202 | 2 | 1 | 311 | 1 | 313 | 2.45e-58 | 190 |
| MS.gene056200.t1 | AT2G38750 | 35.065 | 308 | 175 | 7 | 25 | 314 | 19 | 319 | 1.48e-47 | 162 |
| MS.gene056200.t1 | AT2G38750 | 35.065 | 308 | 175 | 7 | 25 | 314 | 2 | 302 | 1.72e-47 | 162 |
| MS.gene056200.t1 | AT1G68090 | 32.400 | 250 | 167 | 2 | 1 | 248 | 1 | 250 | 7.05e-41 | 143 |
Find 65 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAGTGTTATCACAATTT+TGG | 0.141323 | 8.1:+65563900 | MS.gene056200:CDS |
| CGCTGATCGCGATGCTGTTT+TGG | 0.234414 | 8.1:+65564179 | MS.gene056200:CDS |
| TGCTGAGATCAATCCGAAAT+TGG | 0.313967 | 8.1:+65564565 | MS.gene056200:CDS |
| CTCATTGCCAAGACTTCTTC+AGG | 0.315389 | 8.1:-65564270 | None:intergenic |
| AAGTTCATCCTTACCTTGTT+GGG | 0.316314 | 8.1:+65565209 | MS.gene056200:CDS |
| AGTGGTTGATGGGAGCAATA+AGG | 0.354406 | 8.1:-65563620 | None:intergenic |
| AGCAGCTAGATCTTCTTCTA+AGG | 0.389273 | 8.1:-65564322 | None:intergenic |
| TTCTGCGCGGTGCGCTGAAA+AGG | 0.395157 | 8.1:+65565042 | MS.gene056200:CDS |
| TCCTTGATTACAGAAACTAT+TGG | 0.399533 | 8.1:+65564819 | MS.gene056200:intron |
| GCAGTGGCAAAGGAAATTTC+AGG | 0.403300 | 8.1:+65565176 | MS.gene056200:CDS |
| GAAGTTCATCCTTACCTTGT+TGG | 0.411489 | 8.1:+65565208 | MS.gene056200:CDS |
| TGAACTCTCCGGTGACTTTG+AGG | 0.450478 | 8.1:+65564008 | MS.gene056200:CDS |
| GAGTCTTGCTCCTTGTAGTA+AGG | 0.451508 | 8.1:-65564661 | None:intergenic |
| CCTTGTAGTAAGGATTCTAA+TGG | 0.455797 | 8.1:-65564651 | None:intergenic |
| TCTTTCACCTGAAGAAGTCT+TGG | 0.459113 | 8.1:+65564263 | MS.gene056200:CDS |
| GTGGTTGATGGGAGCAATAA+GGG | 0.464564 | 8.1:-65563619 | None:intergenic |
| CGCGGTGCGCTGAAAAGGGT+TGG | 0.481256 | 8.1:+65565047 | MS.gene056200:CDS |
| CACCGGAGAGTTCAGATTCA+AGG | 0.485731 | 8.1:-65563999 | None:intergenic |
| CAAAACAGCATCGCGATCAG+CGG | 0.494275 | 8.1:-65564178 | None:intergenic |
| TGCAACAGCAGAGTGGTTGA+TGG | 0.498104 | 8.1:-65563631 | None:intergenic |
| GTTCAGATTCAAGGCGTTTG+AGG | 0.508007 | 8.1:-65563990 | None:intergenic |
| AAGGGCTGAGAAAGACTTGA+AGG | 0.508028 | 8.1:+65565106 | MS.gene056200:CDS |
| CTTGCTTCCCCAACAAGGTA+AGG | 0.508755 | 8.1:-65565217 | None:intergenic |
| AGCTGTGTACCGTTGGATGC+TGG | 0.510810 | 8.1:+65564152 | MS.gene056200:CDS |
| GGCGTTTGAGGATATCCTCT+TGG | 0.516904 | 8.1:-65563978 | None:intergenic |
| TCTGCGCGGTGCGCTGAAAA+GGG | 0.523526 | 8.1:+65565043 | MS.gene056200:CDS |
| AAAACAGCATCGCGATCAGC+GGG | 0.526282 | 8.1:-65564177 | None:intergenic |
| CCTTGAGGATGCAGTGGCAA+AGG | 0.527077 | 8.1:+65565166 | MS.gene056200:CDS |
| CGCCTTGAATCTGAACTCTC+CGG | 0.528849 | 8.1:+65563997 | MS.gene056200:CDS |
| CTGGTGAGCTCATTTAGATA+TGG | 0.529789 | 8.1:+65564539 | MS.gene056200:CDS |
| TACCACCGGTCATCTTCGCC+AGG | 0.531070 | 8.1:+65564347 | MS.gene056200:CDS |
| CCATAAGAAGTACTATGAAA+AGG | 0.532592 | 8.1:+65564900 | MS.gene056200:CDS |
| AGGGTTGGAACGGATGAAGA+TGG | 0.541748 | 8.1:+65565062 | MS.gene056200:CDS |
| TGACTCGTGTGGTGGTGACA+AGG | 0.541793 | 8.1:+65565087 | MS.gene056200:CDS |
| CCTTTGCCACTGCATCCTCA+AGG | 0.543737 | 8.1:-65565166 | None:intergenic |
| CCATTAGAATCCTTACTACA+AGG | 0.546524 | 8.1:+65564651 | MS.gene056200:CDS |
| ACTTGCCTGGCGAAGATGAC+CGG | 0.547219 | 8.1:-65564352 | None:intergenic |
| GCAACAGCAGAGTGGTTGAT+GGG | 0.553777 | 8.1:-65563630 | None:intergenic |
| AACAGAGAGCTGTGTACCGT+TGG | 0.563128 | 8.1:+65564145 | MS.gene056200:intron |
| TGCGCTGAAAAGGGTTGGAA+CGG | 0.566936 | 8.1:+65565052 | MS.gene056200:CDS |
| CTTCTAAGGAATGCTTGTAA+CGG | 0.568638 | 8.1:-65564308 | None:intergenic |
| TTTGGCGAATGTAGCCATCA+AGG | 0.578762 | 8.1:+65564197 | MS.gene056200:CDS |
| GTCATTGATGCATCGAATCG+CGG | 0.579244 | 8.1:-65564878 | None:intergenic |
| TTATTGTACCTCAAAGTCAC+CGG | 0.579698 | 8.1:-65564016 | None:intergenic |
| GCGAATGTAGCCATCAAGGA+TGG | 0.580173 | 8.1:+65564201 | MS.gene056200:CDS |
| GACTCGTGTGGTGGTGACAA+GGG | 0.592907 | 8.1:+65565088 | MS.gene056200:CDS |
| AGTTCATCCTTACCTTGTTG+GGG | 0.599506 | 8.1:+65565210 | MS.gene056200:CDS |
| CCTTTGTTATGGAAATGCCA+TGG | 0.602491 | 8.1:-65564718 | None:intergenic |
| GAGAAACAGTGTTCACCTTG+AGG | 0.606208 | 8.1:+65565151 | MS.gene056200:CDS |
| TTATCAAGAAATTTACCAAG+AGG | 0.614448 | 8.1:+65563963 | MS.gene056200:CDS |
| TCAATCTTGCTTCCCCAACA+AGG | 0.625874 | 8.1:-65565222 | None:intergenic |
| GATCTAGCTGCTCATACCAC+CGG | 0.629596 | 8.1:+65564333 | MS.gene056200:CDS |
| TGTTCACCTTGAGGATGCAG+TGG | 0.633928 | 8.1:+65565160 | MS.gene056200:CDS |
| CAGCGGGTTCCAGCATCCAA+CGG | 0.635658 | 8.1:-65564161 | None:intergenic |
| CCATGGCATTTCCATAACAA+AGG | 0.649108 | 8.1:+65564718 | MS.gene056200:CDS |
| GTGAGCTCATTTAGATATGG+CGG | 0.649359 | 8.1:+65564542 | MS.gene056200:CDS |
| TGCCATGGTCATCTCTATAG+CGG | 0.655258 | 8.1:-65564703 | None:intergenic |
| CTGCATCTGCAACAGCAGAG+TGG | 0.660256 | 8.1:-65563638 | None:intergenic |
| TGCCTGGCGAAGATGACCGG+TGG | 0.671475 | 8.1:-65564349 | None:intergenic |
| TGCATCTGATGACTTTCACA+AGG | 0.672519 | 8.1:+65564846 | MS.gene056200:CDS |
| AAACAATTTCAATAATAACA+TGG | 0.685647 | 8.1:-65564236 | None:intergenic |
| CATGATGTTTAGATTCTGCG+CGG | 0.707946 | 8.1:+65565029 | MS.gene056200:intron |
| TGAAGATGGACTGACTCGTG+TGG | 0.728074 | 8.1:+65565076 | MS.gene056200:CDS |
| AACCGCTATAGAGATGACCA+TGG | 0.734411 | 8.1:+65564701 | MS.gene056200:CDS |
| AGATGGACTGACTCGTGTGG+TGG | 0.744616 | 8.1:+65565079 | MS.gene056200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGTTACATAAAAAATA+AGG | - | chr8.1:65564077-65564096 | None:intergenic | 10.0% |
| !! | GAAATTAAAATAATCAAATT+AGG | + | chr8.1:65564402-65564421 | MS.gene056200:intron | 10.0% |
| !!! | ATTTGATTATTTTAATTTCA+AGG | - | chr8.1:65564401-65564420 | None:intergenic | 10.0% |
| !! | AAACAATTTCAATAATAACA+TGG | - | chr8.1:65564239-65564258 | None:intergenic | 15.0% |
| !! | TGTCAAAAAAAAATAATACA+TGG | + | chr8.1:65563751-65563770 | MS.gene056200:intron | 15.0% |
| !!! | TATGTTAGATAATCAAATTT+TGG | + | chr8.1:65564493-65564512 | MS.gene056200:intron | 15.0% |
| !! | AAAGCGAAAACAAAAATAAA+TGG | - | chr8.1:65564769-65564788 | None:intergenic | 20.0% |
| !! | AATAAGGTATATGAAATTGT+TGG | - | chr8.1:65564061-65564080 | None:intergenic | 20.0% |
| !! | ACAAAAATAAATGGTAAAAG+AGG | - | chr8.1:65564760-65564779 | None:intergenic | 20.0% |
| !! | ACATAAAAATATTGATGTTG+CGG | + | chr8.1:65563793-65563812 | MS.gene056200:intron | 20.0% |
| !! | CAAAAATAAATGGTAAAAGA+GGG | - | chr8.1:65564759-65564778 | None:intergenic | 20.0% |
| !! | GGTAAAAAAAAAAAAGATCA+CGG | - | chr8.1:65565010-65565029 | None:intergenic | 20.0% |
| ! | AATAATACATGGTAACATTG+TGG | + | chr8.1:65563762-65563781 | MS.gene056200:intron | 25.0% |
| ! | GAATCAATCAAAGAGAAAAA+AGG | + | chr8.1:65564614-65564633 | MS.gene056200:CDS | 25.0% |
| ! | TTATCAAGAAATTTACCAAG+AGG | + | chr8.1:65563963-65563982 | MS.gene056200:CDS | 25.0% |
| !! | TGAATGATTTTGAATTGTGT+AGG | + | chr8.1:65563862-65563881 | MS.gene056200:intron | 25.0% |
| !!! | AAGAGTGTTATCACAATTTT+GGG | + | chr8.1:65563901-65563920 | MS.gene056200:CDS | 25.0% |
| !!! | ACTTTTTTTCACCTTTGTTA+TGG | - | chr8.1:65564732-65564751 | None:intergenic | 25.0% |
| !!! | TCAATATTTTTATGTGTCTG+AGG | - | chr8.1:65563788-65563807 | None:intergenic | 25.0% |
| TCCAATAGTTTCTGTAATCA+AGG | - | chr8.1:65564823-65564842 | None:intergenic | 30.0% | |
| TCCTTGATTACAGAAACTAT+TGG | + | chr8.1:65564819-65564838 | MS.gene056200:intron | 30.0% | |
| TTACAAGTTTATGTGTGAGA+CGG | - | chr8.1:65564966-65564985 | None:intergenic | 30.0% | |
| ! | ATTTTGAATTGTGTAGGATG+GGG | + | chr8.1:65563868-65563887 | MS.gene056200:intron | 30.0% |
| ! | CCTTTTCATAGTACTTCTTA+TGG | - | chr8.1:65564903-65564922 | None:intergenic | 30.0% |
| ! | CTTAGCATTTTCATGTTAGT+CGG | + | chr8.1:65564430-65564449 | MS.gene056200:intron | 30.0% |
| ! | GATAAGAATTTTTGTGAACG+TGG | - | chr8.1:65564796-65564815 | None:intergenic | 30.0% |
| ! | GATTTTGAATTGTGTAGGAT+GGG | + | chr8.1:65563867-65563886 | MS.gene056200:intron | 30.0% |
| ! | TAGTTTCTTCGATTTGTTCA+AGG | + | chr8.1:65564928-65564947 | MS.gene056200:intron | 30.0% |
| ! | TGATTTTGAATTGTGTAGGA+TGG | + | chr8.1:65563866-65563885 | MS.gene056200:intron | 30.0% |
| !! | AGTCGATATTTTGAATAACG+TGG | + | chr8.1:65564113-65564132 | MS.gene056200:intron | 30.0% |
| !! | CCATAAGAAGTACTATGAAA+AGG | + | chr8.1:65564900-65564919 | MS.gene056200:CDS | 30.0% |
| !!! | GAAGAGTGTTATCACAATTT+TGG | + | chr8.1:65563900-65563919 | MS.gene056200:CDS | 30.0% |
| AAGTTCATCCTTACCTTGTT+GGG | + | chr8.1:65565209-65565228 | MS.gene056200:CDS | 35.0% | |
| CCATTAGAATCCTTACTACA+AGG | + | chr8.1:65564651-65564670 | MS.gene056200:CDS | 35.0% | |
| CCTTGTAGTAAGGATTCTAA+TGG | - | chr8.1:65564654-65564673 | None:intergenic | 35.0% | |
| GCTCTTCAAAAAGCTTTCAA+AGG | + | chr8.1:65563663-65563682 | MS.gene056200:CDS | 35.0% | |
| TCAGCGATTATAACCAAGAT+TGG | - | chr8.1:65563834-65563853 | None:intergenic | 35.0% | |
| TTATTGTACCTCAAAGTCAC+CGG | - | chr8.1:65564019-65564038 | None:intergenic | 35.0% | |
| ! | AGATGATTTAATGACTTGCC+TGG | - | chr8.1:65564368-65564387 | None:intergenic | 35.0% |
| ! | CTTCTAAGGAATGCTTGTAA+CGG | - | chr8.1:65564311-65564330 | None:intergenic | 35.0% |
| ! | GCTTCAGTTTTTGCCAATTT+CGG | - | chr8.1:65564581-65564600 | None:intergenic | 35.0% |
| ! | TTTTGAATTGTGTAGGATGG+GGG | + | chr8.1:65563869-65563888 | MS.gene056200:intron | 35.0% |
| AGCAGCTAGATCTTCTTCTA+AGG | - | chr8.1:65564325-65564344 | None:intergenic | 40.0% | |
| AGTTCATCCTTACCTTGTTG+GGG | + | chr8.1:65565210-65565229 | MS.gene056200:CDS | 40.0% | |
| CAAATCGCATATGCCAATCT+TGG | + | chr8.1:65563818-65563837 | MS.gene056200:intron | 40.0% | |
| CAAGATTGGCATATGCGATT+TGG | - | chr8.1:65563820-65563839 | None:intergenic | 40.0% | |
| CATGATGTTTAGATTCTGCG+CGG | + | chr8.1:65565029-65565048 | MS.gene056200:intron | 40.0% | |
| CCATGGCATTTCCATAACAA+AGG | + | chr8.1:65564718-65564737 | MS.gene056200:CDS | 40.0% | |
| CTGGTGAGCTCATTTAGATA+TGG | + | chr8.1:65564539-65564558 | MS.gene056200:CDS | 40.0% | |
| GAAGTTCATCCTTACCTTGT+TGG | + | chr8.1:65565208-65565227 | MS.gene056200:CDS | 40.0% | |
| GTGAGCTCATTTAGATATGG+CGG | + | chr8.1:65564542-65564561 | MS.gene056200:CDS | 40.0% | |
| TCTTTCACCTGAAGAAGTCT+TGG | + | chr8.1:65564263-65564282 | MS.gene056200:CDS | 40.0% | |
| TGCATCTGATGACTTTCACA+AGG | + | chr8.1:65564846-65564865 | MS.gene056200:CDS | 40.0% | |
| TGCTGAGATCAATCCGAAAT+TGG | + | chr8.1:65564565-65564584 | MS.gene056200:CDS | 40.0% | |
| ! | ACTTTTGCTTCCATCCTTGA+TGG | - | chr8.1:65564214-65564233 | None:intergenic | 40.0% |
| ! | CCTTTGTTATGGAAATGCCA+TGG | - | chr8.1:65564721-65564740 | None:intergenic | 40.0% |
| !!! | TTTGGCTCTTTTGCAGCTTT+TGG | + | chr8.1:65564511-65564530 | MS.gene056200:intron | 40.0% |
| AACCGCTATAGAGATGACCA+TGG | + | chr8.1:65564701-65564720 | MS.gene056200:CDS | 45.0% | |
| AAGGGCTGAGAAAGACTTGA+AGG | + | chr8.1:65565106-65565125 | MS.gene056200:CDS | 45.0% | |
| CGCGCAGAATCTAAACATCA+TGG | - | chr8.1:65565031-65565050 | None:intergenic | 45.0% | |
| CTCATTGCCAAGACTTCTTC+AGG | - | chr8.1:65564273-65564292 | None:intergenic | 45.0% | |
| GAGAAACAGTGTTCACCTTG+AGG | + | chr8.1:65565151-65565170 | MS.gene056200:CDS | 45.0% | |
| GAGTCTTGCTCCTTGTAGTA+AGG | - | chr8.1:65564664-65564683 | None:intergenic | 45.0% | |
| GCAGTGGCAAAGGAAATTTC+AGG | + | chr8.1:65565176-65565195 | MS.gene056200:CDS | 45.0% | |
| GTCATTGATGCATCGAATCG+CGG | - | chr8.1:65564881-65564900 | None:intergenic | 45.0% | |
| TCAATCTTGCTTCCCCAACA+AGG | - | chr8.1:65565225-65565244 | None:intergenic | 45.0% | |
| TGCCATGGTCATCTCTATAG+CGG | - | chr8.1:65564706-65564725 | None:intergenic | 45.0% | |
| TTTGGCGAATGTAGCCATCA+AGG | + | chr8.1:65564197-65564216 | MS.gene056200:CDS | 45.0% | |
| ! | GCTCTTTTGCAGCTTTTGGT+TGG | + | chr8.1:65564515-65564534 | MS.gene056200:intron | 45.0% |
| ! | GTTCAGATTCAAGGCGTTTG+AGG | - | chr8.1:65563993-65564012 | None:intergenic | 45.0% |
| !! | AGTGGTTGATGGGAGCAATA+AGG | - | chr8.1:65563623-65563642 | None:intergenic | 45.0% |
| !! | GTGGTTGATGGGAGCAATAA+GGG | - | chr8.1:65563622-65563641 | None:intergenic | 45.0% |
| !! | TTTGCAGCTTTTGGTTGGAC+TGG | + | chr8.1:65564520-65564539 | MS.gene056200:intron | 45.0% |
| AAAACAGCATCGCGATCAGC+GGG | - | chr8.1:65564180-65564199 | None:intergenic | 50.0% | |
| AACAGAGAGCTGTGTACCGT+TGG | + | chr8.1:65564145-65564164 | MS.gene056200:intron | 50.0% | |
| AGGGTTGGAACGGATGAAGA+TGG | + | chr8.1:65565062-65565081 | MS.gene056200:CDS | 50.0% | |
| CAAAACAGCATCGCGATCAG+CGG | - | chr8.1:65564181-65564200 | None:intergenic | 50.0% | |
| CACCGGAGAGTTCAGATTCA+AGG | - | chr8.1:65564002-65564021 | None:intergenic | 50.0% | |
| CGCCTTGAATCTGAACTCTC+CGG | + | chr8.1:65563997-65564016 | MS.gene056200:CDS | 50.0% | |
| CTTGCTTCCCCAACAAGGTA+AGG | - | chr8.1:65565220-65565239 | None:intergenic | 50.0% | |
| GATCTAGCTGCTCATACCAC+CGG | + | chr8.1:65564333-65564352 | MS.gene056200:CDS | 50.0% | |
| GCAACAGCAGAGTGGTTGAT+GGG | - | chr8.1:65563633-65563652 | None:intergenic | 50.0% | |
| GCGAATGTAGCCATCAAGGA+TGG | + | chr8.1:65564201-65564220 | MS.gene056200:CDS | 50.0% | |
| GGCGTTTGAGGATATCCTCT+TGG | - | chr8.1:65563981-65564000 | None:intergenic | 50.0% | |
| TGAACTCTCCGGTGACTTTG+AGG | + | chr8.1:65564008-65564027 | MS.gene056200:CDS | 50.0% | |
| TGCAACAGCAGAGTGGTTGA+TGG | - | chr8.1:65563634-65563653 | None:intergenic | 50.0% | |
| TGCGCTGAAAAGGGTTGGAA+CGG | + | chr8.1:65565052-65565071 | MS.gene056200:CDS | 50.0% | |
| TGTTCACCTTGAGGATGCAG+TGG | + | chr8.1:65565160-65565179 | MS.gene056200:CDS | 50.0% | |
| !! | TGAAGATGGACTGACTCGTG+TGG | + | chr8.1:65565076-65565095 | MS.gene056200:CDS | 50.0% |
| ACTTGCCTGGCGAAGATGAC+CGG | - | chr8.1:65564355-65564374 | None:intergenic | 55.0% | |
| AGCTGTGTACCGTTGGATGC+TGG | + | chr8.1:65564152-65564171 | MS.gene056200:CDS | 55.0% | |
| CCTTGAGGATGCAGTGGCAA+AGG | + | chr8.1:65565166-65565185 | MS.gene056200:CDS | 55.0% | |
| CCTTTGCCACTGCATCCTCA+AGG | - | chr8.1:65565169-65565188 | None:intergenic | 55.0% | |
| CTGCATCTGCAACAGCAGAG+TGG | - | chr8.1:65563641-65563660 | None:intergenic | 55.0% | |
| ! | GACTCGTGTGGTGGTGACAA+GGG | + | chr8.1:65565088-65565107 | MS.gene056200:CDS | 55.0% |
| ! | TGACTCGTGTGGTGGTGACA+AGG | + | chr8.1:65565087-65565106 | MS.gene056200:CDS | 55.0% |
| !! | AGATGGACTGACTCGTGTGG+TGG | + | chr8.1:65565079-65565098 | MS.gene056200:CDS | 55.0% |
| !! | CGCTGATCGCGATGCTGTTT+TGG | + | chr8.1:65564179-65564198 | MS.gene056200:CDS | 55.0% |
| TACCACCGGTCATCTTCGCC+AGG | + | chr8.1:65564347-65564366 | MS.gene056200:CDS | 60.0% | |
| TCTGCGCGGTGCGCTGAAAA+GGG | + | chr8.1:65565043-65565062 | MS.gene056200:CDS | 60.0% | |
| TTCTGCGCGGTGCGCTGAAA+AGG | + | chr8.1:65565042-65565061 | MS.gene056200:CDS | 60.0% | |
| ! | CAGCGGGTTCCAGCATCCAA+CGG | - | chr8.1:65564164-65564183 | None:intergenic | 60.0% |
| CGCGGTGCGCTGAAAAGGGT+TGG | + | chr8.1:65565047-65565066 | MS.gene056200:CDS | 65.0% | |
| TGCCTGGCGAAGATGACCGG+TGG | - | chr8.1:65564352-65564371 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 65563612 | 65565244 | 65563612 | ID=MS.gene056200 |
| chr8.1 | mRNA | 65563612 | 65565244 | 65563612 | ID=MS.gene056200.t1;Parent=MS.gene056200 |
| chr8.1 | exon | 65563612 | 65563684 | 65563612 | ID=MS.gene056200.t1.exon1;Parent=MS.gene056200.t1 |
| chr8.1 | CDS | 65563612 | 65563684 | 65563612 | ID=cds.MS.gene056200.t1;Parent=MS.gene056200.t1 |
| chr8.1 | exon | 65563884 | 65564029 | 65563884 | ID=MS.gene056200.t1.exon2;Parent=MS.gene056200.t1 |
| chr8.1 | CDS | 65563884 | 65564029 | 65563884 | ID=cds.MS.gene056200.t1;Parent=MS.gene056200.t1 |
| chr8.1 | exon | 65564150 | 65564368 | 65564150 | ID=MS.gene056200.t1.exon3;Parent=MS.gene056200.t1 |
| chr8.1 | CDS | 65564150 | 65564368 | 65564150 | ID=cds.MS.gene056200.t1;Parent=MS.gene056200.t1 |
| chr8.1 | exon | 65564527 | 65564739 | 65564527 | ID=MS.gene056200.t1.exon4;Parent=MS.gene056200.t1 |
| chr8.1 | CDS | 65564527 | 65564739 | 65564527 | ID=cds.MS.gene056200.t1;Parent=MS.gene056200.t1 |
| chr8.1 | exon | 65564832 | 65564921 | 65564832 | ID=MS.gene056200.t1.exon5;Parent=MS.gene056200.t1 |
| chr8.1 | CDS | 65564832 | 65564921 | 65564832 | ID=cds.MS.gene056200.t1;Parent=MS.gene056200.t1 |
| chr8.1 | exon | 65565041 | 65565244 | 65565041 | ID=MS.gene056200.t1.exon6;Parent=MS.gene056200.t1 |
| chr8.1 | CDS | 65565041 | 65565244 | 65565041 | ID=cds.MS.gene056200.t1;Parent=MS.gene056200.t1 |
| Gene Sequence |
| Protein sequence |
