Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92539.t1 | XP_013454961.1 | 98.3 | 757 | 12 | 1 | 1 | 757 | 1 | 756 | 0.00E+00 | 1431.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92539.t1 | O04015 | 79.5 | 709 | 145 | 0 | 44 | 752 | 4 | 712 | 0.0e+00 | 1097.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92539.t1 | G8IJI0 | 98.3 | 757 | 12 | 1 | 1 | 757 | 1 | 756 | 0.0e+00 | 1431.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92539 | MS.gene73119 | PPI |
| MS.gene92539 | MS.gene99360 | PPI |
| MS.gene78111 | MS.gene92539 | PPI |
| MS.gene92539 | MS.gene03802 | PPI |
| MS.gene66800 | MS.gene92539 | PPI |
| MS.gene92539 | MS.gene064542 | PPI |
| MS.gene035805 | MS.gene92539 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92539.t1 | MTR_4g020110 | 98.283 | 757 | 12 | 1 | 1 | 757 | 1 | 756 | 0.0 | 1514 |
| MS.gene92539.t1 | MTR_4g020110 | 97.766 | 761 | 12 | 2 | 1 | 757 | 1 | 760 | 0.0 | 1508 |
| MS.gene92539.t1 | MTR_4g020110 | 98.100 | 737 | 11 | 2 | 1 | 737 | 1 | 734 | 0.0 | 1464 |
| MS.gene92539.t1 | MTR_4g020110 | 97.759 | 714 | 15 | 1 | 44 | 757 | 1 | 713 | 0.0 | 1421 |
| MS.gene92539.t1 | MTR_4g020110 | 98.487 | 661 | 9 | 1 | 1 | 661 | 1 | 660 | 0.0 | 1320 |
| MS.gene92539.t1 | MTR_7g063650 | 84.314 | 714 | 112 | 0 | 44 | 757 | 1 | 714 | 0.0 | 1226 |
| MS.gene92539.t1 | MTR_3g069080 | 75.983 | 712 | 171 | 0 | 41 | 752 | 1 | 712 | 0.0 | 1093 |
| MS.gene92539.t1 | MTR_4g095062 | 57.426 | 101 | 38 | 3 | 606 | 704 | 233 | 330 | 1.27e-25 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92539.t1 | AT3G55610 | 74.719 | 712 | 180 | 0 | 41 | 752 | 1 | 712 | 0.0 | 1083 |
| MS.gene92539.t1 | AT2G39800 | 75.035 | 717 | 179 | 0 | 41 | 757 | 1 | 717 | 0.0 | 1079 |
| MS.gene92539.t1 | AT2G39800 | 75.035 | 717 | 179 | 0 | 41 | 757 | 1 | 717 | 0.0 | 1079 |
| MS.gene92539.t1 | AT2G39800 | 74.616 | 717 | 179 | 1 | 41 | 757 | 1 | 714 | 0.0 | 1066 |
| MS.gene92539.t1 | AT2G39800 | 74.756 | 614 | 155 | 0 | 144 | 757 | 1 | 614 | 0.0 | 920 |
| MS.gene92539.t1 | AT3G55610 | 73.269 | 621 | 166 | 0 | 41 | 661 | 1 | 621 | 0.0 | 919 |
Find 169 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAGCATAATCGTATTT+TGG | 0.184262 | 4.2:+81954866 | None:intergenic |
| GGGAATGGCTTATTACTTAA+AGG | 0.220041 | 4.2:-81953755 | MS.gene92539:CDS |
| TTCTTGCCTTCTCAGGCTTC+AGG | 0.229467 | 4.2:+81954779 | None:intergenic |
| GCTAATTACCATTGCATTGC+AGG | 0.236335 | 4.2:+81953151 | None:intergenic |
| CATCAAAGAGAAATTACTTT+TGG | 0.238637 | 4.2:-81956180 | MS.gene92539:CDS |
| ACAGTCAGTGGCAAACTTAT+TGG | 0.261768 | 4.2:-81953561 | MS.gene92539:CDS |
| TACGATTATGCTTGAAAATC+AGG | 0.302996 | 4.2:-81954860 | MS.gene92539:CDS |
| GGAGAAAATATCATGTCCTT+TGG | 0.320472 | 4.2:-81954044 | MS.gene92539:CDS |
| TTTAGCACAGCACTAGCTTT+TGG | 0.327025 | 4.2:+81952647 | None:intergenic |
| TCAAGGCTATGAAGTTATAT+TGG | 0.328978 | 4.2:-81957666 | MS.gene92539:CDS |
| CAGTCAGTGGCAAACTTATT+GGG | 0.332216 | 4.2:-81953560 | MS.gene92539:CDS |
| ACTTCAGGTGCTGTTGGTCT+TGG | 0.332977 | 4.2:-81957641 | MS.gene92539:CDS |
| GCTAGCTGATGAACTCGTTT+TGG | 0.333385 | 4.2:-81954065 | MS.gene92539:CDS |
| AGATGGCAAAGCAGATAGTT+AGG | 0.336883 | 4.2:-81953199 | MS.gene92539:CDS |
| ATATTTACCTTTAGTAGATC+TGG | 0.342433 | 4.2:+81953513 | None:intergenic |
| GTAAGACCGCATTTGATCTT+CGG | 0.344839 | 4.2:+81953720 | None:intergenic |
| GCTGTTTGTGCTGCTCATGC+TGG | 0.345250 | 4.2:-81956108 | MS.gene92539:CDS |
| CACTGCCTGCAGGATTCTTC+TGG | 0.349022 | 4.2:-81956354 | MS.gene92539:intron |
| TAAGACCGCATTTGATCTTC+GGG | 0.350517 | 4.2:+81953721 | None:intergenic |
| AGTTTGCCACTGACTGTATC+TGG | 0.350718 | 4.2:+81953567 | None:intergenic |
| GAAGTTATATTGGTGACTTC+AGG | 0.351606 | 4.2:-81957656 | MS.gene92539:CDS |
| CTCTTCAAAATCTGACCAAT+TGG | 0.353373 | 4.2:+81954550 | None:intergenic |
| TTAGTAAGGGGTACCTCAAT+AGG | 0.354075 | 4.2:+81962842 | None:intergenic |
| GTGCTTCAAGGGGAGAAAAT+AGG | 0.364668 | 4.2:-81955395 | MS.gene92539:CDS |
| GCCTTCCATGTTTATTTATG+TGG | 0.369341 | 4.2:+81952537 | None:intergenic |
| AAGACTTCGATACCGCAAAT+TGG | 0.377344 | 4.2:-81957612 | MS.gene92539:CDS |
| TCGCAGCACGTAACAGTTCC+AGG | 0.377443 | 4.2:-81955304 | MS.gene92539:CDS |
| GAGAAAATATCATGTCCTTT+GGG | 0.383223 | 4.2:-81954043 | MS.gene92539:CDS |
| ACCTGCTATTTGCCAATTTG+CGG | 0.383241 | 4.2:+81957600 | None:intergenic |
| TTCATAGAGATGCACATCTA+TGG | 0.384701 | 4.2:-81955364 | MS.gene92539:CDS |
| GATGGAGCACGCTTTGGACT+AGG | 0.385831 | 4.2:-81951323 | MS.gene92539:CDS |
| AAAGGTCAGCTTTAAGTTCA+AGG | 0.387629 | 4.2:+81956292 | None:intergenic |
| CTTGCAGGTGTTCAAATATA+TGG | 0.392654 | 4.2:-81952674 | MS.gene92539:intron |
| ATTTAAGTTCTTGCCTTCTC+AGG | 0.397732 | 4.2:+81954772 | None:intergenic |
| CATCACTTAATAAAACTAAA+AGG | 0.399701 | 4.2:+81956274 | None:intergenic |
| AAATACCTAGTTATAACAAC+AGG | 0.400007 | 4.2:+81956081 | None:intergenic |
| TCGACCTGATGCTCTTGTTC+AGG | 0.404694 | 4.2:-81953996 | MS.gene92539:intron |
| TTATTCCATTACCATTAGTA+AGG | 0.405027 | 4.2:+81962828 | None:intergenic |
| TGTGCGTGTGCTGGCAGATA+TGG | 0.405412 | 4.2:-81954578 | MS.gene92539:CDS |
| GTTGCTGATGCTGTGGCAGC+TGG | 0.405518 | 4.2:-81954832 | MS.gene92539:CDS |
| AACCTTCACGTTGGAGTTCA+AGG | 0.410020 | 4.2:+81952937 | None:intergenic |
| GGTTAAGCGTTTGATTGTTA+AGG | 0.411046 | 4.2:-81962732 | MS.gene92539:intron |
| TCTTGCCTTCTCAGGCTTCA+GGG | 0.415137 | 4.2:+81954780 | None:intergenic |
| TGTTGGGCAGAGTAGTCTTA+TGG | 0.415769 | 4.2:-81957057 | MS.gene92539:CDS |
| CTTAAAGAACTAAACCTTCA+AGG | 0.416020 | 4.2:-81957683 | MS.gene92539:CDS |
| TGCAAAGTCTGTGCGTGTGC+TGG | 0.419836 | 4.2:-81954587 | MS.gene92539:CDS |
| TCAACAAGAATCCCTGTTCT+TGG | 0.420756 | 4.2:-81953354 | MS.gene92539:CDS |
| CACTTGGAGGACCACTATAA+AGG | 0.426951 | 4.2:+81956244 | None:intergenic |
| TAACAGTTCCAGGAGACTTC+AGG | 0.432633 | 4.2:-81955294 | MS.gene92539:intron |
| ATATAACTTCATAGCCTTGA+AGG | 0.434655 | 4.2:+81957669 | None:intergenic |
| CAGTTTCAGTAATCAAGTTA+AGG | 0.435092 | 4.2:+81962798 | None:intergenic |
| AAGCCACAAGGTGACCTTGA+TGG | 0.435398 | 4.2:-81957095 | MS.gene92539:CDS |
| ATGTTTATTTATGTGGTCAA+TGG | 0.439253 | 4.2:+81952544 | None:intergenic |
| TCACAACTTCTAGTGAATGA+TGG | 0.439982 | 4.2:-81956897 | MS.gene92539:CDS |
| ACCATTGCATTGCAGGCTGC+AGG | 0.440216 | 4.2:+81953158 | None:intergenic |
| TAAGCTTGTTTCTCAAATCA+AGG | 0.441036 | 4.2:-81953379 | MS.gene92539:CDS |
| AGATTAGCACTGGGCAGACT+TGG | 0.441937 | 4.2:-81958041 | MS.gene92539:CDS |
| GTCGAGACTCAAATATAATC+AGG | 0.443464 | 4.2:+81954014 | None:intergenic |
| TGGGACAATGACAGTTTGGC+TGG | 0.444164 | 4.2:-81956324 | MS.gene92539:CDS |
| AAGCCATAGAATACCTCATA+TGG | 0.449620 | 4.2:+81956759 | None:intergenic |
| TTGTTGACAAAGGCTCTTGA+AGG | 0.450746 | 4.2:+81962755 | None:intergenic |
| AGAAAGGAGGAAAATATTGC+TGG | 0.458916 | 4.2:-81954914 | MS.gene92539:CDS |
| TAACTTGATTACTGAAACTG+AGG | 0.463346 | 4.2:-81962795 | MS.gene92539:CDS |
| AACAATCCCTCGACTCCTAC+AGG | 0.466514 | 4.2:+81951167 | None:intergenic |
| TTACCAGCATGACCAAGAAC+AGG | 0.466579 | 4.2:+81953342 | None:intergenic |
| AACATTATACGAGTGCTTCA+AGG | 0.470573 | 4.2:-81955407 | MS.gene92539:CDS |
| GGAAGAGAGTGCGCATGAAA+TGG | 0.473708 | 4.2:-81955330 | MS.gene92539:CDS |
| TACTAGGAAGGCACCATATG+AGG | 0.477182 | 4.2:-81956772 | MS.gene92539:intron |
| ATCCCTGTTCTTGGTCATGC+TGG | 0.477939 | 4.2:-81953345 | MS.gene92539:intron |
| AATACCTGAACAAGAGCATC+AGG | 0.478922 | 4.2:+81953992 | None:intergenic |
| TTTGGAGACAAATCAAGATT+GGG | 0.481455 | 4.2:-81956162 | MS.gene92539:CDS |
| TTATATAATGCAGGATATTG+AGG | 0.481462 | 4.2:-81950813 | MS.gene92539:intron |
| GTACCCCTTACTAATGGTAA+TGG | 0.482989 | 4.2:-81962833 | MS.gene92539:CDS |
| TTTGAGTTTGGGTCACTTGG+AGG | 0.483545 | 4.2:+81956231 | None:intergenic |
| GACAAATCAAGATTGGGCAG+AGG | 0.488517 | 4.2:-81956156 | MS.gene92539:CDS |
| CATTCTTATCTCAAGTTGAC+AGG | 0.490759 | 4.2:-81952369 | MS.gene92539:intron |
| GCCACTGACTGTATCTGGTA+TGG | 0.493767 | 4.2:+81953572 | None:intergenic |
| ATGGAGCACGCTTTGGACTA+GGG | 0.494430 | 4.2:-81951322 | MS.gene92539:CDS |
| CAAGCTTATTACTGCCTCTA+GGG | 0.494703 | 4.2:+81953394 | None:intergenic |
| AAGGGGTACCTCAATAGGTT+TGG | 0.495921 | 4.2:+81962847 | None:intergenic |
| ACCGCAAATTGGCAAATAGC+AGG | 0.496549 | 4.2:-81957601 | MS.gene92539:intron |
| ATTGAGGTACCCCTTACTAA+TGG | 0.501029 | 4.2:-81962839 | MS.gene92539:CDS |
| ACATTATACGAGTGCTTCAA+GGG | 0.504792 | 4.2:-81955406 | MS.gene92539:CDS |
| CACAACTTCTAGTGAATGAT+GGG | 0.506906 | 4.2:-81956896 | MS.gene92539:CDS |
| CACCATCACCAAACCTATTG+AGG | 0.509868 | 4.2:-81962855 | MS.gene92539:CDS |
| TATATAATGCAGGATATTGA+GGG | 0.510276 | 4.2:-81950812 | MS.gene92539:intron |
| CTCAATAGGTTTGGTGATGG+TGG | 0.515987 | 4.2:+81962856 | None:intergenic |
| TTCAAGAGCCTTTGTCAACA+AGG | 0.516226 | 4.2:-81962753 | MS.gene92539:CDS |
| TTGGCAATTCGAAGTGGGAA+TGG | 0.517957 | 4.2:-81953770 | MS.gene92539:CDS |
| AAAATGATGCTGTTAGTACT+AGG | 0.518973 | 4.2:-81956788 | MS.gene92539:CDS |
| AAGTGATGGAAGATTAGCAC+TGG | 0.519612 | 4.2:-81958051 | MS.gene92539:CDS |
| TTGGTGACTTCAGGTGCTGT+TGG | 0.521178 | 4.2:-81957647 | MS.gene92539:CDS |
| AGGGATTGTTGACAAACAAA+TGG | 0.525711 | 4.2:-81951154 | MS.gene92539:intron |
| AAGGTCAGCTTTAAGTTCAA+GGG | 0.526790 | 4.2:+81956293 | None:intergenic |
| GAAAAGCATGTGCAGCTGTT+GGG | 0.530069 | 4.2:-81957073 | MS.gene92539:CDS |
| ACAAATCAAGATTGGGCAGA+GGG | 0.530530 | 4.2:-81956155 | MS.gene92539:CDS |
| TACCTCGTTATTAGAATCGA+AGG | 0.531369 | 4.2:-81956829 | MS.gene92539:CDS |
| CTTATTACTTAAAGGAGGAA+AGG | 0.531505 | 4.2:-81953747 | MS.gene92539:CDS |
| TAATTAATAGATAGCAGCAT+TGG | 0.535006 | 4.2:-81953789 | MS.gene92539:intron |
| GATGGCAAAGCAGATAGTTA+GGG | 0.536329 | 4.2:-81953198 | MS.gene92539:CDS |
| GCTGGCAGTGGCTGATGCAT+TGG | 0.538131 | 4.2:-81954896 | MS.gene92539:CDS |
| GTATGATACTATGTTTAGCC+AGG | 0.539999 | 4.2:-81957030 | MS.gene92539:intron |
| GCAGATATGGAAGAACCAAT+TGG | 0.540903 | 4.2:-81954565 | MS.gene92539:CDS |
| ACAAGCTTATTACTGCCTCT+AGG | 0.542070 | 4.2:+81953393 | None:intergenic |
| GGCTGATGTTGCTGATGCTG+TGG | 0.549604 | 4.2:-81954839 | MS.gene92539:CDS |
| ACTTGGAGCTCTATGTGAGC+AGG | 0.551750 | 4.2:-81958024 | MS.gene92539:intron |
| TGAAATTCCAGATCTACTAA+AGG | 0.553352 | 4.2:-81953520 | MS.gene92539:intron |
| AGGCCCTAAAATCTGAAGAA+AGG | 0.554155 | 4.2:-81954930 | MS.gene92539:CDS |
| TACCTCAATAGGTTTGGTGA+TGG | 0.556432 | 4.2:+81962853 | None:intergenic |
| GCTGTTGTCACTCGAAGTGA+TGG | 0.559453 | 4.2:-81958065 | MS.gene92539:CDS |
| TATTCCATTACCATTAGTAA+GGG | 0.560138 | 4.2:+81962829 | None:intergenic |
| CGAGGTCCTGTAGGAGTCGA+GGG | 0.562132 | 4.2:-81951173 | MS.gene92539:CDS |
| ATCCTTGAACTCCAACGTGA+AGG | 0.565086 | 4.2:-81952939 | MS.gene92539:intron |
| GATGTTGAGGGCCTTTATAG+TGG | 0.565435 | 4.2:-81956255 | MS.gene92539:CDS |
| TTTATTTATGTGGTCAATGG+CGG | 0.570819 | 4.2:+81952547 | None:intergenic |
| TCCTGCAGCCTGCAATGCAA+TGG | 0.571728 | 4.2:-81953159 | MS.gene92539:intron |
| GCATCCCTGTTGTTATAACT+AGG | 0.572085 | 4.2:-81956086 | MS.gene92539:intron |
| GGAAAAGCATGTGCAGCTGT+TGG | 0.572419 | 4.2:-81957074 | MS.gene92539:CDS |
| CAAGTCTGCTAATATTGAGA+TGG | 0.580213 | 4.2:-81953216 | MS.gene92539:CDS |
| AACTGAGGATTTGAGCAACA+TGG | 0.583563 | 4.2:-81962780 | MS.gene92539:CDS |
| CACAAGGATCTGTCATGTAA+TGG | 0.583937 | 4.2:-81952978 | MS.gene92539:CDS |
| GGGAGTGGACAGGTAGTCGA+TGG | 0.585290 | 4.2:-81950790 | MS.gene92539:CDS |
| ATCAAATGCGGTCTTACACA+AGG | 0.591057 | 4.2:-81953714 | MS.gene92539:intron |
| AATGGCTTATTACTTAAAGG+AGG | 0.594695 | 4.2:-81953752 | MS.gene92539:CDS |
| TGATGCTGTTAGTACTAGGA+AGG | 0.595492 | 4.2:-81956784 | MS.gene92539:CDS |
| ACGCTTTGGACTAGGGGCAG+AGG | 0.595772 | 4.2:-81951315 | MS.gene92539:intron |
| TAATAACGAGGTAATTGTGT+CGG | 0.596135 | 4.2:+81956839 | None:intergenic |
| TTGCACAATTGAAATTGTAG+AGG | 0.596507 | 4.2:-81952579 | MS.gene92539:CDS |
| ACCACATAAATAAACATGGA+AGG | 0.597773 | 4.2:-81952538 | MS.gene92539:intron |
| ATTCATGCTCGAGGTCCTGT+AGG | 0.597900 | 4.2:-81951182 | MS.gene92539:CDS |
| GGAACTGTTACGTGCTGCGA+CGG | 0.598676 | 4.2:+81955307 | None:intergenic |
| AAATCAAGATTGGGCAGAGG+GGG | 0.599491 | 4.2:-81956153 | MS.gene92539:CDS |
| ACGCTTAACCTTGTTGACAA+AGG | 0.602740 | 4.2:+81962745 | None:intergenic |
| TCTGATCTTCAAAAGCCACA+AGG | 0.604032 | 4.2:-81957107 | MS.gene92539:CDS |
| TCGAGGTCCTGTAGGAGTCG+AGG | 0.610355 | 4.2:-81951174 | MS.gene92539:CDS |
| GAGGAAAATATTGCTGGCAG+TGG | 0.612236 | 4.2:-81954908 | MS.gene92539:CDS |
| TTTAACCCTGAAGCCTGAGA+AGG | 0.613809 | 4.2:-81954785 | MS.gene92539:intron |
| TGTCACAGAAGACTCTGAAG+TGG | 0.614012 | 4.2:-81952398 | MS.gene92539:CDS |
| CAGCATTGGCAATTCGAAGT+GGG | 0.617966 | 4.2:-81953775 | MS.gene92539:CDS |
| CACTCGTATAATGTTGTCTG+TGG | 0.619043 | 4.2:+81955415 | None:intergenic |
| CCCTAAAATCTGAAGAAAGG+AGG | 0.621678 | 4.2:-81954927 | MS.gene92539:CDS |
| TGGAGCACGCTTTGGACTAG+GGG | 0.622951 | 4.2:-81951321 | MS.gene92539:CDS |
| AAAACCGTGTACTTGCATTG+TGG | 0.623084 | 4.2:+81951348 | None:intergenic |
| CAGGTAGTCGATGGTGATCG+AGG | 0.623515 | 4.2:-81950781 | MS.gene92539:CDS |
| TGATGATGTGATAGATCTTG+TGG | 0.625953 | 4.2:-81953418 | MS.gene92539:CDS |
| ATTCCATTACCATTAGTAAG+GGG | 0.626101 | 4.2:+81962830 | None:intergenic |
| GGAGACTCTTCTTGTACACA+AGG | 0.627269 | 4.2:-81952994 | MS.gene92539:CDS |
| TTTCCATCAAGGTCACCTTG+TGG | 0.633965 | 4.2:+81957092 | None:intergenic |
| ATCATTCACTAGAAGTTGTG+AGG | 0.636467 | 4.2:+81956899 | None:intergenic |
| ATAGATCTTGTGGTCCCTAG+AGG | 0.639977 | 4.2:-81953408 | MS.gene92539:CDS |
| GCAGGTGTTCAAATATATGG+TGG | 0.640152 | 4.2:-81952671 | MS.gene92539:intron |
| TACCAGCATGACCAAGAACA+GGG | 0.642362 | 4.2:+81953343 | None:intergenic |
| TATTCCACAATGCAAGTACA+CGG | 0.643532 | 4.2:-81951352 | MS.gene92539:CDS |
| GCAGCATTGGCAATTCGAAG+TGG | 0.644064 | 4.2:-81953776 | MS.gene92539:CDS |
| ATTGACCACATAAATAAACA+TGG | 0.655940 | 4.2:-81952542 | MS.gene92539:CDS |
| ATATAATGCAGGATATTGAG+GGG | 0.656221 | 4.2:-81950811 | MS.gene92539:intron |
| ATAATCAGGAGGACACCCAA+AGG | 0.660018 | 4.2:+81954028 | None:intergenic |
| AAGGATCTGTCATGTAATGG+TGG | 0.660536 | 4.2:-81952975 | MS.gene92539:CDS |
| GCCATACCAGATACAGTCAG+TGG | 0.663367 | 4.2:-81953573 | MS.gene92539:CDS |
| ACAAGTCGAATTCATGCTCG+AGG | 0.666973 | 4.2:-81951191 | MS.gene92539:CDS |
| TATAATGCAGGATATTGAGG+GGG | 0.674210 | 4.2:-81950810 | MS.gene92539:intron |
| CAAATCAAGATTGGGCAGAG+GGG | 0.679854 | 4.2:-81956154 | MS.gene92539:CDS |
| GAGACTCAAATATAATCAGG+AGG | 0.682200 | 4.2:+81954017 | None:intergenic |
| AGTGATGGAAGATTAGCACT+GGG | 0.686494 | 4.2:-81958050 | MS.gene92539:CDS |
| CATTATACGAGTGCTTCAAG+GGG | 0.688933 | 4.2:-81955405 | MS.gene92539:CDS |
| GACCTTCGATTCTAATAACG+AGG | 0.691237 | 4.2:+81956827 | None:intergenic |
| GGAAGCCCGAAGATCAAATG+CGG | 0.703388 | 4.2:-81953726 | MS.gene92539:CDS |
| GTAAGGCCAAACCTTCACGT+TGG | 0.709134 | 4.2:+81952928 | None:intergenic |
| AATACCTAGTTATAACAACA+GGG | 0.742953 | 4.2:+81956082 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 81950741 | 81962912 | 81950741 | ID=MS.gene92539 |
| chr4.2 | mRNA | 81950741 | 81962912 | 81950741 | ID=MS.gene92539.t1;Parent=MS.gene92539 |
| chr4.2 | exon | 81962733 | 81962912 | 81962733 | ID=MS.gene92539.t1.exon1;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81962733 | 81962912 | 81962733 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81958025 | 81958096 | 81958025 | ID=MS.gene92539.t1.exon2;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81958025 | 81958096 | 81958025 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81957602 | 81957705 | 81957602 | ID=MS.gene92539.t1.exon3;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81957602 | 81957705 | 81957602 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81957031 | 81957133 | 81957031 | ID=MS.gene92539.t1.exon4;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81957031 | 81957133 | 81957031 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81956773 | 81956934 | 81956773 | ID=MS.gene92539.t1.exon5;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81956773 | 81956934 | 81956773 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81956087 | 81956364 | 81956087 | ID=MS.gene92539.t1.exon6;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81956087 | 81956364 | 81956087 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81955295 | 81955445 | 81955295 | ID=MS.gene92539.t1.exon7;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81955295 | 81955445 | 81955295 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81954786 | 81954950 | 81954786 | ID=MS.gene92539.t1.exon8;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81954786 | 81954950 | 81954786 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81954543 | 81954620 | 81954543 | ID=MS.gene92539.t1.exon9;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81954543 | 81954620 | 81954543 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81953997 | 81954086 | 81953997 | ID=MS.gene92539.t1.exon10;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81953997 | 81954086 | 81953997 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81953715 | 81953801 | 81953715 | ID=MS.gene92539.t1.exon11;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81953715 | 81953801 | 81953715 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81953521 | 81953607 | 81953521 | ID=MS.gene92539.t1.exon12;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81953521 | 81953607 | 81953521 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81953346 | 81953442 | 81953346 | ID=MS.gene92539.t1.exon13;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81953346 | 81953442 | 81953346 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81953160 | 81953263 | 81953160 | ID=MS.gene92539.t1.exon14;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81953160 | 81953263 | 81953160 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81952940 | 81953015 | 81952940 | ID=MS.gene92539.t1.exon15;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81952940 | 81953015 | 81952940 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81952539 | 81952689 | 81952539 | ID=MS.gene92539.t1.exon16;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81952539 | 81952689 | 81952539 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81952370 | 81952438 | 81952370 | ID=MS.gene92539.t1.exon17;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81952370 | 81952438 | 81952370 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81951316 | 81951382 | 81951316 | ID=MS.gene92539.t1.exon18;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81951316 | 81951382 | 81951316 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81951155 | 81951225 | 81951155 | ID=MS.gene92539.t1.exon19;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81951155 | 81951225 | 81951155 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| chr4.2 | exon | 81950741 | 81950822 | 81950741 | ID=MS.gene92539.t1.exon20;Parent=MS.gene92539.t1 |
| chr4.2 | CDS | 81950741 | 81950822 | 81950741 | ID=cds.MS.gene92539.t1;Parent=MS.gene92539.t1 |
| Gene Sequence |
| Protein sequence |
