Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92701.t1 | XP_013443065.1 | 98.9 | 367 | 4 | 0 | 1 | 367 | 1 | 367 | 7.20E-210 | 739.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92701.t1 | A0A072TU53 | 98.9 | 367 | 4 | 0 | 1 | 367 | 1 | 367 | 5.2e-210 | 739.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057990 | MS.gene92701 | 0.805411 | 1.35E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60267 | MS.gene92701 | PPI |
| MS.gene92701 | MS.gene015971 | PPI |
| MS.gene51556 | MS.gene92701 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92701.t1 | MTR_0045s0110 | 98.910 | 367 | 4 | 0 | 1 | 367 | 1 | 367 | 0.0 | 745 |
| MS.gene92701.t1 | MTR_4g039720 | 78.533 | 368 | 78 | 1 | 1 | 367 | 4 | 371 | 0.0 | 628 |
| MS.gene92701.t1 | MTR_4g039680 | 80.381 | 367 | 72 | 0 | 1 | 367 | 1 | 367 | 0.0 | 625 |
| MS.gene92701.t1 | MTR_4g039740 | 78.202 | 367 | 80 | 0 | 1 | 367 | 1 | 367 | 0.0 | 620 |
| MS.gene92701.t1 | MTR_1g011800 | 56.325 | 332 | 143 | 2 | 32 | 361 | 37 | 368 | 2.22e-133 | 386 |
| MS.gene92701.t1 | MTR_2g103170 | 50.595 | 336 | 160 | 2 | 32 | 361 | 26 | 361 | 2.75e-119 | 350 |
| MS.gene92701.t1 | MTR_2g019600 | 42.416 | 356 | 196 | 2 | 9 | 363 | 18 | 365 | 3.01e-93 | 284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92701.t1 | AT3G08030 | 67.529 | 348 | 112 | 1 | 21 | 367 | 18 | 365 | 1.65e-176 | 495 |
| MS.gene92701.t1 | AT3G08030 | 68.731 | 323 | 100 | 1 | 46 | 367 | 1 | 323 | 8.05e-168 | 471 |
| MS.gene92701.t1 | AT2G41800 | 62.248 | 347 | 127 | 3 | 22 | 364 | 21 | 367 | 1.53e-155 | 442 |
| MS.gene92701.t1 | AT2G41810 | 58.242 | 364 | 151 | 1 | 1 | 363 | 3 | 366 | 8.38e-153 | 435 |
| MS.gene92701.t1 | AT5G25460 | 54.571 | 350 | 158 | 1 | 13 | 361 | 12 | 361 | 7.75e-141 | 405 |
| MS.gene92701.t1 | AT5G11420 | 56.193 | 331 | 144 | 1 | 32 | 361 | 28 | 358 | 1.42e-139 | 401 |
| MS.gene92701.t1 | AT4G32460 | 55.589 | 331 | 146 | 1 | 32 | 361 | 27 | 357 | 7.71e-135 | 389 |
| MS.gene92701.t1 | AT4G32460 | 55.589 | 331 | 146 | 1 | 32 | 361 | 27 | 357 | 7.71e-135 | 389 |
| MS.gene92701.t1 | AT4G32460 | 55.836 | 317 | 139 | 1 | 46 | 361 | 1 | 317 | 1.21e-130 | 377 |
| MS.gene92701.t1 | AT4G32460 | 55.836 | 317 | 139 | 1 | 46 | 361 | 1 | 317 | 1.21e-130 | 377 |
| MS.gene92701.t1 | AT1G80240 | 51.964 | 331 | 158 | 1 | 32 | 361 | 30 | 360 | 1.80e-121 | 355 |
| MS.gene92701.t1 | AT1G29980 | 41.834 | 349 | 193 | 2 | 25 | 363 | 34 | 382 | 3.19e-94 | 287 |
| MS.gene92701.t1 | AT1G29980 | 42.647 | 340 | 185 | 2 | 34 | 363 | 7 | 346 | 4.56e-94 | 286 |
| MS.gene92701.t1 | AT2G34510 | 43.155 | 336 | 185 | 2 | 34 | 363 | 43 | 378 | 8.74e-94 | 286 |
| MS.gene92701.t1 | AT2G34510 | 45.205 | 292 | 154 | 2 | 78 | 363 | 1 | 292 | 1.14e-85 | 262 |
| MS.gene92701.t1 | AT5G14150 | 28.933 | 356 | 218 | 11 | 31 | 367 | 22 | 361 | 3.43e-31 | 122 |
| MS.gene92701.t1 | AT5G14150 | 28.933 | 356 | 218 | 11 | 31 | 367 | 22 | 361 | 3.43e-31 | 122 |
Find 88 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTGGTTGAGTTGAAAAT+TGG | 0.165055 | 3.1:+23178914 | None:intergenic |
| TTGGTATTCTTTAGGTCTTT+AGG | 0.165937 | 3.1:+23180428 | None:intergenic |
| ACCCTTCCCTTCGGATTTAA+AGG | 0.170947 | 3.1:+23178607 | None:intergenic |
| CAACTCTATGCTTTAATTCT+TGG | 0.196335 | 3.1:-23180236 | MS.gene92701:CDS |
| TGGTATTCTTTAGGTCTTTA+GGG | 0.221241 | 3.1:+23180429 | None:intergenic |
| TTTGCAGTTTATCTTCAAAA+TGG | 0.237288 | 3.1:-23180473 | MS.gene92701:intron |
| TTCAATTTCTCAAACAATTA+AGG | 0.237533 | 3.1:-23180270 | MS.gene92701:CDS |
| CAATGAGCTTGGTATTCTTT+AGG | 0.255171 | 3.1:+23180420 | None:intergenic |
| ATGGTCTATTGCAGTTAATT+TGG | 0.269737 | 3.1:-23178969 | MS.gene92701:intron |
| TTCTTTAGGTCTTTAGGGTT+TGG | 0.300993 | 3.1:+23180434 | None:intergenic |
| GTATCACCTTCTGGTATTCT+AGG | 0.307765 | 3.1:+23181377 | None:intergenic |
| AAGCAAAGAACAAAGCTAAA+AGG | 0.333487 | 3.1:+23181423 | None:intergenic |
| CATACTAGAATCGATGATTA+TGG | 0.335052 | 3.1:-23178509 | MS.gene92701:CDS |
| CTTTAATTCTTGGTGCTTCA+AGG | 0.361627 | 3.1:-23180226 | MS.gene92701:CDS |
| CTGTGGTCCTGTTCTTGATC+AGG | 0.368709 | 3.1:-23178480 | MS.gene92701:CDS |
| CGTTGGTTGAGTTGAAAATT+GGG | 0.369942 | 3.1:+23178915 | None:intergenic |
| GGAGCAGTTGAGCTTGTTGC+TGG | 0.378795 | 3.1:-23178773 | MS.gene92701:CDS |
| CCCTTCCCTTCGGATTTAAA+GGG | 0.386595 | 3.1:+23178608 | None:intergenic |
| TTCATTACCTCTTGTGGGCA+TGG | 0.404023 | 3.1:+23179986 | None:intergenic |
| CTAAAGAATACCAAGCTCAT+TGG | 0.415170 | 3.1:-23180419 | MS.gene92701:CDS |
| TTCAATGTCCCATACGGACT+TGG | 0.415478 | 3.1:-23178794 | MS.gene92701:CDS |
| AAACCATTGATTTCCCATTT+CGG | 0.416936 | 3.1:+23180383 | None:intergenic |
| GATCTCTACTCACCACTTCC+TGG | 0.417720 | 3.1:-23178866 | MS.gene92701:CDS |
| TCTTCAAAATGGAAACTTTG+AGG | 0.422549 | 3.1:-23180462 | MS.gene92701:CDS |
| TATGTTTCATTACCTCTTGT+GGG | 0.424229 | 3.1:+23179981 | None:intergenic |
| TCATTACCTCTTGTGGGCAT+GGG | 0.431393 | 3.1:+23179987 | None:intergenic |
| ATCTCTGTGCCACCACAAAC+TGG | 0.431643 | 3.1:-23180176 | MS.gene92701:CDS |
| CAAACATTGTATAGTCTCAA+TGG | 0.435698 | 3.1:-23180140 | MS.gene92701:CDS |
| ATATGTTTCATTACCTCTTG+TGG | 0.447241 | 3.1:+23179980 | None:intergenic |
| TTACCTCTTGTGGGCATGGG+AGG | 0.447604 | 3.1:+23179990 | None:intergenic |
| GAAATGGGAAATCAATGGTT+TGG | 0.456178 | 3.1:-23180381 | MS.gene92701:CDS |
| CAAATTCATATTTAAGCCAC+AGG | 0.459329 | 3.1:+23178446 | None:intergenic |
| TATGAATTTACCCTTCCCTT+CGG | 0.469027 | 3.1:+23178598 | None:intergenic |
| GCATGTGTTCCATGAGTCAC+TGG | 0.474729 | 3.1:+23180314 | None:intergenic |
| TCTACTCACCACTTCCTGGT+TGG | 0.493609 | 3.1:-23178862 | MS.gene92701:CDS |
| CTACCGAAATGGGAAATCAA+TGG | 0.495723 | 3.1:-23180386 | MS.gene92701:CDS |
| AAAGTTCCCTTTAAATCCGA+AGG | 0.502674 | 3.1:-23178614 | MS.gene92701:CDS |
| ACTATAACCTGATCAAGAAC+AGG | 0.503775 | 3.1:+23178473 | None:intergenic |
| TCAACTGCTCCAAGTCCGTA+TGG | 0.504766 | 3.1:+23178785 | None:intergenic |
| AGAGATCTTCTTGTTGTGGT+GGG | 0.513960 | 3.1:+23178882 | None:intergenic |
| GTTGAGTTGAAAATTGGGAA+TGG | 0.524305 | 3.1:+23178920 | None:intergenic |
| CCCTTTAAATCCGAAGGGAA+GGG | 0.525840 | 3.1:-23178608 | MS.gene92701:CDS |
| CATTGATTTCCCATTTCGGT+AGG | 0.526214 | 3.1:+23180387 | None:intergenic |
| TCCCTTTAAATCCGAAGGGA+AGG | 0.529224 | 3.1:-23178609 | MS.gene92701:CDS |
| AATGGACCCTCTTCAAAGCT+AGG | 0.531679 | 3.1:+23178938 | None:intergenic |
| ATTAAAGCATAGAGTTGACC+AGG | 0.539744 | 3.1:+23180242 | None:intergenic |
| GGTTTGGTAGAGTATGTAAC+TGG | 0.542324 | 3.1:-23180365 | MS.gene92701:CDS |
| TAGAGATCTTCTTGTTGTGG+TGG | 0.543583 | 3.1:+23178881 | None:intergenic |
| CAATGGTGATGTTATTGCAT+GGG | 0.551959 | 3.1:-23180123 | MS.gene92701:CDS |
| CAAACAATTAAGGTCAAACC+TGG | 0.553729 | 3.1:-23180260 | MS.gene92701:CDS |
| GAAAAGAGAGACACCGCCAT+TGG | 0.555042 | 3.1:+23181452 | None:intergenic |
| AAAGGAACATCACCAGTTTG+TGG | 0.558532 | 3.1:+23180164 | None:intergenic |
| TACCCTCCCATGCCCACAAG+AGG | 0.564830 | 3.1:-23179993 | MS.gene92701:intron |
| GAGTAGAGATCTTCTTGTTG+TGG | 0.568431 | 3.1:+23178878 | None:intergenic |
| GGAACACATGCTGTGAGGCT+AGG | 0.569631 | 3.1:-23180302 | MS.gene92701:CDS |
| TAGAATGTGAGTCTAGTCCT+TGG | 0.569730 | 3.1:+23178545 | None:intergenic |
| TCGACAATCCAACCAGGAAG+TGG | 0.573834 | 3.1:+23178854 | None:intergenic |
| TGTTCTGAGAATTTGTGCAA+TGG | 0.574231 | 3.1:+23178739 | None:intergenic |
| GTAGGATCTTCTTGAACACC+AGG | 0.574842 | 3.1:+23180056 | None:intergenic |
| ATTGATTTCCCATTTCGGTA+GGG | 0.575983 | 3.1:+23180388 | None:intergenic |
| AGCTTTAAACTTGAAACTCA+CGG | 0.576730 | 3.1:+23178574 | None:intergenic |
| AGACTATACAATGTTTGCAA+AGG | 0.576811 | 3.1:+23180146 | None:intergenic |
| TACCTCTTGTGGGCATGGGA+GGG | 0.579405 | 3.1:+23179991 | None:intergenic |
| ATAGCAATTGCATCAAGAAG+TGG | 0.589206 | 3.1:+23180026 | None:intergenic |
| CAACTGCTCCAAGTCCGTAT+GGG | 0.591383 | 3.1:+23178786 | None:intergenic |
| AAGCATTTCAATGTCCCATA+CGG | 0.596764 | 3.1:-23178800 | MS.gene92701:CDS |
| GTAACTGGTGGTCCTCAACC+AGG | 0.599418 | 3.1:-23180350 | MS.gene92701:CDS |
| TACAAGATCACATTCTCAGT+CGG | 0.599440 | 3.1:-23178701 | MS.gene92701:CDS |
| GATGATTATGGTTCTCTCTG+TGG | 0.604613 | 3.1:-23178497 | MS.gene92701:CDS |
| TCAAGAAGTGGACCACAAGT+AGG | 0.610501 | 3.1:+23180038 | None:intergenic |
| AAGTTCCCTTTAAATCCGAA+GGG | 0.616315 | 3.1:-23178613 | MS.gene92701:CDS |
| TGGTTGTCACGGATCAATGA+TGG | 0.626197 | 3.1:-23178666 | MS.gene92701:CDS |
| GTTCAAGAAGATCCTACTTG+TGG | 0.647438 | 3.1:-23180050 | MS.gene92701:CDS |
| AATGGTGATGTTATTGCATG+GGG | 0.650399 | 3.1:-23180122 | MS.gene92701:CDS |
| CATGTGTTCCATGAGTCACT+GGG | 0.658277 | 3.1:+23180315 | None:intergenic |
| AGTTTAAAGCTATCGCACCA+AGG | 0.662461 | 3.1:-23178562 | MS.gene92701:CDS |
| CTTCAGCCTAGAATACCAGA+AGG | 0.676116 | 3.1:-23181383 | MS.gene92701:intron |
| AAATTCATATTTAAGCCACA+GGG | 0.678492 | 3.1:+23178447 | None:intergenic |
| TCAATGGTGATGTTATTGCA+TGG | 0.678740 | 3.1:-23180124 | MS.gene92701:CDS |
| TTGGTAGAGTATGTAACTGG+TGG | 0.681166 | 3.1:-23180362 | MS.gene92701:CDS |
| GGAACATCACCAGTTTGTGG+TGG | 0.691615 | 3.1:+23180167 | None:intergenic |
| AGAGACTCGACAATCCAACC+AGG | 0.692678 | 3.1:+23178848 | None:intergenic |
| TCAGGTTATAGTGTCCCCTG+TGG | 0.698590 | 3.1:-23178462 | MS.gene92701:CDS |
| TAGGATCTTCTTGAACACCA+GGG | 0.704341 | 3.1:+23180057 | None:intergenic |
| TGGTGGGAGTAAAACACCGT+TGG | 0.711037 | 3.1:+23178898 | None:intergenic |
| CTCATGGAACACATGCTGTG+AGG | 0.712106 | 3.1:-23180307 | MS.gene92701:CDS |
| AATTCATATTTAAGCCACAG+GGG | 0.736491 | 3.1:+23178448 | None:intergenic |
| ACTGGTGGTCCTCAACCAGG+AGG | 0.755609 | 3.1:-23180347 | MS.gene92701:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATAATAAATAAATGAAA+TGG | + | chr3.1:23178567-23178586 | None:intergenic | 10.0% |
| !! | ATTTCTTGTAAAAAAATTGT+GGG | - | chr3.1:23178819-23178838 | MS.gene92701:CDS | 15.0% |
| !! | CAAAAAAATGAATTGAAAAA+GGG | - | chr3.1:23180533-23180552 | MS.gene92701:intron | 15.0% |
| !! | AAAAATCTTATACTAACTGA+TGG | - | chr3.1:23180340-23180359 | MS.gene92701:CDS | 20.0% |
| !! | ATAATCATTAATGGCTATAT+CGG | + | chr3.1:23180919-23180938 | None:intergenic | 20.0% |
| !! | CATTTCTTGTAAAAAAATTG+TGG | - | chr3.1:23178818-23178837 | MS.gene92701:CDS | 20.0% |
| !! | CCAAAAAAATGAATTGAAAA+AGG | - | chr3.1:23180532-23180551 | MS.gene92701:intron | 20.0% |
| !! | TCAAAGTATAGTGAAAAAAA+AGG | + | chr3.1:23178770-23178789 | None:intergenic | 20.0% |
| !! | TTATTCTCTCAAATTACTAT+CGG | + | chr3.1:23179177-23179196 | None:intergenic | 20.0% |
| !! | TTCAATTTCTCAAACAATTA+AGG | - | chr3.1:23179636-23179655 | MS.gene92701:intron | 20.0% |
| !! | TTTGTTAGTACTTTATATGA+GGG | - | chr3.1:23178943-23178962 | MS.gene92701:CDS | 20.0% |
| !!! | AAAAATCTAAGGTACATTAA+AGG | + | chr3.1:23178703-23178722 | None:intergenic | 20.0% |
| !!! | ACTTGATAAGAACTTTTTTT+TGG | - | chr3.1:23180287-23180306 | MS.gene92701:CDS | 20.0% |
| !!! | ATCGACTTCAAATATTTATT+TGG | - | chr3.1:23180576-23180595 | MS.gene92701:intron | 20.0% |
| !!! | ATTAATGAATTTTCAGATGA+AGG | - | chr3.1:23180411-23180430 | MS.gene92701:CDS | 20.0% |
| !!! | ATTTGTTAGTACTTTATATG+AGG | - | chr3.1:23178942-23178961 | MS.gene92701:CDS | 20.0% |
| !!! | ATTTTTCTTAGCATTTCTTT+TGG | - | chr3.1:23180865-23180884 | MS.gene92701:intron | 20.0% |
| !!! | CCTTTTTCAATTCATTTTTT+TGG | + | chr3.1:23180535-23180554 | None:intergenic | 20.0% |
| ! | AGTATTAAACAAAACTGATG+TGG | + | chr3.1:23179952-23179971 | None:intergenic | 25.0% |
| ! | ATCTATGTAATCATATGTGT+CGG | - | chr3.1:23179199-23179218 | MS.gene92701:intron | 25.0% |
| ! | ATGTCAAATAGTAACTATAG+TGG | - | chr3.1:23180164-23180183 | MS.gene92701:CDS | 25.0% |
| ! | CAATAGACCATAATCATTAA+TGG | + | chr3.1:23180928-23180947 | None:intergenic | 25.0% |
| ! | GATATAGCCATTAATGATTA+TGG | - | chr3.1:23180918-23180937 | MS.gene92701:intron | 25.0% |
| ! | GCAAAAAAACATACATTTGA+GGG | + | chr3.1:23180603-23180622 | None:intergenic | 25.0% |
| ! | TCTACATAATTGAACTTAAC+AGG | - | chr3.1:23180263-23180282 | MS.gene92701:CDS | 25.0% |
| ! | TGAACAAAGTTTCAATTTCT+TGG | - | chr3.1:23179004-23179023 | MS.gene92701:intron | 25.0% |
| ! | TGCAAAAAAACATACATTTG+AGG | + | chr3.1:23180604-23180623 | None:intergenic | 25.0% |
| ! | TTTGCAGTTTATCTTCAAAA+TGG | - | chr3.1:23179433-23179452 | MS.gene92701:intron | 25.0% |
| !! | TTTTTCACTATACTTTGATG+TGG | - | chr3.1:23178772-23178791 | MS.gene92701:CDS | 25.0% |
| !!! | AAAAGAGTTGCACTTTTTAA+TGG | - | chr3.1:23180644-23180663 | MS.gene92701:intron | 25.0% |
| AACAGACAATACTTCAACAA+AGG | + | chr3.1:23179107-23179126 | None:intergenic | 30.0% | |
| AAGCAAAGAACAAAGCTAAA+AGG | + | chr3.1:23178486-23178505 | None:intergenic | 30.0% | |
| ACAAGCACTAAATAGCATAT+TGG | + | chr3.1:23180016-23180035 | None:intergenic | 30.0% | |
| ACAGACAATACTTCAACAAA+GGG | + | chr3.1:23179106-23179125 | None:intergenic | 30.0% | |
| ACTTTCATATGTTCCATTGT+TGG | - | chr3.1:23178616-23178635 | MS.gene92701:CDS | 30.0% | |
| AGACTATACAATGTTTGCAA+AGG | + | chr3.1:23179763-23179782 | None:intergenic | 30.0% | |
| ATATGATAGACCAAAGAACA+TGG | + | chr3.1:23180443-23180462 | None:intergenic | 30.0% | |
| ATATGTTTCATTACCTCTTG+TGG | + | chr3.1:23179929-23179948 | None:intergenic | 30.0% | |
| ATGGTCTATTGCAGTTAATT+TGG | - | chr3.1:23180937-23180956 | MS.gene92701:intron | 30.0% | |
| ATGGTTACATTCAATCGTTT+CGG | + | chr3.1:23180775-23180794 | None:intergenic | 30.0% | |
| ATTTACGGTGAAGTTTAAGT+GGG | - | chr3.1:23178859-23178878 | MS.gene92701:CDS | 30.0% | |
| CAAACATTGTATAGTCTCAA+TGG | - | chr3.1:23179766-23179785 | MS.gene92701:intron | 30.0% | |
| CAACTCTATGCTTTAATTCT+TGG | - | chr3.1:23179670-23179689 | MS.gene92701:intron | 30.0% | |
| CATACTAGAATCGATGATTA+TGG | - | chr3.1:23181397-23181416 | MS.gene92701:CDS | 30.0% | |
| GAGAAAAATGTATCCAACAA+TGG | + | chr3.1:23178632-23178651 | None:intergenic | 30.0% | |
| GATAAACTGCAAAGATAAGA+AGG | + | chr3.1:23179426-23179445 | None:intergenic | 30.0% | |
| TAGTAGCTTCAACAAAATCA+TGG | - | chr3.1:23180083-23180102 | MS.gene92701:CDS | 30.0% | |
| TATGTTTCATTACCTCTTGT+GGG | + | chr3.1:23179928-23179947 | None:intergenic | 30.0% | |
| TCTTCAAAATGGAAACTTTG+AGG | - | chr3.1:23179444-23179463 | MS.gene92701:intron | 30.0% | |
| TGGTATTCTTTAGGTCTTTA+GGG | + | chr3.1:23179480-23179499 | None:intergenic | 30.0% | |
| TTAGTGCTTGTTTGATATCA+TGG | - | chr3.1:23180025-23180044 | MS.gene92701:CDS | 30.0% | |
| TTGGTATTCTTTAGGTCTTT+AGG | + | chr3.1:23179481-23179500 | None:intergenic | 30.0% | |
| ! | AAAATTTTCCCTACCGAAAT+GGG | - | chr3.1:23179510-23179529 | MS.gene92701:intron | 30.0% |
| ! | ACAAATTTAGGGTCTCAAAT+AGG | + | chr3.1:23179078-23179097 | None:intergenic | 30.0% |
| ! | GTAACATTGTTATTGCTACA+TGG | + | chr3.1:23178589-23178608 | None:intergenic | 30.0% |
| ! | TATATGTGCTTTGTAGGTTT+TGG | - | chr3.1:23179282-23179301 | MS.gene92701:intron | 30.0% |
| ! | TGAAAAAGGGAGTATGTATT+TGG | - | chr3.1:23180546-23180565 | MS.gene92701:intron | 30.0% |
| ! | TTTTGTAGCACTAACACTTT+AGG | + | chr3.1:23180832-23180851 | None:intergenic | 30.0% |
| !! | AAAAATCCTAGCTTTGAAGA+GGG | - | chr3.1:23180962-23180981 | MS.gene92701:intron | 30.0% |
| !! | AAACCATTGATTTCCCATTT+CGG | + | chr3.1:23179526-23179545 | None:intergenic | 30.0% |
| !! | AGCTTTAAACTTGAAACTCA+CGG | + | chr3.1:23181335-23181354 | None:intergenic | 30.0% |
| !! | GCTTTAAGATCTGTCATTTA+CGG | - | chr3.1:23178844-23178863 | MS.gene92701:CDS | 30.0% |
| !! | TGCTTTTTAACCAAGGAAAA+AGG | + | chr3.1:23179326-23179345 | None:intergenic | 30.0% |
| !! | TTGCTAACGTTTCTTTTTCA+TGG | - | chr3.1:23180507-23180526 | MS.gene92701:intron | 30.0% |
| AAAGTTCCCTTTAAATCCGA+AGG | - | chr3.1:23181292-23181311 | MS.gene92701:intron | 35.0% | |
| AAGCATTTCAATGTCCCATA+CGG | - | chr3.1:23181106-23181125 | MS.gene92701:intron | 35.0% | |
| AAGGATCCAATATCCTTCAA+GGG | + | chr3.1:23180706-23180725 | None:intergenic | 35.0% | |
| AAGTTCCCTTTAAATCCGAA+GGG | - | chr3.1:23181293-23181312 | MS.gene92701:intron | 35.0% | |
| ACTATAACCTGATCAAGAAC+AGG | + | chr3.1:23181436-23181455 | None:intergenic | 35.0% | |
| ATAGCAATTGCATCAAGAAG+TGG | + | chr3.1:23179883-23179902 | None:intergenic | 35.0% | |
| ATGTAGAATCCTAGAAGTGA+AGG | + | chr3.1:23180250-23180269 | None:intergenic | 35.0% | |
| ATTAAAGCATAGAGTTGACC+AGG | + | chr3.1:23179667-23179686 | None:intergenic | 35.0% | |
| CAAACAATTAAGGTCAAACC+TGG | - | chr3.1:23179646-23179665 | MS.gene92701:intron | 35.0% | |
| CAATGAGCTTGGTATTCTTT+AGG | + | chr3.1:23179489-23179508 | None:intergenic | 35.0% | |
| CAGACAATACTTCAACAAAG+GGG | + | chr3.1:23179105-23179124 | None:intergenic | 35.0% | |
| CATTTACGGTGAAGTTTAAG+TGG | - | chr3.1:23178858-23178877 | MS.gene92701:CDS | 35.0% | |
| CTAAAGAATACCAAGCTCAT+TGG | - | chr3.1:23179487-23179506 | MS.gene92701:intron | 35.0% | |
| CTATACTTTGATGTGGTTGT+TGG | - | chr3.1:23178779-23178798 | MS.gene92701:CDS | 35.0% | |
| GAAATGGGAAATCAATGGTT+TGG | - | chr3.1:23179525-23179544 | MS.gene92701:intron | 35.0% | |
| GATTGAATGTAACCATGTGT+TGG | - | chr3.1:23180779-23180798 | MS.gene92701:intron | 35.0% | |
| TAAGGATCCAATATCCTTCA+AGG | + | chr3.1:23180707-23180726 | None:intergenic | 35.0% | |
| TACAAAGCACATATACTCAG+CGG | + | chr3.1:23179277-23179296 | None:intergenic | 35.0% | |
| TACAAGATCACATTCTCAGT+CGG | - | chr3.1:23181205-23181224 | MS.gene92701:intron | 35.0% | |
| TAGATATGAGTATCACCTTC+TGG | + | chr3.1:23178541-23178560 | None:intergenic | 35.0% | |
| TAGCTTCAACAAAATCATGG+TGG | - | chr3.1:23180086-23180105 | MS.gene92701:CDS | 35.0% | |
| TATGAATTTACCCTTCCCTT+CGG | + | chr3.1:23181311-23181330 | None:intergenic | 35.0% | |
| TGTAGAATCCTAGAAGTGAA+GGG | + | chr3.1:23180249-23180268 | None:intergenic | 35.0% | |
| TTAGTTCCCTTGAAGGATAT+TGG | - | chr3.1:23180697-23180716 | MS.gene92701:intron | 35.0% | |
| ! | AAAGGGAGTATGTATTTGGT+TGG | - | chr3.1:23180550-23180569 | MS.gene92701:intron | 35.0% |
| ! | AAAGGGGTGCAACAAATTTA+GGG | + | chr3.1:23179089-23179108 | None:intergenic | 35.0% |
| ! | AAAGTGACTTTTCATAACCC+TGG | - | chr3.1:23179832-23179851 | MS.gene92701:intron | 35.0% |
| ! | AAGGTTGTTTCCATGTTCTT+TGG | - | chr3.1:23180430-23180449 | MS.gene92701:CDS | 35.0% |
| ! | AATGGTGATGTTATTGCATG+GGG | - | chr3.1:23179784-23179803 | MS.gene92701:intron | 35.0% |
| ! | ACTCTATTTAGTTCCCTTGA+AGG | - | chr3.1:23180690-23180709 | MS.gene92701:intron | 35.0% |
| ! | AGTCTTTATGCCTTTTTCCT+TGG | - | chr3.1:23179313-23179332 | MS.gene92701:intron | 35.0% |
| ! | ATTGATTTCCCATTTCGGTA+GGG | + | chr3.1:23179521-23179540 | None:intergenic | 35.0% |
| ! | CAATGGTGATGTTATTGCAT+GGG | - | chr3.1:23179783-23179802 | MS.gene92701:intron | 35.0% |
| ! | CCAATTTTCAACTCAACCAA+CGG | - | chr3.1:23180992-23181011 | MS.gene92701:intron | 35.0% |
| ! | GAAAATTTTCCCTACCGAAA+TGG | - | chr3.1:23179509-23179528 | MS.gene92701:intron | 35.0% |
| ! | GAACAAGATCTGAAGTTGTT+TGG | - | chr3.1:23179385-23179404 | MS.gene92701:intron | 35.0% |
| ! | GGAAAATTTTCCAATGAGCT+TGG | + | chr3.1:23179500-23179519 | None:intergenic | 35.0% |
| ! | TCAATGGTGATGTTATTGCA+TGG | - | chr3.1:23179782-23179801 | MS.gene92701:intron | 35.0% |
| !! | CGTTGGTTGAGTTGAAAATT+GGG | + | chr3.1:23180994-23181013 | None:intergenic | 35.0% |
| !! | CTTTAATTCTTGGTGCTTCA+AGG | - | chr3.1:23179680-23179699 | MS.gene92701:intron | 35.0% |
| !! | GAAAAATCCTAGCTTTGAAG+AGG | - | chr3.1:23180961-23180980 | MS.gene92701:intron | 35.0% |
| !! | GCAACTCTTTTAAGTGTGTT+TGG | + | chr3.1:23180635-23180654 | None:intergenic | 35.0% |
| !! | GTTGAGTTGAAAATTGGGAA+TGG | + | chr3.1:23180989-23181008 | None:intergenic | 35.0% |
| !! | TGTTCTGAGAATTTGTGCAA+TGG | + | chr3.1:23181170-23181189 | None:intergenic | 35.0% |
| !! | TTCTTTAGGTCTTTAGGGTT+TGG | + | chr3.1:23179475-23179494 | None:intergenic | 35.0% |
| AAAGGAACATCACCAGTTTG+TGG | + | chr3.1:23179745-23179764 | None:intergenic | 40.0% | |
| AGCAAGATAGATACTGTGGT+TGG | - | chr3.1:23178884-23178903 | MS.gene92701:CDS | 40.0% | |
| CAACCTTGGTTGAAGAGAAT+GGG | - | chr3.1:23179344-23179363 | MS.gene92701:intron | 40.0% | |
| CACATAACACACCTAAGTAG+TGG | + | chr3.1:23180379-23180398 | None:intergenic | 40.0% | |
| CACTACTTAGGTGTGTTATG+TGG | - | chr3.1:23180377-23180396 | MS.gene92701:CDS | 40.0% | |
| CCTTGGTTAAAAAGCAACCT+TGG | - | chr3.1:23179330-23179349 | MS.gene92701:intron | 40.0% | |
| CTACCGAAATGGGAAATCAA+TGG | - | chr3.1:23179520-23179539 | MS.gene92701:intron | 40.0% | |
| CTATCAGTTCTCCACTACTT+AGG | - | chr3.1:23180365-23180384 | MS.gene92701:CDS | 40.0% | |
| GAGTAGAGATCTTCTTGTTG+TGG | + | chr3.1:23181031-23181050 | None:intergenic | 40.0% | |
| GATCCTTACCTATGAAGCAT+GGG | - | chr3.1:23180719-23180738 | MS.gene92701:intron | 40.0% | |
| GATGATTATGGTTCTCTCTG+TGG | - | chr3.1:23181409-23181428 | MS.gene92701:CDS | 40.0% | |
| GATGCGAAAAATGGTTGTCA+CGG | - | chr3.1:23181229-23181248 | MS.gene92701:intron | 40.0% | |
| GCTGAGTATATGTGCTTTGT+AGG | - | chr3.1:23179276-23179295 | MS.gene92701:intron | 40.0% | |
| GGTAAGCAAGATAGATACTG+TGG | - | chr3.1:23178880-23178899 | MS.gene92701:CDS | 40.0% | |
| GTATCACCTTCTGGTATTCT+AGG | + | chr3.1:23178532-23178551 | None:intergenic | 40.0% | |
| GTTCAAGAAGATCCTACTTG+TGG | - | chr3.1:23179856-23179875 | MS.gene92701:intron | 40.0% | |
| TAGAATGTGAGTCTAGTCCT+TGG | + | chr3.1:23181364-23181383 | None:intergenic | 40.0% | |
| TAGGATCTTCTTGAACACCA+GGG | + | chr3.1:23179852-23179871 | None:intergenic | 40.0% | |
| TTGGTAGAGTATGTAACTGG+TGG | - | chr3.1:23179544-23179563 | MS.gene92701:intron | 40.0% | |
| ! | AGAGATCTTCTTGTTGTGGT+GGG | + | chr3.1:23181027-23181046 | None:intergenic | 40.0% |
| ! | AGTTTAAAGCTATCGCACCA+AGG | - | chr3.1:23181344-23181363 | MS.gene92701:intron | 40.0% |
| ! | ATGTTTTTCCCAGTGACTCA+TGG | - | chr3.1:23179583-23179602 | MS.gene92701:intron | 40.0% |
| ! | CAAAGGGGTGCAACAAATTT+AGG | + | chr3.1:23179090-23179109 | None:intergenic | 40.0% |
| ! | GGTTGTTGGAGTCACTTTAT+GGG | - | chr3.1:23178793-23178812 | MS.gene92701:CDS | 40.0% |
| ! | GGTTTGGTAGAGTATGTAAC+TGG | - | chr3.1:23179541-23179560 | MS.gene92701:intron | 40.0% |
| ! | TAGAGATCTTCTTGTTGTGG+TGG | + | chr3.1:23181028-23181047 | None:intergenic | 40.0% |
| ! | TGGTTGTTGGAGTCACTTTA+TGG | - | chr3.1:23178792-23178811 | MS.gene92701:CDS | 40.0% |
| ! | TTTTGTACCAAGTGTGTGTC+CGG | + | chr3.1:23180142-23180161 | None:intergenic | 40.0% |
| !! | CACATATACTCAGCGGATTA+GGG | + | chr3.1:23179270-23179289 | None:intergenic | 40.0% |
| !! | CATTGATTTCCCATTTCGGT+AGG | + | chr3.1:23179522-23179541 | None:intergenic | 40.0% |
| !! | CCGTTGGTTGAGTTGAAAAT+TGG | + | chr3.1:23180995-23181014 | None:intergenic | 40.0% |
| !!! | CCAAGGTTGCTTTTTAACCA+AGG | + | chr3.1:23179333-23179352 | None:intergenic | 40.0% |
| AAAAACATGCCTCCTGGTTG+AGG | + | chr3.1:23179571-23179590 | None:intergenic | 45.0% | |
| AATGGACCCTCTTCAAAGCT+AGG | + | chr3.1:23180971-23180990 | None:intergenic | 45.0% | |
| ACCCTTCCCTTCGGATTTAA+AGG | + | chr3.1:23181302-23181321 | None:intergenic | 45.0% | |
| ATAGGCATGGTATGTGCATC+AGG | + | chr3.1:23180225-23180244 | None:intergenic | 45.0% | |
| CATGATATCTATCCGACACC+AGG | - | chr3.1:23179241-23179260 | MS.gene92701:intron | 45.0% | |
| CATGTGTTCCATGAGTCACT+GGG | + | chr3.1:23179594-23179613 | None:intergenic | 45.0% | |
| CCCTTCCCTTCGGATTTAAA+GGG | + | chr3.1:23181301-23181320 | None:intergenic | 45.0% | |
| CCCTTTAAATCCGAAGGGAA+GGG | - | chr3.1:23181298-23181317 | MS.gene92701:intron | 45.0% | |
| CGACATGTCTGTATCATGTC+TGG | + | chr3.1:23179151-23179170 | None:intergenic | 45.0% | |
| CTTCAGCCTAGAATACCAGA+AGG | - | chr3.1:23178523-23178542 | MS.gene92701:CDS | 45.0% | |
| GAAGAGAATGGGAGACTTTC+TGG | - | chr3.1:23179355-23179374 | MS.gene92701:intron | 45.0% | |
| GCAACCTTGGTTGAAGAGAA+TGG | - | chr3.1:23179343-23179362 | MS.gene92701:intron | 45.0% | |
| GGATCCTTACCTATGAAGCA+TGG | - | chr3.1:23180718-23180737 | MS.gene92701:intron | 45.0% | |
| GTAGGATCTTCTTGAACACC+AGG | + | chr3.1:23179853-23179872 | None:intergenic | 45.0% | |
| TAGGCATGGTATGTGCATCA+GGG | + | chr3.1:23180224-23180243 | None:intergenic | 45.0% | |
| TCAAGAAGTGGACCACAAGT+AGG | + | chr3.1:23179871-23179890 | None:intergenic | 45.0% | |
| TCAGTCGGAGATGCGAAAAA+TGG | - | chr3.1:23181220-23181239 | MS.gene92701:intron | 45.0% | |
| TCATTACCTCTTGTGGGCAT+GGG | + | chr3.1:23179922-23179941 | None:intergenic | 45.0% | |
| TCCCTTTAAATCCGAAGGGA+AGG | - | chr3.1:23181297-23181316 | MS.gene92701:intron | 45.0% | |
| TCTCCCATTCTCTTCAACCA+AGG | + | chr3.1:23179350-23179369 | None:intergenic | 45.0% | |
| TGGTTGTCACGGATCAATGA+TGG | - | chr3.1:23181240-23181259 | MS.gene92701:intron | 45.0% | |
| TGTATGTGCCCATGCTTCAT+AGG | + | chr3.1:23180730-23180749 | None:intergenic | 45.0% | |
| TTCAATGTCCCATACGGACT+TGG | - | chr3.1:23181112-23181131 | MS.gene92701:intron | 45.0% | |
| TTCATTACCTCTTGTGGGCA+TGG | + | chr3.1:23179923-23179942 | None:intergenic | 45.0% | |
| ! | ATCCTAGAAGTGAAGGGCAT+AGG | + | chr3.1:23180243-23180262 | None:intergenic | 45.0% |
| ! | GCACATATACTCAGCGGATT+AGG | + | chr3.1:23179271-23179290 | None:intergenic | 45.0% |
| !! | CGGTGGGTTGGACAAAATTA+TGG | + | chr3.1:23180114-23180133 | None:intergenic | 45.0% |
| !! | ATTAAAAAAAAAAAAATCTA+AGG | + | chr3.1:23178714-23178733 | None:intergenic | 5.0% |
| ACTGGGAAAAACATGCCTCC+TGG | + | chr3.1:23179577-23179596 | None:intergenic | 50.0% | |
| AGAGACTCGACAATCCAACC+AGG | + | chr3.1:23181061-23181080 | None:intergenic | 50.0% | |
| ATCTCTGTGCCACCACAAAC+TGG | - | chr3.1:23179730-23179749 | MS.gene92701:intron | 50.0% | |
| CAACTGCTCCAAGTCCGTAT+GGG | + | chr3.1:23181123-23181142 | None:intergenic | 50.0% | |
| CAAGTGTGTGTCCGGTATCA+CGG | + | chr3.1:23180134-23180153 | None:intergenic | 50.0% | |
| CTCATGGAACACATGCTGTG+AGG | - | chr3.1:23179599-23179618 | MS.gene92701:intron | 50.0% | |
| CTGTGGTCCTGTTCTTGATC+AGG | - | chr3.1:23181426-23181445 | MS.gene92701:CDS | 50.0% | |
| GATCTCTACTCACCACTTCC+TGG | - | chr3.1:23181040-23181059 | MS.gene92701:intron | 50.0% | |
| GCATGTGTTCCATGAGTCAC+TGG | + | chr3.1:23179595-23179614 | None:intergenic | 50.0% | |
| GGAACATCACCAGTTTGTGG+TGG | + | chr3.1:23179742-23179761 | None:intergenic | 50.0% | |
| GTGCCCATGCTTCATAGGTA+AGG | + | chr3.1:23180725-23180744 | None:intergenic | 50.0% | |
| TCAACTGCTCCAAGTCCGTA+TGG | + | chr3.1:23181124-23181143 | None:intergenic | 50.0% | |
| TCAGGTTATAGTGTCCCCTG+TGG | - | chr3.1:23181444-23181463 | MS.gene92701:CDS | 50.0% | |
| TCGACAATCCAACCAGGAAG+TGG | + | chr3.1:23181055-23181074 | None:intergenic | 50.0% | |
| TCTACTCACCACTTCCTGGT+TGG | - | chr3.1:23181044-23181063 | MS.gene92701:intron | 50.0% | |
| TCTGACACGACACCAACACA+TGG | + | chr3.1:23180794-23180813 | None:intergenic | 50.0% | |
| TGCCTATGCCCTTCACTTCT+AGG | - | chr3.1:23180238-23180257 | MS.gene92701:CDS | 50.0% | |
| TGGTGGGAGTAAAACACCGT+TGG | + | chr3.1:23181011-23181030 | None:intergenic | 50.0% | |
| ! | AGAAGTGAAGGGCATAGGCA+TGG | + | chr3.1:23180238-23180257 | None:intergenic | 50.0% |
| ! | TGGGAGACTTTCTGGTGTAC+TGG | - | chr3.1:23179363-23179382 | MS.gene92701:intron | 50.0% |
| !! | GTCGGTGTTGTGTCATGTGT+CGG | - | chr3.1:23179217-23179236 | MS.gene92701:intron | 50.0% |
| !! | TGTGTTGGTGTCGTGTCAGA+TGG | - | chr3.1:23180794-23180813 | MS.gene92701:intron | 50.0% |
| CGTGATACCGGACACACACT+TGG | - | chr3.1:23180132-23180151 | MS.gene92701:CDS | 55.0% | |
| GGAACACATGCTGTGAGGCT+AGG | - | chr3.1:23179604-23179623 | MS.gene92701:intron | 55.0% | |
| GTAACTGGTGGTCCTCAACC+AGG | - | chr3.1:23179556-23179575 | MS.gene92701:intron | 55.0% | |
| TACCTCTTGTGGGCATGGGA+GGG | + | chr3.1:23179918-23179937 | None:intergenic | 55.0% | |
| TGTCCAACCCACCGTGATAC+CGG | - | chr3.1:23180120-23180139 | MS.gene92701:CDS | 55.0% | |
| TGTGTGTCCGGTATCACGGT+GGG | + | chr3.1:23180130-23180149 | None:intergenic | 55.0% | |
| TTACCTCTTGTGGGCATGGG+AGG | + | chr3.1:23179919-23179938 | None:intergenic | 55.0% | |
| ! | GGATTAGGGTGTCCTGGTGT+CGG | + | chr3.1:23179256-23179275 | None:intergenic | 55.0% |
| !! | GGAGCAGTTGAGCTTGTTGC+TGG | - | chr3.1:23181133-23181152 | MS.gene92701:intron | 55.0% |
| ACTGGTGGTCCTCAACCAGG+AGG | - | chr3.1:23179559-23179578 | MS.gene92701:intron | 60.0% | |
| GTGTGTGTCCGGTATCACGG+TGG | + | chr3.1:23180131-23180150 | None:intergenic | 60.0% | |
| TACCCTCCCATGCCCACAAG+AGG | - | chr3.1:23179913-23179932 | MS.gene92701:intron | 60.0% | |
| TGTCCGGTATCACGGTGGGT+TGG | + | chr3.1:23180126-23180145 | None:intergenic | 60.0% | |
| !! | CTCAGCGGATTAGGGTGTCC+TGG | + | chr3.1:23179262-23179281 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 23178457 | 23181471 | 23178457 | ID=MS.gene92701 |
| chr3.1 | mRNA | 23178457 | 23181471 | 23178457 | ID=MS.gene92701.t1;Parent=MS.gene92701 |
| chr3.1 | exon | 23181384 | 23181471 | 23181384 | ID=MS.gene92701.t1.exon1;Parent=MS.gene92701.t1 |
| chr3.1 | CDS | 23181384 | 23181471 | 23181384 | ID=cds.MS.gene92701.t1;Parent=MS.gene92701.t1 |
| chr3.1 | exon | 23179994 | 23180488 | 23179994 | ID=MS.gene92701.t1.exon2;Parent=MS.gene92701.t1 |
| chr3.1 | CDS | 23179994 | 23180488 | 23179994 | ID=cds.MS.gene92701.t1;Parent=MS.gene92701.t1 |
| chr3.1 | exon | 23178457 | 23178977 | 23178457 | ID=MS.gene92701.t1.exon3;Parent=MS.gene92701.t1 |
| chr3.1 | CDS | 23178457 | 23178977 | 23178457 | ID=cds.MS.gene92701.t1;Parent=MS.gene92701.t1 |
| Gene Sequence |
| Protein sequence |
