Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057990.t1 | XP_003598897.1 | 98.3 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 9.20E-55 | 222.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057990.t1 | Q39080 | 90.4 | 115 | 11 | 0 | 1 | 115 | 1 | 115 | 8.2e-52 | 204.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057990.t1 | G7J1N4 | 98.3 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 6.6e-55 | 222.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050667 | MS.gene057990 | 0.805237 | 1.47E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene057990 | 0.806726 | 7.15E-50 | -1.69E-46 |
| MS.gene054662 | MS.gene057990 | 0.803867 | 2.84E-49 | -1.69E-46 |
| MS.gene05652 | MS.gene057990 | 0.802614 | 5.16E-49 | -1.69E-46 |
| MS.gene057988 | MS.gene057990 | 0.943452 | 1.17E-102 | -1.69E-46 |
| MS.gene057990 | MS.gene070324 | 0.813708 | 2.23E-51 | -1.69E-46 |
| MS.gene057990 | MS.gene22718 | 0.810376 | 1.19E-50 | -1.69E-46 |
| MS.gene057990 | MS.gene25238 | 0.809231 | 2.10E-50 | -1.69E-46 |
| MS.gene057990 | MS.gene29215 | 0.808026 | 3.79E-50 | -1.69E-46 |
| MS.gene057990 | MS.gene40797 | 0.813067 | 3.09E-51 | -1.69E-46 |
| MS.gene057990 | MS.gene46636 | 0.816276 | 6.01E-52 | -1.69E-46 |
| MS.gene057990 | MS.gene50921 | 0.960826 | 5.35E-119 | -1.69E-46 |
| MS.gene057990 | MS.gene50925 | 0.958147 | 4.83E-116 | -1.69E-46 |
| MS.gene057990 | MS.gene55890 | 0.800279 | 1.55E-48 | -1.69E-46 |
| MS.gene057990 | MS.gene58738 | 0.816147 | 6.42E-52 | -1.69E-46 |
| MS.gene057990 | MS.gene60269 | 0.813153 | 2.96E-51 | -1.69E-46 |
| MS.gene057990 | MS.gene66273 | 0.818256 | 2.16E-52 | -1.69E-46 |
| MS.gene057990 | MS.gene68832 | 0.821391 | 4.14E-53 | -1.69E-46 |
| MS.gene057990 | MS.gene72164 | 0.80429 | 2.32E-49 | -1.69E-46 |
| MS.gene057990 | MS.gene75915 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene057990 | MS.gene77904 | 0.808761 | 2.64E-50 | -1.69E-46 |
| MS.gene057990 | MS.gene91871 | 0.81753 | 3.14E-52 | -1.69E-46 |
| MS.gene057990 | MS.gene92701 | 0.805411 | 1.35E-49 | -1.69E-46 |
| MS.gene057990 | MS.gene95672 | 0.823299 | 1.49E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003786 | MS.gene057990 | PPI |
| MS.gene001011 | MS.gene057990 | PPI |
| MS.gene014312 | MS.gene057990 | PPI |
| MS.gene057990 | MS.gene50024 | PPI |
| MS.gene005960 | MS.gene057990 | PPI |
| MS.gene50925 | MS.gene057990 | PPI |
| MS.gene057990 | MS.gene54807 | PPI |
| MS.gene50921 | MS.gene057990 | PPI |
| MS.gene057990 | MS.gene069988 | PPI |
| MS.gene34049 | MS.gene057990 | PPI |
| MS.gene057990 | MS.gene37721 | PPI |
| MS.gene057990 | MS.gene45709 | PPI |
| MS.gene05210 | MS.gene057990 | PPI |
| MS.gene057988 | MS.gene057990 | PPI |
| MS.gene014310 | MS.gene057990 | PPI |
| MS.gene056676 | MS.gene057990 | PPI |
| MS.gene057990 | MS.gene039901 | PPI |
| MS.gene057990 | MS.gene064868 | PPI |
| MS.gene057990 | MS.gene057988 | PPI |
| MS.gene057990 | MS.gene66827 | PPI |
| MS.gene057990 | MS.gene57836 | PPI |
| MS.gene039903 | MS.gene057990 | PPI |
| MS.gene057990 | MS.gene50052 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057990.t1 | MTR_3g023120 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 3.12e-81 | 233 |
| MS.gene057990.t1 | MTR_5g029240 | 93.694 | 111 | 7 | 0 | 5 | 115 | 14 | 124 | 8.59e-74 | 215 |
| MS.gene057990.t1 | MTR_3g023120 | 97.727 | 88 | 2 | 0 | 1 | 88 | 1 | 88 | 1.30e-59 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057990.t1 | AT1G32210 | 90.435 | 115 | 11 | 0 | 1 | 115 | 1 | 115 | 2.03e-74 | 216 |
| MS.gene057990.t1 | AT2G35520 | 86.957 | 115 | 15 | 0 | 1 | 115 | 1 | 115 | 2.63e-71 | 208 |
| MS.gene057990.t1 | AT2G35520 | 86.957 | 115 | 15 | 0 | 1 | 115 | 1 | 115 | 2.63e-71 | 208 |
| MS.gene057990.t1 | AT2G35520 | 86.207 | 116 | 15 | 1 | 1 | 115 | 1 | 116 | 1.58e-69 | 204 |
| MS.gene057990.t1 | AT1G32210 | 90.909 | 88 | 8 | 0 | 1 | 88 | 1 | 88 | 1.10e-53 | 164 |
Find 31 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAACTCCTTCCTTTC+AGG | 0.114983 | 3.3:-35016636 | MS.gene057990:CDS |
| TTGCGTAGGGACTGCAGTTC+TGG | 0.282207 | 3.3:-35016604 | MS.gene057990:CDS |
| TTGGTGATCATGAACTTTCT+TGG | 0.304837 | 3.3:-35016071 | MS.gene057990:CDS |
| CCTTGTTCTCTTTATTCACT+TGG | 0.305994 | 3.3:+35016397 | None:intergenic |
| CCTGAAAGGAAGGAGTTAAA+TGG | 0.336746 | 3.3:+35016636 | None:intergenic |
| AAGATCTTCTCCGCACTCTT+TGG | 0.356756 | 3.3:-35018058 | MS.gene057990:CDS |
| CTGCAATGTGGTGCTCCATT+TGG | 0.370798 | 3.3:-35016090 | MS.gene057990:CDS |
| CCAGGTAGTTTACATGGCTT+TGG | 0.389862 | 3.3:-35016670 | MS.gene057990:intron |
| TCTCTTTATTCACTTGGATC+CGG | 0.452230 | 3.3:+35016403 | None:intergenic |
| AAAATCTGCAAAAGCGCGCT+CGG | 0.463481 | 3.3:+35016118 | None:intergenic |
| TAAAGAGAACAAGGAATTCA+AGG | 0.465642 | 3.3:-35016388 | MS.gene057990:intron |
| AGGAACAACCTTGAGATTTG+TGG | 0.468795 | 3.3:+35018016 | None:intergenic |
| TGTCTTCACTGCCCTCCTCC+AGG | 0.470127 | 3.3:-35017901 | MS.gene057990:intron |
| GGAACAACCTTGAGATTTGT+GGG | 0.478791 | 3.3:+35018017 | None:intergenic |
| TAATGACCAGGTAGTTTACA+TGG | 0.487275 | 3.3:-35016676 | MS.gene057990:intron |
| TCAGGCGTACTTTCTTGCGT+AGG | 0.489843 | 3.3:-35016618 | MS.gene057990:CDS |
| CAGGCGTACTTTCTTGCGTA+GGG | 0.494144 | 3.3:-35016617 | MS.gene057990:CDS |
| AAATCTGCAAAAGCGCGCTC+GGG | 0.496102 | 3.3:+35016119 | None:intergenic |
| GGTAGTTTACATGGCTTTGG+TGG | 0.498163 | 3.3:-35016667 | MS.gene057990:CDS |
| CGCAAGAAAGTACGCCTGAA+AGG | 0.506042 | 3.3:+35016622 | None:intergenic |
| GAAAGTTCATGATCACCAAA+TGG | 0.518501 | 3.3:+35016075 | None:intergenic |
| GGAAAGGAAGTACCTGGAGG+AGG | 0.546155 | 3.3:+35017889 | None:intergenic |
| GTAGGGACTGCAGTTCTGGC+TGG | 0.550415 | 3.3:-35016600 | MS.gene057990:intron |
| AGAAAGTACGCCTGAAAGGA+AGG | 0.558835 | 3.3:+35016626 | None:intergenic |
| CCAAGTGAATAAAGAGAACA+AGG | 0.563011 | 3.3:-35016397 | MS.gene057990:CDS |
| GAAAGGAAGTACCTGGAGGA+GGG | 0.586265 | 3.3:+35017890 | None:intergenic |
| GATGGTGAAGTCTACTGCTA+AGG | 0.589667 | 3.3:-35018087 | MS.gene057990:CDS |
| GTAGTTTACATGGCTTTGGT+GGG | 0.595250 | 3.3:-35016666 | MS.gene057990:CDS |
| AACAACCTTGAGATTTGTGG+GGG | 0.618905 | 3.3:+35018019 | None:intergenic |
| GAACAACCTTGAGATTTGTG+GGG | 0.633022 | 3.3:+35018018 | None:intergenic |
| AATAAGCAGACCAAAGAGTG+CGG | 0.691016 | 3.3:+35018048 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTAAAAAATTAGACTT+GGG | + | chr3.3:35017323-35017342 | None:intergenic | 15.0% |
| !!! | TACAAGTGAAATTAATATTT+TGG | - | chr3.3:35017349-35017368 | MS.gene057990:intron | 15.0% |
| !!! | TGTTTTTAAAAAATTAGACT+TGG | + | chr3.3:35017324-35017343 | None:intergenic | 15.0% |
| !! | AATTCCTAATTCCTAATTAA+TGG | + | chr3.3:35017025-35017044 | None:intergenic | 20.0% |
| !! | TCATTAAACTAGAATCTAAA+AGG | + | chr3.3:35017297-35017316 | None:intergenic | 20.0% |
| !! | TTGTATTAATGTCATTATTC+TGG | - | chr3.3:35017853-35017872 | MS.gene057990:intron | 20.0% |
| !!! | AAATCAATCTTTGATTTTTG+TGG | - | chr3.3:35016355-35016374 | MS.gene057990:intron | 20.0% |
| !!! | GAAATTAATATTTTGGTGAT+GGG | - | chr3.3:35017356-35017375 | MS.gene057990:intron | 20.0% |
| !!! | TGAAATTAATATTTTGGTGA+TGG | - | chr3.3:35017355-35017374 | MS.gene057990:intron | 20.0% |
| ! | AACATCATAATACACAAGAA+AGG | + | chr3.3:35017798-35017817 | None:intergenic | 25.0% |
| ! | AAGATACAAGAAATATTCAG+AGG | + | chr3.3:35017904-35017923 | None:intergenic | 25.0% |
| ! | ACTAATCTGATCATGATATT+CGG | + | chr3.3:35016386-35016405 | None:intergenic | 25.0% |
| ! | AGAGTAAGATTAAAAATTGG+AGG | + | chr3.3:35017259-35017278 | None:intergenic | 25.0% |
| ! | ATGATTGGTATTTCATATAC+AGG | - | chr3.3:35018003-35018022 | MS.gene057990:intron | 25.0% |
| ! | CTTTATGTGTGTTATGTAAT+TGG | + | chr3.3:35016562-35016581 | None:intergenic | 25.0% |
| ! | GAGTAAGATTAAAAATTGGA+GGG | + | chr3.3:35017258-35017277 | None:intergenic | 25.0% |
| ! | GGTAGAGTAAGATTAAAAAT+TGG | + | chr3.3:35017262-35017281 | None:intergenic | 25.0% |
| ! | TATATGCAATAACATGTGTT+TGG | + | chr3.3:35016458-35016477 | None:intergenic | 25.0% |
| ! | TCTAAAAGGATAGTATTATC+TGG | + | chr3.3:35017283-35017302 | None:intergenic | 25.0% |
| ! | TGCAGGAAATACAAATATAT+AGG | - | chr3.3:35016860-35016879 | MS.gene057990:intron | 25.0% |
| !! | ATCTAGATAACAGTTTCTTT+TGG | + | chr3.3:35016586-35016605 | None:intergenic | 25.0% |
| !! | GATTGATTTACTAATGTTAC+AGG | + | chr3.3:35016344-35016363 | None:intergenic | 25.0% |
| !! | TCTAGATAACAGTTTCTTTT+GGG | + | chr3.3:35016585-35016604 | None:intergenic | 25.0% |
| !! | TTTTCATTTTCTTAATGACC+AGG | - | chr3.3:35017465-35017484 | MS.gene057990:intron | 25.0% |
| !!! | ATATTTTTGTAGAAATGCAG+AGG | + | chr3.3:35016170-35016189 | None:intergenic | 25.0% |
| !!! | TATTTTTGTAGAAATGCAGA+GGG | + | chr3.3:35016169-35016188 | None:intergenic | 25.0% |
| AAAACAAAGTTAACTTCCAC+GGG | - | chr3.3:35016806-35016825 | MS.gene057990:intron | 30.0% | |
| AAACTTATGCATATGAACCT+AGG | + | chr3.3:35017676-35017695 | None:intergenic | 30.0% | |
| AACTGGTAAAAAATAGAGGA+TGG | + | chr3.3:35017725-35017744 | None:intergenic | 30.0% | |
| AAGTAAGATCACAAATGTTG+TGG | + | chr3.3:35017198-35017217 | None:intergenic | 30.0% | |
| AATTCACCAAATCATCTTGA+AGG | - | chr3.3:35016686-35016705 | MS.gene057990:intron | 30.0% | |
| ATCTTGAAGGAAGTAGATTA+GGG | - | chr3.3:35016699-35016718 | MS.gene057990:intron | 30.0% | |
| ATGTCTGGAAGGATATTATT+TGG | + | chr3.3:35017223-35017242 | None:intergenic | 30.0% | |
| CAAAACAAAGTTAACTTCCA+CGG | - | chr3.3:35016805-35016824 | MS.gene057990:intron | 30.0% | |
| CTTGACTGAACAAAATAGAA+AGG | - | chr3.3:35017927-35017946 | MS.gene057990:CDS | 30.0% | |
| GAAATGATGAAACAATGTGT+TGG | - | chr3.3:35017949-35017968 | MS.gene057990:intron | 30.0% | |
| GACAAACTGGTAAAAAATAG+AGG | + | chr3.3:35017729-35017748 | None:intergenic | 30.0% | |
| GATAGATTCTTACAGATGAT+TGG | - | chr3.3:35017988-35018007 | MS.gene057990:intron | 30.0% | |
| GTGAAGAGTTCTATGATATT+TGG | + | chr3.3:35017154-35017173 | None:intergenic | 30.0% | |
| TAAAGAGAACAAGGAATTCA+AGG | - | chr3.3:35017765-35017784 | MS.gene057990:intron | 30.0% | |
| TTAGAAATTGAAGCAAGGAA+AGG | + | chr3.3:35016283-35016302 | None:intergenic | 30.0% | |
| ! | GATCTTTAGAAATTGAAGCA+AGG | + | chr3.3:35016288-35016307 | None:intergenic | 30.0% |
| !! | ATCATTGATTTGAGATCAGA+CGG | - | chr3.3:35017059-35017078 | MS.gene057990:intron | 30.0% |
| !!! | AGTTAACTTTGTTTTGCTGA+CGG | + | chr3.3:35016801-35016820 | None:intergenic | 30.0% |
| !!! | ATATTTTGGTGATGGGTTAA+AGG | - | chr3.3:35017363-35017382 | MS.gene057990:intron | 30.0% |
| !!! | ATTTTTTACCAGTTTGTCTC+CGG | - | chr3.3:35017731-35017750 | MS.gene057990:intron | 30.0% |
| AATCTGATCATGATATTCGG+AGG | + | chr3.3:35016383-35016402 | None:intergenic | 35.0% | |
| ACAAATATATAGGCTGCACA+TGG | - | chr3.3:35016870-35016889 | MS.gene057990:intron | 35.0% | |
| ATTCCTCAATAATGTCTGGA+AGG | + | chr3.3:35017234-35017253 | None:intergenic | 35.0% | |
| CAGATTTGTGAAGTAACTTC+TGG | + | chr3.3:35016508-35016527 | None:intergenic | 35.0% | |
| CATCTTGAAGGAAGTAGATT+AGG | - | chr3.3:35016698-35016717 | MS.gene057990:intron | 35.0% | |
| CCAAGTGAATAAAGAGAACA+AGG | - | chr3.3:35017756-35017775 | MS.gene057990:intron | 35.0% | |
| CCAGCCATTAATTAGGAATT+AGG | - | chr3.3:35017018-35017037 | MS.gene057990:intron | 35.0% | |
| CCTAATTCCTAATTAATGGC+TGG | + | chr3.3:35017021-35017040 | None:intergenic | 35.0% | |
| CCTTGTTCTCTTTATTCACT+TGG | + | chr3.3:35017759-35017778 | None:intergenic | 35.0% | |
| CTAAATGAAAAGCCAAAGCA+GGG | + | chr3.3:35016206-35016225 | None:intergenic | 35.0% | |
| CTACTTCCTTCAAGATGATT+TGG | + | chr3.3:35016695-35016714 | None:intergenic | 35.0% | |
| GAAAGTTCATGATCACCAAA+TGG | + | chr3.3:35018081-35018100 | None:intergenic | 35.0% | |
| GTGAATCGAATAGGTTACAT+AGG | + | chr3.3:35016769-35016788 | None:intergenic | 35.0% | |
| TAACTTCAACATCAACCTAC+TGG | + | chr3.3:35017393-35017412 | None:intergenic | 35.0% | |
| TAATGACCAGGTAGTTTACA+TGG | - | chr3.3:35017477-35017496 | MS.gene057990:intron | 35.0% | |
| TATCCTTCCAGACATTATTG+AGG | - | chr3.3:35017228-35017247 | MS.gene057990:intron | 35.0% | |
| TCTAAATGAAAAGCCAAAGC+AGG | + | chr3.3:35016207-35016226 | None:intergenic | 35.0% | |
| TCTCTTTATTCACTTGGATC+CGG | + | chr3.3:35017753-35017772 | None:intergenic | 35.0% | |
| TGTGACACGGTAAATAATCT+GGG | + | chr3.3:35017085-35017104 | None:intergenic | 35.0% | |
| TTACTTCACAAATCTGCAGA+AGG | - | chr3.3:35016512-35016531 | MS.gene057990:intron | 35.0% | |
| TTGGCATTAAATGTGTGACA+CGG | + | chr3.3:35017098-35017117 | None:intergenic | 35.0% | |
| ! | AGATTTTGTTCTCTGCAATG+TGG | - | chr3.3:35018051-35018070 | MS.gene057990:CDS | 35.0% |
| ! | GATCAGATTAGTCCAAATCA+GGG | - | chr3.3:35016394-35016413 | MS.gene057990:CDS | 35.0% |
| ! | GTTTCTTGGATTAGGATTCT+TGG | + | chr3.3:35017117-35017136 | None:intergenic | 35.0% |
| ! | TGATCAGATTAGTCCAAATC+AGG | - | chr3.3:35016393-35016412 | MS.gene057990:CDS | 35.0% |
| ! | TTGGTGATCATGAACTTTCT+TGG | - | chr3.3:35018082-35018101 | MS.gene057990:CDS | 35.0% |
| !! | ACAATAGTTCTAATCTGCCT+AGG | - | chr3.3:35017656-35017675 | MS.gene057990:intron | 35.0% |
| !! | GATGATTTGGTGAATTGTGA+TGG | + | chr3.3:35016682-35016701 | None:intergenic | 35.0% |
| !! | TATTTTTGCTAACCCTGCTT+TGG | - | chr3.3:35016191-35016210 | MS.gene057990:intron | 35.0% |
| AACAACCTTGAGATTTGTGG+GGG | + | chr3.3:35016137-35016156 | None:intergenic | 40.0% | |
| AATAAGCAGACCAAAGAGTG+CGG | + | chr3.3:35016108-35016127 | None:intergenic | 40.0% | |
| AGGAACAACCTTGAGATTTG+TGG | + | chr3.3:35016140-35016159 | None:intergenic | 40.0% | |
| ATAAAATATCCCAGCTGGCA+AGG | + | chr3.3:35016949-35016968 | None:intergenic | 40.0% | |
| ATATACCTGAATACGCTAGG+GGG | - | chr3.3:35016913-35016932 | MS.gene057990:intron | 40.0% | |
| ATATCCGCAATCGCATATTC+TGG | + | chr3.3:35016897-35016916 | None:intergenic | 40.0% | |
| ATCGAATAGGTTACATAGGC+AGG | + | chr3.3:35016765-35016784 | None:intergenic | 40.0% | |
| ATGATATTTGGACTCCAGTG+AGG | + | chr3.3:35017142-35017161 | None:intergenic | 40.0% | |
| ATTCCTAATTAATGGCTGGC+AGG | + | chr3.3:35017017-35017036 | None:intergenic | 40.0% | |
| CCATTTAACTCCTTCCTTTC+AGG | - | chr3.3:35017517-35017536 | MS.gene057990:intron | 40.0% | |
| CCTCTTTCTTCCTTTGCTTT+GGG | - | chr3.3:35016978-35016997 | MS.gene057990:intron | 40.0% | |
| CCTGAAAGGAAGGAGTTAAA+TGG | + | chr3.3:35017520-35017539 | None:intergenic | 40.0% | |
| CTCACATAAAATATCCCAGC+TGG | + | chr3.3:35016954-35016973 | None:intergenic | 40.0% | |
| GAACAACCTTGAGATTTGTG+GGG | + | chr3.3:35016138-35016157 | None:intergenic | 40.0% | |
| GATATACCTGAATACGCTAG+GGG | - | chr3.3:35016912-35016931 | MS.gene057990:intron | 40.0% | |
| GCAAGTTCTCATACATTTCC+TGG | + | chr3.3:35016738-35016757 | None:intergenic | 40.0% | |
| GGAACAACCTTGAGATTTGT+GGG | + | chr3.3:35016139-35016158 | None:intergenic | 40.0% | |
| GGATATACCTGAATACGCTA+GGG | - | chr3.3:35016911-35016930 | MS.gene057990:intron | 40.0% | |
| GGGAATTCCTCAATAATGTC+TGG | + | chr3.3:35017238-35017257 | None:intergenic | 40.0% | |
| GTGTGACACGGTAAATAATC+TGG | + | chr3.3:35017086-35017105 | None:intergenic | 40.0% | |
| GTGTGCATAAATTGCATAGC+TGG | + | chr3.3:35017614-35017633 | None:intergenic | 40.0% | |
| TAAAATATCCCAGCTGGCAA+GGG | + | chr3.3:35016948-35016967 | None:intergenic | 40.0% | |
| TATCCGCAATCGCATATTCT+GGG | + | chr3.3:35016896-35016915 | None:intergenic | 40.0% | |
| TGACATTGTGCTGAATTTCC+CGG | - | chr3.3:35016481-35016500 | MS.gene057990:intron | 40.0% | |
| TGCGTGCAATTTCTAATGCA+AGG | + | chr3.3:35016610-35016629 | None:intergenic | 40.0% | |
| TTACCTGCCAGCCATTAATT+AGG | - | chr3.3:35017011-35017030 | MS.gene057990:intron | 40.0% | |
| TTCGACCAATGATTCGAGAT+TGG | - | chr3.3:35016649-35016668 | MS.gene057990:CDS | 40.0% | |
| TTGTATTTCCTGCAATGTCC+AGG | + | chr3.3:35016854-35016873 | None:intergenic | 40.0% | |
| TTGTGAAGTAACTTCTGGAC+CGG | + | chr3.3:35016503-35016522 | None:intergenic | 40.0% | |
| !! | GTAGTTTACATGGCTTTGGT+GGG | - | chr3.3:35017487-35017506 | MS.gene057990:intron | 40.0% |
| AAGATCTTCTCCGCACTCTT+TGG | - | chr3.3:35016095-35016114 | MS.gene057990:CDS | 45.0% | |
| AATCCAAGAAACTGCCTCAC+TGG | - | chr3.3:35017125-35017144 | MS.gene057990:intron | 45.0% | |
| ACCAGGAGAGTGAATCGAAT+AGG | + | chr3.3:35016778-35016797 | None:intergenic | 45.0% | |
| ACCTATTCGATTCACTCTCC+TGG | - | chr3.3:35016774-35016793 | MS.gene057990:intron | 45.0% | |
| AGAAATGCAGAGGGAAAGAG+AGG | + | chr3.3:35016160-35016179 | None:intergenic | 45.0% | |
| AGGCACTAGAAACATGGACA+CGG | - | chr3.3:35016532-35016551 | MS.gene057990:intron | 45.0% | |
| ATAGGTTACATAGGCAGGAC+AGG | + | chr3.3:35016760-35016779 | None:intergenic | 45.0% | |
| ATTAATGGCTGGCAGGTAAC+AGG | + | chr3.3:35017010-35017029 | None:intergenic | 45.0% | |
| CACAAATGTTGTGGTGATCG+AGG | + | chr3.3:35017189-35017208 | None:intergenic | 45.0% | |
| CCAAAGCCATGTAAACTACC+TGG | + | chr3.3:35017486-35017505 | None:intergenic | 45.0% | |
| CCAGGTAGTTTACATGGCTT+TGG | - | chr3.3:35017483-35017502 | MS.gene057990:intron | 45.0% | |
| CCCAAAGCAAAGGAAGAAAG+AGG | + | chr3.3:35016981-35017000 | None:intergenic | 45.0% | |
| CGGATATACCTGAATACGCT+AGG | - | chr3.3:35016910-35016929 | MS.gene057990:intron | 45.0% | |
| GAGTTTCTTCCACCCTGATT+TGG | + | chr3.3:35016409-35016428 | None:intergenic | 45.0% | |
| GATCTGCCATCGAAAGGAAA+TGG | - | chr3.3:35016828-35016847 | MS.gene057990:intron | 45.0% | |
| GCCTCTTTCTTCCTTTGCTT+TGG | - | chr3.3:35016977-35016996 | MS.gene057990:intron | 45.0% | |
| GCTCACCAATCTCGAATCAT+TGG | + | chr3.3:35016657-35016676 | None:intergenic | 45.0% | |
| GGGTGGAAGAAACTCTTATC+TGG | - | chr3.3:35016414-35016433 | MS.gene057990:intron | 45.0% | |
| GTGAGGCAGTTTCTTGGATT+AGG | + | chr3.3:35017125-35017144 | None:intergenic | 45.0% | |
| TGAAGGAAGTAGATTAGGGC+AGG | - | chr3.3:35016703-35016722 | MS.gene057990:intron | 45.0% | |
| TGTGAAGTAACTTCTGGACC+GGG | + | chr3.3:35016502-35016521 | None:intergenic | 45.0% | |
| ! | AAAATCTGCAAAAGCGCGCT+CGG | + | chr3.3:35018038-35018057 | None:intergenic | 45.0% |
| ! | AGAAAGTACGCCTGAAAGGA+AGG | + | chr3.3:35017530-35017549 | None:intergenic | 45.0% |
| ! | CAGATTAGTCCAAATCAGGG+TGG | - | chr3.3:35016397-35016416 | MS.gene057990:CDS | 45.0% |
| ! | TGGGTTAAAGGTTAGCCAGT+AGG | - | chr3.3:35017375-35017394 | MS.gene057990:intron | 45.0% |
| !! | AAGCAAGGAAAGGAAGTACC+TGG | + | chr3.3:35016273-35016292 | None:intergenic | 45.0% |
| !! | GGTAGTTTACATGGCTTTGG+TGG | - | chr3.3:35017486-35017505 | MS.gene057990:intron | 45.0% |
| !! | TGCAGAAGGCACTAGAAACA+TGG | - | chr3.3:35016526-35016545 | MS.gene057990:intron | 45.0% |
| ACTCCAGTGAGGCAGTTTCT+TGG | + | chr3.3:35017131-35017150 | None:intergenic | 50.0% | |
| ACTTGGATCCGGAGACAAAC+TGG | + | chr3.3:35017742-35017761 | None:intergenic | 50.0% | |
| CAGGCGTACTTTCTTGCGTA+GGG | - | chr3.3:35017536-35017555 | MS.gene057990:intron | 50.0% | |
| CTGCAATGTGGTGCTCCATT+TGG | - | chr3.3:35018063-35018082 | MS.gene057990:CDS | 50.0% | |
| TCAGGCGTACTTTCTTGCGT+AGG | - | chr3.3:35017535-35017554 | MS.gene057990:intron | 50.0% | |
| TCCAGGCCATTTCCTTTCGA+TGG | + | chr3.3:35016837-35016856 | None:intergenic | 50.0% | |
| TGATCTTTCCCTTGCCAGCT+GGG | - | chr3.3:35016937-35016956 | MS.gene057990:intron | 50.0% | |
| TGCAACCCCCACAAATCTCA+AGG | - | chr3.3:35016129-35016148 | MS.gene057990:CDS | 50.0% | |
| TGGCCCAGAATATGCGATTG+CGG | - | chr3.3:35016890-35016909 | MS.gene057990:intron | 50.0% | |
| ! | AAATCTGCAAAAGCGCGCTC+GGG | + | chr3.3:35018037-35018056 | None:intergenic | 50.0% |
| ! | CGCAAGAAAGTACGCCTGAA+AGG | + | chr3.3:35017534-35017553 | None:intergenic | 50.0% |
| !! | CAAGGAAAGGAAGTACCTGG+AGG | + | chr3.3:35016270-35016289 | None:intergenic | 50.0% |
| !! | GAAAGGAAGTACCTGGAGGA+GGG | + | chr3.3:35016266-35016285 | None:intergenic | 50.0% |
| !! | TCTTCCTTTGCTTTGGGACG+AGG | - | chr3.3:35016984-35017003 | MS.gene057990:intron | 50.0% |
| !!! | CTTTGTTTTGCTGACGGACC+AGG | + | chr3.3:35016795-35016814 | None:intergenic | 50.0% |
| ATCAGCCCCCTAGCGTATTC+AGG | + | chr3.3:35016921-35016940 | None:intergenic | 55.0% | |
| CTGATCTTTCCCTTGCCAGC+TGG | - | chr3.3:35016936-35016955 | MS.gene057990:intron | 55.0% | |
| GCCATCGAAAGGAAATGGCC+TGG | - | chr3.3:35016833-35016852 | MS.gene057990:intron | 55.0% | |
| GGAAATGGCCTGGACATTGC+AGG | - | chr3.3:35016843-35016862 | MS.gene057990:intron | 55.0% | |
| TTGCGTAGGGACTGCAGTTC+TGG | - | chr3.3:35017549-35017568 | MS.gene057990:intron | 55.0% | |
| !! | GGAAAGGAAGTACCTGGAGG+AGG | + | chr3.3:35016267-35016286 | None:intergenic | 55.0% |
| CAGGCCTCGTCCCAAAGCAA+AGG | + | chr3.3:35016991-35017010 | None:intergenic | 60.0% | |
| CCACGGGATCTGCCATCGAA+AGG | - | chr3.3:35016822-35016841 | MS.gene057990:intron | 60.0% | |
| CCTTTCGATGGCAGATCCCG+TGG | + | chr3.3:35016825-35016844 | None:intergenic | 60.0% | |
| TGTCTTCACTGCCCTCCTCC+AGG | - | chr3.3:35016252-35016271 | MS.gene057990:intron | 60.0% | |
| ! | GTAGGGACTGCAGTTCTGGC+TGG | - | chr3.3:35017553-35017572 | MS.gene057990:intron | 60.0% |
| TAGGGCAGGCTAACAGCGCC+AGG | - | chr3.3:35016717-35016736 | MS.gene057990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 35016067 | 35018108 | 35016067 | ID=MS.gene057990 |
| chr3.3 | mRNA | 35016067 | 35018108 | 35016067 | ID=MS.gene057990.t1;Parent=MS.gene057990 |
| chr3.3 | exon | 35018025 | 35018108 | 35018025 | ID=MS.gene057990.t1.exon1;Parent=MS.gene057990.t1 |
| chr3.3 | CDS | 35018025 | 35018108 | 35018025 | ID=cds.MS.gene057990.t1;Parent=MS.gene057990.t1 |
| chr3.3 | exon | 35017902 | 35017949 | 35017902 | ID=MS.gene057990.t1.exon2;Parent=MS.gene057990.t1 |
| chr3.3 | CDS | 35017902 | 35017949 | 35017902 | ID=cds.MS.gene057990.t1;Parent=MS.gene057990.t1 |
| chr3.3 | exon | 35016601 | 35016688 | 35016601 | ID=MS.gene057990.t1.exon3;Parent=MS.gene057990.t1 |
| chr3.3 | CDS | 35016601 | 35016688 | 35016601 | ID=cds.MS.gene057990.t1;Parent=MS.gene057990.t1 |
| chr3.3 | exon | 35016389 | 35016432 | 35016389 | ID=MS.gene057990.t1.exon4;Parent=MS.gene057990.t1 |
| chr3.3 | CDS | 35016389 | 35016432 | 35016389 | ID=cds.MS.gene057990.t1;Parent=MS.gene057990.t1 |
| chr3.3 | exon | 35016067 | 35016150 | 35016067 | ID=MS.gene057990.t1.exon5;Parent=MS.gene057990.t1 |
| chr3.3 | CDS | 35016067 | 35016150 | 35016067 | ID=cds.MS.gene057990.t1;Parent=MS.gene057990.t1 |
| Gene Sequence |
| Protein sequence |
