Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92821.t1 | XP_003621176.1 | 95.8 | 306 | 12 | 1 | 1 | 305 | 128 | 433 | 9.30E-171 | 609.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92821.t1 | Q9LH89 | 58.5 | 325 | 105 | 8 | 3 | 304 | 110 | 427 | 5.6e-100 | 365.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92821.t1 | Q2HVR5 | 95.8 | 306 | 12 | 1 | 1 | 305 | 128 | 433 | 6.7e-171 | 609.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049807 | MS.gene92821 | 0.807922 | 3.99E-50 | -1.69E-46 |
MS.gene051234 | MS.gene92821 | 0.802568 | 5.27E-49 | -1.69E-46 |
MS.gene059778 | MS.gene92821 | 0.81876 | 1.66E-52 | -1.69E-46 |
MS.gene061100 | MS.gene92821 | 0.817392 | 3.38E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92821.t1 | MTR_7g010090 | 96.405 | 306 | 10 | 1 | 1 | 305 | 128 | 433 | 0.0 | 602 |
MS.gene92821.t1 | MTR_6g011640 | 57.447 | 329 | 103 | 11 | 5 | 305 | 79 | 398 | 2.68e-114 | 336 |
MS.gene92821.t1 | MTR_3g030520 | 66.667 | 165 | 46 | 3 | 145 | 305 | 141 | 300 | 1.31e-62 | 200 |
MS.gene92821.t1 | MTR_1g051180 | 38.408 | 289 | 145 | 8 | 35 | 304 | 90 | 364 | 3.01e-53 | 178 |
MS.gene92821.t1 | MTR_8g038440 | 47.977 | 173 | 68 | 4 | 135 | 304 | 102 | 255 | 4.31e-41 | 143 |
MS.gene92821.t1 | MTR_3g465550 | 48.780 | 164 | 64 | 4 | 136 | 299 | 85 | 228 | 1.92e-39 | 138 |
MS.gene92821.t1 | MTR_5g083110 | 40.394 | 203 | 100 | 3 | 103 | 305 | 59 | 240 | 2.60e-39 | 138 |
MS.gene92821.t1 | MTR_7g090230 | 36.100 | 241 | 121 | 7 | 76 | 304 | 206 | 425 | 6.71e-39 | 142 |
MS.gene92821.t1 | MTR_3g017490 | 45.455 | 165 | 71 | 3 | 139 | 303 | 115 | 260 | 2.70e-38 | 137 |
MS.gene92821.t1 | MTR_5g048870 | 61.594 | 138 | 48 | 3 | 93 | 226 | 21 | 157 | 1.88e-37 | 131 |
MS.gene92821.t1 | MTR_7g104720 | 32.609 | 368 | 145 | 13 | 18 | 304 | 60 | 405 | 6.47e-37 | 136 |
MS.gene92821.t1 | MTR_7g079015 | 67.677 | 99 | 27 | 3 | 179 | 273 | 1 | 98 | 7.81e-36 | 125 |
MS.gene92821.t1 | MTR_7g106500 | 40.237 | 169 | 89 | 3 | 136 | 304 | 123 | 279 | 1.55e-35 | 129 |
MS.gene92821.t1 | MTR_1g090400 | 39.091 | 220 | 105 | 6 | 92 | 303 | 170 | 368 | 5.78e-35 | 130 |
MS.gene92821.t1 | MTR_5g072400 | 43.452 | 168 | 74 | 3 | 136 | 303 | 107 | 253 | 6.75e-35 | 127 |
MS.gene92821.t1 | MTR_1g053325 | 68.817 | 93 | 25 | 2 | 179 | 267 | 1 | 93 | 7.27e-33 | 117 |
MS.gene92821.t1 | MTR_8g099665 | 42.197 | 173 | 78 | 4 | 136 | 303 | 212 | 367 | 7.80e-33 | 124 |
MS.gene92821.t1 | MTR_1g095960 | 67.021 | 94 | 26 | 3 | 183 | 272 | 32 | 124 | 4.46e-32 | 116 |
MS.gene92821.t1 | MTR_2g026830 | 63.542 | 96 | 32 | 3 | 179 | 273 | 1 | 94 | 9.77e-32 | 114 |
MS.gene92821.t1 | MTR_8g106900 | 35.662 | 272 | 121 | 8 | 34 | 303 | 54 | 273 | 1.22e-31 | 119 |
MS.gene92821.t1 | MTR_2g028040 | 66.000 | 100 | 28 | 3 | 179 | 273 | 1 | 99 | 4.87e-31 | 119 |
MS.gene92821.t1 | MTR_2g028040 | 62.500 | 64 | 20 | 2 | 213 | 273 | 290 | 352 | 3.73e-15 | 75.5 |
MS.gene92821.t1 | MTR_2g028040 | 65.000 | 60 | 17 | 2 | 217 | 273 | 228 | 286 | 4.17e-12 | 66.2 |
MS.gene92821.t1 | MTR_3g071510 | 38.788 | 165 | 80 | 3 | 141 | 305 | 93 | 236 | 8.61e-31 | 116 |
MS.gene92821.t1 | MTR_1g098230 | 64.835 | 91 | 27 | 3 | 187 | 273 | 9 | 98 | 2.35e-29 | 108 |
MS.gene92821.t1 | MTR_5g088530 | 56.250 | 112 | 37 | 4 | 165 | 272 | 1 | 104 | 1.46e-28 | 106 |
MS.gene92821.t1 | MTR_5g065050 | 71.429 | 91 | 22 | 2 | 179 | 265 | 1 | 91 | 1.68e-28 | 105 |
MS.gene92821.t1 | MTR_5g031560 | 46.565 | 131 | 27 | 3 | 179 | 305 | 1 | 92 | 2.19e-26 | 100 |
MS.gene92821.t1 | MTR_7g078370 | 65.432 | 81 | 24 | 2 | 195 | 272 | 66 | 145 | 4.63e-26 | 101 |
MS.gene92821.t1 | MTR_5g064740 | 61.458 | 96 | 26 | 3 | 179 | 273 | 1 | 86 | 5.95e-26 | 99.0 |
MS.gene92821.t1 | MTR_4g109990 | 50.400 | 125 | 17 | 3 | 163 | 287 | 1 | 80 | 7.29e-26 | 98.6 |
MS.gene92821.t1 | MTR_2g436640 | 60.976 | 82 | 25 | 3 | 209 | 287 | 61 | 138 | 2.27e-21 | 89.4 |
MS.gene92821.t1 | MTR_7g086680 | 60.759 | 79 | 24 | 3 | 179 | 253 | 1 | 76 | 3.15e-20 | 83.2 |
MS.gene92821.t1 | MTR_6g042350 | 55.556 | 90 | 21 | 3 | 179 | 264 | 1 | 75 | 4.16e-20 | 83.6 |
MS.gene92821.t1 | MTR_1g073880 | 67.188 | 64 | 20 | 1 | 179 | 241 | 1 | 64 | 1.51e-19 | 81.6 |
MS.gene92821.t1 | MTR_6g086570 | 71.698 | 53 | 12 | 1 | 213 | 262 | 19 | 71 | 3.29e-17 | 75.5 |
MS.gene92821.t1 | MTR_0140s0020 | 71.186 | 59 | 16 | 1 | 179 | 236 | 1 | 59 | 4.25e-14 | 66.2 |
MS.gene92821.t1 | MTR_4g059510 | 55.263 | 76 | 30 | 2 | 201 | 273 | 57 | 131 | 1.97e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92821.t1 | AT3G28850 | 59.317 | 322 | 107 | 8 | 3 | 304 | 110 | 427 | 4.04e-115 | 339 |
MS.gene92821.t1 | AT5G39865 | 51.250 | 320 | 98 | 6 | 3 | 304 | 110 | 389 | 9.27e-104 | 308 |
MS.gene92821.t1 | AT3G57070 | 35.608 | 337 | 132 | 11 | 30 | 304 | 103 | 416 | 1.47e-50 | 172 |
MS.gene92821.t1 | AT2G41330 | 35.380 | 342 | 147 | 12 | 13 | 304 | 84 | 401 | 3.19e-47 | 163 |
MS.gene92821.t1 | AT5G58530 | 40.183 | 219 | 98 | 6 | 101 | 305 | 68 | 267 | 3.95e-42 | 147 |
MS.gene92821.t1 | AT5G13810 | 42.365 | 203 | 85 | 5 | 102 | 303 | 101 | 272 | 9.63e-41 | 143 |
MS.gene92821.t1 | AT5G03870 | 33.634 | 333 | 139 | 9 | 32 | 303 | 72 | 383 | 8.76e-39 | 140 |
MS.gene92821.t1 | AT1G64500 | 45.029 | 171 | 77 | 5 | 136 | 303 | 209 | 365 | 1.70e-36 | 134 |
MS.gene92821.t1 | AT4G10630 | 35.959 | 292 | 142 | 9 | 27 | 303 | 72 | 333 | 6.52e-36 | 132 |
MS.gene92821.t1 | AT5G06470 | 42.857 | 168 | 81 | 4 | 136 | 303 | 86 | 238 | 4.85e-35 | 127 |
MS.gene92821.t1 | AT1G32760 | 36.765 | 272 | 121 | 8 | 34 | 303 | 91 | 313 | 1.62e-31 | 120 |
MS.gene92821.t1 | AT3G11773 | 38.509 | 161 | 77 | 3 | 143 | 303 | 11 | 149 | 1.97e-26 | 102 |
MS.gene92821.t1 | AT5G01420 | 39.645 | 169 | 80 | 4 | 136 | 303 | 253 | 400 | 4.84e-24 | 101 |
MS.gene92821.t1 | AT3G11773 | 35.385 | 130 | 62 | 3 | 174 | 303 | 92 | 199 | 3.89e-16 | 75.9 |
Find 59 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCATGTGTTGATTGTTTC+TGG | 0.087504 | 7.1:+85420985 | None:intergenic |
CATCAATTGATGTTTGTTTA+AGG | 0.118181 | 7.1:+85420740 | None:intergenic |
ATTTGAAGCCACATTGATTT+AGG | 0.250995 | 7.1:+85420865 | None:intergenic |
GATGTTTGTTTAAGGTAAAA+AGG | 0.259720 | 7.1:+85420748 | None:intergenic |
AATCAACACATGGGAGTTAA+TGG | 0.270519 | 7.1:-85420977 | MS.gene92821:CDS |
GGTGTTCTTGTTGGTGTCTT+AGG | 0.277295 | 7.1:+85421018 | None:intergenic |
AGAGATGTATCAATGCATTT+AGG | 0.299301 | 7.1:-85420559 | MS.gene92821:CDS |
GGTCGTGAAGAAGGCGAGTT+TGG | 0.317310 | 7.1:-85420250 | MS.gene92821:CDS |
GTGAGAATTGTGGTGATATA+AGG | 0.346142 | 7.1:-85420357 | MS.gene92821:CDS |
GTTCCTTGTGAAACTTGTTT+TGG | 0.367950 | 7.1:-85420331 | MS.gene92821:CDS |
TTCTACTTCACAAGCTTAAG+AGG | 0.391723 | 7.1:-85420655 | MS.gene92821:CDS |
GTTTGGATTCCAACGTTGTC+CGG | 0.407446 | 7.1:-85420233 | MS.gene92821:CDS |
ATCAATGCATTTAGGATTCA+AGG | 0.410818 | 7.1:-85420551 | MS.gene92821:CDS |
TCACCAGGTGGTGTTCTTGT+TGG | 0.422909 | 7.1:+85421009 | None:intergenic |
ATCTTGAGAGAGTTCTTGTA+AGG | 0.439309 | 7.1:+85420774 | None:intergenic |
TGGAAAGCTTGAGAAATTGT+TGG | 0.442255 | 7.1:-85420416 | MS.gene92821:CDS |
ATTGAGAAACTTCATGAAGA+TGG | 0.453523 | 7.1:-85420436 | MS.gene92821:CDS |
CTAAATGATGAAATCACGTC+AGG | 0.461132 | 7.1:+85420802 | None:intergenic |
CTCTCAAAATCATCCTCACT+TGG | 0.477958 | 7.1:+85420605 | None:intergenic |
AGGTGATTCGGCGATCGAAA+AGG | 0.481626 | 7.1:+85420934 | None:intergenic |
TGTAAAATCTACTATGAAGA+TGG | 0.484572 | 7.1:-85420304 | MS.gene92821:CDS |
GATGATCATGGTCGTGAAGA+AGG | 0.495634 | 7.1:-85420259 | MS.gene92821:CDS |
TGAAGCCACATTGATTTAGG+AGG | 0.496188 | 7.1:+85420868 | None:intergenic |
TAAGGTTGGTGGAAAGGAAA+AGG | 0.498704 | 7.1:-85420683 | MS.gene92821:CDS |
TTTGTTGGTAAGAATTACAT+TGG | 0.498874 | 7.1:-85420472 | MS.gene92821:CDS |
CGTCAGGATCAAAATCAACT+TGG | 0.503983 | 7.1:+85420818 | None:intergenic |
TTGATTGTTTCTGGTTCACC+AGG | 0.504436 | 7.1:+85420994 | None:intergenic |
ACAAACATCAATTGATGAAG+AGG | 0.514395 | 7.1:-85420734 | MS.gene92821:CDS |
TTTGTGGATGTTAAGGTTGG+TGG | 0.516446 | 7.1:-85420694 | MS.gene92821:CDS |
TTTGGTGATTTGTATGGTGG+AGG | 0.516466 | 7.1:-85420511 | MS.gene92821:CDS |
TTTGATGTCAATGGTGGTGA+AGG | 0.524178 | 7.1:-85420898 | MS.gene92821:CDS |
TGTCCGGATTGTAATGAAAA+CGG | 0.534066 | 7.1:-85420217 | MS.gene92821:CDS |
GAATTACATTGGTGGAGTTG+AGG | 0.540698 | 7.1:-85420461 | MS.gene92821:CDS |
GTTGGTAAGAATTACATTGG+TGG | 0.551303 | 7.1:-85420469 | MS.gene92821:CDS |
GAGGAAGAATATGATGATCA+TGG | 0.555068 | 7.1:-85420271 | MS.gene92821:CDS |
GGTTGATTGAGGCAAAGACT+TGG | 0.560977 | 7.1:-85421077 | MS.gene92821:CDS |
TCTACTTCACAAGCTTAAGA+GGG | 0.584829 | 7.1:-85420654 | MS.gene92821:CDS |
GGATGTTAAGGTTGGTGGAA+AGG | 0.588762 | 7.1:-85420689 | MS.gene92821:CDS |
AAAATTGAGGATAGTAGTGG+TGG | 0.600502 | 7.1:-85420382 | MS.gene92821:CDS |
ATTGTTTCTGGTTCACCAGG+TGG | 0.602186 | 7.1:+85420997 | None:intergenic |
AACCAGAAACAATCAACACA+TGG | 0.603332 | 7.1:-85420987 | MS.gene92821:CDS |
CATTACAATCCGGACAACGT+TGG | 0.612211 | 7.1:+85420224 | None:intergenic |
CTTCCAAAACAAGTTTCACA+AGG | 0.615798 | 7.1:+85420328 | None:intergenic |
AACACATGGGAGTTAATGGA+AGG | 0.623703 | 7.1:-85420973 | MS.gene92821:CDS |
GGAATGTTGTGAGAAAATTG+AGG | 0.625190 | 7.1:-85420395 | MS.gene92821:CDS |
ATGAAGATTGTTGCCAAGTG+AGG | 0.627753 | 7.1:-85420618 | MS.gene92821:CDS |
TTGTAACTAGTAGCAGCACA+CGG | 0.628118 | 7.1:+85420180 | None:intergenic |
TGTAACTAGTAGCAGCACAC+GGG | 0.628183 | 7.1:+85420181 | None:intergenic |
AGTGGTGGATGTGAGAATTG+TGG | 0.628466 | 7.1:-85420367 | MS.gene92821:CDS |
GAGAAAATTGAGGATAGTAG+TGG | 0.638020 | 7.1:-85420385 | MS.gene92821:CDS |
TGGTGGAGGAAGATTGCCAA+AGG | 0.640203 | 7.1:-85420497 | MS.gene92821:CDS |
CTACTTCACAAGCTTAAGAG+GGG | 0.665104 | 7.1:-85420653 | MS.gene92821:CDS |
ACACCAACAAGAACACCACC+TGG | 0.665338 | 7.1:-85421012 | MS.gene92821:CDS |
ACCAGAAACAATCAACACAT+GGG | 0.696633 | 7.1:-85420986 | MS.gene92821:CDS |
TTGATCCTCCTAAATCAATG+TGG | 0.706563 | 7.1:-85420873 | MS.gene92821:CDS |
GTAACTAGTAGCAGCACACG+GGG | 0.716227 | 7.1:+85420182 | None:intergenic |
AATGTGGCTTCAAATTACCG+AGG | 0.717932 | 7.1:-85420857 | MS.gene92821:CDS |
TGAAGATGGTGATGACGACG+AGG | 0.723023 | 7.1:-85420290 | MS.gene92821:CDS |
AATGCATTTAGGATTCAAGG+AGG | 0.743777 | 7.1:-85420548 | MS.gene92821:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGTTTGTTTAAGGTAAAAA+GGG | + | chr7.1:85420521-85420540 | None:intergenic | 20.0% |
! | CATCAATTGATGTTTGTTTA+AGG | + | chr7.1:85420530-85420549 | None:intergenic | 25.0% |
! | TGTAAAATCTACTATGAAGA+TGG | - | chr7.1:85420963-85420982 | MS.gene92821:CDS | 25.0% |
!! | GATGTTTGTTTAAGGTAAAA+AGG | + | chr7.1:85420522-85420541 | None:intergenic | 25.0% |
!! | TTTGTTGGTAAGAATTACAT+TGG | - | chr7.1:85420795-85420814 | MS.gene92821:CDS | 25.0% |
!!! | AATGAAAGATGATGTTTTTG+TGG | - | chr7.1:85420557-85420576 | MS.gene92821:CDS | 25.0% |
ACAAACATCAATTGATGAAG+AGG | - | chr7.1:85420533-85420552 | MS.gene92821:CDS | 30.0% | |
AGAGATGTATCAATGCATTT+AGG | - | chr7.1:85420708-85420727 | MS.gene92821:CDS | 30.0% | |
ATTGAGAAACTTCATGAAGA+TGG | - | chr7.1:85420831-85420850 | MS.gene92821:CDS | 30.0% | |
TTCTTACCAACAAAAACCTT+TGG | + | chr7.1:85420789-85420808 | None:intergenic | 30.0% | |
! | ATCAATGCATTTAGGATTCA+AGG | - | chr7.1:85420716-85420735 | MS.gene92821:CDS | 30.0% |
!! | ATTTGAAGCCACATTGATTT+AGG | + | chr7.1:85420405-85420424 | None:intergenic | 30.0% |
!! | TGATGTTTTTGTGGATGTTA+AGG | - | chr7.1:85420566-85420585 | MS.gene92821:CDS | 30.0% |
AAAATTGAGGATAGTAGTGG+TGG | - | chr7.1:85420885-85420904 | MS.gene92821:CDS | 35.0% | |
AACCAGAAACAATCAACACA+TGG | - | chr7.1:85420280-85420299 | MS.gene92821:CDS | 35.0% | |
AATCAACACATGGGAGTTAA+TGG | - | chr7.1:85420290-85420309 | MS.gene92821:CDS | 35.0% | |
ACCAGAAACAATCAACACAT+GGG | - | chr7.1:85420281-85420300 | MS.gene92821:CDS | 35.0% | |
ATCTTGAGAGAGTTCTTGTA+AGG | + | chr7.1:85420496-85420515 | None:intergenic | 35.0% | |
CTAAATGATGAAATCACGTC+AGG | + | chr7.1:85420468-85420487 | None:intergenic | 35.0% | |
CTTCCAAAACAAGTTTCACA+AGG | + | chr7.1:85420942-85420961 | None:intergenic | 35.0% | |
GAGAAAATTGAGGATAGTAG+TGG | - | chr7.1:85420882-85420901 | MS.gene92821:CDS | 35.0% | |
GAGGAAGAATATGATGATCA+TGG | - | chr7.1:85420996-85421015 | MS.gene92821:CDS | 35.0% | |
GGAATGTTGTGAGAAAATTG+AGG | - | chr7.1:85420872-85420891 | MS.gene92821:CDS | 35.0% | |
GTGAGAATTGTGGTGATATA+AGG | - | chr7.1:85420910-85420929 | MS.gene92821:CDS | 35.0% | |
TCTACTTCACAAGCTTAAGA+GGG | - | chr7.1:85420613-85420632 | MS.gene92821:CDS | 35.0% | |
TGGAAAGCTTGAGAAATTGT+TGG | - | chr7.1:85420851-85420870 | MS.gene92821:CDS | 35.0% | |
TGTCCGGATTGTAATGAAAA+CGG | - | chr7.1:85421050-85421069 | MS.gene92821:CDS | 35.0% | |
TTCTACTTCACAAGCTTAAG+AGG | - | chr7.1:85420612-85420631 | MS.gene92821:CDS | 35.0% | |
TTGATCCTCCTAAATCAATG+TGG | - | chr7.1:85420394-85420413 | MS.gene92821:CDS | 35.0% | |
! | AATGCATTTAGGATTCAAGG+AGG | - | chr7.1:85420719-85420738 | MS.gene92821:CDS | 35.0% |
! | AGATTGCCAAAGGTTTTTGT+TGG | - | chr7.1:85420780-85420799 | MS.gene92821:CDS | 35.0% |
! | AGCTTCTCTTTTGATGTCAA+TGG | - | chr7.1:85420360-85420379 | MS.gene92821:CDS | 35.0% |
! | AGTCCGTTTTCATTACAATC+CGG | + | chr7.1:85421056-85421075 | None:intergenic | 35.0% |
! | CATCAAAAGAGAAGCTTTTG+AGG | + | chr7.1:85420356-85420375 | None:intergenic | 35.0% |
! | GTTGGTAAGAATTACATTGG+TGG | - | chr7.1:85420798-85420817 | MS.gene92821:CDS | 35.0% |
! | GTTTTTGTGGATGTTAAGGT+TGG | - | chr7.1:85420570-85420589 | MS.gene92821:CDS | 35.0% |
! | TTCTCTTTTGATGTCAATGG+TGG | - | chr7.1:85420363-85420382 | MS.gene92821:CDS | 35.0% |
!! | AAGTGAGGATGATTTTGAGA+GGG | - | chr7.1:85420664-85420683 | MS.gene92821:CDS | 35.0% |
!! | CTTTTTGGTGATTTGTATGG+TGG | - | chr7.1:85420753-85420772 | MS.gene92821:CDS | 35.0% |
!! | GAGCTTTTTGGTGATTTGTA+TGG | - | chr7.1:85420750-85420769 | MS.gene92821:CDS | 35.0% |
!! | GTTCCTTGTGAAACTTGTTT+TGG | - | chr7.1:85420936-85420955 | MS.gene92821:CDS | 35.0% |
!!! | GTTGAGTTTTGATTCTTCCT+CGG | + | chr7.1:85420430-85420449 | None:intergenic | 35.0% |
AACACATGGGAGTTAATGGA+AGG | - | chr7.1:85420294-85420313 | MS.gene92821:CDS | 40.0% | |
AATGTGGCTTCAAATTACCG+AGG | - | chr7.1:85420410-85420429 | MS.gene92821:CDS | 40.0% | |
ATGAAGATTGTTGCCAAGTG+AGG | - | chr7.1:85420649-85420668 | MS.gene92821:CDS | 40.0% | |
CGTCAGGATCAAAATCAACT+TGG | + | chr7.1:85420452-85420471 | None:intergenic | 40.0% | |
CTACTTCACAAGCTTAAGAG+GGG | - | chr7.1:85420614-85420633 | MS.gene92821:CDS | 40.0% | |
CTCTCAAAATCATCCTCACT+TGG | + | chr7.1:85420665-85420684 | None:intergenic | 40.0% | |
GAATTACATTGGTGGAGTTG+AGG | - | chr7.1:85420806-85420825 | MS.gene92821:CDS | 40.0% | |
TTTGTGGATGTTAAGGTTGG+TGG | - | chr7.1:85420573-85420592 | MS.gene92821:CDS | 40.0% | |
! | CAAGTGAGGATGATTTTGAG+AGG | - | chr7.1:85420663-85420682 | MS.gene92821:CDS | 40.0% |
! | TTTGATGTCAATGGTGGTGA+AGG | - | chr7.1:85420369-85420388 | MS.gene92821:CDS | 40.0% |
! | TTTGGTGATTTGTATGGTGG+AGG | - | chr7.1:85420756-85420775 | MS.gene92821:CDS | 40.0% |
!! | AGGATGATTTTGAGAGGGTT+AGG | - | chr7.1:85420669-85420688 | MS.gene92821:CDS | 40.0% |
!! | TAAGGTTGGTGGAAAGGAAA+AGG | - | chr7.1:85420584-85420603 | MS.gene92821:CDS | 40.0% |
!! | TCCCATGTGTTGATTGTTTC+TGG | + | chr7.1:85420285-85420304 | None:intergenic | 40.0% |
!! | TGAAGCCACATTGATTTAGG+AGG | + | chr7.1:85420402-85420421 | None:intergenic | 40.0% |
!! | TTGATTGTTTCTGGTTCACC+AGG | + | chr7.1:85420276-85420295 | None:intergenic | 40.0% |
!!! | GAGAAGCTTTTGAGGTGATT+CGG | + | chr7.1:85420348-85420367 | None:intergenic | 40.0% |
CATTACAATCCGGACAACGT+TGG | + | chr7.1:85421046-85421065 | None:intergenic | 45.0% | |
GATGATCATGGTCGTGAAGA+AGG | - | chr7.1:85421008-85421027 | MS.gene92821:CDS | 45.0% | |
GGTTGATTGAGGCAAAGACT+TGG | - | chr7.1:85420190-85420209 | MS.gene92821:CDS | 45.0% | |
GTTTGGATTCCAACGTTGTC+CGG | - | chr7.1:85421034-85421053 | MS.gene92821:CDS | 45.0% | |
! | GAGGAGCTAAGAGAGCTTTT+TGG | - | chr7.1:85420738-85420757 | MS.gene92821:CDS | 45.0% |
! | GGTGTTCTTGTTGGTGTCTT+AGG | + | chr7.1:85420252-85420271 | None:intergenic | 45.0% |
!! | AGTGGTGGATGTGAGAATTG+TGG | - | chr7.1:85420900-85420919 | MS.gene92821:CDS | 45.0% |
!! | ATTGTTTCTGGTTCACCAGG+TGG | + | chr7.1:85420273-85420292 | None:intergenic | 45.0% |
!! | GGATGTTAAGGTTGGTGGAA+AGG | - | chr7.1:85420578-85420597 | MS.gene92821:CDS | 45.0% |
ACACCAACAAGAACACCACC+TGG | - | chr7.1:85420255-85420274 | MS.gene92821:CDS | 50.0% | |
TCACCAGGTGGTGTTCTTGT+TGG | + | chr7.1:85420261-85420280 | None:intergenic | 50.0% | |
TGGTGGAGGAAGATTGCCAA+AGG | - | chr7.1:85420770-85420789 | MS.gene92821:CDS | 50.0% | |
! | AGGTGATTCGGCGATCGAAA+AGG | + | chr7.1:85420336-85420355 | None:intergenic | 50.0% |
! | TGAAGATGGTGATGACGACG+AGG | - | chr7.1:85420977-85420996 | MS.gene92821:CDS | 50.0% |
GGTCGTGAAGAAGGCGAGTT+TGG | - | chr7.1:85421017-85421036 | MS.gene92821:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 85420186 | 85421103 | 85420186 | ID=MS.gene92821 |
chr7.1 | mRNA | 85420186 | 85421103 | 85420186 | ID=MS.gene92821.t1;Parent=MS.gene92821 |
chr7.1 | exon | 85420186 | 85421103 | 85420186 | ID=MS.gene92821.t1.exon1;Parent=MS.gene92821.t1 |
chr7.1 | CDS | 85420186 | 85421103 | 85420186 | ID=cds.MS.gene92821.t1;Parent=MS.gene92821.t1 |
Gene Sequence |
Protein sequence |