AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93419

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93419.t1 MTR_1g105885 96.032 252 10 0 1 252 1 252 0.0 506
MS.gene93419.t1 MTR_1g105860 71.875 256 66 4 1 251 18 272 2.90e-133 377
MS.gene93419.t1 MTR_1g105860 71.875 256 66 4 1 251 1 255 4.05e-133 376
MS.gene93419.t1 MTR_1g105855 67.547 265 70 6 1 251 18 280 1.35e-124 355
MS.gene93419.t1 MTR_1g021638 55.510 245 102 3 12 250 8 251 1.39e-91 273
MS.gene93419.t1 MTR_0341s0010 54.183 251 103 6 12 251 8 257 9.18e-90 268
MS.gene93419.t1 MTR_1g021632 55.242 248 104 4 10 251 7 253 2.46e-88 275
MS.gene93419.t1 MTR_1g021630 54.183 251 103 6 12 251 8 257 3.72e-86 270
MS.gene93419.t1 MTR_1g105850 54.978 231 102 2 23 252 30 259 1.39e-84 255
MS.gene93419.t1 MTR_1g021635 53.036 247 108 4 12 251 8 253 3.18e-82 259
MS.gene93419.t1 MTR_1g021610 53.659 246 105 5 13 251 10 253 2.18e-80 254
MS.gene93419.t1 MTR_1g105820 51.639 244 110 5 9 250 13 250 1.50e-77 247
MS.gene93419.t1 MTR_1g021642 50.781 256 114 5 1 246 8 261 6.24e-74 238
MS.gene93419.t1 MTR_1g105755 47.934 242 119 3 9 250 13 247 3.97e-71 229
MS.gene93419.t1 MTR_5g068260 48.770 244 117 4 10 251 8 245 4.38e-71 230
MS.gene93419.t1 MTR_1g105750 49.794 243 115 4 9 249 13 250 1.47e-66 218
MS.gene93419.t1 MTR_5g068250 48.684 228 111 3 24 251 29 250 6.60e-66 214
MS.gene93419.t1 MTR_0341s0020 44.578 249 99 6 12 251 8 226 3.83e-61 204
MS.gene93419.t1 MTR_1g105800 47.679 237 116 4 15 250 19 248 2.14e-60 201
MS.gene93419.t1 MTR_5g068190 43.725 247 126 5 10 250 8 247 7.56e-59 197
MS.gene93419.t1 MTR_1g105840 42.000 250 134 5 4 252 1 240 2.89e-56 191
MS.gene93419.t1 MTR_5g065130 41.564 243 128 5 14 252 10 242 7.20e-53 181
MS.gene93419.t1 MTR_1g105700 38.589 241 133 6 21 252 19 253 1.02e-46 165
MS.gene93419.t1 MTR_1g105710 39.189 222 121 6 39 252 33 248 1.19e-44 159
MS.gene93419.t1 MTR_1g105830 36.364 242 127 5 14 252 35 252 1.09e-43 149
MS.gene93419.t1 MTR_7g052020 31.818 242 156 4 9 250 5 237 6.54e-40 139
MS.gene93419.t1 MTR_1g105640 34.959 246 148 7 11 251 15 253 2.67e-35 133
MS.gene93419.t1 MTR_1g105640 34.959 246 148 7 11 251 15 253 3.21e-35 132
MS.gene93419.t1 MTR_1g105640 34.959 246 148 7 11 251 15 253 3.31e-35 132
MS.gene93419.t1 MTR_6g463660 33.462 260 157 6 1 252 1 252 4.05e-34 128
MS.gene93419.t1 MTR_6g463660 32.353 204 126 6 50 250 296 490 1.24e-22 96.7
MS.gene93419.t1 MTR_6g057680 33.462 260 157 6 1 252 1 252 4.05e-34 128
MS.gene93419.t1 MTR_6g057680 32.353 204 126 6 50 250 296 490 1.24e-22 96.7
MS.gene93419.t1 MTR_5g068290 50.400 125 60 2 127 251 1 123 9.33e-34 125
MS.gene93419.t1 MTR_1g104890 31.925 213 139 3 41 251 51 259 2.57e-33 123
MS.gene93419.t1 MTR_2g088980 31.325 249 156 7 4 249 7 243 1.69e-32 119
MS.gene93419.t1 MTR_1g104890 31.925 213 139 3 41 251 51 259 1.90e-32 123
MS.gene93419.t1 MTR_1g104890 31.925 213 139 3 41 251 51 259 7.34e-32 122
MS.gene93419.t1 MTR_1g104890 31.925 213 139 3 41 251 51 259 1.10e-31 123
MS.gene93419.t1 MTR_5g005480 32.645 242 154 6 13 250 13 249 3.82e-31 121
MS.gene93419.t1 MTR_6g463400 31.395 258 164 5 1 252 1 251 2.94e-30 118
MS.gene93419.t1 MTR_6g463400 32.489 237 139 8 20 251 271 491 6.08e-27 108
MS.gene93419.t1 MTR_5g005450 29.845 258 160 8 1 250 1 245 1.07e-29 117
MS.gene93419.t1 MTR_6g055960 29.961 257 163 7 1 252 1 245 1.40e-29 117
MS.gene93419.t1 MTR_6g055960 30.992 242 141 8 19 250 258 483 1.09e-22 97.1
MS.gene93419.t1 MTR_6g463830 31.274 259 164 7 1 252 1 252 4.82e-29 115
MS.gene93419.t1 MTR_6g463830 31.556 225 136 8 28 250 281 489 9.18e-19 85.9
MS.gene93419.t1 MTR_2g088930 29.880 251 161 7 4 251 7 245 2.15e-28 108
MS.gene93419.t1 MTR_5g005530 34.711 242 148 5 11 250 14 247 3.32e-28 112
MS.gene93419.t1 MTR_1g105585 33.486 218 127 6 43 252 48 255 5.90e-28 112
MS.gene93419.t1 MTR_1g105650 32.075 212 138 3 43 251 46 254 6.51e-28 112
MS.gene93419.t1 MTR_0007s0020 30.651 261 164 6 1 252 1 253 1.55e-27 111
MS.gene93419.t1 MTR_0007s0020 32.843 204 125 6 50 250 298 492 2.68e-20 90.1
MS.gene93419.t1 MTR_8g028065 31.907 257 153 9 1 250 1 242 7.87e-27 109
MS.gene93419.t1 MTR_8g028065 28.194 227 142 8 32 251 276 488 1.69e-16 79.0
MS.gene93419.t1 MTR_3g011890 30.088 226 144 5 30 251 30 245 1.02e-26 104
MS.gene93419.t1 MTR_1g105595 32.381 210 132 6 47 252 52 255 2.70e-26 107
MS.gene93419.t1 MTR_1g105595 32.381 210 132 6 47 252 52 255 2.71e-26 107
MS.gene93419.t1 MTR_6g057750 29.412 255 169 6 1 250 4 252 1.61e-25 105
MS.gene93419.t1 MTR_6g057750 26.316 247 163 8 14 251 266 502 1.25e-17 82.4
MS.gene93419.t1 MTR_6g463700 29.412 255 169 6 1 250 4 252 1.67e-25 105
MS.gene93419.t1 MTR_3g011910 31.890 254 157 8 1 250 17 258 1.01e-24 102
MS.gene93419.t1 MTR_3g011910 32.456 228 139 7 27 250 16 232 6.67e-24 100
MS.gene93419.t1 MTR_6g057770 30.962 239 155 5 20 252 19 253 7.26e-24 100
MS.gene93419.t1 MTR_6g057770 33.171 205 127 6 48 250 295 491 4.01e-20 89.7
MS.gene93419.t1 MTR_6g463710 30.962 239 155 5 20 252 19 253 7.40e-24 100
MS.gene93419.t1 MTR_6g463710 33.171 205 127 6 48 250 295 491 3.79e-20 89.7
MS.gene93419.t1 MTR_1g105655 31.651 218 138 6 37 250 43 253 7.62e-24 100
MS.gene93419.t1 MTR_8g041650 29.218 243 161 6 12 251 15 249 2.03e-23 99.4
MS.gene93419.t1 MTR_6g053000 32.549 255 155 10 1 250 1 243 1.13e-22 97.1
MS.gene93419.t1 MTR_5g005520 30.556 216 139 6 41 250 36 246 1.24e-22 96.7
MS.gene93419.t1 MTR_5g005520 30.556 216 139 6 41 250 41 251 2.22e-22 96.3
MS.gene93419.t1 MTR_1g105615 29.389 262 164 9 2 252 3 254 3.28e-22 95.5
MS.gene93419.t1 MTR_1g105725 27.064 218 143 6 45 252 58 269 3.44e-22 95.5
MS.gene93419.t1 MTR_8g041710 27.049 244 162 7 11 251 13 243 3.19e-20 89.7
MS.gene93419.t1 MTR_2g010730 26.522 230 156 5 24 250 27 246 4.76e-19 84.3
MS.gene93419.t1 MTR_1g105600 31.754 211 129 7 47 250 307 509 1.86e-18 84.7
MS.gene93419.t1 MTR_1g105600 30.392 204 122 10 61 251 69 265 2.94e-13 69.3
MS.gene93419.t1 MTR_0074s0060 27.757 263 145 7 1 250 1 231 3.21e-18 84.0
MS.gene93419.t1 MTR_8g041880 25.984 254 169 8 4 251 8 248 9.72e-18 82.4
MS.gene93419.t1 MTR_1g105715 56.897 58 25 0 61 118 4 61 5.04e-17 74.3
MS.gene93419.t1 MTR_3g079850 29.808 208 118 8 64 251 63 262 4.48e-16 77.4
MS.gene93419.t1 MTR_3g079850 29.808 208 118 8 64 251 63 262 5.97e-16 77.4
MS.gene93419.t1 MTR_2g010710 24.898 245 164 7 10 250 13 241 8.08e-16 75.5
MS.gene93419.t1 MTR_8g041690 30.723 166 108 4 86 251 88 246 9.23e-16 76.6
MS.gene93419.t1 MTR_8g041910 23.529 255 168 10 10 250 14 255 2.04e-15 75.9
MS.gene93419.t1 MTR_0264s0030 33.526 173 106 6 83 250 76 244 7.91e-15 73.2
MS.gene93419.t1 MTR_8g041870 25.532 188 113 6 66 250 84 247 4.82e-14 71.6
MS.gene93419.t1 MTR_3g415620 39.091 110 62 3 28 136 106 211 2.11e-13 67.8
MS.gene93419.t1 MTR_8g041660 23.585 212 149 6 45 251 44 247 3.75e-13 68.9
MS.gene93419.t1 MTR_8g041660 23.585 212 149 6 45 251 44 247 4.11e-13 68.9
MS.gene93419.t1 MTR_1g105720 50.909 55 27 0 61 115 9 63 2.57e-12 61.6
MS.gene93419.t1 MTR_8g041890 24.400 250 171 7 10 251 9 248 1.33e-11 64.3
MS.gene93419.t1 MTR_8g104990 22.749 211 144 5 38 244 32 227 1.79e-11 63.2
MS.gene93419.t1 MTR_6g057440 29.870 154 96 5 1 149 1 147 1.91e-11 60.8
MS.gene93419.t1 MTR_2g010720 23.810 189 132 4 65 252 129 306 1.95e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93419.t1 AT4G21410 38.073 218 128 4 37 251 38 251 8.14e-39 141
MS.gene93419.t1 AT4G21410 38.073 218 128 4 37 251 38 251 2.38e-38 142
MS.gene93419.t1 AT3G22060 34.884 215 134 3 38 252 43 251 9.19e-37 130
MS.gene93419.t1 AT4G38830 36.697 218 132 4 35 250 32 245 7.19e-36 134
MS.gene93419.t1 AT4G21400 33.953 215 137 3 39 251 42 253 3.53e-34 129
MS.gene93419.t1 AT4G21400 33.953 215 137 3 39 251 42 253 5.59e-34 129
MS.gene93419.t1 AT4G21400 33.953 215 137 3 39 251 42 253 5.59e-34 129
MS.gene93419.t1 AT4G21400 33.953 215 137 3 39 251 42 253 5.59e-34 129
MS.gene93419.t1 AT4G21400 33.953 215 137 3 39 251 42 253 9.24e-34 129
MS.gene93419.t1 AT4G21400 33.953 215 137 3 39 251 42 253 1.13e-33 129
MS.gene93419.t1 AT4G23160 36.864 236 133 8 21 250 37 262 5.18e-33 127
MS.gene93419.t1 AT4G23160 36.864 236 133 8 21 250 617 842 8.15e-33 126
MS.gene93419.t1 AT4G23160 36.864 236 133 8 21 250 617 842 8.15e-33 126
MS.gene93419.t1 AT4G05200 34.263 251 150 8 5 250 8 248 1.08e-32 125
MS.gene93419.t1 AT4G05200 34.263 251 150 8 5 250 26 266 1.19e-32 125
MS.gene93419.t1 AT4G23220 32.243 214 144 1 39 251 29 242 1.23e-32 125
MS.gene93419.t1 AT4G23180 36.325 234 134 8 21 250 31 253 1.89e-32 124
MS.gene93419.t1 AT4G23170 35.865 237 134 9 21 250 20 245 2.18e-32 119
MS.gene93419.t1 AT4G23180 36.325 234 134 8 21 250 31 253 3.32e-32 124
MS.gene93419.t1 AT4G21230 36.986 219 119 7 37 250 37 241 4.97e-32 124
MS.gene93419.t1 AT4G23180 36.325 234 134 8 21 250 31 253 5.79e-32 124
MS.gene93419.t1 AT4G23280 37.089 213 122 5 41 250 39 242 1.00e-31 122
MS.gene93419.t1 AT4G23280 37.089 213 122 5 41 250 39 242 1.10e-31 123
MS.gene93419.t1 AT4G23280 37.089 213 122 5 41 250 39 242 1.33e-31 122
MS.gene93419.t1 AT4G23200 31.308 214 142 2 41 249 30 243 7.10e-31 119
MS.gene93419.t1 AT4G23200 31.308 214 142 2 41 249 30 243 1.62e-30 119
MS.gene93419.t1 AT4G21400 35.429 175 109 2 78 251 56 227 1.04e-29 117
MS.gene93419.t1 AT4G23150 36.449 214 125 7 41 250 39 245 1.23e-29 117
MS.gene93419.t1 AT4G00970 38.378 185 104 5 66 246 79 257 1.57e-29 116
MS.gene93419.t1 AT4G00970 38.378 185 104 5 66 246 79 257 2.18e-29 116
MS.gene93419.t1 AT4G23130 35.238 210 125 6 45 251 44 245 1.35e-27 111
MS.gene93419.t1 AT4G23130 35.238 210 125 6 45 251 44 245 1.39e-27 111
MS.gene93419.t1 AT4G23130 35.238 210 125 6 45 251 44 245 1.52e-27 111
MS.gene93419.t1 AT4G23250 29.915 234 142 5 32 250 30 256 4.14e-27 110
MS.gene93419.t1 AT4G23250 29.915 234 142 5 32 250 30 256 4.72e-27 109
MS.gene93419.t1 AT4G23250 29.915 234 142 5 32 250 30 256 5.40e-27 109
MS.gene93419.t1 AT4G23250 26.471 204 125 4 47 250 741 919 5.29e-15 74.7
MS.gene93419.t1 AT4G23140 34.722 216 126 7 41 250 40 246 6.58e-27 109
MS.gene93419.t1 AT4G23140 34.722 216 126 7 41 250 40 246 7.84e-27 108
MS.gene93419.t1 AT4G23230 35.047 214 126 7 41 250 37 241 2.52e-26 107
MS.gene93419.t1 AT3G45860 35.648 216 122 6 41 250 43 247 6.21e-26 106
MS.gene93419.t1 AT4G11530 27.451 255 163 5 4 249 5 246 2.90e-25 104
MS.gene93419.t1 AT4G11460 29.545 220 145 4 39 249 32 250 5.26e-25 103
MS.gene93419.t1 AT4G11460 29.545 220 145 4 39 249 32 250 5.27e-25 103
MS.gene93419.t1 AT4G23210 28.761 226 143 4 37 249 30 250 1.13e-24 102
MS.gene93419.t1 AT4G23210 28.761 226 143 4 37 249 30 250 1.51e-24 102
MS.gene93419.t1 AT4G23210 28.761 226 143 4 37 249 30 250 1.51e-24 102
MS.gene93419.t1 AT4G23210 28.761 226 143 4 37 249 30 250 1.52e-24 102
MS.gene93419.t1 AT4G23210 28.761 226 143 4 37 249 30 250 1.57e-24 102
MS.gene93419.t1 AT4G23310 34.928 209 124 6 45 250 156 355 1.87e-24 102
MS.gene93419.t1 AT4G23310 34.928 209 124 6 45 250 156 355 1.92e-24 102
MS.gene93419.t1 AT4G20640 30.315 254 165 6 5 251 7 255 2.35e-24 98.2
MS.gene93419.t1 AT4G20580 30.315 254 165 6 5 251 7 255 2.35e-24 98.2
MS.gene93419.t1 AT4G20610 30.315 254 165 6 5 251 7 255 2.35e-24 98.2
MS.gene93419.t1 AT4G20630 30.315 254 165 6 5 251 7 255 2.35e-24 98.2
MS.gene93419.t1 AT4G20620 30.315 254 165 6 5 251 7 255 2.35e-24 98.2
MS.gene93419.t1 AT4G20590 30.315 254 165 6 5 251 7 255 2.35e-24 98.2
MS.gene93419.t1 AT4G20600 30.315 254 165 6 5 251 7 255 2.35e-24 98.2
MS.gene93419.t1 AT4G20670 30.315 254 165 6 5 251 7 255 2.36e-24 98.6
MS.gene93419.t1 AT4G20570 30.315 254 165 6 5 251 21 269 2.76e-24 98.2
MS.gene93419.t1 AT4G20560 30.315 254 165 6 5 251 21 269 2.76e-24 98.2
MS.gene93419.t1 AT4G20645 30.315 254 165 6 5 251 21 269 2.76e-24 98.2
MS.gene93419.t1 AT4G20550 30.315 254 165 6 5 251 21 269 2.76e-24 98.2
MS.gene93419.t1 AT4G20530 30.315 254 165 6 5 251 21 269 2.76e-24 98.2
MS.gene93419.t1 AT4G20540 30.315 254 165 6 5 251 21 269 2.76e-24 98.2
MS.gene93419.t1 AT4G23270 31.429 245 154 7 10 250 6 240 3.19e-24 101
MS.gene93419.t1 AT4G23270 31.429 245 154 7 10 250 6 240 3.19e-24 101
MS.gene93419.t1 AT4G23300 28.761 226 143 4 37 249 30 250 3.39e-24 101
MS.gene93419.t1 AT3G58310 28.854 253 165 7 6 252 13 256 3.59e-24 97.8
MS.gene93419.t1 AT4G23270 31.429 245 154 7 10 250 6 240 3.80e-24 101
MS.gene93419.t1 AT4G23240 30.918 207 138 3 47 250 41 245 5.85e-24 100
MS.gene93419.t1 AT5G48540 28.279 244 160 6 11 250 9 241 1.25e-23 96.3
MS.gene93419.t1 AT4G23190 28.959 221 147 4 37 249 30 248 1.57e-23 99.8
MS.gene93419.t1 AT4G23190 28.959 221 147 4 37 249 30 248 1.57e-23 99.4
MS.gene93419.t1 AT3G21990 30.204 245 158 6 13 251 18 255 1.73e-23 95.9
MS.gene93419.t1 AT2G31620 29.358 218 145 4 36 249 40 252 3.19e-23 95.1
MS.gene93419.t1 AT4G11521 27.313 227 157 3 28 249 18 241 5.87e-23 94.7
MS.gene93419.t1 AT4G04500 28.910 211 135 5 55 252 47 255 2.95e-21 92.8
MS.gene93419.t1 AT4G04500 28.910 211 135 5 55 252 47 255 2.95e-21 92.8
MS.gene93419.t1 AT4G04500 28.910 211 135 5 55 252 47 255 3.10e-21 92.8
MS.gene93419.t1 AT4G11490 27.523 218 148 2 10 222 8 220 4.05e-21 92.4
MS.gene93419.t1 AT1G61750 29.224 219 148 4 29 245 28 241 1.05e-20 89.7
MS.gene93419.t1 AT3G21960 29.730 222 144 5 36 251 46 261 1.09e-20 88.6
MS.gene93419.t1 AT4G21410 41.732 127 71 2 127 251 1 126 2.51e-20 90.1
MS.gene93419.t1 AT4G23260 26.009 223 158 3 32 249 30 250 5.61e-20 89.4
MS.gene93419.t1 AT4G23260 26.009 223 158 3 32 249 30 250 6.63e-20 89.0
MS.gene93419.t1 AT4G21400 38.095 126 77 1 127 251 1 126 6.95e-20 89.0
MS.gene93419.t1 AT3G21910 28.251 223 144 7 38 249 48 265 3.42e-19 84.7
MS.gene93419.t1 AT3G21940 34.973 183 96 6 88 252 3 180 8.89e-19 81.6
MS.gene93419.t1 AT3G21940 30.935 278 148 12 5 252 12 275 9.02e-19 83.6
MS.gene93419.t1 AT4G04570 28.972 214 142 5 45 250 40 251 2.34e-18 84.3
MS.gene93419.t1 AT4G04570 28.972 214 142 5 45 250 40 251 2.44e-18 84.3
MS.gene93419.t1 AT4G11480 22.115 208 154 3 45 249 36 238 2.63e-18 84.0
MS.gene93419.t1 AT4G23290 28.507 221 144 7 38 249 31 246 3.03e-18 84.3
MS.gene93419.t1 AT4G11480 22.222 207 153 3 46 249 37 238 3.39e-18 84.0
MS.gene93419.t1 AT4G11480 22.222 207 153 3 46 249 37 238 3.63e-18 84.0
MS.gene93419.t1 AT4G11480 22.222 207 153 3 46 249 37 238 3.72e-18 84.0
MS.gene93419.t1 AT5G41290 26.122 245 167 9 9 247 8 244 4.54e-18 81.6
MS.gene93419.t1 AT4G11460 30.114 176 113 4 83 249 1 175 6.27e-18 83.2
MS.gene93419.t1 AT3G21920 29.004 231 136 8 37 249 47 267 1.32e-17 80.5
MS.gene93419.t1 AT3G21920 29.004 231 136 8 37 249 69 289 1.67e-17 80.5
MS.gene93419.t1 AT1G63600 28.272 191 115 4 67 245 72 252 3.02e-17 80.1
MS.gene93419.t1 AT1G70690 25.000 248 161 9 3 245 6 233 4.64e-17 79.3
MS.gene93419.t1 AT4G23190 28.488 172 114 3 85 249 1 170 5.96e-17 80.1
MS.gene93419.t1 AT4G23190 28.488 172 114 3 85 249 1 170 5.96e-17 80.1
MS.gene93419.t1 AT3G21930 28.571 231 137 8 37 249 47 267 6.14e-17 78.6
MS.gene93419.t1 AT3G29040 29.032 248 158 8 12 249 13 252 1.22e-16 77.4
MS.gene93419.t1 AT1G63550 24.444 225 140 4 36 246 37 245 1.29e-16 78.2
MS.gene93419.t1 AT3G22010 28.261 230 136 9 38 252 48 263 1.60e-16 77.0
MS.gene93419.t1 AT4G04540 24.889 225 154 6 39 250 32 254 3.49e-16 77.8
MS.gene93419.t1 AT4G04540 24.889 225 154 6 39 250 32 254 4.15e-16 77.8
MS.gene93419.t1 AT4G04540 24.889 225 154 6 39 250 32 254 4.26e-16 77.8
MS.gene93419.t1 AT4G04540 24.889 225 154 6 39 250 32 254 4.39e-16 77.8
MS.gene93419.t1 AT4G11470 26.291 213 144 6 47 250 43 251 6.13e-16 77.4
MS.gene93419.t1 AT4G11470 26.291 213 144 6 47 250 38 246 6.17e-16 77.4
MS.gene93419.t1 AT1G63570 26.984 189 117 3 68 246 64 241 6.41e-16 75.9
MS.gene93419.t1 AT1G63570 26.984 189 117 3 68 246 64 241 6.41e-16 75.9
MS.gene93419.t1 AT3G22040 26.432 227 142 7 38 252 44 257 6.70e-16 75.5
MS.gene93419.t1 AT1G63570 26.984 189 117 3 68 246 117 294 8.69e-16 75.9
MS.gene93419.t1 AT4G04490 28.017 232 144 9 29 249 27 246 1.81e-15 75.9
MS.gene93419.t1 AT4G04510 26.244 221 146 4 41 250 34 248 1.84e-15 75.9
MS.gene93419.t1 AT4G04510 26.244 221 146 4 41 250 36 250 1.95e-15 75.9
MS.gene93419.t1 AT3G22050 29.293 198 110 7 67 249 73 255 5.70e-15 72.8
MS.gene93419.t1 AT4G20680 28.444 225 144 8 39 252 49 267 6.90e-15 72.8
MS.gene93419.t1 AT5G41280 26.230 183 126 4 68 246 67 244 8.25e-15 72.8
MS.gene93419.t1 AT3G21970 27.692 260 165 10 4 249 11 261 1.89e-14 71.2
MS.gene93419.t1 AT2G01660 26.744 258 151 11 1 247 2 232 1.98e-14 71.2
MS.gene93419.t1 AT2G01660 26.744 258 151 11 1 247 2 232 2.63e-14 71.2
MS.gene93419.t1 AT3G29050 26.054 261 160 9 13 249 22 273 2.68e-14 71.2
MS.gene93419.t1 AT2G01660 26.744 258 151 11 1 247 2 232 2.93e-14 71.2
MS.gene93419.t1 AT3G22000 28.696 230 137 10 39 252 49 267 3.13e-14 70.9
MS.gene93419.t1 AT5G41300 25.514 243 161 7 10 244 15 245 7.89e-14 70.1
MS.gene93419.t1 AT3G21900 24.900 249 175 6 1 249 11 247 2.16e-13 68.6
MS.gene93419.t1 AT1G63590 26.000 200 125 6 59 245 55 244 3.08e-13 68.2
MS.gene93419.t1 AT1G63580 24.528 212 138 4 46 245 36 237 4.47e-13 67.8

Find 40 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTGTTGGTACAATATTT+TGG 0.104488 1.1:-75985265 None:intergenic
TATTCAGACCGTTCGATATT+AGG 0.205684 1.1:+75984983 MS.gene93419:CDS
ATGAGAATGAGGAAGGAATA+TGG 0.272162 1.1:-75984617 None:intergenic
TGCTTTAGGTTTGATAGAAT+TGG 0.336798 1.1:-75985336 None:intergenic
GGTTTACTTTGTCCTCGTTT+TGG 0.340580 1.1:-75984817 None:intergenic
AGACATTTGCGACAATCTTC+AGG 0.362672 1.1:-75984869 None:intergenic
GGTTTCTACAATACAAATTA+CGG 0.363088 1.1:+75984794 MS.gene93419:CDS
AGTAGTGATCAAACAATATA+TGG 0.388142 1.1:+75985169 MS.gene93419:CDS
TGGACATGCTTGTGTTAGAT+AGG 0.389375 1.1:-75984906 None:intergenic
AAATATTGTACCAACAAGAT+TGG 0.404642 1.1:+75985268 MS.gene93419:CDS
AATTCTACAACCAATCTTGT+TGG 0.410248 1.1:-75985278 None:intergenic
TTAGAGCAAGCTGTTATTTG+AGG 0.415196 1.1:+75985302 MS.gene93419:CDS
AAATGTGGCCTGCTATAATT+TGG 0.425646 1.1:+75985014 MS.gene93419:CDS
ACAGTGTACACCTGATTTGT+CGG 0.437811 1.1:+75985198 MS.gene93419:CDS
CCAAACAGAAAAGAAGCAAT+TGG 0.439075 1.1:+75984926 MS.gene93419:CDS
CGTTTACTTTAGATGTGAAA+AGG 0.440701 1.1:-75984643 None:intergenic
CACTGTGAAACCGACAAATC+AGG 0.458317 1.1:-75985208 None:intergenic
TGAGAATGAGGAAGGAATAT+GGG 0.476426 1.1:-75984616 None:intergenic
GAATGTGAACAATGCAACTT+TGG 0.483957 1.1:+75985039 MS.gene93419:CDS
TATATTGTTTGATCACTACT+AGG 0.502209 1.1:-75985166 None:intergenic
GAGGACAAAGTAAACCTCAT+TGG 0.502261 1.1:+75984824 MS.gene93419:CDS
TATGCTGCAGGAACTTTGCC+AGG 0.503711 1.1:+75985142 MS.gene93419:CDS
TTCAACTCAAAAGTTAACTA+CGG 0.507432 1.1:+75984773 MS.gene93419:CDS
GATAGAGGCGACTACATAAC+CGG 0.514752 1.1:+75984704 MS.gene93419:CDS
GTTGTTATGGTAGGTACTAC+CGG 0.518720 1.1:-75984723 None:intergenic
TGAAAAGGATTATGAGAATG+AGG 0.532845 1.1:-75984628 None:intergenic
ACATTCCACCAAATTATAGC+AGG 0.535057 1.1:-75985022 None:intergenic
AAGGATTATGAGAATGAGGA+AGG 0.539148 1.1:-75984624 None:intergenic
TCACATCGTAAGTATGCTGC+AGG 0.560986 1.1:+75985130 MS.gene93419:CDS
TGTGGCCTGCTATAATTTGG+TGG 0.578852 1.1:+75985017 MS.gene93419:CDS
GGCAGATCAATTCAATAGTG+TGG 0.581827 1.1:+75985060 MS.gene93419:CDS
CTCCTCTACATATTCCAATG+AGG 0.587463 1.1:-75984838 None:intergenic
CGCTGAGGCCTAATATCGAA+CGG 0.598988 1.1:-75984991 None:intergenic
AACCTCATTGGAATATGTAG+AGG 0.614721 1.1:+75984836 MS.gene93419:CDS
ACAGAAAAGAAGCAATTGGA+TGG 0.618085 1.1:+75984930 MS.gene93419:CDS
GTTTGATCACTACTAGGACC+TGG 0.622316 1.1:-75985160 None:intergenic
TATTAGGCCTCAGCGAAATG+TGG 0.638853 1.1:+75984999 MS.gene93419:CDS
TACAAATTACGGCCAAAACG+AGG 0.648241 1.1:+75984805 MS.gene93419:CDS
AGAAGCAATTGGATGGTACG+AGG 0.694836 1.1:+75984937 MS.gene93419:CDS
TAGCAGGCCACATTTCGCTG+AGG 0.701616 1.1:-75985006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTGAATGATTTAAAAAACA+AGG + chr1.1:75985093-75985112 MS.gene93419:CDS 20.0%
! AAATATTGTACCAACAAGAT+TGG + chr1.1:75985268-75985287 MS.gene93419:CDS 25.0%
! AGTAGTGATCAAACAATATA+TGG + chr1.1:75985169-75985188 MS.gene93419:CDS 25.0%
! GGTTTCTACAATACAAATTA+CGG + chr1.1:75984794-75984813 MS.gene93419:CDS 25.0%
! TATATTGTTTGATCACTACT+AGG - chr1.1:75985169-75985188 None:intergenic 25.0%
! TTAAAAAACAAGGCTAGAAA+TGG + chr1.1:75985103-75985122 MS.gene93419:CDS 25.0%
! TTCAACTCAAAAGTTAACTA+CGG + chr1.1:75984773-75984792 MS.gene93419:CDS 25.0%
!! ATCTTGTTGGTACAATATTT+TGG - chr1.1:75985268-75985287 None:intergenic 25.0%
!! TCTTGTTGGTACAATATTTT+GGG - chr1.1:75985267-75985286 None:intergenic 25.0%
!!! GTTATTTTTGTCACATAAGT+AGG - chr1.1:75984684-75984703 None:intergenic 25.0%
AATTCTACAACCAATCTTGT+TGG - chr1.1:75985281-75985300 None:intergenic 30.0%
CGTTTACTTTAGATGTGAAA+AGG - chr1.1:75984646-75984665 None:intergenic 30.0%
TGAAAAGGATTATGAGAATG+AGG - chr1.1:75984631-75984650 None:intergenic 30.0%
TGTGACAAAAATAACGATAG+AGG + chr1.1:75984689-75984708 MS.gene93419:CDS 30.0%
!!! TAACTTTTGAGTTGAAAGTG+AGG - chr1.1:75984769-75984788 None:intergenic 30.0%
AAATGTGGCCTGCTATAATT+TGG + chr1.1:75985014-75985033 MS.gene93419:CDS 35.0%
AACCTCATTGGAATATGTAG+AGG + chr1.1:75984836-75984855 MS.gene93419:CDS 35.0%
AAGGATTATGAGAATGAGGA+AGG - chr1.1:75984627-75984646 None:intergenic 35.0%
ACAGAAAAGAAGCAATTGGA+TGG + chr1.1:75984930-75984949 MS.gene93419:CDS 35.0%
ACATTCCACCAAATTATAGC+AGG - chr1.1:75985025-75985044 None:intergenic 35.0%
ATGAGAATGAGGAAGGAATA+TGG - chr1.1:75984620-75984639 None:intergenic 35.0%
CCAAACAGAAAAGAAGCAAT+TGG + chr1.1:75984926-75984945 MS.gene93419:CDS 35.0%
GAATGTGAACAATGCAACTT+TGG + chr1.1:75985039-75985058 MS.gene93419:CDS 35.0%
TATTCAGACCGTTCGATATT+AGG + chr1.1:75984983-75985002 MS.gene93419:CDS 35.0%
TGAGAATGAGGAAGGAATAT+GGG - chr1.1:75984619-75984638 None:intergenic 35.0%
! CCAATTGCTTCTTTTCTGTT+TGG - chr1.1:75984929-75984948 None:intergenic 35.0%
! GGTATATGAAAGCGATTTTG+AGG - chr1.1:75984748-75984767 None:intergenic 35.0%
! TTAGAGCAAGCTGTTATTTG+AGG + chr1.1:75985302-75985321 MS.gene93419:CDS 35.0%
!!! AAGCGATTTTGAGGTTGTTA+TGG - chr1.1:75984739-75984758 None:intergenic 35.0%
!!! GATTTTGAGGTTGTTATGGT+AGG - chr1.1:75984735-75984754 None:intergenic 35.0%
AGACATTTGCGACAATCTTC+AGG - chr1.1:75984872-75984891 None:intergenic 40.0%
CTCCTCTACATATTCCAATG+AGG - chr1.1:75984841-75984860 None:intergenic 40.0%
GAGGACAAAGTAAACCTCAT+TGG + chr1.1:75984824-75984843 MS.gene93419:CDS 40.0%
GGCAGATCAATTCAATAGTG+TGG + chr1.1:75985060-75985079 MS.gene93419:CDS 40.0%
GTTGTTATGGTAGGTACTAC+CGG - chr1.1:75984726-75984745 None:intergenic 40.0%
TACAAATTACGGCCAAAACG+AGG + chr1.1:75984805-75984824 MS.gene93419:CDS 40.0%
TGGACATGCTTGTGTTAGAT+AGG - chr1.1:75984909-75984928 None:intergenic 40.0%
! ACAGTGTACACCTGATTTGT+CGG + chr1.1:75985198-75985217 MS.gene93419:CDS 40.0%
! GGTTTACTTTGTCCTCGTTT+TGG - chr1.1:75984820-75984839 None:intergenic 40.0%
AGAAGCAATTGGATGGTACG+AGG + chr1.1:75984937-75984956 MS.gene93419:CDS 45.0%
CACTGTGAAACCGACAAATC+AGG - chr1.1:75985211-75985230 None:intergenic 45.0%
GATAGAGGCGACTACATAAC+CGG + chr1.1:75984704-75984723 MS.gene93419:CDS 45.0%
GTTTGATCACTACTAGGACC+TGG - chr1.1:75985163-75985182 None:intergenic 45.0%
TATTAGGCCTCAGCGAAATG+TGG + chr1.1:75984999-75985018 MS.gene93419:CDS 45.0%
TCACATCGTAAGTATGCTGC+AGG + chr1.1:75985130-75985149 MS.gene93419:CDS 45.0%
TGTGGCCTGCTATAATTTGG+TGG + chr1.1:75985017-75985036 MS.gene93419:CDS 45.0%
CGCTGAGGCCTAATATCGAA+CGG - chr1.1:75984994-75985013 None:intergenic 50.0%
TATGCTGCAGGAACTTTGCC+AGG + chr1.1:75985142-75985161 MS.gene93419:CDS 50.0%
TAGCAGGCCACATTTCGCTG+AGG - chr1.1:75985009-75985028 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 75984596 75985354 75984596 ID=MS.gene93419
chr1.1 mRNA 75984596 75985354 75984596 ID=MS.gene93419.t1;Parent=MS.gene93419
chr1.1 exon 75984596 75985354 75984596 ID=MS.gene93419.t1.exon1;Parent=MS.gene93419.t1
chr1.1 CDS 75984596 75985354 75984596 ID=cds.MS.gene93419.t1;Parent=MS.gene93419.t1
Gene Sequence

>MS.gene93419

ATGGCTACTATTTCTGTAATCCCATATTCCTTCCTCATTCTCATAATCCTTTTCACATCTAAAGTAAACGCAGATGACGAGTTCACCTACTTATGTGACAAAAATAACGATAGAGGCGACTACATAACCGGTAGTACCTACCATAACAACCTCAAAATCGCTTTCATATACCTCACTTTCAACTCAAAAGTTAACTACGGTTTCTACAATACAAATTACGGCCAAAACGAGGACAAAGTAAACCTCATTGGAATATGTAGAGGAGACATTAATCCTGAAGATTGTCGCAAATGTCTCGTTAGTTCAAAATCCTATCTAACACAAGCATGTCCAAACAGAAAAGAAGCAATTGGATGGTACGAGGCTGATCAGAAATGCATGTTGCGTTATTCAGACCGTTCGATATTAGGCCTCAGCGAAATGTGGCCTGCTATAATTTGGTGGAATGTGAACAATGCAACTTTGGCAGATCAATTCAATAGTGTGGTGAAACAATTGTTGAATGATTTAAAAAACAAGGCTAGAAATGGTGACTCACATCGTAAGTATGCTGCAGGAACTTTGCCAGGTCCTAGTAGTGATCAAACAATATATGGTCTTGTACAGTGTACACCTGATTTGTCGGTTTCACAGTGTGATGACTGTTTGAATGAATCTATTGCTGAAGTCCCAAAATATTGTACCAACAAGATTGGTTGTAGAATTTTTAGAGCAAGCTGTTATTTGAGGTTTGAAACTCACCAATTCTATCAAACCTAA
Protein sequence

>MS.gene93419.t1

MATISVIPYSFLILIILFTSKVNADDEFTYLCDKNNDRGDYITGSTYHNNLKIAFIYLTFNSKVNYGFYNTNYGQNEDKVNLIGICRGDINPEDCRKCLVSSKSYLTQACPNRKEAIGWYEADQKCMLRYSDRSILGLSEMWPAIIWWNVNNATLADQFNSVVKQLLNDLKNKARNGDSHRKYAAGTLPGPSSDQTIYGLVQCTPDLSVSQCDDCLNESIAEVPKYCTNKIGCRIFRASCYLRFETHQFYQT