Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93470.t1 | XP_013452118.1 | 96.2 | 761 | 25 | 2 | 1 | 757 | 1 | 761 | 0.00E+00 | 1389 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93470.t1 | F4I4B6 | 64.4 | 753 | 248 | 8 | 12 | 755 | 6 | 747 | 2.6e-255 | 882.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93470.t1 | A0A072U9N7 | 96.2 | 761 | 25 | 2 | 1 | 757 | 1 | 761 | 0.0e+00 | 1389.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067568 | MS.gene93470 | PPI |
| MS.gene006891 | MS.gene93470 | PPI |
| MS.gene56433 | MS.gene93470 | PPI |
| MS.gene006890 | MS.gene93470 | PPI |
| MS.gene059432 | MS.gene93470 | PPI |
| MS.gene059433 | MS.gene93470 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93470.t1 | MTR_6g045363 | 96.189 | 761 | 25 | 2 | 1 | 757 | 1 | 761 | 0.0 | 1495 |
| MS.gene93470.t1 | MTR_1g111120 | 88.477 | 755 | 81 | 3 | 3 | 752 | 1 | 754 | 0.0 | 1319 |
| MS.gene93470.t1 | MTR_4g005930 | 56.746 | 756 | 304 | 12 | 14 | 757 | 8 | 752 | 0.0 | 761 |
| MS.gene93470.t1 | MTR_4g083940 | 35.027 | 728 | 430 | 18 | 45 | 747 | 18 | 727 | 4.99e-115 | 365 |
| MS.gene93470.t1 | MTR_1g069620 | 24.800 | 750 | 498 | 16 | 11 | 735 | 21 | 729 | 3.44e-47 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93470.t1 | AT1G10385 | 63.984 | 758 | 243 | 9 | 12 | 755 | 6 | 747 | 0.0 | 930 |
| MS.gene93470.t1 | AT5G49830 | 55.767 | 737 | 300 | 11 | 26 | 752 | 15 | 735 | 0.0 | 738 |
| MS.gene93470.t1 | AT5G49830 | 53.455 | 767 | 302 | 10 | 26 | 752 | 15 | 766 | 0.0 | 721 |
| MS.gene93470.t1 | AT5G49830 | 55.966 | 704 | 287 | 8 | 58 | 752 | 108 | 797 | 0.0 | 711 |
| MS.gene93470.t1 | AT1G10180 | 33.333 | 720 | 419 | 17 | 45 | 737 | 18 | 703 | 1.62e-109 | 351 |
Find 132 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAATTCTCAAATGTATT+TGG | 0.109776 | 6.4:-29713786 | MS.gene93470:CDS |
| ATAATTTGTGCAGCTTTATT+TGG | 0.153853 | 6.4:-29712623 | MS.gene93470:intron |
| ATGCAGCTTGGTTGGATAAA+AGG | 0.227929 | 6.4:+29715923 | None:intergenic |
| TTATCTTGTTGAACTTAAAA+AGG | 0.231865 | 6.4:-29716646 | MS.gene93470:CDS |
| CTCATTCATGCTACGTGATT+TGG | 0.272588 | 6.4:+29717695 | None:intergenic |
| CTTTAGCTTCTGCTGATGAT+TGG | 0.309010 | 6.4:-29715078 | MS.gene93470:CDS |
| TATGTCCGAATCTTCGTTTC+CGG | 0.317633 | 6.4:+29715855 | None:intergenic |
| CTCAAGATCTGAAATCTCTT+TGG | 0.319417 | 6.4:+29715969 | None:intergenic |
| GACATTGAACGAACTCCTTT+AGG | 0.333382 | 6.4:-29713264 | MS.gene93470:CDS |
| ATTGATGCTGTTGCTGCTAC+AGG | 0.334893 | 6.4:-29712511 | MS.gene93470:CDS |
| GTGAATTCTCAAATGTATTT+GGG | 0.341029 | 6.4:-29713785 | MS.gene93470:CDS |
| ATCTCTGCGCGGCGTGTTGA+TGG | 0.349127 | 6.4:+29715577 | None:intergenic |
| CTTATCACTGAGAGTGAGAT+TGG | 0.350371 | 6.4:+29717767 | None:intergenic |
| ATTGCTATAAGGATGTTAAC+TGG | 0.360913 | 6.4:-29711838 | MS.gene93470:CDS |
| CAAATTCAACTCAATGGTTC+AGG | 0.391880 | 6.4:-29714948 | MS.gene93470:intron |
| TTTGTGATGACCAAGCCTTT+TGG | 0.405521 | 6.4:-29713290 | MS.gene93470:CDS |
| TCACTCTCAGTGATAAGCTT+AGG | 0.406393 | 6.4:-29717761 | MS.gene93470:CDS |
| GAGACCTGAATGGTTTCCTT+CGG | 0.406774 | 6.4:-29713744 | MS.gene93470:CDS |
| TTACAGAAACAGTGATACTA+TGG | 0.408367 | 6.4:-29713314 | MS.gene93470:CDS |
| TGAAGTGCTCGAAACAAACT+TGG | 0.410187 | 6.4:+29715661 | None:intergenic |
| GAACTCATCTTCACAGTAGA+TGG | 0.412621 | 6.4:-29713818 | MS.gene93470:CDS |
| AAGTTTCTGAAATTGCTATA+AGG | 0.414310 | 6.4:-29711849 | MS.gene93470:CDS |
| AGGTCCTCTTGGCCTTCAAC+AGG | 0.416523 | 6.4:-29713244 | MS.gene93470:intron |
| TTCTTCAGTTCACGCTGCTC+CGG | 0.416915 | 6.4:+29713899 | None:intergenic |
| TCCACTTGAAATCCTACAAT+TGG | 0.420645 | 6.4:-29714194 | MS.gene93470:CDS |
| AGACCTGAATGGTTTCCTTC+GGG | 0.421720 | 6.4:-29713743 | MS.gene93470:CDS |
| CACTCTCAGTGATAAGCTTA+GGG | 0.423280 | 6.4:-29717760 | MS.gene93470:CDS |
| CGAACTCCTTTAGGTCCTCT+TGG | 0.424056 | 6.4:-29713255 | MS.gene93470:CDS |
| GTGCAAGTCCATCCAATTGT+AGG | 0.424062 | 6.4:+29714182 | None:intergenic |
| AGGCGAGAATCCGTTTCTTA+AGG | 0.426489 | 6.4:+29715281 | None:intergenic |
| ATTCCCGAAGGAAACCATTC+AGG | 0.427039 | 6.4:+29713740 | None:intergenic |
| ATTTGGGTATGGAGGAGAAA+GGG | 0.435406 | 6.4:-29713769 | MS.gene93470:CDS |
| TTCTCAAATGTATTTGGGTA+TGG | 0.441886 | 6.4:-29713780 | MS.gene93470:CDS |
| ACTACCAGGAAAAGCAATAC+TGG | 0.442061 | 6.4:-29715037 | MS.gene93470:CDS |
| AAACTAGAATAAGAAGAAAC+AGG | 0.443054 | 6.4:+29715007 | None:intergenic |
| GTTGGATAAAAGGTTTCTCA+TGG | 0.445565 | 6.4:+29715933 | None:intergenic |
| AAACTTTCACATAGCACAAA+AGG | 0.453898 | 6.4:-29713965 | MS.gene93470:CDS |
| AGGGTGTCAACTTGGTTCCT+TGG | 0.459354 | 6.4:-29715881 | MS.gene93470:CDS |
| CTCGCCTCCATAGCTGCATC+AGG | 0.461895 | 6.4:-29715265 | MS.gene93470:CDS |
| TGGTTATGCGTGGGCTGATC+CGG | 0.466646 | 6.4:+29711771 | None:intergenic |
| TTGGATGGACTTGCACTAGA+AGG | 0.467374 | 6.4:-29714175 | MS.gene93470:CDS |
| CTTGATGAAACGGATCCTCT+TGG | 0.476487 | 6.4:+29717816 | None:intergenic |
| ACTTCCAATGCTTGATGAAA+CGG | 0.477793 | 6.4:+29717806 | None:intergenic |
| TACGTATATACATACCTGTT+GGG | 0.478520 | 6.4:+29712481 | None:intergenic |
| TCTCAGCTAATAGAACATCA+AGG | 0.478648 | 6.4:+29715764 | None:intergenic |
| TTTCGCTTCTCCTTAAGAAA+CGG | 0.479033 | 6.4:-29715291 | MS.gene93470:CDS |
| TTTATCCAACCAAGCTGCAT+TGG | 0.482858 | 6.4:-29715920 | MS.gene93470:CDS |
| AGTAACACTCTACCTGTTGA+AGG | 0.484999 | 6.4:+29713232 | None:intergenic |
| TTGGAAGCAACATAGGCATT+CGG | 0.488441 | 6.4:+29717714 | None:intergenic |
| TCGTTCAATGTCATCCCAAA+AGG | 0.488799 | 6.4:+29713275 | None:intergenic |
| CTACAGGGCTAGATCCCAAC+AGG | 0.491377 | 6.4:-29712495 | MS.gene93470:intron |
| TGCTCACAAATTCAACTCAA+TGG | 0.494222 | 6.4:-29714954 | MS.gene93470:CDS |
| CAAAGAGATTTCAGATCTTG+AGG | 0.497575 | 6.4:-29715968 | MS.gene93470:CDS |
| ATACATCTGAGCTAGTAACT+TGG | 0.498432 | 6.4:-29715336 | MS.gene93470:CDS |
| CAACTTGGTTCCTTGGTGAC+CGG | 0.498514 | 6.4:-29715874 | MS.gene93470:CDS |
| TATTGCATCAGATGTATTTG+TGG | 0.499043 | 6.4:-29713373 | MS.gene93470:CDS |
| AGATCAAATCAAAATGTCAA+TGG | 0.501515 | 6.4:-29717859 | None:intergenic |
| GAAAAGAGTGGAAGAATCAA+TGG | 0.504829 | 6.4:-29715743 | MS.gene93470:CDS |
| ATCTGATGTTGCTTGCGAAA+TGG | 0.505062 | 6.4:+29715393 | None:intergenic |
| ACGAGATAAGTAACGACCTT+GGG | 0.505768 | 6.4:+29712573 | None:intergenic |
| TCAACAAACCACTCATCCTC+TGG | 0.505796 | 6.4:+29711871 | None:intergenic |
| AAGACCTCCTGATGCAGCTA+TGG | 0.508161 | 6.4:+29715258 | None:intergenic |
| ATGGACCAATGCAGCTTGGT+TGG | 0.513222 | 6.4:+29715915 | None:intergenic |
| TTCATCTACATTGTCGAAGA+CGG | 0.514420 | 6.4:+29711810 | None:intergenic |
| TTGGTCCATGGTTTAGCAGA+AGG | 0.516143 | 6.4:-29715901 | MS.gene93470:CDS |
| TTCAGTTCACGCTGCTCCGG+AGG | 0.517477 | 6.4:+29713902 | None:intergenic |
| CTAATTACTCTGCCTTCATA+CGG | 0.517767 | 6.4:-29716590 | MS.gene93470:intron |
| ATTGCATCAGATGTATTTGT+GGG | 0.518591 | 6.4:-29713372 | MS.gene93470:CDS |
| TGAGCACTGATTGAAAGCTT+AGG | 0.519082 | 6.4:+29714971 | None:intergenic |
| TCAATGGCTGCTTTAGAAGA+AGG | 0.521248 | 6.4:-29715727 | MS.gene93470:CDS |
| TTCTCAGTGACAGCTGAACC+TGG | 0.521769 | 6.4:+29714103 | None:intergenic |
| TTTGGGTATGGAGGAGAAAG+GGG | 0.523161 | 6.4:-29713768 | MS.gene93470:CDS |
| CTTGAAATCCTACAATTGGA+TGG | 0.527185 | 6.4:-29714190 | MS.gene93470:CDS |
| CTCAGCTAATAGAACATCAA+GGG | 0.528051 | 6.4:+29715765 | None:intergenic |
| CGAAGATACTCACCGTATGA+AGG | 0.528303 | 6.4:+29716578 | None:intergenic |
| TTGCTTATGCACCAACTACC+AGG | 0.528478 | 6.4:-29715051 | MS.gene93470:CDS |
| ATCAGATGTATTTGTGGGAA+GGG | 0.529411 | 6.4:-29713367 | MS.gene93470:CDS |
| ATGTATTTGTGGGAAGGGAA+AGG | 0.531950 | 6.4:-29713362 | MS.gene93470:CDS |
| CAATGTCATCCCAAAAGGCT+TGG | 0.532254 | 6.4:+29713280 | None:intergenic |
| AACCAAGCTGCATTGGTCCA+TGG | 0.535749 | 6.4:-29715913 | MS.gene93470:CDS |
| GGTGACCGGAAACGAAGATT+CGG | 0.536915 | 6.4:-29715860 | MS.gene93470:CDS |
| AAAGAGATTTCAGATCTTGA+GGG | 0.537696 | 6.4:-29715967 | MS.gene93470:CDS |
| ACTAGCTCAGATGTATATGC+AGG | 0.540210 | 6.4:+29715343 | None:intergenic |
| ACGTGATTTGGAAGCAACAT+AGG | 0.541674 | 6.4:+29717707 | None:intergenic |
| GTAAGTGCTTGCTCAACAAA+TGG | 0.544583 | 6.4:+29715136 | None:intergenic |
| TGACATAGAAATTGAACACT+TGG | 0.545816 | 6.4:+29714146 | None:intergenic |
| CATCAGATGTATTTGTGGGA+AGG | 0.550806 | 6.4:-29713368 | MS.gene93470:CDS |
| TACATTTGAGAATTCACAAG+TGG | 0.553060 | 6.4:+29713791 | None:intergenic |
| TTAGCAGAAGGGTGTCAACT+TGG | 0.553191 | 6.4:-29715889 | MS.gene93470:CDS |
| TGATGCAATAGTTGCCACTT+CGG | 0.553746 | 6.4:+29713386 | None:intergenic |
| TACATCTGAGCTAGTAACTT+GGG | 0.556125 | 6.4:-29715335 | MS.gene93470:CDS |
| AACCATGGACCAATGCAGCT+TGG | 0.558664 | 6.4:+29715911 | None:intergenic |
| TTATGCGTGGGCTGATCCGG+TGG | 0.558689 | 6.4:+29711774 | None:intergenic |
| TTGATGCTGTTGCTGCTACA+GGG | 0.559432 | 6.4:-29712510 | MS.gene93470:CDS |
| TCCAATTGTAGGATTTCAAG+TGG | 0.564153 | 6.4:+29714193 | None:intergenic |
| GACGAGATAAGTAACGACCT+TGG | 0.564155 | 6.4:+29712572 | None:intergenic |
| GGATCCGTTTCATCAAGCAT+TGG | 0.566699 | 6.4:-29717810 | MS.gene93470:CDS |
| CTGTTAATAAATGCAATGCC+AGG | 0.567179 | 6.4:-29714121 | MS.gene93470:CDS |
| CACTGATTGAAAGCTTAGGC+TGG | 0.568514 | 6.4:+29714975 | None:intergenic |
| CTGCGCGGCGTGTTGATGGT+TGG | 0.570497 | 6.4:+29715581 | None:intergenic |
| TGGTCCATGGTTTAGCAGAA+GGG | 0.575463 | 6.4:-29715900 | MS.gene93470:CDS |
| TATGCGTGGGCTGATCCGGT+GGG | 0.579099 | 6.4:+29711775 | None:intergenic |
| TCAGACGATCAACTTCGCGC+TGG | 0.582613 | 6.4:+29713870 | None:intergenic |
| TTGATGACATTGGTTATGCG+TGG | 0.582645 | 6.4:+29711761 | None:intergenic |
| GTGTCTTGCCAGAGGATGAG+TGG | 0.583067 | 6.4:-29711879 | MS.gene93470:CDS |
| TGAAGGCCAAGAGGACCTAA+AGG | 0.583411 | 6.4:+29713249 | None:intergenic |
| CTAAAATGTTTAAGCAACAC+AGG | 0.586893 | 6.4:+29715160 | None:intergenic |
| TCAAATGTATTTGGGTATGG+AGG | 0.587560 | 6.4:-29713777 | MS.gene93470:CDS |
| TTGCTATAAGGATGTTAACT+GGG | 0.588038 | 6.4:-29711837 | MS.gene93470:CDS |
| ACCTCCTGATGCAGCTATGG+AGG | 0.589887 | 6.4:+29715261 | None:intergenic |
| GAAGATGCTTATAGTCCCAC+CGG | 0.590717 | 6.4:-29711790 | MS.gene93470:CDS |
| AGAAAGGGGAGAGACCTGAA+TGG | 0.592954 | 6.4:-29713754 | MS.gene93470:CDS |
| ATCTTCGTTTCCGGTCACCA+AGG | 0.593631 | 6.4:+29715864 | None:intergenic |
| AATAAGAAGAAACAGGAGGT+AGG | 0.594442 | 6.4:+29715014 | None:intergenic |
| TGATGACATTGGTTATGCGT+GGG | 0.604763 | 6.4:+29711762 | None:intergenic |
| GATCCTCTTGGAGTCACGAA+TGG | 0.606168 | 6.4:+29717828 | None:intergenic |
| TATTTGGGTATGGAGGAGAA+AGG | 0.607896 | 6.4:-29713770 | MS.gene93470:CDS |
| AGTAGTAATGTATGAGCTCG+AGG | 0.612329 | 6.4:+29715514 | None:intergenic |
| ACACAACAGATAGCATTGCT+AGG | 0.617403 | 6.4:-29714034 | MS.gene93470:CDS |
| ACTGAGAATCTAGAAAGCAC+AGG | 0.627418 | 6.4:-29714088 | MS.gene93470:CDS |
| GCCTCCATAGCTGCATCAGG+AGG | 0.632896 | 6.4:-29715262 | MS.gene93470:CDS |
| TTACCATTCGTGACTCCAAG+AGG | 0.636630 | 6.4:-29717831 | MS.gene93470:CDS |
| TCTATTAGCTGAGAAAAGAG+TGG | 0.640906 | 6.4:-29715755 | MS.gene93470:CDS |
| ATCACGTAGCATGAATGAGA+AGG | 0.643265 | 6.4:-29717691 | MS.gene93470:intron |
| GACACCCTTCTGCTAAACCA+TGG | 0.644959 | 6.4:+29715896 | None:intergenic |
| TGAATACAGTGTCTTGCCAG+AGG | 0.652440 | 6.4:-29711887 | MS.gene93470:intron |
| TCTACCTGTTGAAGGCCAAG+AGG | 0.664013 | 6.4:+29713240 | None:intergenic |
| CTAGAATAAGAAGAAACAGG+AGG | 0.679447 | 6.4:+29715010 | None:intergenic |
| ATGGCAAAAGAGATTACACA+AGG | 0.699472 | 6.4:-29715697 | MS.gene93470:CDS |
| AGTGTATGCACTAACTGTTG+TGG | 0.728646 | 6.4:+29715444 | None:intergenic |
| GAAAGTTTGATAACAGCACG+CGG | 0.743743 | 6.4:+29713980 | None:intergenic |
| CGGTTGATCGAATCTCTGCG+CGG | 0.781566 | 6.4:+29715566 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+TGG | + | chr6.4:29712303-29712322 | None:intergenic | 0.0% |
| !! | AAATTAAATTTGTATAGAAA+TGG | - | chr6.4:29712390-29712409 | MS.gene93470:intron | 10.0% |
| !!! | AAAGTACTATATTATTATTA+TGG | + | chr6.4:29714801-29714820 | None:intergenic | 10.0% |
| !!! | TATAAAATAGAGTTTTTATT+GGG | + | chr6.4:29713479-29713498 | None:intergenic | 10.0% |
| !!! | TTAAAATTTTTATTCTATGT+TGG | + | chr6.4:29715333-29715352 | None:intergenic | 10.0% |
| !!! | TTATAAAATAGAGTTTTTAT+TGG | + | chr6.4:29713480-29713499 | None:intergenic | 10.0% |
| !! | AAAAATATATAGATATGTTC+TGG | - | chr6.4:29716803-29716822 | MS.gene93470:intron | 15.0% |
| !! | ATATACTACATAAAATTCAA+AGG | + | chr6.4:29713183-29713202 | None:intergenic | 15.0% |
| !! | GATATATAAGAATTTGAAAA+TGG | + | chr6.4:29713073-29713092 | None:intergenic | 15.0% |
| !! | TAAAAAAAAGTAGTATAGAA+AGG | - | chr6.4:29712416-29712435 | MS.gene93470:intron | 15.0% |
| !! | TATATAGGTATTACATAAAA+TGG | + | chr6.4:29715368-29715387 | None:intergenic | 15.0% |
| !! | TATTAAAAACATTATTGGAA+GGG | - | chr6.4:29717084-29717103 | MS.gene93470:intron | 15.0% |
| !!! | ATAAAATAGAGTTTTTATTG+GGG | + | chr6.4:29713478-29713497 | None:intergenic | 15.0% |
| !!! | ATCTATAGAGATTAATTTTT+TGG | - | chr6.4:29712231-29712250 | MS.gene93470:intron | 15.0% |
| !!! | TAATCAAGGTTTAAAATAAA+AGG | + | chr6.4:29713577-29713596 | None:intergenic | 15.0% |
| !!! | TTCTATACAAATTTAATTTG+TGG | + | chr6.4:29712389-29712408 | None:intergenic | 15.0% |
| !!! | TTGGTAATAATTTTAGAAAA+TGG | + | chr6.4:29714927-29714946 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTTGCAATAAATT+GGG | - | chr6.4:29712194-29712213 | MS.gene93470:intron | 15.0% |
| !!! | TTTTTTCTTTTGCAATAAAT+TGG | - | chr6.4:29712193-29712212 | MS.gene93470:intron | 15.0% |
| !! | AAACACTTAGTATTAAAACA+AGG | - | chr6.4:29716614-29716633 | MS.gene93470:CDS | 20.0% |
| !! | AATGTTATGTAAAAATCTTG+AGG | + | chr6.4:29713224-29713243 | None:intergenic | 20.0% |
| !! | ACAATGGTAATAATTTGATA+AGG | - | chr6.4:29716101-29716120 | MS.gene93470:intron | 20.0% |
| !! | ACTATTCTTATATGAAACTA+TGG | + | chr6.4:29716013-29716032 | None:intergenic | 20.0% |
| !! | ATATATCCAATACAGAAAAA+TGG | - | chr6.4:29713813-29713832 | MS.gene93470:CDS | 20.0% |
| !! | CAAGCTATTAAAAACATTAT+TGG | - | chr6.4:29717079-29717098 | MS.gene93470:intron | 20.0% |
| !! | CTATTAAAAACATTATTGGA+AGG | - | chr6.4:29717083-29717102 | MS.gene93470:intron | 20.0% |
| !! | CTATTCTTATATGAAACTAT+GGG | + | chr6.4:29716012-29716031 | None:intergenic | 20.0% |
| !! | GAACTTAAAAGAAAAAATAG+TGG | + | chr6.4:29712669-29712688 | None:intergenic | 20.0% |
| !! | GATATAATATGAGAAGTAAA+TGG | - | chr6.4:29712622-29712641 | MS.gene93470:intron | 20.0% |
| !! | GTTTAGAAATATATGAAAAC+AGG | + | chr6.4:29717531-29717550 | None:intergenic | 20.0% |
| !! | TAATCAAATGAAAGCAAAAA+GGG | + | chr6.4:29712889-29712908 | None:intergenic | 20.0% |
| !! | TCTTATATATCATACATGAA+GGG | - | chr6.4:29713082-29713101 | MS.gene93470:intron | 20.0% |
| !! | TTACATAACATTGGATATAA+TGG | - | chr6.4:29713232-29713251 | MS.gene93470:intron | 20.0% |
| !! | TTATCTTGTTGAACTTAAAA+AGG | - | chr6.4:29712974-29712993 | MS.gene93470:intron | 20.0% |
| !! | TTCTTATATATCATACATGA+AGG | - | chr6.4:29713081-29713100 | MS.gene93470:intron | 20.0% |
| !!! | AAACTTAAGTTTTTGTTGTT+TGG | + | chr6.4:29712505-29712524 | None:intergenic | 20.0% |
| !!! | ATTAATTTTTTGGATTGGTT+AGG | - | chr6.4:29712241-29712260 | MS.gene93470:intron | 20.0% |
| !!! | GAAATAGTTGTTTTGTATTA+AGG | + | chr6.4:29716884-29716903 | None:intergenic | 20.0% |
| !!! | GTAATAATTTTAGAAAATGG+AGG | + | chr6.4:29714924-29714943 | None:intergenic | 20.0% |
| !!! | GTCAGACTTTATTTATTTTT+CGG | - | chr6.4:29712090-29712109 | MS.gene93470:intron | 20.0% |
| !!! | TAGAGATTAATTTTTTGGAT+TGG | - | chr6.4:29712236-29712255 | MS.gene93470:intron | 20.0% |
| !!! | TATTTTGTAGAAGAAATAAC+AGG | - | chr6.4:29716826-29716845 | MS.gene93470:intron | 20.0% |
| !!! | TCAAGATTTTTACATAACAT+TGG | - | chr6.4:29713223-29713242 | MS.gene93470:intron | 20.0% |
| !!! | TTCAATTCTTTTCAAATTTG+TGG | + | chr6.4:29714509-29714528 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTGCAATAAATTG+GGG | - | chr6.4:29712195-29712214 | MS.gene93470:intron | 20.0% |
| ! | AAAACAAGAAAAAAGCGAAT+TGG | + | chr6.4:29717333-29717352 | None:intergenic | 25.0% |
| ! | AAACTAGAATAAGAAGAAAC+AGG | + | chr6.4:29714616-29714635 | None:intergenic | 25.0% |
| ! | AAGAAAAAACAACATGTTCA+TGG | + | chr6.4:29712182-29712201 | None:intergenic | 25.0% |
| ! | AATACAGAAAAATGGCTAAT+AGG | - | chr6.4:29713821-29713840 | MS.gene93470:CDS | 25.0% |
| ! | AATAGACAGATTTGATTCTT+TGG | + | chr6.4:29715105-29715124 | None:intergenic | 25.0% |
| ! | AATTAACATGATTGTAATCC+AGG | - | chr6.4:29713308-29713327 | MS.gene93470:CDS | 25.0% |
| ! | ACAAAACAACTATTTCGAAA+TGG | - | chr6.4:29716888-29716907 | MS.gene93470:intron | 25.0% |
| ! | AGGTATTACATAAAATGGAA+AGG | + | chr6.4:29715363-29715382 | None:intergenic | 25.0% |
| ! | ATGACCTCAAATTGATAAAA+GGG | - | chr6.4:29712017-29712036 | MS.gene93470:intron | 25.0% |
| ! | CTAATCAAATGAAAGCAAAA+AGG | + | chr6.4:29712890-29712909 | None:intergenic | 25.0% |
| ! | CTACATAAAATTCAAAGGAA+AGG | + | chr6.4:29713178-29713197 | None:intergenic | 25.0% |
| ! | GGTATTACATAAAATGGAAA+GGG | + | chr6.4:29715362-29715381 | None:intergenic | 25.0% |
| ! | GTATTACATAAAATGGAAAG+GGG | + | chr6.4:29715361-29715380 | None:intergenic | 25.0% |
| ! | GTGAATTCTCAAATGTATTT+GGG | - | chr6.4:29715835-29715854 | MS.gene93470:CDS | 25.0% |
| ! | TACTGTTTGACTAGAATAAA+TGG | + | chr6.4:29712559-29712578 | None:intergenic | 25.0% |
| ! | TAGATATTCATATCTGTGAA+AGG | - | chr6.4:29712718-29712737 | MS.gene93470:intron | 25.0% |
| ! | TAGATTGTATCCATATGATT+TGG | - | chr6.4:29716133-29716152 | MS.gene93470:intron | 25.0% |
| ! | TATATCCTTTGTGTGAATAT+AGG | - | chr6.4:29715384-29715403 | MS.gene93470:CDS | 25.0% |
| ! | TATCTTAAATTAGAAGCTTC+TGG | - | chr6.4:29717257-29717276 | MS.gene93470:intron | 25.0% |
| ! | TATTATTATTATGGAGTACG+TGG | + | chr6.4:29714792-29714811 | None:intergenic | 25.0% |
| ! | TATTCACACAAAGGATATAT+AGG | + | chr6.4:29715383-29715402 | None:intergenic | 25.0% |
| ! | TGAATATAACTACATGTGTT+TGG | + | chr6.4:29714897-29714916 | None:intergenic | 25.0% |
| ! | TGTGAATTCTCAAATGTATT+TGG | - | chr6.4:29715834-29715853 | MS.gene93470:CDS | 25.0% |
| ! | TTACATTATGGTATGAAAGT+TGG | - | chr6.4:29713548-29713567 | MS.gene93470:intron | 25.0% |
| ! | TTATTCTAGTCAAACAGTAA+AGG | - | chr6.4:29712560-29712579 | MS.gene93470:CDS | 25.0% |
| ! | TTTAGAAGAAGGACAAAAAA+TGG | - | chr6.4:29713904-29713923 | MS.gene93470:CDS | 25.0% |
| ! | TTTCTAAACAAAATCATGTC+TGG | - | chr6.4:29717542-29717561 | MS.gene93470:intron | 25.0% |
| !! | TCTGAAAGAATACTTTTGAA+CGG | - | chr6.4:29716477-29716496 | MS.gene93470:intron | 25.0% |
| !! | TTTAACATTGCTGCATTTTA+AGG | - | chr6.4:29712345-29712364 | MS.gene93470:intron | 25.0% |
| !!! | AAGTTTCTGAAATTGCTATA+AGG | - | chr6.4:29717771-29717790 | MS.gene93470:CDS | 25.0% |
| !!! | AATTTTTCAGGTAAGAACAA+AGG | - | chr6.4:29715900-29715919 | MS.gene93470:CDS | 25.0% |
| !!! | AGACTTTATTTATTTTTCGG+CGG | - | chr6.4:29712093-29712112 | MS.gene93470:intron | 25.0% |
| !!! | ATAATTTGTGCAGCTTTATT+TGG | - | chr6.4:29716997-29717016 | MS.gene93470:intron | 25.0% |
| !!! | TAGTTGTTTTCAAAATGTTG+TGG | - | chr6.4:29712526-29712545 | MS.gene93470:CDS | 25.0% |
| !!! | TATTAGCCATTTTTCTGTAT+TGG | + | chr6.4:29713822-29713841 | None:intergenic | 25.0% |
| !!! | TATTTTGAAAACAGAAGACA+AGG | - | chr6.4:29717571-29717590 | MS.gene93470:intron | 25.0% |
| !!! | TGGTTTAATGCATTGTTTTT+TGG | - | chr6.4:29716583-29716602 | MS.gene93470:intron | 25.0% |
| AAACTTTCACATAGCACAAA+AGG | - | chr6.4:29715655-29715674 | MS.gene93470:CDS | 30.0% | |
| AAAGAGATTTCAGATCTTGA+GGG | - | chr6.4:29713653-29713672 | MS.gene93470:intron | 30.0% | |
| AAGCTCTCAATCTAAATTGT+CGG | + | chr6.4:29714854-29714873 | None:intergenic | 30.0% | |
| AGATTCCTCTCTCATATATT+AGG | - | chr6.4:29715069-29715088 | MS.gene93470:CDS | 30.0% | |
| AGCAATCGAAAACATAATCA+AGG | + | chr6.4:29713591-29713610 | None:intergenic | 30.0% | |
| AGTATTAAAACAAGGTAGTG+AGG | - | chr6.4:29716622-29716641 | MS.gene93470:CDS | 30.0% | |
| ATCAGATAAACAAAAACCTC+CGG | - | chr6.4:29715702-29715721 | MS.gene93470:CDS | 30.0% | |
| ATCTTTGTCAACGTTCTAAT+AGG | - | chr6.4:29713516-29713535 | MS.gene93470:intron | 30.0% | |
| ATGACTTAAGTTTGCAATCT+TGG | + | chr6.4:29713455-29713474 | None:intergenic | 30.0% | |
| ATTCATATTGCATTGTTTGC+AGG | - | chr6.4:29712932-29712951 | MS.gene93470:intron | 30.0% | |
| ATTGCATCAGATGTATTTGT+GGG | - | chr6.4:29716248-29716267 | MS.gene93470:intron | 30.0% | |
| ATTGCTATAAGGATGTTAAC+TGG | - | chr6.4:29717782-29717801 | MS.gene93470:CDS | 30.0% | |
| CAATGTATTAGACAGTGTTA+TGG | - | chr6.4:29712852-29712871 | MS.gene93470:intron | 30.0% | |
| CAATTCCTATATGATTGTTC+AGG | - | chr6.4:29716193-29716212 | MS.gene93470:intron | 30.0% | |
| CATGACCTCAAATTGATAAA+AGG | - | chr6.4:29712016-29712035 | MS.gene93470:intron | 30.0% | |
| CATTCTCTTAAACTAATCAC+AGG | - | chr6.4:29717644-29717663 | MS.gene93470:intron | 30.0% | |
| CTAAAATGTTTAAGCAACAC+AGG | + | chr6.4:29714463-29714482 | None:intergenic | 30.0% | |
| CTAACATGTGTCAGATAATA+AGG | - | chr6.4:29716165-29716184 | MS.gene93470:intron | 30.0% | |
| CTGCACATTATCATAAATAG+AGG | - | chr6.4:29715248-29715267 | MS.gene93470:CDS | 30.0% | |
| TACATTTGAGAATTCACAAG+TGG | + | chr6.4:29715832-29715851 | None:intergenic | 30.0% | |
| TACGTATATACATACCTGTT+GGG | + | chr6.4:29717142-29717161 | None:intergenic | 30.0% | |
| TATCAGACAATGTCTCAAAA+TGG | + | chr6.4:29713120-29713139 | None:intergenic | 30.0% | |
| TATCTAACATCTAGCAGATA+TGG | + | chr6.4:29712606-29712625 | None:intergenic | 30.0% | |
| TATTGCATCAGATGTATTTG+TGG | - | chr6.4:29716247-29716266 | MS.gene93470:intron | 30.0% | |
| TCAGTTGTAAACATAATCTC+TGG | - | chr6.4:29716660-29716679 | MS.gene93470:CDS | 30.0% | |
| TCATATGAACTAGCAGTATT+AGG | - | chr6.4:29715150-29715169 | MS.gene93470:CDS | 30.0% | |
| TGACATAGAAATTGAACACT+TGG | + | chr6.4:29715477-29715496 | None:intergenic | 30.0% | |
| TTAATAACGACGAAATTCTG+TGG | - | chr6.4:29716770-29716789 | MS.gene93470:intron | 30.0% | |
| TTACAGAAACAGTGATACTA+TGG | - | chr6.4:29716306-29716325 | MS.gene93470:intron | 30.0% | |
| TTATCATAAATAGAGGAGTG+TGG | - | chr6.4:29715255-29715274 | MS.gene93470:CDS | 30.0% | |
| TTCTCAAATGTATTTGGGTA+TGG | - | chr6.4:29715840-29715859 | MS.gene93470:CDS | 30.0% | |
| TTCTCGTATATGACAACAAT+AGG | + | chr6.4:29712453-29712472 | None:intergenic | 30.0% | |
| TTGCTATAAGGATGTTAACT+GGG | - | chr6.4:29717783-29717802 | MS.gene93470:CDS | 30.0% | |
| ! | ATTGTATCCATATGATTTGG+TGG | - | chr6.4:29716136-29716155 | MS.gene93470:intron | 30.0% |
| ! | ATTTAAGATAGCAATGTCTG+TGG | + | chr6.4:29717247-29717266 | None:intergenic | 30.0% |
| ! | CGTTAGCATTGAAAAATCTT+GGG | - | chr6.4:29714077-29714096 | MS.gene93470:CDS | 30.0% |
| ! | GATACTTATCAATGTCGATT+AGG | + | chr6.4:29717367-29717386 | None:intergenic | 30.0% |
| ! | GTTAGCATTGAAAAATCTTG+GGG | - | chr6.4:29714078-29714097 | MS.gene93470:CDS | 30.0% |
| ! | TAGACCCTTTTATCAATTTG+AGG | + | chr6.4:29712024-29712043 | None:intergenic | 30.0% |
| ! | TATGATAATGTGCAGAAACA+GGG | + | chr6.4:29715243-29715262 | None:intergenic | 30.0% |
| ! | TTATGATAATGTGCAGAAAC+AGG | + | chr6.4:29715244-29715263 | None:intergenic | 30.0% |
| ! | TTGTTCAGGAGCTTTTTATA+AGG | - | chr6.4:29716207-29716226 | MS.gene93470:intron | 30.0% |
| ! | TTTTTGTCTGTGTTCAGTAA+TGG | + | chr6.4:29713990-29714009 | None:intergenic | 30.0% |
| !! | AAGATTTTTCAATGCTAACG+CGG | + | chr6.4:29714077-29714096 | None:intergenic | 30.0% |
| !! | CTTTTATCAATTTGAGGTCA+TGG | + | chr6.4:29712018-29712037 | None:intergenic | 30.0% |
| !! | GTGAGTCTGATATTACTTTT+TGG | + | chr6.4:29716971-29716990 | None:intergenic | 30.0% |
| !! | TGAGAATACTTTTAGAAGTC+AGG | + | chr6.4:29716852-29716871 | None:intergenic | 30.0% |
| !! | TTTTAACTACCAATCCACAT+TGG | + | chr6.4:29717204-29717223 | None:intergenic | 30.0% |
| !!! | TGATATTACTTTTTGGTGAG+TGG | + | chr6.4:29716964-29716983 | None:intergenic | 30.0% |
| AAAATTCAAAGGAAAGGTCG+TGG | + | chr6.4:29713172-29713191 | None:intergenic | 35.0% | |
| AAACCACAAACGAATGACTA+TGG | + | chr6.4:29716569-29716588 | None:intergenic | 35.0% | |
| AAGCAGTATAAGACAACGAT+TGG | + | chr6.4:29717691-29717710 | None:intergenic | 35.0% | |
| AAGCTCCTATATTCACACAA+AGG | + | chr6.4:29715392-29715411 | None:intergenic | 35.0% | |
| AAGCTCCTGAACAATCATAT+AGG | + | chr6.4:29716201-29716220 | None:intergenic | 35.0% | |
| AAGGATGTTTCATGCTTTCT+TGG | - | chr6.4:29715919-29715938 | MS.gene93470:CDS | 35.0% | |
| AATAAGAAGAAACAGGAGGT+AGG | + | chr6.4:29714609-29714628 | None:intergenic | 35.0% | |
| ACACACCTAATATATGAGAG+AGG | + | chr6.4:29715077-29715096 | None:intergenic | 35.0% | |
| ACAGACACAAATATGAGACA+CGG | + | chr6.4:29714966-29714985 | None:intergenic | 35.0% | |
| ACCAGTTTAATTCTCAGGAA+TGG | + | chr6.4:29712769-29712788 | None:intergenic | 35.0% | |
| ACCTAAAGGAAAAAAGGCTT+TGG | + | chr6.4:29715014-29715033 | None:intergenic | 35.0% | |
| ACTTCCAATGCTTGATGAAA+CGG | + | chr6.4:29711817-29711836 | None:intergenic | 35.0% | |
| AGAAGACAAGGTACAAACAA+TGG | - | chr6.4:29717583-29717602 | MS.gene93470:intron | 35.0% | |
| AGGATGTTTCATGCTTTCTT+GGG | - | chr6.4:29715920-29715939 | MS.gene93470:CDS | 35.0% | |
| AGTCAAACAGTAAAGGTTGA+AGG | - | chr6.4:29712567-29712586 | MS.gene93470:CDS | 35.0% | |
| ATACATCTGAGCTAGTAACT+TGG | - | chr6.4:29714284-29714303 | MS.gene93470:intron | 35.0% | |
| ATCAGATGTATTTGTGGGAA+GGG | - | chr6.4:29716253-29716272 | MS.gene93470:intron | 35.0% | |
| ATGGCAAAAGAGATTACACA+AGG | - | chr6.4:29713923-29713942 | MS.gene93470:CDS | 35.0% | |
| ATTTAGATTGAGAGCTTGTC+CGG | - | chr6.4:29714857-29714876 | MS.gene93470:intron | 35.0% | |
| CAAAGAGATTTCAGATCTTG+AGG | - | chr6.4:29713652-29713671 | MS.gene93470:intron | 35.0% | |
| CAAATTCAACTCAATGGTTC+AGG | - | chr6.4:29714672-29714691 | MS.gene93470:intron | 35.0% | |
| CACAGTCATTCTTGTCTTAT+CGG | + | chr6.4:29717394-29717413 | None:intergenic | 35.0% | |
| CAGTTTAATTCTCAGGAATG+GGG | + | chr6.4:29712767-29712786 | None:intergenic | 35.0% | |
| CCAGTTTAATTCTCAGGAAT+GGG | + | chr6.4:29712768-29712787 | None:intergenic | 35.0% | |
| CCTAAAGGAAAAAAGGCTTT+GGG | + | chr6.4:29715013-29715032 | None:intergenic | 35.0% | |
| CTAATTACTCTGCCTTCATA+CGG | - | chr6.4:29713030-29713049 | MS.gene93470:intron | 35.0% | |
| CTACGTATATACATACCTGT+TGG | + | chr6.4:29717143-29717162 | None:intergenic | 35.0% | |
| CTAGAATAAGAAGAAACAGG+AGG | + | chr6.4:29714613-29714632 | None:intergenic | 35.0% | |
| CTCAGCTAATAGAACATCAA+GGG | + | chr6.4:29713858-29713877 | None:intergenic | 35.0% | |
| CTGTTAATAAATGCAATGCC+AGG | - | chr6.4:29715499-29715518 | MS.gene93470:CDS | 35.0% | |
| CTTAAGTTTGCAATCTTGGT+CGG | + | chr6.4:29713451-29713470 | None:intergenic | 35.0% | |
| CTTGAAATCCTACAATTGGA+TGG | - | chr6.4:29715430-29715449 | MS.gene93470:CDS | 35.0% | |
| GAAAAGAGTGGAAGAATCAA+TGG | - | chr6.4:29713877-29713896 | MS.gene93470:CDS | 35.0% | |
| GAGCTATAATCATGCATGTT+TGG | - | chr6.4:29717430-29717449 | MS.gene93470:intron | 35.0% | |
| GCAAAACCAGTTTAATTCTC+AGG | + | chr6.4:29712774-29712793 | None:intergenic | 35.0% | |
| GCGAAATGGTTGAAAAAACA+AGG | + | chr6.4:29714216-29714235 | None:intergenic | 35.0% | |
| GTGGTGACTAATCATATCTA+AGG | + | chr6.4:29716945-29716964 | None:intergenic | 35.0% | |
| GTTGGATAAAAGGTTTCTCA+TGG | + | chr6.4:29713690-29713709 | None:intergenic | 35.0% | |
| TACATCTGAGCTAGTAACTT+GGG | - | chr6.4:29714285-29714304 | MS.gene93470:intron | 35.0% | |
| TATACGAGAAGAGATTGTTG+CGG | - | chr6.4:29712463-29712482 | MS.gene93470:intron | 35.0% | |
| TATACGTAGCCAAAAATAGC+AGG | - | chr6.4:29717154-29717173 | MS.gene93470:intron | 35.0% | |
| TCAAATGTATTTGGGTATGG+AGG | - | chr6.4:29715843-29715862 | MS.gene93470:CDS | 35.0% | |
| TCAACGTTCTAATAGGACTA+AGG | - | chr6.4:29713523-29713542 | MS.gene93470:intron | 35.0% | |
| TCCAATTGTAGGATTTCAAG+TGG | + | chr6.4:29715430-29715449 | None:intergenic | 35.0% | |
| TCCACTTGAAATCCTACAAT+TGG | - | chr6.4:29715426-29715445 | MS.gene93470:CDS | 35.0% | |
| TCTATTAGCTGAGAAAAGAG+TGG | - | chr6.4:29713865-29713884 | MS.gene93470:CDS | 35.0% | |
| TCTCAGCTAATAGAACATCA+AGG | + | chr6.4:29713859-29713878 | None:intergenic | 35.0% | |
| TGCAATAAATTGGGGTATGT+TGG | - | chr6.4:29712203-29712222 | MS.gene93470:intron | 35.0% | |
| TGCTCACAAATTCAACTCAA+TGG | - | chr6.4:29714666-29714685 | MS.gene93470:intron | 35.0% | |
| TGTAGATGGCAAATTGATAG+CGG | - | chr6.4:29717177-29717196 | MS.gene93470:intron | 35.0% | |
| TTAAGTTTGCAATCTTGGTC+GGG | + | chr6.4:29713450-29713469 | None:intergenic | 35.0% | |
| TTCATCTACATTGTCGAAGA+CGG | + | chr6.4:29717813-29717832 | None:intergenic | 35.0% | |
| TTTCCATAGTCATTCGTTTG+TGG | - | chr6.4:29716563-29716582 | MS.gene93470:intron | 35.0% | |
| TTTCGCTTCTCCTTAAGAAA+CGG | - | chr6.4:29714329-29714348 | MS.gene93470:intron | 35.0% | |
| ! | AACCTTGTACGAACGATTTT+TGG | - | chr6.4:29712068-29712087 | MS.gene93470:intron | 35.0% |
| ! | ACACGAGACTTTAGAAACTA+AGG | + | chr6.4:29716424-29716443 | None:intergenic | 35.0% |
| ! | AGGACTAAGGTGTTACATTA+TGG | - | chr6.4:29713536-29713555 | MS.gene93470:intron | 35.0% |
| ! | CAAGTTAAGTTGCTGATAAG+CGG | - | chr6.4:29716716-29716735 | MS.gene93470:intron | 35.0% |
| ! | CTCAAGATCTGAAATCTCTT+TGG | + | chr6.4:29713654-29713673 | None:intergenic | 35.0% |
| ! | GATAAGCTTAGGGTTTTCAA+AGG | - | chr6.4:29711870-29711889 | MS.gene93470:CDS | 35.0% |
| ! | GATTCTTTGACAGTTTTTGC+TGG | - | chr6.4:29714247-29714266 | MS.gene93470:intron | 35.0% |
| ! | GCGTTAGCATTGAAAAATCT+TGG | - | chr6.4:29714076-29714095 | MS.gene93470:CDS | 35.0% |
| ! | GTGATGATATTTTCATCCCA+AGG | - | chr6.4:29717031-29717050 | MS.gene93470:intron | 35.0% |
| ! | TACACACTGTCATCTTTTAG+AGG | - | chr6.4:29714417-29714436 | MS.gene93470:intron | 35.0% |
| ! | TTTTATAAGGCTTACCGAAG+TGG | - | chr6.4:29716220-29716239 | MS.gene93470:intron | 35.0% |
| ! | TTTTCTTAGTGTTAACCCTC+CGG | + | chr6.4:29712154-29712173 | None:intergenic | 35.0% |
| !!! | AAAGCCTTTTTTCCTTTAGG+TGG | - | chr6.4:29715013-29715032 | MS.gene93470:CDS | 35.0% |
| !!! | AAGCCTTTTTTCCTTTAGGT+GGG | - | chr6.4:29715014-29715033 | MS.gene93470:CDS | 35.0% |
| !!! | GTAATCCAGGTTTTAACTAG+TGG | - | chr6.4:29713321-29713340 | MS.gene93470:CDS | 35.0% |
| !!! | TTTTTTCCTTTAGGTGGGAT+GGG | - | chr6.4:29715019-29715038 | MS.gene93470:CDS | 35.0% |
| ACACAACAGATAGCATTGCT+AGG | - | chr6.4:29715586-29715605 | MS.gene93470:CDS | 40.0% | |
| ACGAGATAAGTAACGACCTT+GGG | + | chr6.4:29717050-29717069 | None:intergenic | 40.0% | |
| ACTACCAGGAAAAGCAATAC+TGG | - | chr6.4:29714583-29714602 | MS.gene93470:intron | 40.0% | |
| ACTAGCTCAGATGTATATGC+AGG | + | chr6.4:29714280-29714299 | None:intergenic | 40.0% | |
| ACTGTGAGCTTCTACTTCTA+AGG | - | chr6.4:29717408-29717427 | MS.gene93470:intron | 40.0% | |
| AGTAACACTCTACCTGTTGA+AGG | + | chr6.4:29716391-29716410 | None:intergenic | 40.0% | |
| AGTAGTAATGTATGAGCTCG+AGG | + | chr6.4:29714109-29714128 | None:intergenic | 40.0% | |
| AGTGTATGCACTAACTGTTG+TGG | + | chr6.4:29714179-29714198 | None:intergenic | 40.0% | |
| ATCACGTAGCATGAATGAGA+AGG | - | chr6.4:29711929-29711948 | MS.gene93470:intron | 40.0% | |
| ATGCAGCTTGGTTGGATAAA+AGG | + | chr6.4:29713700-29713719 | None:intergenic | 40.0% | |
| ATGTATTTGTGGGAAGGGAA+AGG | - | chr6.4:29716258-29716277 | MS.gene93470:intron | 40.0% | |
| ATTTGGGTATGGAGGAGAAA+GGG | - | chr6.4:29715851-29715870 | MS.gene93470:CDS | 40.0% | |
| CACTCTCAGTGATAAGCTTA+GGG | - | chr6.4:29711860-29711879 | MS.gene93470:CDS | 40.0% | |
| CATCAGATGTATTTGTGGGA+AGG | - | chr6.4:29716252-29716271 | MS.gene93470:intron | 40.0% | |
| CATCCCACCTAAAGGAAAAA+AGG | + | chr6.4:29715020-29715039 | None:intergenic | 40.0% | |
| CATGACCACTAGTTAAAACC+TGG | + | chr6.4:29713329-29713348 | None:intergenic | 40.0% | |
| CCAAAAATAGCAGGTGTAGA+TGG | - | chr6.4:29717163-29717182 | MS.gene93470:intron | 40.0% | |
| CCCATTCCTGAGAATTAAAC+TGG | - | chr6.4:29712765-29712784 | MS.gene93470:intron | 40.0% | |
| CGCAAACAATTGTGAAACCA+TGG | + | chr6.4:29714750-29714769 | None:intergenic | 40.0% | |
| CTCATTCATGCTACGTGATT+TGG | + | chr6.4:29711928-29711947 | None:intergenic | 40.0% | |
| CTTACCTGAAAAATTCCCGA+AGG | + | chr6.4:29715895-29715914 | None:intergenic | 40.0% | |
| CTTATCACTGAGAGTGAGAT+TGG | + | chr6.4:29711856-29711875 | None:intergenic | 40.0% | |
| GAAACAGGGTTTCAAATTGC+AGG | + | chr6.4:29715229-29715248 | None:intergenic | 40.0% | |
| GAAACCATGGCAAAAAAGTG+AGG | + | chr6.4:29714737-29714756 | None:intergenic | 40.0% | |
| GAACTCATCTTCACAGTAGA+TGG | - | chr6.4:29715802-29715821 | MS.gene93470:CDS | 40.0% | |
| GACATTGAACGAACTCCTTT+AGG | - | chr6.4:29716356-29716375 | MS.gene93470:intron | 40.0% | |
| GACCAAAAATCGTTCGTACA+AGG | + | chr6.4:29712073-29712092 | None:intergenic | 40.0% | |
| GCATTGAAAAATCTTGGGGA+CGG | - | chr6.4:29714082-29714101 | MS.gene93470:CDS | 40.0% | |
| GGAGGGTTAACACTAAGAAA+AGG | - | chr6.4:29712153-29712172 | MS.gene93470:intron | 40.0% | |
| GTAAGTGCTTGCTCAACAAA+TGG | + | chr6.4:29714487-29714506 | None:intergenic | 40.0% | |
| TAGCAGTATTAGGCCTAATG+CGG | - | chr6.4:29715160-29715179 | MS.gene93470:CDS | 40.0% | |
| TATGTCCGAATCTTCGTTTC+CGG | + | chr6.4:29713768-29713787 | None:intergenic | 40.0% | |
| TATTATGGAGTACGTGGCAA+TGG | + | chr6.4:29714786-29714805 | None:intergenic | 40.0% | |
| TATTTGGGTATGGAGGAGAA+AGG | - | chr6.4:29715850-29715869 | MS.gene93470:CDS | 40.0% | |
| TCACTCTCAGTGATAAGCTT+AGG | - | chr6.4:29711859-29711878 | MS.gene93470:CDS | 40.0% | |
| TCGTTCAATGTCATCCCAAA+AGG | + | chr6.4:29716348-29716367 | None:intergenic | 40.0% | |
| TTGGAAGCAACATAGGCATT+CGG | + | chr6.4:29711909-29711928 | None:intergenic | 40.0% | |
| TTTATCCAACCAAGCTGCAT+TGG | - | chr6.4:29713700-29713719 | MS.gene93470:intron | 40.0% | |
| TTTGGTATCGTGTCAGATAC+CGG | + | chr6.4:29714879-29714898 | None:intergenic | 40.0% | |
| ! | ACGTGATTTGGAAGCAACAT+AGG | + | chr6.4:29711916-29711935 | None:intergenic | 40.0% |
| ! | ACTGAGAATCTAGAAAGCAC+AGG | - | chr6.4:29715532-29715551 | MS.gene93470:CDS | 40.0% |
| ! | ATCTGATGTTGCTTGCGAAA+TGG | + | chr6.4:29714230-29714249 | None:intergenic | 40.0% |
| ! | CTTTAGCTTCTGCTGATGAT+TGG | - | chr6.4:29714542-29714561 | MS.gene93470:intron | 40.0% |
| ! | GAAAGTTTGATAACAGCACG+CGG | + | chr6.4:29715643-29715662 | None:intergenic | 40.0% |
| ! | GTTTCCTTCGGGAATTTTTC+AGG | - | chr6.4:29715888-29715907 | MS.gene93470:CDS | 40.0% |
| ! | TGAAGTGCTCGAAACAAACT+TGG | + | chr6.4:29713962-29713981 | None:intergenic | 40.0% |
| ! | TGATGCAATAGTTGCCACTT+CGG | + | chr6.4:29716237-29716256 | None:intergenic | 40.0% |
| ! | TTGTGATGACCAAGCCTTTT+GGG | - | chr6.4:29716331-29716350 | MS.gene93470:intron | 40.0% |
| ! | TTTGTGATGACCAAGCCTTT+TGG | - | chr6.4:29716330-29716349 | MS.gene93470:intron | 40.0% |
| !! | AAATTGATAGCGGTCCAATG+TGG | - | chr6.4:29717187-29717206 | MS.gene93470:intron | 40.0% |
| !! | GTATTGCTTTTCCTGGTAGT+TGG | + | chr6.4:29714583-29714602 | None:intergenic | 40.0% |
| !! | TATCCATATGATTTGGTGGC+AGG | - | chr6.4:29716140-29716159 | MS.gene93470:intron | 40.0% |
| !! | TCAATGGCTGCTTTAGAAGA+AGG | - | chr6.4:29713893-29713912 | MS.gene93470:CDS | 40.0% |
| !! | TCTTTTAGAGGCTAGTGGAA+TGG | - | chr6.4:29714429-29714448 | MS.gene93470:intron | 40.0% |
| !! | TGAGCACTGATTGAAAGCTT+AGG | + | chr6.4:29714652-29714671 | None:intergenic | 40.0% |
| !! | TGTCATCTTTTAGAGGCTAG+TGG | - | chr6.4:29714424-29714443 | MS.gene93470:intron | 40.0% |
| !! | TTTATTTTTCGGCGGAACTC+TGG | - | chr6.4:29712101-29712120 | MS.gene93470:intron | 40.0% |
| !!! | CCATCTACACCTGCTATTTT+TGG | + | chr6.4:29717166-29717185 | None:intergenic | 40.0% |
| !!! | CCCAAAGCCTTTTTTCCTTT+AGG | - | chr6.4:29715010-29715029 | MS.gene93470:CDS | 40.0% |
| !!! | CTTTTTTCCTTTAGGTGGGA+TGG | - | chr6.4:29715018-29715037 | MS.gene93470:CDS | 40.0% |
| AAATCACTGTCTCAACCGTG+AGG | + | chr6.4:29717293-29717312 | None:intergenic | 45.0% | |
| AAGTTGCTGATAAGCGGACA+TGG | - | chr6.4:29716722-29716741 | MS.gene93470:intron | 45.0% | |
| ACCATGGCAAAAAAGTGAGG+AGG | + | chr6.4:29714734-29714753 | None:intergenic | 45.0% | |
| AGACCTGAATGGTTTCCTTC+GGG | - | chr6.4:29715877-29715896 | MS.gene93470:CDS | 45.0% | |
| AGGCGAGAATCCGTTTCTTA+AGG | + | chr6.4:29714342-29714361 | None:intergenic | 45.0% | |
| ATTCCCGAAGGAAACCATTC+AGG | + | chr6.4:29715883-29715902 | None:intergenic | 45.0% | |
| ATTGATGCTGTTGCTGCTAC+AGG | - | chr6.4:29717109-29717128 | MS.gene93470:intron | 45.0% | |
| CAATGTCATCCCAAAAGGCT+TGG | + | chr6.4:29716343-29716362 | None:intergenic | 45.0% | |
| CATGATCGGCCACAATACTA+TGG | + | chr6.4:29715198-29715217 | None:intergenic | 45.0% | |
| CGAAGATACTCACCGTATGA+AGG | + | chr6.4:29713045-29713064 | None:intergenic | 45.0% | |
| CGAGTTCACATGTACACGTT+CGG | + | chr6.4:29716522-29716541 | None:intergenic | 45.0% | |
| CGGACACAACCATAGTATTG+TGG | - | chr6.4:29715186-29715205 | MS.gene93470:CDS | 45.0% | |
| CGTAGCATGAATGAGAAGGT+CGG | - | chr6.4:29711933-29711952 | MS.gene93470:intron | 45.0% | |
| CGTTCGTACAAGGTTCATTG+AGG | + | chr6.4:29712063-29712082 | None:intergenic | 45.0% | |
| CTTGATGAAACGGATCCTCT+TGG | + | chr6.4:29711807-29711826 | None:intergenic | 45.0% | |
| GAAGATGCTTATAGTCCCAC+CGG | - | chr6.4:29717830-29717849 | MS.gene93470:CDS | 45.0% | |
| GACGAGATAAGTAACGACCT+TGG | + | chr6.4:29717051-29717070 | None:intergenic | 45.0% | |
| GAGACCTGAATGGTTTCCTT+CGG | - | chr6.4:29715876-29715895 | MS.gene93470:CDS | 45.0% | |
| GGATCCGTTTCATCAAGCAT+TGG | - | chr6.4:29711810-29711829 | MS.gene93470:CDS | 45.0% | |
| GTGCAAGTCCATCCAATTGT+AGG | + | chr6.4:29715441-29715460 | None:intergenic | 45.0% | |
| TACATGTGAACTCGTGTCAC+AGG | - | chr6.4:29716528-29716547 | MS.gene93470:intron | 45.0% | |
| TATTAGGCCTAATGCGGTTG+CGG | - | chr6.4:29715166-29715185 | MS.gene93470:CDS | 45.0% | |
| TCAAAGGAAAGGTCGTGGAA+CGG | + | chr6.4:29713167-29713186 | None:intergenic | 45.0% | |
| TCAACAAACCACTCATCCTC+TGG | + | chr6.4:29717752-29717771 | None:intergenic | 45.0% | |
| TGAATACAGTGTCTTGCCAG+AGG | - | chr6.4:29717733-29717752 | MS.gene93470:CDS | 45.0% | |
| TGGTCCATGGTTTAGCAGAA+GGG | - | chr6.4:29713720-29713739 | MS.gene93470:intron | 45.0% | |
| TGTGTCAGTTGAGATTGCAC+TGG | - | chr6.4:29713396-29713415 | MS.gene93470:CDS | 45.0% | |
| TTACCATTCGTGACTCCAAG+AGG | - | chr6.4:29711789-29711808 | MS.gene93470:CDS | 45.0% | |
| TTGATGCTGTTGCTGCTACA+GGG | - | chr6.4:29717110-29717129 | MS.gene93470:intron | 45.0% | |
| TTGCTTATGCACCAACTACC+AGG | - | chr6.4:29714569-29714588 | MS.gene93470:intron | 45.0% | |
| TTGGTCCATGGTTTAGCAGA+AGG | - | chr6.4:29713719-29713738 | MS.gene93470:intron | 45.0% | |
| TTTGGGTATGGAGGAGAAAG+GGG | - | chr6.4:29715852-29715871 | MS.gene93470:CDS | 45.0% | |
| ! | CACTGATTGAAAGCTTAGGC+TGG | + | chr6.4:29714648-29714667 | None:intergenic | 45.0% |
| ! | GAAGGTCGGTTTCAATCTCT+TGG | - | chr6.4:29711947-29711966 | MS.gene93470:intron | 45.0% |
| ! | TTGGATGGACTTGCACTAGA+AGG | - | chr6.4:29715445-29715464 | MS.gene93470:CDS | 45.0% |
| !! | ATATGAGACACGGTACTGAC+AGG | + | chr6.4:29714956-29714975 | None:intergenic | 45.0% |
| !! | CGGTACTGACAGGTAAACAT+TGG | + | chr6.4:29714946-29714965 | None:intergenic | 45.0% |
| !! | TAGGCCAGTATTGCTTTTCC+TGG | + | chr6.4:29714590-29714609 | None:intergenic | 45.0% |
| !! | TTAGCAGAAGGGTGTCAACT+TGG | - | chr6.4:29713731-29713750 | MS.gene93470:intron | 45.0% |
| !!! | TCCTCCTCACTTTTTTGCCA+TGG | - | chr6.4:29714730-29714749 | MS.gene93470:intron | 45.0% |
| AACCATGGACCAATGCAGCT+TGG | + | chr6.4:29713712-29713731 | None:intergenic | 50.0% | |
| AAGACCTCCTGATGCAGCTA+TGG | + | chr6.4:29714365-29714384 | None:intergenic | 50.0% | |
| AGAAAGGGGAGAGACCTGAA+TGG | - | chr6.4:29715866-29715885 | MS.gene93470:CDS | 50.0% | |
| ATCTTCGTTTCCGGTCACCA+AGG | + | chr6.4:29713759-29713778 | None:intergenic | 50.0% | |
| ATGGACCAATGCAGCTTGGT+TGG | + | chr6.4:29713708-29713727 | None:intergenic | 50.0% | |
| ATGTGAACTCGTGTCACAGG+TGG | - | chr6.4:29716531-29716550 | MS.gene93470:intron | 50.0% | |
| CGAACTCCTTTAGGTCCTCT+TGG | - | chr6.4:29716365-29716384 | MS.gene93470:intron | 50.0% | |
| GACACCCTTCTGCTAAACCA+TGG | + | chr6.4:29713727-29713746 | None:intergenic | 50.0% | |
| GATCCTCTTGGAGTCACGAA+TGG | + | chr6.4:29711795-29711814 | None:intergenic | 50.0% | |
| GCAATCTTGGTCGGGAAATC+AGG | + | chr6.4:29713442-29713461 | None:intergenic | 50.0% | |
| GCGTCAGTGATTCATGTAGC+AGG | + | chr6.4:29715046-29715065 | None:intergenic | 50.0% | |
| GGCGGAACTCTGGATTACTA+GGG | - | chr6.4:29712111-29712130 | MS.gene93470:intron | 50.0% | |
| GGTGACCGGAAACGAAGATT+CGG | - | chr6.4:29713760-29713779 | MS.gene93470:CDS | 50.0% | |
| GTGCCTGCCACCAAATCATA+TGG | + | chr6.4:29716146-29716165 | None:intergenic | 50.0% | |
| TACTAGGGTTCCTTTCTCCC+AGG | - | chr6.4:29712126-29712145 | MS.gene93470:intron | 50.0% | |
| TCTACCTGTTGAAGGCCAAG+AGG | + | chr6.4:29716383-29716402 | None:intergenic | 50.0% | |
| TCTCAACCGTGAGGATGAGA+AGG | + | chr6.4:29717284-29717303 | None:intergenic | 50.0% | |
| TCTGGTCCTTCTCATCCTCA+CGG | - | chr6.4:29717275-29717294 | MS.gene93470:intron | 50.0% | |
| TGAAGGCCAAGAGGACCTAA+AGG | + | chr6.4:29716374-29716393 | None:intergenic | 50.0% | |
| TGCAGGCTGCATCACATGAT+CGG | + | chr6.4:29715212-29715231 | None:intergenic | 50.0% | |
| TTCTCAGTGACAGCTGAACC+TGG | + | chr6.4:29715520-29715539 | None:intergenic | 50.0% | |
| TTCTTCAGTTCACGCTGCTC+CGG | + | chr6.4:29715724-29715743 | None:intergenic | 50.0% | |
| ! | AACCAAGCTGCATTGGTCCA+TGG | - | chr6.4:29713707-29713726 | MS.gene93470:intron | 50.0% |
| ! | AGGGTGTCAACTTGGTTCCT+TGG | - | chr6.4:29713739-29713758 | MS.gene93470:CDS | 50.0% |
| ! | CAACTTGGTTCCTTGGTGAC+CGG | - | chr6.4:29713746-29713765 | MS.gene93470:CDS | 50.0% |
| ! | GATAGCGGTCCAATGTGGAT+TGG | - | chr6.4:29717192-29717211 | MS.gene93470:intron | 50.0% |
| ! | TAGGAGCTTTTCGAAGACGC+AGG | - | chr6.4:29715403-29715422 | MS.gene93470:CDS | 50.0% |
| !! | CACGATAACGGCACTGACAA+TGG | - | chr6.4:29716085-29716104 | MS.gene93470:intron | 50.0% |
| ACCTCCTGATGCAGCTATGG+AGG | + | chr6.4:29714362-29714381 | None:intergenic | 55.0% | |
| AGTGTTAACCCTCCGGTTCC+TGG | + | chr6.4:29712147-29712166 | None:intergenic | 55.0% | |
| CGGCGGAACTCTGGATTACT+AGG | - | chr6.4:29712110-29712129 | MS.gene93470:intron | 55.0% | |
| CGGTTGATCGAATCTCTGCG+CGG | + | chr6.4:29714057-29714076 | None:intergenic | 55.0% | |
| CTACAGGGCTAGATCCCAAC+AGG | - | chr6.4:29717125-29717144 | MS.gene93470:intron | 55.0% | |
| GGTTCCTTTCTCCCAGGAAC+CGG | - | chr6.4:29712132-29712151 | MS.gene93470:intron | 55.0% | |
| GTGTCTTGCCAGAGGATGAG+TGG | - | chr6.4:29717741-29717760 | MS.gene93470:CDS | 55.0% | |
| GTGTTAACCCTCCGGTTCCT+GGG | + | chr6.4:29712146-29712165 | None:intergenic | 55.0% | |
| GTTGTGTCCGCAACCGCATT+AGG | + | chr6.4:29715176-29715195 | None:intergenic | 55.0% | |
| TCAGACGATCAACTTCGCGC+TGG | + | chr6.4:29715753-29715772 | None:intergenic | 55.0% | |
| ! | AGGTCCTCTTGGCCTTCAAC+AGG | - | chr6.4:29716376-29716395 | MS.gene93470:intron | 55.0% |
| ATCTCTGCGCGGCGTGTTGA+TGG | + | chr6.4:29714046-29714065 | None:intergenic | 60.0% | |
| CCTTTCTCCCAGGAACCGGA+GGG | - | chr6.4:29712136-29712155 | MS.gene93470:intron | 60.0% | |
| CTCGCCTCCATAGCTGCATC+AGG | - | chr6.4:29714355-29714374 | MS.gene93470:intron | 60.0% | |
| GCAGGTCCCATCCCACCTAA+AGG | + | chr6.4:29715028-29715047 | None:intergenic | 60.0% | |
| GCCTCCATAGCTGCATCAGG+AGG | - | chr6.4:29714358-29714377 | MS.gene93470:intron | 60.0% | |
| TCCTTTCTCCCAGGAACCGG+AGG | - | chr6.4:29712135-29712154 | MS.gene93470:intron | 60.0% | |
| TTCAGTTCACGCTGCTCCGG+AGG | + | chr6.4:29715721-29715740 | None:intergenic | 60.0% | |
| ! | TATGCGTGGGCTGATCCGGT+GGG | + | chr6.4:29717848-29717867 | None:intergenic | 60.0% |
| ! | TTATGCGTGGGCTGATCCGG+TGG | + | chr6.4:29717849-29717868 | None:intergenic | 60.0% |
| CCCTCCGGTTCCTGGGAGAA+AGG | + | chr6.4:29712139-29712158 | None:intergenic | 65.0% | |
| !! | CTGCGCGGCGTGTTGATGGT+TGG | + | chr6.4:29714042-29714061 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 29711774 | 29717868 | 29711774 | ID=MS.gene93470 |
| chr6.4 | mRNA | 29711774 | 29717868 | 29711774 | ID=MS.gene93470.t1;Parent=MS.gene93470 |
| chr6.4 | exon | 29717692 | 29717868 | 29717692 | ID=MS.gene93470.t1.exon1;Parent=MS.gene93470.t1 |
| chr6.4 | CDS | 29717692 | 29717868 | 29717692 | ID=cds.MS.gene93470.t1;Parent=MS.gene93470.t1 |
| chr6.4 | exon | 29716591 | 29716688 | 29716591 | ID=MS.gene93470.t1.exon2;Parent=MS.gene93470.t1 |
| chr6.4 | CDS | 29716591 | 29716688 | 29716591 | ID=cds.MS.gene93470.t1;Parent=MS.gene93470.t1 |
| chr6.4 | exon | 29714949 | 29715996 | 29714949 | ID=MS.gene93470.t1.exon3;Parent=MS.gene93470.t1 |
| chr6.4 | CDS | 29714949 | 29715996 | 29714949 | ID=cds.MS.gene93470.t1;Parent=MS.gene93470.t1 |
| chr6.4 | exon | 29713733 | 29714236 | 29713733 | ID=MS.gene93470.t1.exon4;Parent=MS.gene93470.t1 |
| chr6.4 | CDS | 29713733 | 29714236 | 29713733 | ID=cds.MS.gene93470.t1;Parent=MS.gene93470.t1 |
| chr6.4 | exon | 29713245 | 29713427 | 29713245 | ID=MS.gene93470.t1.exon5;Parent=MS.gene93470.t1 |
| chr6.4 | CDS | 29713245 | 29713427 | 29713245 | ID=cds.MS.gene93470.t1;Parent=MS.gene93470.t1 |
| chr6.4 | exon | 29712496 | 29712632 | 29712496 | ID=MS.gene93470.t1.exon6;Parent=MS.gene93470.t1 |
| chr6.4 | CDS | 29712496 | 29712632 | 29712496 | ID=cds.MS.gene93470.t1;Parent=MS.gene93470.t1 |
| chr6.4 | exon | 29711774 | 29711900 | 29711774 | ID=MS.gene93470.t1.exon7;Parent=MS.gene93470.t1 |
| chr6.4 | CDS | 29711774 | 29711900 | 29711774 | ID=cds.MS.gene93470.t1;Parent=MS.gene93470.t1 |
| Gene Sequence |
| Protein sequence |
