AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94061

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94061.t1 MTR_8g044070 93.041 388 18 4 16 398 14 397 0.0 742
MS.gene94061.t1 MTR_8g044040 71.744 407 92 11 1 404 1 387 0.0 514
MS.gene94061.t1 MTR_4g130270 69.036 197 60 1 33 229 24 219 8.53e-98 296
MS.gene94061.t1 MTR_7g009410 62.555 227 68 3 48 274 56 265 1.29e-91 282
MS.gene94061.t1 MTR_7g009410 40.206 97 50 2 36 132 143 231 1.32e-11 66.2
MS.gene94061.t1 MTR_2g460730 65.865 208 64 2 56 263 46 246 1.30e-87 271
MS.gene94061.t1 MTR_4g007770 59.592 245 68 5 52 268 31 272 2.06e-86 266
MS.gene94061.t1 MTR_6g011490 61.395 215 76 2 19 229 19 230 1.35e-84 263
MS.gene94061.t1 MTR_8g468920 70.681 191 52 2 56 246 68 254 3.67e-82 258
MS.gene94061.t1 MTR_8g468920 40.426 94 48 2 39 132 150 235 1.01e-11 66.6
MS.gene94061.t1 MTR_5g015070 67.582 182 57 1 43 224 237 416 3.78e-82 262
MS.gene94061.t1 MTR_4g127930 68.639 169 53 0 56 224 158 326 6.01e-81 258
MS.gene94061.t1 MTR_4g127930 43.023 86 41 1 156 233 156 241 1.72e-12 69.3
MS.gene94061.t1 MTR_7g080460 68.182 176 56 0 56 231 258 433 1.34e-79 259
MS.gene94061.t1 MTR_4g065370 64.607 178 63 0 56 233 162 339 1.48e-79 255
MS.gene94061.t1 MTR_2g098180 65.909 176 60 0 56 231 166 341 6.54e-79 253
MS.gene94061.t1 MTR_2g098180 41.667 108 47 3 150 249 158 257 5.44e-13 70.9
MS.gene94061.t1 MTR_8g068510 65.169 178 59 1 47 224 121 295 9.78e-77 244
MS.gene94061.t1 MTR_8g020510 54.839 217 91 2 56 268 247 460 5.30e-74 242
MS.gene94061.t1 MTR_3g103460 56.332 229 85 5 1 224 256 474 2.55e-73 242
MS.gene94061.t1 MTR_3g103460 38.000 100 51 3 35 133 388 477 2.63e-11 65.9
MS.gene94061.t1 MTR_1g017400 65.680 169 55 1 56 224 311 476 3.91e-73 241
MS.gene94061.t1 MTR_4g097520 54.386 228 92 5 8 233 267 484 1.54e-72 240
MS.gene94061.t1 MTR_5g031880 67.456 169 52 1 56 224 223 388 1.04e-66 221
MS.gene94061.t1 MTR_7g091390 54.054 185 75 4 4 188 6 180 2.45e-48 170
MS.gene94061.t1 MTR_7g100590 48.718 195 81 4 61 247 140 323 5.28e-45 162
MS.gene94061.t1 MTR_5g016810 54.386 171 67 2 61 231 153 312 1.53e-44 162
MS.gene94061.t1 MTR_4g094868 54.762 168 65 2 61 228 177 333 3.36e-44 161
MS.gene94061.t1 MTR_4g094868 54.762 168 65 2 61 228 177 333 3.82e-44 161
MS.gene94061.t1 MTR_2g093060 50.785 191 83 2 39 229 113 292 1.11e-43 159
MS.gene94061.t1 MTR_2g093060 50.785 191 83 2 39 229 113 292 1.25e-43 159
MS.gene94061.t1 MTR_4g061200 43.668 229 99 4 61 289 132 330 4.88e-43 155
MS.gene94061.t1 MTR_4g061200 41.071 112 45 3 36 135 187 289 3.28e-11 65.1
MS.gene94061.t1 MTR_4g061200 46.939 196 93 2 61 256 132 316 3.55e-42 155
MS.gene94061.t1 MTR_4g061200 41.071 112 45 3 36 135 187 289 6.14e-11 64.3
MS.gene94061.t1 MTR_5g016810 51.977 177 68 3 61 231 153 318 8.22e-42 154
MS.gene94061.t1 MTR_4g094868 57.246 138 58 1 91 228 41 177 4.68e-37 139
MS.gene94061.t1 MTR_2g093060 47.120 191 75 3 39 229 113 277 1.86e-34 133
MS.gene94061.t1 MTR_4g061200 43.367 196 85 3 61 256 132 301 1.07e-33 130
MS.gene94061.t1 MTR_7g061190 47.368 152 79 1 92 243 3 153 3.81e-33 122
MS.gene94061.t1 MTR_4g061200 43.367 196 85 3 61 256 132 301 5.69e-33 129
MS.gene94061.t1 MTR_7g091390 61.053 95 32 1 94 188 3 92 5.56e-24 102
MS.gene94061.t1 MTR_3g090510 47.222 108 56 1 98 205 163 269 4.47e-18 85.9
MS.gene94061.t1 MTR_1g049140 39.869 153 73 4 35 179 104 245 4.99e-16 77.8
MS.gene94061.t1 MTR_1g049140 40.397 151 71 4 37 179 106 245 8.24e-16 79.0
MS.gene94061.t1 MTR_7g060560 45.370 108 57 2 98 205 156 261 1.18e-15 78.6
MS.gene94061.t1 MTR_1g049140 39.869 153 73 4 35 179 104 245 1.29e-15 78.2
MS.gene94061.t1 MTR_2g015050 37.391 115 60 3 21 131 90 196 1.57e-12 67.8
MS.gene94061.t1 MTR_1g090290 33.333 126 60 4 16 128 58 172 1.77e-12 66.2
MS.gene94061.t1 MTR_1g048610 36.893 103 48 4 33 135 70 155 5.97e-11 62.4
MS.gene94061.t1 MTR_5g075570 40.777 103 54 3 146 244 103 202 7.18e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94061.t1 AT3G54320 58.025 324 110 8 53 354 58 377 4.95e-102 310
MS.gene94061.t1 AT3G54320 58.385 322 108 8 55 354 60 377 5.03e-102 310
MS.gene94061.t1 AT5G57390 59.535 215 73 1 10 224 49 249 1.29e-83 263
MS.gene94061.t1 AT5G57390 38.835 103 47 2 156 250 79 173 9.58e-12 67.0
MS.gene94061.t1 AT1G79700 64.602 226 71 3 45 263 37 260 6.34e-83 257
MS.gene94061.t1 AT5G57390 59.535 215 73 1 10 224 167 367 1.12e-82 264
MS.gene94061.t1 AT5G57390 41.860 86 42 1 156 233 197 282 8.04e-12 67.4
MS.gene94061.t1 AT1G16060 71.429 189 53 1 45 233 43 230 2.00e-80 251
MS.gene94061.t1 AT1G51190 66.292 178 60 0 56 233 186 363 1.17e-79 256
MS.gene94061.t1 AT5G17430 67.045 176 58 0 56 231 144 319 4.71e-79 253
MS.gene94061.t1 AT5G17430 40.196 102 45 3 156 249 142 235 4.83e-11 65.1
MS.gene94061.t1 AT4G37750 52.033 246 115 2 14 258 239 482 7.69e-79 254
MS.gene94061.t1 AT5G17430 67.045 176 58 0 56 231 206 381 1.09e-78 254
MS.gene94061.t1 AT5G17430 40.196 102 45 3 156 249 204 297 4.59e-11 65.1
MS.gene94061.t1 AT1G72570 57.674 215 82 3 12 224 180 387 1.61e-78 249
MS.gene94061.t1 AT3G20840 65.341 176 61 0 56 231 177 352 3.83e-78 253
MS.gene94061.t1 AT3G20840 38.889 108 50 3 150 249 169 268 1.23e-11 67.0
MS.gene94061.t1 AT3G20840 42.857 84 38 2 48 130 271 345 5.09e-11 65.1
MS.gene94061.t1 AT5G65510 61.809 199 76 0 26 224 139 337 1.03e-74 240
MS.gene94061.t1 AT5G65510 61.809 199 76 0 26 224 197 395 1.76e-74 241
MS.gene94061.t1 AT5G65510 61.809 199 76 0 26 224 197 395 1.76e-74 241
MS.gene94061.t1 AT1G79700 60.177 226 71 4 45 263 37 250 1.60e-72 230
MS.gene94061.t1 AT3G54320 53.287 289 97 9 94 354 33 311 9.44e-71 227
MS.gene94061.t1 AT3G54320 53.287 289 97 9 94 354 33 311 9.44e-71 227
MS.gene94061.t1 AT5G10510 61.307 199 76 1 26 224 197 394 6.71e-70 230
MS.gene94061.t1 AT5G10510 36.893 103 49 2 156 250 224 318 1.71e-11 66.2
MS.gene94061.t1 AT5G10510 61.307 199 76 1 26 224 197 394 6.71e-70 230
MS.gene94061.t1 AT5G10510 36.893 103 49 2 156 250 224 318 1.71e-11 66.2
MS.gene94061.t1 AT5G10510 61.307 199 76 1 26 224 235 432 1.05e-69 231
MS.gene94061.t1 AT5G10510 36.893 103 49 2 156 250 262 356 1.28e-11 67.0
MS.gene94061.t1 AT5G10510 61.307 199 76 1 26 224 235 432 1.05e-69 231
MS.gene94061.t1 AT5G10510 36.893 103 49 2 156 250 262 356 1.28e-11 67.0
MS.gene94061.t1 AT5G10510 61.307 199 76 1 26 224 220 417 1.08e-69 230
MS.gene94061.t1 AT5G10510 36.893 103 49 2 156 250 247 341 1.53e-11 66.6
MS.gene94061.t1 AT5G65510 60.119 168 67 0 26 193 139 306 8.28e-68 218
MS.gene94061.t1 AT5G65510 44.186 86 39 2 161 238 172 256 7.46e-12 66.2
MS.gene94061.t1 AT5G10510 59.799 199 76 2 26 224 197 391 2.02e-65 218
MS.gene94061.t1 AT5G10510 54.338 219 79 2 26 224 235 452 1.37e-62 212
MS.gene94061.t1 AT1G79700 63.842 177 55 3 94 263 10 184 6.55e-57 187
MS.gene94061.t1 AT1G79700 62.857 175 56 3 96 263 6 178 8.26e-55 181
MS.gene94061.t1 AT1G16060 69.935 153 45 1 81 233 9 160 8.61e-55 183
MS.gene94061.t1 AT2G41710 43.083 253 134 3 23 275 34 276 6.60e-51 177
MS.gene94061.t1 AT2G41710 43.083 253 134 3 23 275 34 276 7.50e-51 178
MS.gene94061.t1 AT2G41710 42.248 258 134 4 23 275 34 281 1.49e-48 171
MS.gene94061.t1 AT4G36920 53.801 171 68 2 61 231 132 291 5.89e-45 161
MS.gene94061.t1 AT4G36920 53.801 171 68 2 61 231 132 291 5.89e-45 161
MS.gene94061.t1 AT5G67180 48.980 196 85 3 61 256 97 277 1.16e-44 157
MS.gene94061.t1 AT5G67180 43.617 94 44 3 40 133 168 252 7.86e-11 63.2
MS.gene94061.t1 AT3G54320 48.374 246 89 9 137 354 1 236 2.75e-44 156
MS.gene94061.t1 AT2G41710 37.415 294 139 4 23 281 34 317 3.05e-44 160
MS.gene94061.t1 AT2G28550 51.724 174 73 2 61 234 154 316 3.81e-44 160
MS.gene94061.t1 AT5G67180 54.268 164 64 2 61 224 97 249 4.68e-44 155
MS.gene94061.t1 AT5G67180 43.617 94 44 3 40 133 168 252 8.41e-11 62.8
MS.gene94061.t1 AT5G67180 48.980 196 85 3 61 256 97 277 5.35e-44 157
MS.gene94061.t1 AT1G16060 78.351 97 20 1 137 233 1 96 2.01e-40 143
MS.gene94061.t1 AT1G16060 78.351 97 20 1 137 233 1 96 2.01e-40 143
MS.gene94061.t1 AT1G16060 78.351 97 20 1 137 233 1 96 2.01e-40 143
MS.gene94061.t1 AT1G16060 78.351 97 20 1 137 233 1 96 2.01e-40 143
MS.gene94061.t1 AT2G28550 52.857 140 55 2 61 200 154 282 3.79e-35 133
MS.gene94061.t1 AT2G28550 47.701 174 65 3 61 234 154 301 5.06e-35 135
MS.gene94061.t1 AT5G67180 52.857 140 55 2 61 200 97 225 1.59e-34 129
MS.gene94061.t1 AT2G28550 53.175 126 48 2 61 186 154 268 2.73e-29 115
MS.gene94061.t1 AT2G28550 53.175 126 48 2 61 186 154 268 2.73e-29 115
MS.gene94061.t1 AT2G39250 46.400 125 57 1 40 164 88 202 1.32e-25 104
MS.gene94061.t1 AT2G39250 46.400 125 57 1 40 164 88 202 3.21e-25 105
MS.gene94061.t1 AT2G28550 46.099 141 60 2 94 234 11 135 3.41e-25 104
MS.gene94061.t1 AT5G60120 47.826 138 61 2 48 185 148 274 5.91e-24 103
MS.gene94061.t1 AT5G60120 47.826 138 61 2 48 185 148 274 5.91e-24 103
MS.gene94061.t1 AT5G60120 47.826 138 61 2 48 185 148 274 5.91e-24 103
MS.gene94061.t1 AT5G60120 47.826 138 61 2 48 185 148 274 7.45e-24 103
MS.gene94061.t1 AT5G60120 47.826 138 61 2 48 185 148 274 8.29e-24 103
MS.gene94061.t1 AT5G60120 47.826 138 61 2 48 185 148 274 1.01e-23 103
MS.gene94061.t1 AT1G16060 72.973 74 19 1 160 233 2 74 2.11e-23 97.1
MS.gene94061.t1 AT3G54990 48.598 107 45 1 61 167 123 219 1.54e-20 90.5
MS.gene94061.t1 AT3G54990 48.598 107 45 1 61 167 123 219 7.37e-20 90.5
MS.gene94061.t1 AT1G03800 37.500 104 49 4 34 130 19 113 5.08e-12 65.9
MS.gene94061.t1 AT4G27950 39.423 104 55 4 162 264 117 213 3.73e-11 64.7
MS.gene94061.t1 AT5G51190 41.304 92 44 3 61 152 72 153 7.51e-11 62.0

Find 83 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGGATGGTTTAGTTTATT+TGG 0.144802 8.4:+56351541 MS.gene94061:intron
TGGTAACAAATACCTCTATT+TGG 0.186609 8.4:+56353186 MS.gene94061:CDS
CCTTGTAACTCCTCTGTAAA+TGG 0.235394 8.4:-56350819 None:intergenic
TCCAATGCTTCTTCGGAATC+AGG 0.245762 8.4:-56355485 None:intergenic
TCATCATCTTCATCTTCTAT+TGG 0.261290 8.4:+56350671 MS.gene94061:CDS
GAAGATTTGAAGCTCATCTA+TGG 0.274505 8.4:+56350984 MS.gene94061:CDS
CCATGGAGCTTCATGTATAA+TGG 0.274823 8.4:+56355653 MS.gene94061:CDS
AAATCAAGATGCCGAAAATA+TGG 0.299269 8.4:+56355871 MS.gene94061:CDS
ATGCGCAATAGTTAATATTA+TGG 0.304733 8.4:+56355607 MS.gene94061:CDS
TATCAATATCGGTGAAGTTT+TGG 0.306250 8.4:+56355832 MS.gene94061:CDS
TTCTACTGCCACCATTTGTT+TGG 0.309446 8.4:-56350790 None:intergenic
ATCTATGGGATAAGACTTCT+TGG 0.321379 8.4:+56350999 MS.gene94061:CDS
TGCAAAAGAGTTTGAGGAAA+TGG 0.326215 8.4:+56352462 MS.gene94061:CDS
GTAGTTGCTTATATCAAAAT+TGG 0.328027 8.4:-56355381 None:intergenic
GCGGATGGTTTAGTTTATTT+GGG 0.340077 8.4:+56351542 MS.gene94061:intron
TTGATCAAATTAGACATAGA+TGG 0.349087 8.4:+56350957 MS.gene94061:intron
TCTTGCAGCACTCAAGTATT+GGG 0.356416 8.4:+56351745 MS.gene94061:CDS
TTGTTCTTCCAATGCTTCTT+CGG 0.362093 8.4:-56355492 None:intergenic
GAGCTTCCCACCGACCATTA+TGG 0.381198 8.4:-56353147 None:intergenic
GATTTAATGAATATATTTGA+TGG 0.394335 8.4:+56355728 MS.gene94061:CDS
TTGAATAGGCATCACCATAA+TGG 0.407675 8.4:+56353133 MS.gene94061:intron
GGTAACAAATACCTCTATTT+GGG 0.408649 8.4:+56353187 MS.gene94061:CDS
CTAAATACCGTGGGGTTGCC+AGG 0.413317 8.4:+56352554 MS.gene94061:CDS
GGCAGCAGTGGCTTATGATA+TGG 0.413991 8.4:+56355325 MS.gene94061:CDS
CTTGAGTGCTGCAAGATCAT+AGG 0.421646 8.4:-56351738 None:intergenic
ATCTTGCAGCACTCAAGTAT+TGG 0.430524 8.4:+56351744 MS.gene94061:CDS
AACTTATGCAAAAGAGTTTG+AGG 0.450069 8.4:+56352456 MS.gene94061:CDS
CCCTGATTCCGAAGAAGCAT+TGG 0.450167 8.4:+56355484 MS.gene94061:CDS
AAGAGTATTTGAACTCTTTG+CGG 0.450951 8.4:+56352500 MS.gene94061:CDS
TACTGTATGTGCCCAAATAG+AGG 0.461718 8.4:-56353198 None:intergenic
CCAATGCTTCTTCGGAATCA+GGG 0.466066 8.4:-56355484 None:intergenic
TGAAGCTCCATGGATAATCT+TGG 0.475912 8.4:-56355643 None:intergenic
CCATTTACAGAGGAGTTACA+AGG 0.477815 8.4:+56350819 MS.gene94061:CDS
GGTGAAAGTGATATCAATAT+CGG 0.479712 8.4:+56355821 MS.gene94061:CDS
CAAATTAGACATAGATGGAC+TGG 0.497245 8.4:+56350962 MS.gene94061:intron
ATTGCGCATTCATGACTAGT+TGG 0.500701 8.4:-56355593 None:intergenic
AACTCAAGAAGAGGCAGCAG+TGG 0.504028 8.4:+56355313 MS.gene94061:CDS
CAACTACATGGACAAATTGA+AGG 0.505278 8.4:+56355397 MS.gene94061:CDS
TTTGTATCATTCAAATGAAG+AGG 0.512964 8.4:+56350630 None:intergenic
ACTGTAGTGGTTGAAGATGA+TGG 0.521228 8.4:-56355956 None:intergenic
GAACCTTGTGGTGGTGGTCA+TGG 0.524163 8.4:+56355800 MS.gene94061:CDS
ACAATTTCTGTGTTTGATTG+TGG 0.530549 8.4:-56355452 None:intergenic
CTGTAGTGGTTGAAGATGAT+GGG 0.533520 8.4:-56355955 None:intergenic
ACGGAAGAACCTTGTGGTGG+TGG 0.534175 8.4:+56355794 MS.gene94061:CDS
GAACAAGATTCAGAACAAGA+AGG 0.536583 8.4:+56351021 MS.gene94061:CDS
TGAGAATAGTAACAAGGAGA+AGG 0.537399 8.4:+56355901 MS.gene94061:CDS
CCATTATACATGAAGCTCCA+TGG 0.539343 8.4:-56355653 None:intergenic
GAGGACTTTCTAAATACCGT+GGG 0.549435 8.4:+56352545 MS.gene94061:CDS
TATTGAAGAAACTCAAGAAG+AGG 0.551880 8.4:+56355304 MS.gene94061:intron
TGTTGAAATTGTTGCTGCGA+AGG 0.552598 8.4:-56355560 None:intergenic
GGTCGGTGGGAAGCTCGCAT+TGG 0.557991 8.4:+56353154 MS.gene94061:CDS
TTGTTAGAGTTTCAAGACAC+AGG 0.560148 8.4:+56355677 MS.gene94061:CDS
GCTTATATCAAAATTGGTCA+CGG 0.566773 8.4:-56355375 None:intergenic
GCTCGCATTGGAAGAGTTCG+TGG 0.568186 8.4:+56353166 MS.gene94061:CDS
GCGCATTCATGACTAGTTGG+AGG 0.568657 8.4:-56355590 None:intergenic
GATGATGAACTTGAAGATGG+TGG 0.569284 8.4:-56350656 None:intergenic
AAGATTTGAAGCTCATCTAT+GGG 0.572069 8.4:+56350985 MS.gene94061:CDS
CAGAACAAGAAGGGAAAACA+AGG 0.573233 8.4:+56351031 MS.gene94061:CDS
AACAAGATTCAGAACAAGAA+GGG 0.581787 8.4:+56351022 MS.gene94061:CDS
AGATGCCGAAAATATGGTTG+TGG 0.585464 8.4:+56355877 MS.gene94061:CDS
CAATGCTTCTTCGGAATCAG+GGG 0.588294 8.4:-56355483 None:intergenic
GAAGATGATGAACTTGAAGA+TGG 0.588912 8.4:-56350659 None:intergenic
GGCATCACCATAATGGTCGG+TGG 0.592230 8.4:+56353140 MS.gene94061:intron
CTTGCAGCACTCAAGTATTG+GGG 0.601900 8.4:+56351746 MS.gene94061:CDS
TCTTTGCGGCGGCAAAGCAG+TGG 0.603859 8.4:+56352514 MS.gene94061:CDS
GCATCACCATAATGGTCGGT+GGG 0.611752 8.4:+56353141 MS.gene94061:CDS
AGAGGACTTTCTAAATACCG+TGG 0.626454 8.4:+56352544 MS.gene94061:CDS
TCACCATGACCACCACCACA+AGG 0.649319 8.4:-56355803 None:intergenic
TTGCAGCACTCAAGTATTGG+GGG 0.650524 8.4:+56351747 MS.gene94061:CDS
TGTGGATGAGAATAGTAACA+AGG 0.651136 8.4:+56355895 MS.gene94061:CDS
GATCTAACCTGGCAACCCCA+CGG 0.652639 8.4:-56352561 None:intergenic
AGAAGAAGCTCCATTTACAG+AGG 0.653025 8.4:+56350809 MS.gene94061:CDS
AGTATTTGAACTCTTTGCGG+CGG 0.655198 8.4:+56352503 MS.gene94061:CDS
CTACATGGACAAATTGAAGG+TGG 0.658749 8.4:+56355400 MS.gene94061:CDS
TGTAGTGGTTGAAGATGATG+GGG 0.666549 8.4:-56355954 None:intergenic
ATAGGCATCACCATAATGGT+CGG 0.667124 8.4:+56353137 MS.gene94061:intron
TAGTTACAAAGAAACTGTAG+TGG 0.679816 8.4:-56355969 None:intergenic
GGTTCGACTATGAGCAAATG+CGG 0.681506 8.4:+56355698 MS.gene94061:CDS
ATTTGAACTTATGTTCAACA+CGG 0.681855 8.4:+56355775 MS.gene94061:CDS
AACACGGAAGAACCTTGTGG+TGG 0.703150 8.4:+56355791 MS.gene94061:CDS
AGGACTTTCTAAATACCGTG+GGG 0.721413 8.4:+56352546 MS.gene94061:CDS
TTCAACACGGAAGAACCTTG+TGG 0.731490 8.4:+56355788 MS.gene94061:CDS
ATGGCAGCAATAAAGCACAG+AGG 0.789593 8.4:+56355344 MS.gene94061:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTATTAAAGTAATG+TGG - chr8.4:56353023-56353042 None:intergenic 10.0%
!! ATATGTTAAATTAAATTGTA+CGG - chr8.4:56352374-56352393 None:intergenic 10.0%
!! TATATAATTAATATGAAACA+CGG - chr8.4:56353594-56353613 None:intergenic 10.0%
!!! AAACAATTTTTGATAAAAAA+TGG - chr8.4:56353248-56353267 None:intergenic 10.0%
!!! AAGATTTTTTTTATTAAAAG+TGG - chr8.4:56354331-56354350 None:intergenic 10.0%
!!! AATAAATTATTATTGATTTG+TGG + chr8.4:56351640-56351659 MS.gene94061:intron 10.0%
!!! ACATATTTTCATTTTTATTA+TGG - chr8.4:56354562-56354581 None:intergenic 10.0%
!!! ATTATTTAGTATTTCTAAAT+TGG + chr8.4:56351799-56351818 MS.gene94061:intron 10.0%
!!! TTTTGAAGTTAATTTAAAAT+TGG - chr8.4:56354838-56354857 None:intergenic 10.0%
!! AATTCAATTAGTGAAAAAAA+AGG + chr8.4:56350706-56350725 MS.gene94061:CDS 15.0%
!! ACATAATTTAGTGTAATTAT+AGG + chr8.4:56353510-56353529 MS.gene94061:intron 15.0%
!! ATATAATTTAGTGTAATCAT+AGG + chr8.4:56351183-56351202 MS.gene94061:intron 15.0%
!! ATTCAATTAGTGAAAAAAAA+GGG + chr8.4:56350707-56350726 MS.gene94061:CDS 15.0%
!! GATTTAATGAATATATTTGA+TGG + chr8.4:56355728-56355747 MS.gene94061:CDS 15.0%
!! TTTCACTATTATTATATTCT+AGG + chr8.4:56354581-56354600 MS.gene94061:intron 15.0%
!!! ATTAATCTTACTTTTTGAAT+AGG + chr8.4:56353119-56353138 MS.gene94061:intron 15.0%
!!! ATTAGTATAATTTTACACTA+AGG - chr8.4:56353983-56354002 None:intergenic 15.0%
!!! ATTTTCTGTGTTAATTTTAA+TGG + chr8.4:56352347-56352366 MS.gene94061:intron 15.0%
!!! CTTGTGAATTTTTTATTATT+TGG + chr8.4:56351305-56351324 MS.gene94061:intron 15.0%
!!! GAAATACTAAATAATTTTAC+CGG - chr8.4:56351794-56351813 None:intergenic 15.0%
!!! TATTTTTTAGAGATTGATAT+TGG + chr8.4:56352101-56352120 MS.gene94061:intron 15.0%
!!! TTAATATTAGCTTTTTTTTC+TGG - chr8.4:56351355-56351374 None:intergenic 15.0%
!!! TTATTTTTCCAAAACAATAT+AGG - chr8.4:56351845-56351864 None:intergenic 15.0%
!!! TTTTCTGTGTTAATTTTAAT+GGG + chr8.4:56352348-56352367 MS.gene94061:intron 15.0%
!!! TTTTTTTTCACTAATTGAAT+TGG - chr8.4:56350707-56350726 None:intergenic 15.0%
!!! TTTTTTTTGTCTTCTTTTTT+TGG + chr8.4:56354130-56354149 MS.gene94061:intron 15.0%
!! AATTGGTCAATAAAAGTAAA+TGG + chr8.4:56351816-56351835 MS.gene94061:intron 20.0%
!! ACAAAAAAAATATTGTTGAC+AGG - chr8.4:56354120-56354139 None:intergenic 20.0%
!! AGATTCTGATTAACTTAATT+TGG + chr8.4:56351665-56351684 MS.gene94061:intron 20.0%
!! ATAATATTATGTACATGACT+TGG + chr8.4:56353033-56353052 MS.gene94061:intron 20.0%
!! CATATATTTAACCATGAATT+TGG - chr8.4:56355182-56355201 None:intergenic 20.0%
!! CTAAAAAATAGTTCAAAGAA+GGG - chr8.4:56352091-56352110 None:intergenic 20.0%
!! TACTATCATAGTTTGATATT+GGG - chr8.4:56354097-56354116 None:intergenic 20.0%
!! TCAACAATAACATTAATACA+TGG + chr8.4:56351979-56351998 MS.gene94061:intron 20.0%
!! TCTAAAAAATAGTTCAAAGA+AGG - chr8.4:56352092-56352111 None:intergenic 20.0%
!! TCTATGGAAAAAAATTAGTT+AGG - chr8.4:56352231-56352250 None:intergenic 20.0%
!! TTGTTGAAAATTTCAAACAT+TGG - chr8.4:56351966-56351985 None:intergenic 20.0%
!! TTGTTTATAGTAACATTGTA+CGG - chr8.4:56354862-56354881 None:intergenic 20.0%
!! TTTGGTTATTATGTTGATAT+AGG + chr8.4:56351683-56351702 MS.gene94061:intron 20.0%
!!! CAAAAATTGTTTCAAACTTT+TGG + chr8.4:56353256-56353275 MS.gene94061:intron 20.0%
!!! GAATATTATTGACTATTAGA+TGG - chr8.4:56352168-56352187 None:intergenic 20.0%
!!! TAATTTTACCGGAAAATTTA+AGG - chr8.4:56351783-56351802 None:intergenic 20.0%
!!! TATTACTTGCTAAAATATCT+CGG - chr8.4:56354929-56354948 None:intergenic 20.0%
! AATTTCTTAAATAGACGATC+AGG - chr8.4:56352262-56352281 None:intergenic 25.0%
! ATAGATGTATCTATCTTACA+TGG - chr8.4:56352327-56352346 None:intergenic 25.0%
! ATAGTCAATAATATTCGTTG+AGG + chr8.4:56352172-56352191 MS.gene94061:intron 25.0%
! ATATAATGATTCTTTGAACC+AGG - chr8.4:56352006-56352025 None:intergenic 25.0%
! ATGAATATGTTACTAACTTG+TGG + chr8.4:56352415-56352434 MS.gene94061:intron 25.0%
! ATGCGCAATAGTTAATATTA+TGG + chr8.4:56355607-56355626 MS.gene94061:CDS 25.0%
! ATTTCTTAAATAGACGATCA+GGG - chr8.4:56352261-56352280 None:intergenic 25.0%
! ATTTGAACTTATGTTCAACA+CGG + chr8.4:56355775-56355794 MS.gene94061:CDS 25.0%
! GTACTATCATAGTTTGATAT+TGG - chr8.4:56354098-56354117 None:intergenic 25.0%
! GTAGTTGCTTATATCAAAAT+TGG - chr8.4:56355384-56355403 None:intergenic 25.0%
! GTCATTTCAAATAATTTCCA+AGG + chr8.4:56351909-56351928 MS.gene94061:intron 25.0%
! TAAATTTGAATGATCTAACC+TGG - chr8.4:56352575-56352594 None:intergenic 25.0%
! TACATGTTTGATATCACATT+AGG + chr8.4:56352736-56352755 MS.gene94061:intron 25.0%
! TATTATGGTTTCACAAGATT+GGG - chr8.4:56354547-56354566 None:intergenic 25.0%
! TCTCATAATTAACGTGAATT+GGG + chr8.4:56353761-56353780 MS.gene94061:intron 25.0%
! TTATTATGGTTTCACAAGAT+TGG - chr8.4:56354548-56354567 None:intergenic 25.0%
! TTCTCATAATTAACGTGAAT+TGG + chr8.4:56353760-56353779 MS.gene94061:intron 25.0%
! TTGATCAAATTAGACATAGA+TGG + chr8.4:56350957-56350976 MS.gene94061:intron 25.0%
! TTTAGTGTAATTATAGGTGT+TGG + chr8.4:56353516-56353535 MS.gene94061:intron 25.0%
!! ACTATGTTTTCTTTAGTGTT+TGG + chr8.4:56351061-56351080 MS.gene94061:intron 25.0%
!! ATGATTCATGTTTGATTTCA+CGG - chr8.4:56352854-56352873 None:intergenic 25.0%
!! TAAATTTTCCTATGTTCCTA+TGG - chr8.4:56353905-56353924 None:intergenic 25.0%
!! TACCATTACCATTTTATCAA+TGG + chr8.4:56352899-56352918 MS.gene94061:intron 25.0%
!! TTTTGATATAAGCAACTACA+TGG + chr8.4:56355385-56355404 MS.gene94061:CDS 25.0%
!!! AAAAATAAGAAGCATCTAGT+TGG + chr8.4:56351857-56351876 MS.gene94061:intron 25.0%
!!! AAAATGGTAATGGTACAAAT+TGG - chr8.4:56352894-56352913 None:intergenic 25.0%
!!! ATTTGTAGTTGATTTTCTTG+TGG - chr8.4:56355536-56355555 None:intergenic 25.0%
!!! TAGTTTTACAAGCTGTAATT+TGG - chr8.4:56353737-56353756 None:intergenic 25.0%
!!! TATTGTATTATTTTGCCATG+TGG + chr8.4:56354359-56354378 MS.gene94061:intron 25.0%
!!! TGTAGTTTTTTGCAAAATCA+AGG - chr8.4:56352785-56352804 None:intergenic 25.0%
!!! TTGACATTGAGATTCTTTTT+TGG - chr8.4:56350743-56350762 None:intergenic 25.0%
AAATCAAGATGCCGAAAATA+TGG + chr8.4:56355871-56355890 MS.gene94061:CDS 30.0%
AACAACAAACAACTTGACTA+TGG - chr8.4:56352937-56352956 None:intergenic 30.0%
AACAAGATTCAGAACAAGAA+GGG + chr8.4:56351022-56351041 MS.gene94061:CDS 30.0%
AACTTATGCAAAAGAGTTTG+AGG + chr8.4:56352456-56352475 MS.gene94061:CDS 30.0%
AACTTGGACCATTGATAAAA+TGG - chr8.4:56352910-56352929 None:intergenic 30.0%
AAGAAAAACCAAACAAATGG+TGG + chr8.4:56350782-56350801 MS.gene94061:CDS 30.0%
AATATACAAATGTGTCACCA+AGG + chr8.4:56354945-56354964 MS.gene94061:intron 30.0%
AATCTATGAGACAGAAAAAG+TGG + chr8.4:56352195-56352214 MS.gene94061:intron 30.0%
ACAATTTCTGTGTTTGATTG+TGG - chr8.4:56355455-56355474 None:intergenic 30.0%
ACCCATCAACAAAATTCAAA+AGG - chr8.4:56350904-56350923 None:intergenic 30.0%
ACTTGACTATGGTTATAACT+TGG - chr8.4:56352926-56352945 None:intergenic 30.0%
ATAACATTAATACATGGACC+TGG + chr8.4:56351985-56352004 MS.gene94061:intron 30.0%
ATATTTGAAGAATCAGTGTC+TGG - chr8.4:56354727-56354746 None:intergenic 30.0%
ATCTATGAGACAGAAAAAGT+GGG + chr8.4:56352196-56352215 MS.gene94061:intron 30.0%
ATCTTATGCATTTATGCACT+CGG - chr8.4:56355143-56355162 None:intergenic 30.0%
CAATGATATATTGGTACAAG+TGG - chr8.4:56352296-56352315 None:intergenic 30.0%
CACTTGTACCAATATATCAT+TGG + chr8.4:56352294-56352313 MS.gene94061:intron 30.0%
CAGAAGAAAAACCAAACAAA+TGG + chr8.4:56350779-56350798 MS.gene94061:CDS 30.0%
CCCATCAACAAAATTCAAAA+GGG - chr8.4:56350903-56350922 None:intergenic 30.0%
GACATGTACCAATGATATAT+TGG - chr8.4:56352305-56352324 None:intergenic 30.0%
GACCATTGATAAAATGGTAA+TGG - chr8.4:56352904-56352923 None:intergenic 30.0%
GCTTATATCAAAATTGGTCA+CGG - chr8.4:56355378-56355397 None:intergenic 30.0%
GGAAAAAAATTAGTTAGGAG+AGG - chr8.4:56352226-56352245 None:intergenic 30.0%
GGTAACAAATACCTCTATTT+GGG + chr8.4:56353187-56353206 MS.gene94061:CDS 30.0%
GGTGAAAGTGATATCAATAT+CGG + chr8.4:56355821-56355840 MS.gene94061:CDS 30.0%
GTAAAAGACAAAAATGCACT+TGG + chr8.4:56353668-56353687 MS.gene94061:intron 30.0%
GTCAAATGTTAGATTGAACT+TGG - chr8.4:56354408-56354427 None:intergenic 30.0%
GTTAAATTAGTCCTTGATCA+TGG - chr8.4:56351944-56351963 None:intergenic 30.0%
TACCATTCTCTAATTTCTCT+AGG - chr8.4:56353433-56353452 None:intergenic 30.0%
TATAAGATAAGCATGTTGGA+GGG + chr8.4:56354445-56354464 MS.gene94061:intron 30.0%
TATACTACTGCATCAATTTC+TGG + chr8.4:56353874-56353893 MS.gene94061:intron 30.0%
TATATTTCTTCTGCAACAAG+AGG - chr8.4:56353858-56353877 None:intergenic 30.0%
TATTGAAGAAACTCAAGAAG+AGG + chr8.4:56355304-56355323 MS.gene94061:intron 30.0%
TCATCATCTTCATCTTCTAT+TGG + chr8.4:56350671-56350690 MS.gene94061:CDS 30.0%
TCCAACATGCTTATCTTATA+GGG - chr8.4:56354445-56354464 None:intergenic 30.0%
TGCTTATCTTATAGGGTTTA+AGG - chr8.4:56354438-56354457 None:intergenic 30.0%
TGGTAACAAATACCTCTATT+TGG + chr8.4:56353186-56353205 MS.gene94061:CDS 30.0%
TTTCATACATGTGTGATTAG+AGG + chr8.4:56352708-56352727 MS.gene94061:intron 30.0%
TTTCTTAAATAGACGATCAG+GGG - chr8.4:56352260-56352279 None:intergenic 30.0%
! AAGATTTGAAGCTCATCTAT+GGG + chr8.4:56350985-56351004 MS.gene94061:CDS 30.0%
! AATGGAGTCCTATATTGTTT+TGG + chr8.4:56351834-56351853 MS.gene94061:intron 30.0%
! AATTGTACTTTTCCTGCTTA+TGG - chr8.4:56353359-56353378 None:intergenic 30.0%
! ACCCTTTTGAATTTTGTTGA+TGG + chr8.4:56350899-56350918 MS.gene94061:intron 30.0%
! ATAATTTTTGACCGACATGT+TGG - chr8.4:56354512-56354531 None:intergenic 30.0%
! CCCTTTTGAATTTTGTTGAT+GGG + chr8.4:56350900-56350919 MS.gene94061:intron 30.0%
! GTTCAAATACTCTTCTTTTG+AGG - chr8.4:56352494-56352513 None:intergenic 30.0%
! TATCAATATCGGTGAAGTTT+TGG + chr8.4:56355832-56355851 MS.gene94061:CDS 30.0%
!! AAGAGTATTTGAACTCTTTG+CGG + chr8.4:56352500-56352519 MS.gene94061:CDS 30.0%
!! ATAAGATTTTGACCACATAC+AGG + chr8.4:56355156-56355175 MS.gene94061:intron 30.0%
!!! TCATGCAGTATTTGTTTTGT+TGG + chr8.4:56354382-56354401 MS.gene94061:intron 30.0%
!!! TCTAGCATTTTTTGAAACCA+TGG + chr8.4:56352632-56352651 MS.gene94061:intron 30.0%
!!! TGCTTCATAGATGAGTTTTT+TGG + chr8.4:56351271-56351290 MS.gene94061:intron 30.0%
ACACTGAAACATGTCTAATC+TGG + chr8.4:56353561-56353580 MS.gene94061:intron 35.0%
ACATTTGACAATCCATAAGC+AGG + chr8.4:56353344-56353363 MS.gene94061:intron 35.0%
ACCCTATAAGATAAGCATGT+TGG + chr8.4:56354441-56354460 MS.gene94061:intron 35.0%
ACTGAAACATGTCTAATCTG+GGG + chr8.4:56353563-56353582 MS.gene94061:intron 35.0%
AGACAAGTCAGAGAAAATCA+AGG + chr8.4:56351386-56351405 MS.gene94061:intron 35.0%
AGACATGAATCGAGATTAGA+TGG + chr8.4:56355029-56355048 MS.gene94061:intron 35.0%
AGGAAATTAGTACTTTGCAG+AGG - chr8.4:56353385-56353404 None:intergenic 35.0%
ATCTATGGGATAAGACTTCT+TGG + chr8.4:56350999-56351018 MS.gene94061:CDS 35.0%
ATTCCAAATCCATCTAACCT+TGG - chr8.4:56354965-56354984 None:intergenic 35.0%
CAAATTAGACATAGATGGAC+TGG + chr8.4:56350962-56350981 MS.gene94061:intron 35.0%
CAACTACATGGACAAATTGA+AGG + chr8.4:56355397-56355416 MS.gene94061:CDS 35.0%
CAATTTCCAGTATTGTTGAC+AGG - chr8.4:56354165-56354184 None:intergenic 35.0%
CACTGAAACATGTCTAATCT+GGG + chr8.4:56353562-56353581 MS.gene94061:intron 35.0%
CGTGACATCTTTATTAAGCA+TGG - chr8.4:56353315-56353334 None:intergenic 35.0%
CTATAAGATAAGCATGTTGG+AGG + chr8.4:56354444-56354463 MS.gene94061:intron 35.0%
CTCCAACATGCTTATCTTAT+AGG - chr8.4:56354446-56354465 None:intergenic 35.0%
GAACAAGATTCAGAACAAGA+AGG + chr8.4:56351021-56351040 MS.gene94061:CDS 35.0%
GAAGATGATGAACTTGAAGA+TGG - chr8.4:56350662-56350681 None:intergenic 35.0%
GATCATGGCTAAAATAACCT+TGG - chr8.4:56351929-56351948 None:intergenic 35.0%
GATTAGACATGTTTCAGTGT+CGG - chr8.4:56353561-56353580 None:intergenic 35.0%
GGAAGAAGAAGAAGAATCTA+AGG - chr8.4:56355936-56355955 None:intergenic 35.0%
TGAGAATAGTAACAAGGAGA+AGG + chr8.4:56355901-56355920 MS.gene94061:CDS 35.0%
TGATGAGTTTCTATGAAGCA+CGG + chr8.4:56351092-56351111 MS.gene94061:intron 35.0%
TGCAAAAGAGTTTGAGGAAA+TGG + chr8.4:56352462-56352481 MS.gene94061:CDS 35.0%
TGCTTAATAAAGATGTCACG+TGG + chr8.4:56353315-56353334 MS.gene94061:intron 35.0%
TGTGGATGAGAATAGTAACA+AGG + chr8.4:56355895-56355914 MS.gene94061:CDS 35.0%
TTGAATAGGCATCACCATAA+TGG + chr8.4:56353133-56353152 MS.gene94061:intron 35.0%
TTGTTAGAGTTTCAAGACAC+AGG + chr8.4:56355677-56355696 MS.gene94061:CDS 35.0%
TTGTTCTTCCAATGCTTCTT+CGG - chr8.4:56355495-56355514 None:intergenic 35.0%
! ATAGTTCAAAGAAGGGTATG+TGG - chr8.4:56352084-56352103 None:intergenic 35.0%
! CGATGCAACCTTAAATTTTC+CGG + chr8.4:56351772-56351791 MS.gene94061:CDS 35.0%
! CTCATCCACAACCATATTTT+CGG - chr8.4:56355885-56355904 None:intergenic 35.0%
! GAAGATTTGAAGCTCATCTA+TGG + chr8.4:56350984-56351003 MS.gene94061:CDS 35.0%
! GCGGATGGTTTAGTTTATTT+GGG + chr8.4:56351542-56351561 MS.gene94061:intron 35.0%
! TGACACTTTTGCAAGTATCT+GGG + chr8.4:56352963-56352982 MS.gene94061:intron 35.0%
! TGCGGATGGTTTAGTTTATT+TGG + chr8.4:56351541-56351560 MS.gene94061:intron 35.0%
! TGGGTTAAAGCTGGAATTTT+AGG + chr8.4:56353780-56353799 MS.gene94061:intron 35.0%
!! GTAATTATAGGTGTTGGTGT+CGG + chr8.4:56353522-56353541 MS.gene94061:intron 35.0%
!! GTTTTGACCAAGATTATCCA+TGG + chr8.4:56355636-56355655 MS.gene94061:CDS 35.0%
!! TAGATTTTAACCTTTGCAGC+TGG - chr8.4:56353934-56353953 None:intergenic 35.0%
!! TGTAGTTGATTTTCTTGTGG+AGG - chr8.4:56355533-56355552 None:intergenic 35.0%
!!! AATATCGGTGAAGTTTTGGA+GGG + chr8.4:56355836-56355855 MS.gene94061:CDS 35.0%
!!! GGTTATTTTAGCCATGATCA+AGG + chr8.4:56351930-56351949 MS.gene94061:intron 35.0%
AACGTGAATTGGGTTAAAGC+TGG + chr8.4:56353771-56353790 MS.gene94061:intron 40.0%
AATGTGTCACCAAGGTTAGA+TGG + chr8.4:56354953-56354972 MS.gene94061:intron 40.0%
ACAAATACTGCATGACCACA+TGG - chr8.4:56354377-56354396 None:intergenic 40.0%
ACTCATTGGATTAAGCGTGT+GGG - chr8.4:56351246-56351265 None:intergenic 40.0%
ACTGTAGTGGTTGAAGATGA+TGG - chr8.4:56355959-56355978 None:intergenic 40.0%
AGAAGAAGCTCCATTTACAG+AGG + chr8.4:56350809-56350828 MS.gene94061:CDS 40.0%
AGAGGACTTTCTAAATACCG+TGG + chr8.4:56352544-56352563 MS.gene94061:CDS 40.0%
AGATGCCGAAAATATGGTTG+TGG + chr8.4:56355877-56355896 MS.gene94061:CDS 40.0%
AGGACTTTCTAAATACCGTG+GGG + chr8.4:56352546-56352565 MS.gene94061:CDS 40.0%
AGTATTTGAACTCTTTGCGG+CGG + chr8.4:56352503-56352522 MS.gene94061:CDS 40.0%
ATAGGCATCACCATAATGGT+CGG + chr8.4:56353137-56353156 MS.gene94061:intron 40.0%
ATCACTATTCACGTGCTTAC+TGG - chr8.4:56354704-56354723 None:intergenic 40.0%
ATCTTGCAGCACTCAAGTAT+TGG + chr8.4:56351744-56351763 MS.gene94061:CDS 40.0%
ATTAATGTCCGTGTCGTATC+TGG - chr8.4:56351132-56351151 None:intergenic 40.0%
ATTGCGCATTCATGACTAGT+TGG - chr8.4:56355596-56355615 None:intergenic 40.0%
CAGAACAAGAAGGGAAAACA+AGG + chr8.4:56351031-56351050 MS.gene94061:CDS 40.0%
CATTCATGCAATCGACACAT+CGG + chr8.4:56355006-56355025 MS.gene94061:intron 40.0%
CCATGGAGCTTCATGTATAA+TGG + chr8.4:56355653-56355672 MS.gene94061:CDS 40.0%
CCATTATACATGAAGCTCCA+TGG - chr8.4:56355656-56355675 None:intergenic 40.0%
CCATTTACAGAGGAGTTACA+AGG + chr8.4:56350819-56350838 MS.gene94061:CDS 40.0%
CCTTGTAACTCCTCTGTAAA+TGG - chr8.4:56350822-56350841 None:intergenic 40.0%
CGATCAGGGGTTTAATTCTA+TGG - chr8.4:56352247-56352266 None:intergenic 40.0%
CTAATTTCTCTAGGCCTTTG+TGG - chr8.4:56353424-56353443 None:intergenic 40.0%
CTACATGGACAAATTGAAGG+TGG + chr8.4:56355400-56355419 MS.gene94061:CDS 40.0%
CTGTAGTGGTTGAAGATGAT+GGG - chr8.4:56355958-56355977 None:intergenic 40.0%
GAGGACTTTCTAAATACCGT+GGG + chr8.4:56352545-56352564 MS.gene94061:CDS 40.0%
GATGATGAACTTGAAGATGG+TGG - chr8.4:56350659-56350678 None:intergenic 40.0%
GGCCTAGAGAAATTAGAGAA+TGG + chr8.4:56353428-56353447 MS.gene94061:intron 40.0%
TACTGTATGTGCCCAAATAG+AGG - chr8.4:56353201-56353220 None:intergenic 40.0%
TATGAAGCAGAGACACTCAT+TGG - chr8.4:56351260-56351279 None:intergenic 40.0%
TCTTGCAGCACTCAAGTATT+GGG + chr8.4:56351745-56351764 MS.gene94061:CDS 40.0%
TGAAGCTCCATGGATAATCT+TGG - chr8.4:56355646-56355665 None:intergenic 40.0%
TGTAGATACTGCATGAGTCA+AGG - chr8.4:56354481-56354500 None:intergenic 40.0%
TGTAGTGGTTGAAGATGATG+GGG - chr8.4:56355957-56355976 None:intergenic 40.0%
TGTTGAAATTGTTGCTGCGA+AGG - chr8.4:56355563-56355582 None:intergenic 40.0%
TTCTACTGCCACCATTTGTT+TGG - chr8.4:56350793-56350812 None:intergenic 40.0%
TTTAATACAGCCAGCTGCAA+AGG + chr8.4:56353921-56353940 MS.gene94061:intron 40.0%
! CAAAGCAGTGGTTTTTCTAG+AGG + chr8.4:56352526-56352545 MS.gene94061:CDS 40.0%
! GAAGTACCTGTCAACAATAC+TGG + chr8.4:56354156-56354175 MS.gene94061:intron 40.0%
! GTGACACTTTTGCAAGTATC+TGG + chr8.4:56352962-56352981 MS.gene94061:intron 40.0%
! TCACCAAGGTTAGATGGATT+TGG + chr8.4:56354959-56354978 MS.gene94061:intron 40.0%
! TGTAATCATAGGTGTCGTGT+CGG + chr8.4:56351194-56351213 MS.gene94061:intron 40.0%
!! AGTTGATTTTCTTGTGGAGG+CGG - chr8.4:56355530-56355549 None:intergenic 40.0%
!! CAATATCGGTGAAGTTTTGG+AGG + chr8.4:56355835-56355854 MS.gene94061:CDS 40.0%
!! TCAATTTCTGGTCTCACCAT+AGG + chr8.4:56353886-56353905 MS.gene94061:intron 40.0%
ACTGTGTCTCAAAACGGATC+CGG + chr8.4:56352659-56352678 MS.gene94061:intron 45.0%
AGTTTCTATGAAGCACGGAC+AGG + chr8.4:56351097-56351116 MS.gene94061:intron 45.0%
ATAGTCGACTGCAGACAATC+CGG - chr8.4:56352681-56352700 None:intergenic 45.0%
ATGGCAGCAATAAAGCACAG+AGG + chr8.4:56355344-56355363 MS.gene94061:CDS 45.0%
CAATGCTTCTTCGGAATCAG+GGG - chr8.4:56355486-56355505 None:intergenic 45.0%
CACGTATACCAGATACGACA+CGG + chr8.4:56351121-56351140 MS.gene94061:intron 45.0%
CACGTGCTTACTGGATACTT+GGG - chr8.4:56354695-56354714 None:intergenic 45.0%
CACTCATTGGATTAAGCGTG+TGG - chr8.4:56351247-56351266 None:intergenic 45.0%
CATTTATGCACTCGGCACAT+TGG - chr8.4:56355135-56355154 None:intergenic 45.0%
CCAATGCTTCTTCGGAATCA+GGG - chr8.4:56355487-56355506 None:intergenic 45.0%
CCACATACAGGCCAAATTCA+TGG + chr8.4:56355168-56355187 MS.gene94061:intron 45.0%
CCATGAATTTGGCCTGTATG+TGG - chr8.4:56355171-56355190 None:intergenic 45.0%
GCAACGTTCACAATCACTTG+CGG + chr8.4:56351523-56351542 MS.gene94061:intron 45.0%
GGTGCAACTGTGTCTCAAAA+CGG + chr8.4:56352653-56352672 MS.gene94061:intron 45.0%
GGTTCGACTATGAGCAAATG+CGG + chr8.4:56355698-56355717 MS.gene94061:CDS 45.0%
TCACGTGCTTACTGGATACT+TGG - chr8.4:56354696-56354715 None:intergenic 45.0%
TCCAATGCTTCTTCGGAATC+AGG - chr8.4:56355488-56355507 None:intergenic 45.0%
TGCTTACTGGATACTTGGGT+GGG - chr8.4:56354691-56354710 None:intergenic 45.0%
TGGTCTCACCATAGGAACAT+AGG + chr8.4:56353894-56353913 MS.gene94061:intron 45.0%
TTCAACACGGAAGAACCTTG+TGG + chr8.4:56355788-56355807 MS.gene94061:CDS 45.0%
TTTGTGTCCACAGTCCACAA+AGG + chr8.4:56353407-56353426 MS.gene94061:intron 45.0%
! CTTGAGTGCTGCAAGATCAT+AGG - chr8.4:56351741-56351760 None:intergenic 45.0%
! CTTGCAGCACTCAAGTATTG+GGG + chr8.4:56351746-56351765 MS.gene94061:CDS 45.0%
! GTGGACTGTGGACACAAATT+AGG - chr8.4:56353405-56353424 None:intergenic 45.0%
! GTTAGCATCCGTGTCTTGTT+CGG - chr8.4:56353468-56353487 None:intergenic 45.0%
! TTGATTTTCTTGTGGAGGCG+GGG - chr8.4:56355528-56355547 None:intergenic 45.0%
! TTTGAGACACAGTTGCACCA+TGG - chr8.4:56352652-56352671 None:intergenic 45.0%
! TTTTGACCGACATGTTGGCA+GGG - chr8.4:56354507-56354526 None:intergenic 45.0%
! TTTTTGACCGACATGTTGGC+AGG - chr8.4:56354508-56354527 None:intergenic 45.0%
!! GTTGATTTTCTTGTGGAGGC+GGG - chr8.4:56355529-56355548 None:intergenic 45.0%
!! TTGCAGCACTCAAGTATTGG+GGG + chr8.4:56351747-56351766 MS.gene94061:CDS 45.0%
!!! TATAATTTTTTTAGATTTTA+AGG - chr8.4:56354306-56354325 None:intergenic 5.0%
!!! TTTGATTTTAATTATTTTAA+TGG + chr8.4:56351449-56351468 MS.gene94061:intron 5.0%
AACACGGAAGAACCTTGTGG+TGG + chr8.4:56355791-56355810 MS.gene94061:CDS 50.0%
AACTCAAGAAGAGGCAGCAG+TGG + chr8.4:56355313-56355332 MS.gene94061:CDS 50.0%
ACAATCCCCTGCCAACATGT+CGG + chr8.4:56354498-56354517 MS.gene94061:intron 50.0%
CAACCAGCACAACTCACACA+TGG - chr8.4:56353808-56353827 None:intergenic 50.0%
CACAGACACCGAACAAGACA+CGG + chr8.4:56353457-56353476 MS.gene94061:intron 50.0%
CGGACATTAATACGCTGACG+CGG + chr8.4:56351141-56351160 MS.gene94061:intron 50.0%
CGTTCACAATCACTTGCGGA+TGG + chr8.4:56351527-56351546 MS.gene94061:intron 50.0%
CTTACTGGATACTTGGGTGG+GGG - chr8.4:56354689-56354708 None:intergenic 50.0%
GCATCACCATAATGGTCGGT+GGG + chr8.4:56353141-56353160 MS.gene94061:CDS 50.0%
GCTTACTGGATACTTGGGTG+GGG - chr8.4:56354690-56354709 None:intergenic 50.0%
GGCAGCAGTGGCTTATGATA+TGG + chr8.4:56355325-56355344 MS.gene94061:CDS 50.0%
GTGCTTACTGGATACTTGGG+TGG - chr8.4:56354692-56354711 None:intergenic 50.0%
TTATGCACTCGGCACATTGG+TGG - chr8.4:56355132-56355151 None:intergenic 50.0%
TTTGACCGACATGTTGGCAG+GGG - chr8.4:56354506-56354525 None:intergenic 50.0%
! CCCTGATTCCGAAGAAGCAT+TGG + chr8.4:56355484-56355503 MS.gene94061:CDS 50.0%
! GCGCATTCATGACTAGTTGG+AGG - chr8.4:56355593-56355612 None:intergenic 50.0%
ACGGAAGAACCTTGTGGTGG+TGG + chr8.4:56355794-56355813 MS.gene94061:CDS 55.0%
CTAAATACCGTGGGGTTGCC+AGG + chr8.4:56352554-56352573 MS.gene94061:CDS 55.0%
GAGCTTCCCACCGACCATTA+TGG - chr8.4:56353150-56353169 None:intergenic 55.0%
GATCTAACCTGGCAACCCCA+CGG - chr8.4:56352564-56352583 None:intergenic 55.0%
GCTCCATGTGTGAGTTGTGC+TGG + chr8.4:56353802-56353821 MS.gene94061:intron 55.0%
GCTCGCATTGGAAGAGTTCG+TGG + chr8.4:56353166-56353185 MS.gene94061:CDS 55.0%
GGCATCACCATAATGGTCGG+TGG + chr8.4:56353140-56353159 MS.gene94061:intron 55.0%
TCACCATGACCACCACCACA+AGG - chr8.4:56355806-56355825 None:intergenic 55.0%
! CATAGGTGTCGTGTCGGTGT+TGG + chr8.4:56351200-56351219 MS.gene94061:intron 55.0%
! CTCTAGGCCTTTGTGGACTG+TGG - chr8.4:56353417-56353436 None:intergenic 55.0%
!! GAACCTTGTGGTGGTGGTCA+TGG + chr8.4:56355800-56355819 MS.gene94061:CDS 55.0%
TAAGCGTGTGGGACACGCGT+AGG - chr8.4:56351235-56351254 None:intergenic 60.0%
TCTTTGCGGCGGCAAAGCAG+TGG + chr8.4:56352514-56352533 MS.gene94061:CDS 60.0%
GGTCGGTGGGAAGCTCGCAT+TGG + chr8.4:56353154-56353173 MS.gene94061:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 56350644 56355988 56350644 ID=MS.gene94061
chr8.4 mRNA 56350644 56355988 56350644 ID=MS.gene94061.t1;Parent=MS.gene94061
chr8.4 exon 56350644 56350840 56350644 ID=MS.gene94061.t1.exon1;Parent=MS.gene94061.t1
chr8.4 CDS 56350644 56350840 56350644 ID=cds.MS.gene94061.t1;Parent=MS.gene94061.t1
chr8.4 exon 56350970 56351052 56350970 ID=MS.gene94061.t1.exon2;Parent=MS.gene94061.t1
chr8.4 CDS 56350970 56351052 56350970 ID=cds.MS.gene94061.t1;Parent=MS.gene94061.t1
chr8.4 exon 56351555 56351563 56351555 ID=MS.gene94061.t1.exon3;Parent=MS.gene94061.t1
chr8.4 CDS 56351555 56351563 56351555 ID=cds.MS.gene94061.t1;Parent=MS.gene94061.t1
chr8.4 exon 56351705 56351793 56351705 ID=MS.gene94061.t1.exon4;Parent=MS.gene94061.t1
chr8.4 CDS 56351705 56351793 56351705 ID=cds.MS.gene94061.t1;Parent=MS.gene94061.t1
chr8.4 exon 56352451 56352575 56352451 ID=MS.gene94061.t1.exon5;Parent=MS.gene94061.t1
chr8.4 CDS 56352451 56352575 56352451 ID=cds.MS.gene94061.t1;Parent=MS.gene94061.t1
chr8.4 exon 56353141 56353217 56353141 ID=MS.gene94061.t1.exon6;Parent=MS.gene94061.t1
chr8.4 CDS 56353141 56353217 56353141 ID=cds.MS.gene94061.t1;Parent=MS.gene94061.t1
chr8.4 exon 56355312 56355988 56355312 ID=MS.gene94061.t1.exon7;Parent=MS.gene94061.t1
chr8.4 CDS 56355312 56355988 56355312 ID=cds.MS.gene94061.t1;Parent=MS.gene94061.t1
Gene Sequence

>MS.gene94061

ATGAAGAGGTCTCCACCATCTTCAAGTTCATCATCTTCATCTTCTATTGGATTCGAGAATCCAATTCAATTAGTGAAAAAAAAGGGTGCTAAGAATCCAAAAAAGAATCTCAATGTCAAATCACAGAATTTAAAGCAGAAGAAAAACCAAACAAATGGTGGCAGTAGAAGAAGCTCCATTTACAGAGGAGTTACAAGGTTTGAAATTTAATCACTTTTCTTAATTTTTTCAATTTTTTTTTTTACATTTTTGATGACCCTTTTGAATTTTGTTGATGGGTTTTTAGTTTCATTTGCATGTCACTTATTTTTGTTTGATCAAATTAGACATAGATGGACTGGAAGATTTGAAGCTCATCTATGGGATAAGACTTCTTGGAACAAGATTCAGAACAAGAAGGGAAAACAAGGTAATTTTACTATGTTTTCTTTAGTGTTTGGTTTTTCTTTGATGAGTTTCTATGAAGCACGGACAGGACACGTATACCAGATACGACACGGACATTAATACGCTGACGCGGAAAATAATTTGAAAAAATGATATAATTTAGTGTAATCATAGGTGTCGTGTCGGTGTTGGTGTCAGACACCTACGCGTGTCCCACACGCTTAATCCAATGAGTGTCTCTGCTTCATAGATGAGTTTTTTGGTGTATTTTTTTCTTGTGAATTTTTTATTATTTGGTTAGTAATATGTGATTAAATTAAGCCAGAAAAAAAAGCTAATATTAAAAAAATAGAGAAGACAAGTCAGAGAAAATCAAGGAGATCTATGATGTTTTTATTATTATTTTAATCTTAACTTTTTTGATTTTAATTATTTTAATGGTGATTATTTTCTATTTTCTGACTTTGTTGTATTCTTTGCAATCTCTGTCTTGCAACGTTCACAATCACTTGCGGATGGTTTAGTTTATTTGGGTAAGTCTTCTTTGTCATACACTTTGATCTCACACAATCTTAGTCAACTTTTTCAATTTTATAAATTATTAATATTAATAAATTATTATTGATTTGTGGAAAGATTCTGATTAACTTAATTTGGTTATTATGTTGATATAGGTGCTTATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCACTCAAGTATTGGGGGAACGATGCAACCTTAAATTTTCCGGTAAAATTATTTAGTATTTCTAAATTGGTCAATAAAAGTAAATGGAGTCCTATATTGTTTTGGAAAAATAAGAAGCATCTAGTTGGTCTCAAAATTCAAATGTCAAGTCAAATTAGTCATTTCAAATAATTTCCAAGGTTATTTTAGCCATGATCAAGGACTAATTTAACCAATGTTTGAAATTTTCAACAATAACATTAATACATGGACCTGGTTCAAAGAATCATTATATTTAAGTAATTTTTGATAAAATATTATTTTTGCTCTACAATTTTTAATTAAAAATGCCACATACCCTTCTTTGAACTATTTTTTAGAGATTGATATTGGAATCTTTTTGTTATGTTGTTATCGATATGAAGTTTACACTACCATCTAATAGTCAATAATATTCGTTGAGGAATCTATGAGACAGAAAAAGTGGGTTATCCTCTCCTAACTAATTTTTTTCCATAGAATTAAACCCCTGATCGTCTATTTAAGAAATTCAAATCTCTTACCACTTGTACCAATATATCATTGGTACATGTCCATGTAAGATAGATACATCTATATTTTCTGTGTTAATTTTAATGGGCCGTACAATTTAATTTAACATATTGTTGACATTTCTTTAATGAAATGAATATGTTACTAACTTGTGGAAAAACTATGCAGATAGAAACTTATGCAAAAGAGTTTGAGGAAATGGACAAAGCCTCAAAAGAAGAGTATTTGAACTCTTTGCGGCGGCAAAGCAGTGGTTTTTCTAGAGGACTTTCTAAATACCGTGGGGTTGCCAGGTTAGATCATTCAAATTTATACAACTCATTTCATTCTAAATCGAAAATTTAAATTCTCTAGCATTTTTTGAAACCATGGTGCAACTGTGTCTCAAAACGGATCCGGATTGTCTGCAGTCGACTATACGTGCATTTCATACATGTGTGATTAGAGGTTTCATACATGTTTGATATCACATTAGGTTTGTCATTATTAAGCAGTGTCGCCTTGATTTTGCAAAAAACTACACAAAATGTAATTTTTGCAAAATCACAACAGTTATTCAATCAACTCACCGTGAAATCAAACATGAATCATATAGTAAACAACACAAACCAATTTGTACCATTACCATTTTATCAATGGTCCAAGTTATAACCATAGTCAAGTTGTTTGTTGTTTGTTTGTGACACTTTTGCAAGTATCTGGGTGTTAAGTGTTAAGCATTTTTTTAAACACAGTGTCCACATTACTTTAATAATATTATGTACATGACTTGGTTGCTGTCATTATTTGCAGTTAAAATATTTTATGAAATTAAAAGTATATGCTATCAATTATATATTAATCTTACTTTTTGAATAGGCATCACCATAATGGTCGGTGGGAAGCTCGCATTGGAAGAGTTCGTGGTAACAAATACCTCTATTTGGGCACATACAGTAAGTTTAATATGTCACTTCTATTTTCCATTTTTTATCAAAAATTGTTTCAAACTTTTGGACTGTGTCTCTCTCTACTTATGAAATTGCAAAACCATGCTTAATAAAGATGTCACGTGGCATGTGACATTTGACAATCCATAAGCAGGAAAAGTACAATTTGTCCTCTGCAAAGTACTAATTTCCTAATTTGTGTCCACAGTCCACAAAGGCCTAGAGAAATTAGAGAATGGTACGAACACAGACACCGAACAAGACACGGATGCTAACACATTGACACTGTTAATAATTTACATAATTTAGTGTAATTATAGGTGTTGGTGTCGGACACGATATATGTCCGACACTGAAACATGTCTAATCTGGGGAAAGTCCGTGTTTCATATTAATTATATACAAAAGTTTTAGTGTATATAGAACTAGTAGCTTCATCTAAATTAGATTTTTCAAGTAAAAGACAAAAATGCACTTGGAGATTGCAAGCACATTGAATAACAATACTAGTATATTCTGTTACCAAATTACAGCTTGTAAAACTATAGTTCTCATAATTAACGTGAATTGGGTTAAAGCTGGAATTTTAGGCTCCATGTGTGAGTTGTGCTGGTTGCATGAACTGTAGCAGCAGTACTTTTGTCCTCTTGTTGCAGAAGAAATATACTACTGCATCAATTTCTGGTCTCACCATAGGAACATAGGAAAATTTAATACAGCCAGCTGCAAAGGTTAAAATCTAATACTAATTCAAAAATTATAAATATTCCTTAGTGTAAAATTATACTAATACTTCTGAAAAATATATTTTTCATAAAAATATTTAATTATTTTTAATTTATTTATTCTCTAACAAATTCAAAGTGTTAATTTACTAAAGTTCCCAATATCAAACTATGATAGTACCTGTCAACAATATTTTTTTTGTCTTCTTTTTTTGGAAAGAAGTACCTGTCAACAATACTGGAAATTGTATTTTTCATAAATTTTCAAATATTATAGTTGTATTTAAATTAGATGATGACTAGATAGATAAGATTGCTTTTGCTGATGACTAGATAGATAATATATATAAATGTATATGTGTCATACCTTAAAATCTAAAAAAATTATATGCCACTTTTAATAAAAAAAATCTTAATTTTGTTATTGTATTATTTTGCCATGTGGTCATGCAGTATTTGTTTTGTTGGCCAAGTTCAATCTAACATTTGACTATAGAGCCTTAAACCCTATAAGATAAGCATGTTGGAGGGTACATCAGATCCTTGACTCATGCAGTATCTACAATCCCCTGCCAACATGTCGGTCAAAAATTATAGTTAAATATTTCCCAATCTTGTGAAACCATAATAAAAATGAAAATATGTTTCACTATTATTATATTCTAGGTATAAAAAGCTAAGATCAAGTTAAAAAGTTAACTAAAAAAATGGTTAAAAAGTTAACTAGATCTACAAGACATTAACAACTTCCCCCACCCAAGTATCCAGTAAGCACGTGAATAGTGATCCAGACACTGATTCTTCAAATATATTGTTTTTTAACATTGTGAGATTTTATTATGTCATAAAGTTAACTTTATGTAAACTTTTATTCTCTAATGAATTCATTAGTGAACAACCAATTTTAAATTAACTTCAAAAACCGTACAATGTTACTATAAACAAATTGAAACATTTATCAAATCATATATCACTATTTAGATATTATGCCGAGATATTTTAGCAAGTAATATACAAATGTGTCACCAAGGTTAGATGGATTTGGAATGAATCAAGTCAAAATCTTTTGCATTCATGCAATCGACACATCGGAGACATGAATCGAGATTAGATGGTGTAAGAGTTTGATTTTTGTTTTAAGTCTAAAATATCAAGATTGAAATCTCGATATCTGATCATCTTTGTCTAATGACCACCAATGTGCCGAGTGCATAAATGCATAAGATTTTGACCACATACAGGCCAAATTCATGGTTAAATATATGTGTACATGTTTTTAAAATTTCAGTGCTTAATTGTTGATTTTTTTTTAATTAACAATAACATTTTTTAAATAATAAAATCTTATGAGATCAATTTGTTATTTGTATTGAAGAAACTCAAGAAGAGGCAGCAGTGGCTTATGATATGGCAGCAATAAAGCACAGAGGAATCAATGCCGTGACCAATTTTGATATAAGCAACTACATGGACAAATTGAAGGTGGAGAAAAATGATGAAACAGAACAAACAAAACCACAATCAAACACAGAAATTGTTGCTAATTCCCCTGATTCCGAAGAAGCATTGGAAGAACAAACAACAACTACCCCGCCTCCACAAGAAAATCAACTACAAATAGAACCTTCGCAGCAACAATTTCAACAACATGTTCCTCCAACTAGTCATGAATGCGCAATAGTTAATATTATGGATCATTGTTTTGACCAAGATTATCCATGGAGCTTCATGTATAATGGATTGTTAGAGTTTCAAGACACAGGTTCGACTATGAGCAAATGCGGTGATGATGATTTAATGAATATATTTGATGGCTCAAGCTTTGATGATAACATTGAATTTGAACTTATGTTCAACACGGAAGAACCTTGTGGTGGTGGTCATGGTGAAAGTGATATCAATATCGGTGAAGTTTTGGAGGGTATTAATTTATTAAATCAAGATGCCGAAAATATGGTTGTGGATGAGAATAGTAACAAGGAGAAGGATTTATTATCCTTAGATTCTTCTTCTTCTTCCCCATCATCTTCAACCACTACAGTTTCTTTGTAA
Protein sequence

>MS.gene94061.t1

MKRSPPSSSSSSSSSIGFENPIQLVKKKGAKNPKKNLNVKSQNLKQKKNQTNGGSRRSSIYRGVTRHRWTGRFEAHLWDKTSWNKIQNKKGKQVYLGAYDTEEAAARTYDLAALKYWGNDATLNFPIETYAKEFEEMDKASKEEYLNSLRRQSSGFSRGLSKYRGVARHHHNGRWEARIGRVRGNKYLYLGTYKTQEEAAVAYDMAAIKHRGINAVTNFDISNYMDKLKVEKNDETEQTKPQSNTEIVANSPDSEEALEEQTTTTPPPQENQLQIEPSQQQFQQHVPPTSHECAIVNIMDHCFDQDYPWSFMYNGLLEFQDTGSTMSKCGDDDLMNIFDGSSFDDNIEFELMFNTEEPCGGGHGESDINIGEVLEGINLLNQDAENMVVDENSNKEKDLLSLDSSSSSPSSSTTTVSL