Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053083.t1 | XP_013450732.1 | 95.6 | 344 | 14 | 1 | 5 | 348 | 18 | 360 | 7.40E-188 | 666.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053083.t1 | Q93ZC9 | 71.6 | 345 | 97 | 1 | 4 | 348 | 17 | 360 | 5.7e-144 | 511.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053083.t1 | I3SE96 | 95.6 | 344 | 14 | 1 | 5 | 348 | 18 | 360 | 5.4e-188 | 666.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene053083 | -0.815122 | 1.09E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene053083 | -0.804475 | 2.12E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene053083 | -0.808212 | 3.46E-50 | -1.69E-46 |
| MS.gene051367 | MS.gene053083 | 0.80149 | 8.78E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene053083 | -0.810448 | 1.15E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene053083 | -0.812136 | 4.93E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene055765 | 0.807539 | 4.81E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene056311 | 0.805222 | 1.48E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene057499 | 0.809929 | 1.48E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene059052 | 0.805615 | 1.23E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene059837 | -0.835258 | 1.86E-56 | -1.69E-46 |
| MS.gene053083 | MS.gene05996 | -0.804622 | 1.98E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene060595 | 0.872057 | 4.26E-67 | -1.69E-46 |
| MS.gene053083 | MS.gene06077 | -0.809581 | 1.76E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene062121 | 0.809549 | 1.79E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene062294 | -0.837501 | 5.01E-57 | -1.69E-46 |
| MS.gene053083 | MS.gene06298 | 0.81579 | 7.72E-52 | -1.69E-46 |
| MS.gene053083 | MS.gene063965 | -0.810327 | 1.22E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene064707 | -0.816974 | 4.19E-52 | -1.69E-46 |
| MS.gene053083 | MS.gene065183 | 0.808767 | 2.63E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene065502 | -0.83778 | 4.25E-57 | -1.69E-46 |
| MS.gene053083 | MS.gene066003 | -0.801672 | 8.06E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene067401 | 0.808689 | 2.74E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene068771 | -0.835767 | 1.39E-56 | -1.69E-46 |
| MS.gene053083 | MS.gene068788 | 0.819256 | 1.28E-52 | -1.69E-46 |
| MS.gene053083 | MS.gene069568 | -0.835444 | 1.67E-56 | -1.69E-46 |
| MS.gene053083 | MS.gene069569 | -0.826295 | 2.93E-54 | -1.69E-46 |
| MS.gene053083 | MS.gene071172 | 0.812871 | 3.41E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene072181 | 0.802293 | 6.01E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene072303 | -0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene053083 | MS.gene072496 | -0.803574 | 3.27E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene07348 | -0.803146 | 4.01E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene07349 | -0.831581 | 1.54E-55 | -1.69E-46 |
| MS.gene053083 | MS.gene073565 | -0.844216 | 8.67E-59 | -1.69E-46 |
| MS.gene053083 | MS.gene073608 | -0.814388 | 1.58E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene07361 | 0.807262 | 5.51E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene07362 | 0.806363 | 8.53E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene073640 | -0.847925 | 8.50E-60 | -1.69E-46 |
| MS.gene053083 | MS.gene074598 | -0.806857 | 6.71E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene09797 | -0.8022 | 6.28E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene20816 | -0.801212 | 1.00E-48 | -1.69E-46 |
| MS.gene053083 | MS.gene20878 | -0.806115 | 9.62E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene20892 | -0.82908 | 6.29E-55 | -1.69E-46 |
| MS.gene053083 | MS.gene20905 | 0.815012 | 1.15E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene21237 | 0.807864 | 4.10E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene23115 | -0.813934 | 1.99E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene24491 | 0.843272 | 1.55E-58 | -1.69E-46 |
| MS.gene053083 | MS.gene24883 | 0.805425 | 1.34E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene26532 | 0.907641 | 4.07E-81 | -1.69E-46 |
| MS.gene053083 | MS.gene26638 | 0.808601 | 2.86E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene27942 | 0.801637 | 8.20E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene30217 | 0.822395 | 2.42E-53 | -1.69E-46 |
| MS.gene053083 | MS.gene30456 | 0.823866 | 1.10E-53 | -1.69E-46 |
| MS.gene053083 | MS.gene32652 | -0.808679 | 2.75E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene33913 | 0.800936 | 1.14E-48 | -1.69E-46 |
| MS.gene053083 | MS.gene33980 | 0.839547 | 1.48E-57 | -1.69E-46 |
| MS.gene053083 | MS.gene38328 | -0.813143 | 2.97E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene40209 | 0.802012 | 6.87E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene40823 | 0.819444 | 1.16E-52 | -1.69E-46 |
| MS.gene053083 | MS.gene41234 | -0.808192 | 3.50E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene41627 | 0.820022 | 8.54E-53 | -1.69E-46 |
| MS.gene053083 | MS.gene42301 | -0.816792 | 4.61E-52 | -1.69E-46 |
| MS.gene053083 | MS.gene42376 | 0.809802 | 1.58E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene47049 | 0.812301 | 4.54E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene47347 | 0.812428 | 4.26E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene47901 | 0.801179 | 1.02E-48 | -1.69E-46 |
| MS.gene053083 | MS.gene47989 | -0.801536 | 8.60E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene49569 | -0.800436 | 1.44E-48 | -1.69E-46 |
| MS.gene053083 | MS.gene50922 | 0.809112 | 2.22E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene50926 | 0.80953 | 1.81E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene54303 | 0.804569 | 2.03E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene57938 | 0.840118 | 1.05E-57 | -1.69E-46 |
| MS.gene053083 | MS.gene60360 | -0.803929 | 2.76E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene61153 | 0.806171 | 9.36E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene62835 | 0.823452 | 1.37E-53 | -1.69E-46 |
| MS.gene053083 | MS.gene62836 | -0.808761 | 2.64E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene63367 | 0.814588 | 1.43E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene65609 | 0.860026 | 2.75E-63 | -1.69E-46 |
| MS.gene053083 | MS.gene66458 | -0.802803 | 4.72E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene69332 | -0.809499 | 1.84E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene69450 | -0.819165 | 1.34E-52 | -1.69E-46 |
| MS.gene053083 | MS.gene69883 | 0.844142 | 9.08E-59 | -1.69E-46 |
| MS.gene053083 | MS.gene71267 | -0.829702 | 4.44E-55 | -1.69E-46 |
| MS.gene053083 | MS.gene72108 | -0.81486 | 1.24E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene72118 | -0.831177 | 1.94E-55 | -1.69E-46 |
| MS.gene053083 | MS.gene72286 | 0.812564 | 3.98E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene72287 | -0.834958 | 2.22E-56 | -1.69E-46 |
| MS.gene053083 | MS.gene73545 | -0.84492 | 5.60E-59 | -1.69E-46 |
| MS.gene053083 | MS.gene74343 | 0.803928 | 2.76E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene74398 | -0.835099 | 2.04E-56 | -1.69E-46 |
| MS.gene053083 | MS.gene74502 | 0.804223 | 2.40E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene76446 | 0.832266 | 1.04E-55 | -1.69E-46 |
| MS.gene053083 | MS.gene78249 | 0.806167 | 9.38E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene78309 | 0.817637 | 2.97E-52 | -1.69E-46 |
| MS.gene053083 | MS.gene80239 | -0.800877 | 1.17E-48 | -1.69E-46 |
| MS.gene053083 | MS.gene83611 | 0.83214 | 1.12E-55 | -1.69E-46 |
| MS.gene053083 | MS.gene84043 | -0.82623 | 3.04E-54 | -1.69E-46 |
| MS.gene053083 | MS.gene86145 | 0.81327 | 2.79E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene87473 | -0.842876 | 1.98E-58 | -1.69E-46 |
| MS.gene053083 | MS.gene87527 | 0.821034 | 5.00E-53 | -1.69E-46 |
| MS.gene053083 | MS.gene88666 | 0.809814 | 1.57E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene88849 | 0.804237 | 2.38E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene92618 | -0.807525 | 4.84E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene93735 | -0.813763 | 2.17E-51 | -1.69E-46 |
| MS.gene053083 | MS.gene94061 | 0.801535 | 8.60E-49 | -1.69E-46 |
| MS.gene053083 | MS.gene95056 | -0.806554 | 7.77E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene95567 | 0.800005 | 1.77E-48 | -1.69E-46 |
| MS.gene053083 | MS.gene96309 | -0.806406 | 8.36E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene97437 | 0.830139 | 3.47E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053083.t1 | MTR_6g004430 | 95.665 | 346 | 14 | 1 | 3 | 348 | 16 | 360 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053083.t1 | AT3G01640 | 71.387 | 346 | 98 | 1 | 4 | 349 | 33 | 377 | 0.0 | 528 |
| MS.gene053083.t1 | AT3G01640 | 71.387 | 346 | 98 | 1 | 4 | 349 | 17 | 361 | 0.0 | 527 |
| MS.gene053083.t1 | AT5G14470 | 69.253 | 348 | 105 | 2 | 3 | 349 | 16 | 362 | 1.09e-180 | 505 |
Find 87 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCGGGTGGCGCAAGTTTA+TGG | 0.220839 | 6.2:-479675 | MS.gene053083:CDS |
| GCAGCGAATCCTAGTGATTC+TGG | 0.253457 | 6.2:-479453 | MS.gene053083:CDS |
| GTGTTTCAGAGTGGACTTTC+GGG | 0.255531 | 6.2:-479834 | MS.gene053083:intron |
| GACTAGTACATTACATCTTC+AGG | 0.269562 | 6.2:+477602 | None:intergenic |
| CTTAACGGTTGCAAAGAAAT+TGG | 0.270327 | 6.2:+481481 | None:intergenic |
| ATCATAGGAGAGAGTGAAAT+TGG | 0.288571 | 6.2:+480971 | None:intergenic |
| ATAAATGCTGAAGGTTATTA+TGG | 0.304600 | 6.2:-481074 | MS.gene053083:CDS |
| TATGCAAGAGTTGGATTGTT+AGG | 0.308744 | 6.2:-481551 | MS.gene053083:CDS |
| ACCTTCGCAGGTCAAAATTT+CGG | 0.328226 | 6.2:+478879 | None:intergenic |
| TCCGTTTCATTTAAACGATA+AGG | 0.331050 | 6.2:+477635 | None:intergenic |
| TGGAGGAGTTCGATTGCTTA+TGG | 0.341365 | 6.2:-481054 | MS.gene053083:CDS |
| TTCTTGATTTCTACAAAGTT+AGG | 0.363177 | 6.2:-479776 | MS.gene053083:CDS |
| GTTCATGAGAGATGCAAGTT+TGG | 0.363925 | 6.2:+478901 | None:intergenic |
| TGTGTTTCAGAGTGGACTTT+CGG | 0.376289 | 6.2:-479835 | MS.gene053083:intron |
| CTTTCTCTGCTGCAAGGATA+AGG | 0.382614 | 6.2:+479724 | None:intergenic |
| ACGAGGGATGTTAGTATCAT+AGG | 0.390246 | 6.2:+480956 | None:intergenic |
| AAAGAACTGGGAATAGTTGC+AGG | 0.395186 | 6.2:-479705 | MS.gene053083:CDS |
| CTTCTCTTCCAATCATCAAT+TGG | 0.396430 | 6.2:-481402 | MS.gene053083:intron |
| TCCTTATCGTTTAAATGAAA+CGG | 0.408438 | 6.2:-477636 | MS.gene053083:CDS |
| ATATTGTACAGGTCAATGTT+TGG | 0.439879 | 6.2:-477845 | MS.gene053083:intron |
| GTACGGCAGAGGTGGCTTGA+TGG | 0.458445 | 6.2:-479007 | MS.gene053083:CDS |
| GAAATCAAGAAAGCAGTTCA+AGG | 0.463436 | 6.2:+479788 | None:intergenic |
| GAGACATACCAATTGATGAT+TGG | 0.466657 | 6.2:+481394 | None:intergenic |
| AATCCAAGCGATGTATATTA+CGG | 0.470030 | 6.2:-481527 | MS.gene053083:CDS |
| ACTAGTACATTACATCTTCA+GGG | 0.471589 | 6.2:+477603 | None:intergenic |
| CCTTGCAGCAGAGAAAGAAC+TGG | 0.472846 | 6.2:-479718 | MS.gene053083:CDS |
| CAGCGAATCCTAGTGATTCT+GGG | 0.475772 | 6.2:-479452 | MS.gene053083:CDS |
| ATTGGAAGGAACGAGCTTAA+CGG | 0.477232 | 6.2:+481466 | None:intergenic |
| TGATACTAACATCCCTCGTC+AGG | 0.483235 | 6.2:-480952 | MS.gene053083:intron |
| AATGGTAGAGGTTGCTAGGA+AGG | 0.485870 | 6.2:-477792 | MS.gene053083:CDS |
| TCATTTAAACGATAAGGAAA+AGG | 0.488851 | 6.2:+477641 | None:intergenic |
| GGAGCCGCATCAAAATTTAC+AGG | 0.492323 | 6.2:-477767 | MS.gene053083:CDS |
| TTGCCGTAATATACATCGCT+TGG | 0.492684 | 6.2:+481524 | None:intergenic |
| CACAAAGCATATGCAAGAGT+TGG | 0.502332 | 6.2:-481560 | MS.gene053083:CDS |
| AGTGGACTTTCGGGTTCTAG+TGG | 0.508326 | 6.2:-479825 | MS.gene053083:CDS |
| CAAAGTTAGGCATCTAATCA+AGG | 0.511075 | 6.2:-479763 | MS.gene053083:CDS |
| AGGTTGAATGATGAGTTGAT+TGG | 0.514569 | 6.2:+481448 | None:intergenic |
| AGTTGCAGGTCTTCAAGATC+GGG | 0.515184 | 6.2:-479691 | MS.gene053083:CDS |
| ATCTAATCAAGGTGGAGGTT+AGG | 0.525850 | 6.2:-479752 | MS.gene053083:CDS |
| GTAGAGGTTGCTAGGAAGGT+TGG | 0.526618 | 6.2:-477788 | MS.gene053083:CDS |
| TAGTTGCAGGTCTTCAAGAT+CGG | 0.535657 | 6.2:-479692 | MS.gene053083:CDS |
| AAGGAAAACATGGATAAACT+AGG | 0.536324 | 6.2:-479534 | MS.gene053083:CDS |
| GCATCAAAATTTACAGGTAG+CGG | 0.536936 | 6.2:-477761 | MS.gene053083:CDS |
| TAGGATTCGCTGCATAGATA+AGG | 0.537333 | 6.2:+479463 | None:intergenic |
| GCATGGAATTTATATACCAA+TGG | 0.548230 | 6.2:-479511 | MS.gene053083:CDS |
| CCAGTTCTTTCTCTGCTGCA+AGG | 0.550986 | 6.2:+479718 | None:intergenic |
| GCTGCATAGATAAGGTATAG+AGG | 0.555467 | 6.2:+479471 | None:intergenic |
| GAGGATGAATGTCATAAAGC+AGG | 0.556500 | 6.2:-477686 | MS.gene053083:CDS |
| TTCTCAAGCAAAGCTTCTTG+AGG | 0.557200 | 6.2:-477705 | MS.gene053083:CDS |
| AACATGGATAAACTAGGGCA+TGG | 0.559912 | 6.2:-479528 | MS.gene053083:CDS |
| TTTGCTTGAGAAGTCCCCTC+GGG | 0.561551 | 6.2:+477716 | None:intergenic |
| CGATAAGGAAAAGGTTCAAG+AGG | 0.561564 | 6.2:+477650 | None:intergenic |
| TTATGGTGGACTAGTTTACA+TGG | 0.565357 | 6.2:-479658 | MS.gene053083:intron |
| CTAACCTTCCCAGAATCACT+AGG | 0.566815 | 6.2:+479444 | None:intergenic |
| AAAACAGCAATTACCTTCGC+AGG | 0.567464 | 6.2:+478867 | None:intergenic |
| CTTTGCTTGAGAAGTCCCCT+CGG | 0.575545 | 6.2:+477715 | None:intergenic |
| GTGGACTTTCGGGTTCTAGT+GGG | 0.575814 | 6.2:-479824 | MS.gene053083:CDS |
| GTTGTTGCATATTGTCCCGA+GGG | 0.578323 | 6.2:-477731 | MS.gene053083:CDS |
| TGCAGGTTCATAGTAAAGTA+CGG | 0.579586 | 6.2:-479024 | MS.gene053083:intron |
| TCTGCTGCAAGGATAAGGTT+AGG | 0.582026 | 6.2:+479729 | None:intergenic |
| AGGAAAACATGGATAAACTA+GGG | 0.585507 | 6.2:-479533 | MS.gene053083:CDS |
| GGGAGTAGACTCAAATCCAT+TGG | 0.588527 | 6.2:+479495 | None:intergenic |
| ATGTATTGCGAGAGAAGGAA+AGG | 0.589757 | 6.2:-478948 | MS.gene053083:CDS |
| AAGTTGACAAGATCATGAGT+AGG | 0.590139 | 6.2:+481422 | None:intergenic |
| ACAAGATCATGAGTAGGATG+AGG | 0.597219 | 6.2:+481428 | None:intergenic |
| ATAGTAAAGTACGGCAGAGG+TGG | 0.599440 | 6.2:-479015 | MS.gene053083:CDS |
| CATAGATAAGGTATAGAGGT+GGG | 0.601717 | 6.2:+479475 | None:intergenic |
| TAGGCATCTAATCAAGGTGG+AGG | 0.602151 | 6.2:-479757 | MS.gene053083:CDS |
| TGTTGTTGCATATTGTCCCG+AGG | 0.602574 | 6.2:-477732 | MS.gene053083:CDS |
| AATGCTGAAGGTTATTATGG+AGG | 0.608746 | 6.2:-481071 | MS.gene053083:CDS |
| CTTGCAGCAGAGAAAGAACT+GGG | 0.609467 | 6.2:-479717 | MS.gene053083:CDS |
| TTCATAGTAAAGTACGGCAG+AGG | 0.610781 | 6.2:-479018 | MS.gene053083:CDS |
| TGTGAAATCAATGCTTGAAG+TGG | 0.615009 | 6.2:-478972 | MS.gene053083:CDS |
| GTGGCATGTATTGCGAGAGA+AGG | 0.618829 | 6.2:-478953 | MS.gene053083:CDS |
| GAACTTCAACAAGGAAAACA+TGG | 0.620661 | 6.2:-479544 | MS.gene053083:CDS |
| TCAAAATTTACAGGTAGCGG+AGG | 0.626651 | 6.2:-477758 | MS.gene053083:CDS |
| TGCAGGTCTTCAAGATCGGG+TGG | 0.627175 | 6.2:-479688 | MS.gene053083:CDS |
| TGAATGATGAGTTGATTGGA+AGG | 0.628534 | 6.2:+481452 | None:intergenic |
| CGGGTGGCGCAAGTTTATGG+TGG | 0.637422 | 6.2:-479672 | MS.gene053083:CDS |
| GTTGATAGGATAAATGCTGA+AGG | 0.640418 | 6.2:-481083 | MS.gene053083:CDS |
| GCATAGATAAGGTATAGAGG+TGG | 0.644266 | 6.2:+479474 | None:intergenic |
| GAATCCTAGTGATTCTGGGA+AGG | 0.644944 | 6.2:-479448 | MS.gene053083:intron |
| AGATGGTTATATACCTGACG+AGG | 0.645733 | 6.2:+480939 | None:intergenic |
| ATGTTTGGAGATGATGCACT+TGG | 0.681123 | 6.2:-477830 | MS.gene053083:CDS |
| AGTTAGGCATCTAATCAAGG+TGG | 0.684662 | 6.2:-479760 | MS.gene053083:CDS |
| TTGTTGCATATTGTCCCGAG+GGG | 0.693914 | 6.2:-477730 | MS.gene053083:CDS |
| GATGGTTATATACCTGACGA+GGG | 0.721558 | 6.2:+480940 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTGAAAATTTTGAAA+GGG | - | chr6.2:480825-480844 | MS.gene053083:intron | 10.0% |
| !! | TATCAGTTATAAAAATCAAA+TGG | + | chr6.2:480369-480388 | None:intergenic | 15.0% |
| !!! | ATAAAATTCAAAGATTGTTT+TGG | + | chr6.2:478354-478373 | None:intergenic | 15.0% |
| !!! | GATAATTTGAAAATTTTGAA+AGG | - | chr6.2:480824-480843 | MS.gene053083:intron | 15.0% |
| !!! | TTCAAAATTTTCAAATTATC+CGG | + | chr6.2:480824-480843 | None:intergenic | 15.0% |
| !!! | TTTGTATTAAACTTTGTTAT+TGG | - | chr6.2:481302-481321 | MS.gene053083:intron | 15.0% |
| !! | GTACTAATTTATTAATCAGT+AGG | - | chr6.2:480552-480571 | MS.gene053083:intron | 20.0% |
| !! | TGATTAATAAATTAGTACAC+TGG | + | chr6.2:480550-480569 | None:intergenic | 20.0% |
| !! | TTATAAAGTAGTAAGTCATA+TGG | - | chr6.2:478496-478515 | MS.gene053083:intron | 20.0% |
| !!! | ATTCTTTTCTCTAAAATAAG+AGG | - | chr6.2:479920-479939 | MS.gene053083:intron | 20.0% |
| !!! | TAAACAATCTAGTTTAGTTT+GGG | + | chr6.2:478797-478816 | None:intergenic | 20.0% |
| !!! | TTAAACAATCTAGTTTAGTT+TGG | + | chr6.2:478798-478817 | None:intergenic | 20.0% |
| !!! | TTAATTTTAATTGATGATGC+AGG | - | chr6.2:480138-480157 | MS.gene053083:intron | 20.0% |
| !!! | TTATTTTAGAGAAAAGAATC+AGG | + | chr6.2:479919-479938 | None:intergenic | 20.0% |
| ! | AAAAAATCCTGACTCTAATT+TGG | + | chr6.2:479058-479077 | None:intergenic | 25.0% |
| ! | AAAAATCCTGACTCTAATTT+GGG | + | chr6.2:479057-479076 | None:intergenic | 25.0% |
| ! | AAACAAAAGAAAGACCATAA+GGG | + | chr6.2:479186-479205 | None:intergenic | 25.0% |
| ! | ACATCAACTTACTTATTGAT+AGG | - | chr6.2:480419-480438 | MS.gene053083:intron | 25.0% |
| ! | ATAAATGCTGAAGGTTATTA+TGG | - | chr6.2:478105-478124 | MS.gene053083:intron | 25.0% |
| ! | ATCCATAAATTATAGCAAGA+TGG | + | chr6.2:478260-478279 | None:intergenic | 25.0% |
| ! | CAAAGCATAATCATATATGA+TGG | + | chr6.2:480927-480946 | None:intergenic | 25.0% |
| ! | CAACAGATAGAAATATGAAA+AGG | + | chr6.2:479286-479305 | None:intergenic | 25.0% |
| ! | GATAAGTTTATGACTCTAAA+TGG | + | chr6.2:478632-478651 | None:intergenic | 25.0% |
| ! | GGTATGTATATATATTGTAC+AGG | - | chr6.2:481323-481342 | MS.gene053083:intron | 25.0% |
| ! | TAAACAAAAGAAAGACCATA+AGG | + | chr6.2:479187-479206 | None:intergenic | 25.0% |
| ! | TCATTTAAACGATAAGGAAA+AGG | + | chr6.2:481541-481560 | None:intergenic | 25.0% |
| ! | TCCTTATCGTTTAAATGAAA+CGG | - | chr6.2:481543-481562 | MS.gene053083:CDS | 25.0% |
| ! | TGTAATAGCACTATTGTAAA+AGG | + | chr6.2:479817-479836 | None:intergenic | 25.0% |
| ! | TTCCCATTCATTTAATTAGT+TGG | + | chr6.2:481267-481286 | None:intergenic | 25.0% |
| ! | TTCTTGATTTCTACAAAGTT+AGG | - | chr6.2:479403-479422 | MS.gene053083:intron | 25.0% |
| !! | AACACCATAAAGTGATATTT+TGG | - | chr6.2:480050-480069 | MS.gene053083:intron | 25.0% |
| !! | AACCATCTTGCTATAATTTA+TGG | - | chr6.2:478255-478274 | MS.gene053083:intron | 25.0% |
| !! | ACACCATAAAGTGATATTTT+GGG | - | chr6.2:480051-480070 | MS.gene053083:intron | 25.0% |
| !! | TGATGTTTAAGTTTCAAAGT+TGG | + | chr6.2:480405-480424 | None:intergenic | 25.0% |
| !! | TTTTTAATGTCTCTACAACA+TGG | + | chr6.2:479020-479039 | None:intergenic | 25.0% |
| !!! | CAGTGTTTTAAAAATCAAAC+TGG | - | chr6.2:478741-478760 | MS.gene053083:intron | 25.0% |
| !!! | TTAGAGTCAGGATTTTTTTT+TGG | - | chr6.2:479060-479079 | MS.gene053083:intron | 25.0% |
| !!! | TTTTTTTGGCAATTTGATTG+TGG | - | chr6.2:478848-478867 | MS.gene053083:intron | 25.0% |
| AACTAATCTGGTAATTCTCA+AGG | - | chr6.2:480996-481015 | MS.gene053083:CDS | 30.0% | |
| AAGGAAAACATGGATAAACT+AGG | - | chr6.2:479645-479664 | MS.gene053083:intron | 30.0% | |
| AATCCAAGCGATGTATATTA+CGG | - | chr6.2:477652-477671 | MS.gene053083:CDS | 30.0% | |
| ACCTAGGGAAAAATTAAAGT+AGG | + | chr6.2:481117-481136 | None:intergenic | 30.0% | |
| ACGCCAACTAATTAAATGAA+TGG | - | chr6.2:481261-481280 | MS.gene053083:intron | 30.0% | |
| AGAAAAATACTGTGTAACCT+AGG | + | chr6.2:481133-481152 | None:intergenic | 30.0% | |
| AGGAAAACATGGATAAACTA+GGG | - | chr6.2:479646-479665 | MS.gene053083:intron | 30.0% | |
| AGTTGCATCACATGATTAAT+TGG | + | chr6.2:479600-479619 | None:intergenic | 30.0% | |
| ATATTGTACAGGTCAATGTT+TGG | - | chr6.2:481334-481353 | MS.gene053083:intron | 30.0% | |
| ATCCTTGTTAATGTACTTGA+GGG | - | chr6.2:478688-478707 | MS.gene053083:intron | 30.0% | |
| ATGAATGTAATCACATGTGT+AGG | + | chr6.2:478011-478030 | None:intergenic | 30.0% | |
| ATTATGAAATGTGGTCCTTA+AGG | + | chr6.2:480956-480975 | None:intergenic | 30.0% | |
| CATTAAAAACCTTTATGTCG+CGG | - | chr6.2:479031-479050 | MS.gene053083:intron | 30.0% | |
| CGCCAACTAATTAAATGAAT+GGG | - | chr6.2:481262-481281 | MS.gene053083:intron | 30.0% | |
| CTGGCATCTAATATAAAACA+AGG | - | chr6.2:480743-480762 | MS.gene053083:intron | 30.0% | |
| CTTGAGATGATTATGAAATG+TGG | + | chr6.2:480965-480984 | None:intergenic | 30.0% | |
| GAAAAATACTGTGTAACCTA+GGG | + | chr6.2:481132-481151 | None:intergenic | 30.0% | |
| GACCTTAAAAAGATGTAACA+TGG | + | chr6.2:479102-479121 | None:intergenic | 30.0% | |
| GCATGGAATTTATATACCAA+TGG | - | chr6.2:479668-479687 | MS.gene053083:CDS | 30.0% | |
| TAGAACATCGTATTCAACAA+GGG | - | chr6.2:480719-480738 | MS.gene053083:intron | 30.0% | |
| TAGCCCAAAATATCACTTTA+TGG | + | chr6.2:480057-480076 | None:intergenic | 30.0% | |
| TATCACTTCTAATAAGAGCA+CGG | - | chr6.2:480075-480094 | MS.gene053083:intron | 30.0% | |
| TATGCTTTGCAAAATCCTTA+AGG | - | chr6.2:480938-480957 | MS.gene053083:intron | 30.0% | |
| TCCGTTTCATTTAAACGATA+AGG | + | chr6.2:481547-481566 | None:intergenic | 30.0% | |
| TCTGTATCATTGCATATAGT+TGG | - | chr6.2:480336-480355 | MS.gene053083:intron | 30.0% | |
| TGTGAACATAAAAATGGTAG+AGG | - | chr6.2:481375-481394 | MS.gene053083:intron | 30.0% | |
| TGTGTATTCATGAATCATGT+TGG | + | chr6.2:480661-480680 | None:intergenic | 30.0% | |
| TTAGAACATCGTATTCAACA+AGG | - | chr6.2:480718-480737 | MS.gene053083:intron | 30.0% | |
| TTAGGGTTAAGTCTATATGT+TGG | + | chr6.2:480494-480513 | None:intergenic | 30.0% | |
| TTATTTAGCAAGTACCCTTA+TGG | - | chr6.2:479169-479188 | MS.gene053083:intron | 30.0% | |
| TTCATAATCATCTCAAGCTA+AGG | - | chr6.2:480968-480987 | MS.gene053083:CDS | 30.0% | |
| TTCCATTCAACACAAGAAAA+AGG | + | chr6.2:478608-478627 | None:intergenic | 30.0% | |
| ! | AGATGATAGCTCTTTTATTC+GGG | + | chr6.2:481074-481093 | None:intergenic | 30.0% |
| ! | CAGTTCGGTTTTTATAACAT+TGG | - | chr6.2:478929-478948 | MS.gene053083:CDS | 30.0% |
| ! | GAGATGATAGCTCTTTTATT+CGG | + | chr6.2:481075-481094 | None:intergenic | 30.0% |
| ! | GCACTATTGTAAAAGGTATA+AGG | + | chr6.2:479810-479829 | None:intergenic | 30.0% |
| ! | GCTTTTATAGAACTTCAACA+AGG | - | chr6.2:479626-479645 | MS.gene053083:intron | 30.0% |
| ! | GTAGGTTATGAGAGTATATT+AGG | + | chr6.2:481099-481118 | None:intergenic | 30.0% |
| ! | TACCTTTTTCTTGTGTTGAA+TGG | - | chr6.2:478603-478622 | MS.gene053083:intron | 30.0% |
| ! | TAGTAGACTTGCTTAGATTA+GGG | + | chr6.2:480511-480530 | None:intergenic | 30.0% |
| ! | TGGTGATGTGAACATAAAAA+TGG | - | chr6.2:481369-481388 | MS.gene053083:intron | 30.0% |
| ! | TTAGTAGACTTGCTTAGATT+AGG | + | chr6.2:480512-480531 | None:intergenic | 30.0% |
| ! | TTGAATTTTGTGTTTCAGAG+TGG | - | chr6.2:479336-479355 | MS.gene053083:intron | 30.0% |
| !! | AAAATTTTGAAAGGGACATG+AGG | - | chr6.2:480833-480852 | MS.gene053083:intron | 30.0% |
| !! | ACCTACTTTAATTTTTCCCT+AGG | - | chr6.2:481113-481132 | MS.gene053083:intron | 30.0% |
| !! | TGTTCTAAACTTTTAAGAGC+CGG | + | chr6.2:480706-480725 | None:intergenic | 30.0% |
| !!! | TTTTTGGAACCTTTATGTCA+CGG | - | chr6.2:479076-479095 | MS.gene053083:intron | 30.0% |
| AACCGAACTGATAATCAAAC+TGG | + | chr6.2:478919-478938 | None:intergenic | 35.0% | |
| AAGTTGACAAGATCATGAGT+AGG | + | chr6.2:477760-477779 | None:intergenic | 35.0% | |
| AATGCTGAAGGTTATTATGG+AGG | - | chr6.2:478108-478127 | MS.gene053083:intron | 35.0% | |
| AGAAACAGAACATGCAAGTT+AGG | + | chr6.2:479845-479864 | None:intergenic | 35.0% | |
| ATCATAGGAGAGAGTGAAAT+TGG | + | chr6.2:478211-478230 | None:intergenic | 35.0% | |
| ATTGCCAAAAAAACCGAATC+AGG | + | chr6.2:478841-478860 | None:intergenic | 35.0% | |
| CAAAGTTAGGCATCTAATCA+AGG | - | chr6.2:479416-479435 | MS.gene053083:intron | 35.0% | |
| CACCAGTTTGATTATCAGTT+CGG | - | chr6.2:478914-478933 | MS.gene053083:CDS | 35.0% | |
| CATAGATAAGGTATAGAGGT+GGG | + | chr6.2:479707-479726 | None:intergenic | 35.0% | |
| CATCCTTGTTAATGTACTTG+AGG | - | chr6.2:478687-478706 | MS.gene053083:intron | 35.0% | |
| CTTAACGGTTGCAAAGAAAT+TGG | + | chr6.2:477701-477720 | None:intergenic | 35.0% | |
| CTTCGATCAGATATGTATGT+CGG | + | chr6.2:477856-477875 | None:intergenic | 35.0% | |
| CTTCTCTTCCAATCATCAAT+TGG | - | chr6.2:477777-477796 | MS.gene053083:CDS | 35.0% | |
| GAAATCAAGAAAGCAGTTCA+AGG | + | chr6.2:479394-479413 | None:intergenic | 35.0% | |
| GAACTTCAACAAGGAAAACA+TGG | - | chr6.2:479635-479654 | MS.gene053083:intron | 35.0% | |
| GCATCAAAATTTACAGGTAG+CGG | - | chr6.2:481418-481437 | MS.gene053083:CDS | 35.0% | |
| GTTATTCAGCATGTTTGAGA+TGG | - | chr6.2:480022-480041 | MS.gene053083:intron | 35.0% | |
| GTTGTGATCCTTGATATTGT+GGG | - | chr6.2:478951-478970 | MS.gene053083:CDS | 35.0% | |
| TAAAAATGGTAGAGGTTGCT+AGG | - | chr6.2:481383-481402 | MS.gene053083:intron | 35.0% | |
| TACCCTCAAGTACATTAACA+AGG | + | chr6.2:478693-478712 | None:intergenic | 35.0% | |
| TACGATTTCCCACAATATCA+AGG | + | chr6.2:478962-478981 | None:intergenic | 35.0% | |
| TATGCAAGAGTTGGATTGTT+AGG | - | chr6.2:477628-477647 | MS.gene053083:CDS | 35.0% | |
| TCATTGCATATAGTTGGACT+TGG | - | chr6.2:480342-480361 | MS.gene053083:intron | 35.0% | |
| TGCAGGTTCATAGTAAAGTA+CGG | - | chr6.2:480155-480174 | MS.gene053083:intron | 35.0% | |
| TGCCTATTTGTTTGGACAAA+AGG | + | chr6.2:481030-481049 | None:intergenic | 35.0% | |
| TGTCCAAACAAATAGGCAAA+TGG | - | chr6.2:481032-481051 | MS.gene053083:CDS | 35.0% | |
| TGTGAAATCAATGCTTGAAG+TGG | - | chr6.2:480207-480226 | MS.gene053083:intron | 35.0% | |
| ! | ATCACTTCTAATAAGAGCAC+GGG | - | chr6.2:480076-480095 | MS.gene053083:intron | 35.0% |
| ! | ATGTTGGAACTTTTACCACT+GGG | + | chr6.2:480645-480664 | None:intergenic | 35.0% |
| ! | CACCTTTTGTCCAAACAAAT+AGG | - | chr6.2:481025-481044 | MS.gene053083:CDS | 35.0% |
| ! | CATGTTGTGTTATGTTTTGC+AGG | - | chr6.2:478074-478093 | MS.gene053083:intron | 35.0% |
| ! | GAGAATTACCAGATTAGTTG+TGG | + | chr6.2:480995-481014 | None:intergenic | 35.0% |
| ! | GAGACATACCAATTGATGAT+TGG | + | chr6.2:477788-477807 | None:intergenic | 35.0% |
| ! | GGCCATGTTACATCTTTTTA+AGG | - | chr6.2:479097-479116 | MS.gene053083:intron | 35.0% |
| ! | GTTGATAGGATAAATGCTGA+AGG | - | chr6.2:478096-478115 | MS.gene053083:intron | 35.0% |
| ! | GTTTTGCTGAGGAAATAGTA+TGG | - | chr6.2:479305-479324 | MS.gene053083:intron | 35.0% |
| !! | AGGTTGAATGATGAGTTGAT+TGG | + | chr6.2:477734-477753 | None:intergenic | 35.0% |
| !! | CGTAGTTTAGAGCTTTTAGT+GGG | + | chr6.2:480470-480489 | None:intergenic | 35.0% |
| !! | GCTACCTGTAAATTTTGATG+CGG | + | chr6.2:481419-481438 | None:intergenic | 35.0% |
| !! | GTAGTTTAGAGCTTTTAGTG+GGG | + | chr6.2:480469-480488 | None:intergenic | 35.0% |
| !! | TCGTAGTTTAGAGCTTTTAG+TGG | + | chr6.2:480471-480490 | None:intergenic | 35.0% |
| !! | TGAATGATGAGTTGATTGGA+AGG | + | chr6.2:477730-477749 | None:intergenic | 35.0% |
| !! | TTATGGTGGACTAGTTTACA+TGG | - | chr6.2:479521-479540 | MS.gene053083:CDS | 35.0% |
| !!! | GGTTTTAAAACACTGATCAC+CGG | + | chr6.2:478776-478795 | None:intergenic | 35.0% |
| !!! | GTTATGTTTTGCAGGTTGAT+AGG | - | chr6.2:478082-478101 | MS.gene053083:intron | 35.0% |
| !!! | TTCTATCTGTTGTTTTGCTG+AGG | - | chr6.2:479294-479313 | MS.gene053083:intron | 35.0% |
| AAAACAGCAATTACCTTCGC+AGG | + | chr6.2:480315-480334 | None:intergenic | 40.0% | |
| AAAGAACTGGGAATAGTTGC+AGG | - | chr6.2:479474-479493 | MS.gene053083:CDS | 40.0% | |
| AACATGGATAAACTAGGGCA+TGG | - | chr6.2:479651-479670 | MS.gene053083:intron | 40.0% | |
| AACCTTGAATCGTCCTGATT+CGG | - | chr6.2:478825-478844 | MS.gene053083:intron | 40.0% | |
| ACAAGATCATGAGTAGGATG+AGG | + | chr6.2:477754-477773 | None:intergenic | 40.0% | |
| ACCTTCGCAGGTCAAAATTT+CGG | + | chr6.2:480303-480322 | None:intergenic | 40.0% | |
| ACGAGGGATGTTAGTATCAT+AGG | + | chr6.2:478226-478245 | None:intergenic | 40.0% | |
| ACGGGAAAGTTCGCTTAATT+TGG | - | chr6.2:480094-480113 | MS.gene053083:intron | 40.0% | |
| AGATGGTTATATACCTGACG+AGG | + | chr6.2:478243-478262 | None:intergenic | 40.0% | |
| AGTTAGGCATCTAATCAAGG+TGG | - | chr6.2:479419-479438 | MS.gene053083:intron | 40.0% | |
| ATCAAACTGGACAGTTCAAC+CGG | - | chr6.2:478754-478773 | MS.gene053083:intron | 40.0% | |
| ATCAAACTGGTGAGACCTAT+AGG | + | chr6.2:478906-478925 | None:intergenic | 40.0% | |
| ATCTAATCAAGGTGGAGGTT+AGG | - | chr6.2:479427-479446 | MS.gene053083:intron | 40.0% | |
| ATGTATTGCGAGAGAAGGAA+AGG | - | chr6.2:480231-480250 | MS.gene053083:intron | 40.0% | |
| ATGTTTGGAGATGATGCACT+TGG | - | chr6.2:481349-481368 | MS.gene053083:intron | 40.0% | |
| ATTGGAAGGAACGAGCTTAA+CGG | + | chr6.2:477716-477735 | None:intergenic | 40.0% | |
| CACAAAGCATATGCAAGAGT+TGG | - | chr6.2:477619-477638 | MS.gene053083:CDS | 40.0% | |
| CGACATACATATCTGATCGA+AGG | - | chr6.2:477854-477873 | MS.gene053083:intron | 40.0% | |
| CGATAAGGAAAAGGTTCAAG+AGG | + | chr6.2:481532-481551 | None:intergenic | 40.0% | |
| GACTGATATATCTGATCGAC+TGG | - | chr6.2:477954-477973 | MS.gene053083:intron | 40.0% | |
| GAGGATGAATGTCATAAAGC+AGG | - | chr6.2:481493-481512 | MS.gene053083:CDS | 40.0% | |
| GATGGTTATATACCTGACGA+GGG | + | chr6.2:478242-478261 | None:intergenic | 40.0% | |
| GCATAGATAAGGTATAGAGG+TGG | + | chr6.2:479708-479727 | None:intergenic | 40.0% | |
| GCTGCATAGATAAGGTATAG+AGG | + | chr6.2:479711-479730 | None:intergenic | 40.0% | |
| GGACCATTTGCCTATTTGTT+TGG | + | chr6.2:481038-481057 | None:intergenic | 40.0% | |
| GGTTGTGATCCTTGATATTG+TGG | - | chr6.2:478950-478969 | MS.gene053083:CDS | 40.0% | |
| GTAGTCACATAGAATCTCAG+AGG | - | chr6.2:480855-480874 | MS.gene053083:intron | 40.0% | |
| GTTCATGAGAGATGCAAGTT+TGG | + | chr6.2:480281-480300 | None:intergenic | 40.0% | |
| TAGGATTCGCTGCATAGATA+AGG | + | chr6.2:479719-479738 | None:intergenic | 40.0% | |
| TAGTTGCAGGTCTTCAAGAT+CGG | - | chr6.2:479487-479506 | MS.gene053083:CDS | 40.0% | |
| TCAAACTGGTGAGACCTATA+GGG | + | chr6.2:478905-478924 | None:intergenic | 40.0% | |
| TGGTTCAACTCCCTTAAACA+AGG | + | chr6.2:478880-478899 | None:intergenic | 40.0% | |
| TGTTACACTGATCCATGTGT+AGG | + | chr6.2:477932-477951 | None:intergenic | 40.0% | |
| TTCATAGTAAAGTACGGCAG+AGG | - | chr6.2:480161-480180 | MS.gene053083:intron | 40.0% | |
| TTCTCAAGCAAAGCTTCTTG+AGG | - | chr6.2:481474-481493 | MS.gene053083:CDS | 40.0% | |
| TTGCCGTAATATACATCGCT+TGG | + | chr6.2:477658-477677 | None:intergenic | 40.0% | |
| ! | AGCTCTTTTATTCGGGTGTT+AGG | + | chr6.2:481067-481086 | None:intergenic | 40.0% |
| ! | CATGTTGGAACTTTTACCAC+TGG | + | chr6.2:480646-480665 | None:intergenic | 40.0% |
| ! | GTGGTTTCGTCCTTGTTTAA+GGG | - | chr6.2:478867-478886 | MS.gene053083:intron | 40.0% |
| ! | TATCTGATCGAAGGTGTATC+TGG | - | chr6.2:477863-477882 | MS.gene053083:intron | 40.0% |
| ! | TCAAAATTTACAGGTAGCGG+AGG | - | chr6.2:481421-481440 | MS.gene053083:CDS | 40.0% |
| ! | TGTGGTTTCGTCCTTGTTTA+AGG | - | chr6.2:478866-478885 | MS.gene053083:intron | 40.0% |
| ! | TGTGTTTCAGAGTGGACTTT+CGG | - | chr6.2:479344-479363 | MS.gene053083:intron | 40.0% |
| ! | TGTTGGAACTTTTACCACTG+GGG | + | chr6.2:480644-480663 | None:intergenic | 40.0% |
| !! | GAGGGTATGATTTTAAGTCC+TGG | - | chr6.2:478706-478725 | MS.gene053083:intron | 40.0% |
| !! | TAAACTTTTAAGAGCCGGCT+GGG | + | chr6.2:480701-480720 | None:intergenic | 40.0% |
| !!! | TCGTCCTGATTCGGTTTTTT+TGG | - | chr6.2:478834-478853 | MS.gene053083:intron | 40.0% |
| AACCGAATCAGGACGATTCA+AGG | + | chr6.2:478830-478849 | None:intergenic | 45.0% | |
| AATGGTAGAGGTTGCTAGGA+AGG | - | chr6.2:481387-481406 | MS.gene053083:intron | 45.0% | |
| AGTTGCAGGTCTTCAAGATC+GGG | - | chr6.2:479488-479507 | MS.gene053083:CDS | 45.0% | |
| ATAGTAAAGTACGGCAGAGG+TGG | - | chr6.2:480164-480183 | MS.gene053083:intron | 45.0% | |
| CAGCGAATCCTAGTGATTCT+GGG | - | chr6.2:479727-479746 | MS.gene053083:CDS | 45.0% | |
| CATCGTATTCAACAAGGGTC+TGG | - | chr6.2:480724-480743 | MS.gene053083:intron | 45.0% | |
| CTAACCTTCCCAGAATCACT+AGG | + | chr6.2:479738-479757 | None:intergenic | 45.0% | |
| CTGGTATCTGACACATGTGT+AGG | - | chr6.2:477882-477901 | MS.gene053083:intron | 45.0% | |
| CTTGCAGCAGAGAAAGAACT+GGG | - | chr6.2:479462-479481 | MS.gene053083:CDS | 45.0% | |
| CTTTCTCTGCTGCAAGGATA+AGG | + | chr6.2:479458-479477 | None:intergenic | 45.0% | |
| GCTAAGGACCACAACTAATC+TGG | - | chr6.2:480984-481003 | MS.gene053083:CDS | 45.0% | |
| GGAAGGTTAGTGTCATCGAA+TGG | - | chr6.2:479748-479767 | MS.gene053083:CDS | 45.0% | |
| GGAGCCGCATCAAAATTTAC+AGG | - | chr6.2:481412-481431 | MS.gene053083:CDS | 45.0% | |
| GGAGTTGAACCATACCCTAT+AGG | - | chr6.2:478888-478907 | MS.gene053083:CDS | 45.0% | |
| GGGAGTAGACTCAAATCCAT+TGG | + | chr6.2:479687-479706 | None:intergenic | 45.0% | |
| GTAACATGGCCGTGACATAA+AGG | + | chr6.2:479088-479107 | None:intergenic | 45.0% | |
| GTTGTTGCATATTGTCCCGA+GGG | - | chr6.2:481448-481467 | MS.gene053083:CDS | 45.0% | |
| TAACCAGTACAGTGCCTTGA+AGG | - | chr6.2:479208-479227 | MS.gene053083:intron | 45.0% | |
| TAATTTGGGCCGCGACATAA+AGG | + | chr6.2:479043-479062 | None:intergenic | 45.0% | |
| TAGGCATCTAATCAAGGTGG+AGG | - | chr6.2:479422-479441 | MS.gene053083:intron | 45.0% | |
| TCCGACTAAGAACACCTTCA+AGG | + | chr6.2:479225-479244 | None:intergenic | 45.0% | |
| TCTGACATGACACCTACACA+TGG | - | chr6.2:477917-477936 | MS.gene053083:intron | 45.0% | |
| TCTGCTGCAAGGATAAGGTT+AGG | + | chr6.2:479453-479472 | None:intergenic | 45.0% | |
| TGATACTAACATCCCTCGTC+AGG | - | chr6.2:478227-478246 | MS.gene053083:intron | 45.0% | |
| TGGAGGAGTTCGATTGCTTA+TGG | - | chr6.2:478125-478144 | MS.gene053083:intron | 45.0% | |
| TGTGCTATGAGGCTAAGAAG+AGG | - | chr6.2:479957-479976 | MS.gene053083:intron | 45.0% | |
| TGTTGTTGCATATTGTCCCG+AGG | - | chr6.2:481447-481466 | MS.gene053083:CDS | 45.0% | |
| TTGATAGGTAGTCCTTCCCT+TGG | - | chr6.2:480434-480453 | MS.gene053083:intron | 45.0% | |
| TTGCTGTAGCATGTGCTATG+AGG | - | chr6.2:479946-479965 | MS.gene053083:intron | 45.0% | |
| TTGTTGCATATTGTCCCGAG+GGG | - | chr6.2:481449-481468 | MS.gene053083:CDS | 45.0% | |
| ! | GAATCCTAGTGATTCTGGGA+AGG | - | chr6.2:479731-479750 | MS.gene053083:CDS | 45.0% |
| ! | GTGTTTCAGAGTGGACTTTC+GGG | - | chr6.2:479345-479364 | MS.gene053083:intron | 45.0% |
| ! | TAGTCCTTCCCTTGGTTCTT+TGG | - | chr6.2:480442-480461 | MS.gene053083:intron | 45.0% |
| !! | AAACTTTTAAGAGCCGGCTG+GGG | + | chr6.2:480700-480719 | None:intergenic | 45.0% |
| !! | ACCGAAATTTTGACCTGCGA+AGG | - | chr6.2:480299-480318 | MS.gene053083:intron | 45.0% |
| !! | CTAAACTTTTAAGAGCCGGC+TGG | + | chr6.2:480702-480721 | None:intergenic | 45.0% |
| !! | GCCTTGAAGGTGTTCTTAGT+CGG | - | chr6.2:479221-479240 | MS.gene053083:intron | 45.0% |
| !! | TATTCGGGTGTTAGGTTGAG+AGG | + | chr6.2:481059-481078 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTAAGA+AGG | - | chr6.2:481185-481204 | MS.gene053083:intron | 5.0% |
| ACACTGATCACGACACAACC+AGG | + | chr6.2:478727-478746 | None:intergenic | 50.0% | |
| AGCATAAGTTCTTCCCCAGC+CGG | - | chr6.2:480684-480703 | MS.gene053083:intron | 50.0% | |
| AGTGGGGACCAAAGAACCAA+GGG | + | chr6.2:480453-480472 | None:intergenic | 50.0% | |
| CCAGTTCTTTCTCTGCTGCA+AGG | + | chr6.2:479464-479483 | None:intergenic | 50.0% | |
| CCTTGCAGCAGAGAAAGAAC+TGG | - | chr6.2:479461-479480 | MS.gene053083:CDS | 50.0% | |
| CTGGTGAGACCTATAGGGTA+TGG | + | chr6.2:478900-478919 | None:intergenic | 50.0% | |
| CTTTGCTTGAGAAGTCCCCT+CGG | + | chr6.2:481467-481486 | None:intergenic | 50.0% | |
| GACTGGTATCTGACACGTGT+AGG | - | chr6.2:477971-477990 | MS.gene053083:intron | 50.0% | |
| GATGTGAGTGACGTCAATCG+CGG | - | chr6.2:478994-479013 | MS.gene053083:CDS | 50.0% | |
| GCAGCGAATCCTAGTGATTC+TGG | - | chr6.2:479726-479745 | MS.gene053083:CDS | 50.0% | |
| GGAGTTGAGCTCAGTATCGT+CGG | - | chr6.2:480573-480592 | MS.gene053083:intron | 50.0% | |
| GTAGAGGTTGCTAGGAAGGT+TGG | - | chr6.2:481391-481410 | MS.gene053083:intron | 50.0% | |
| GTGGCATGTATTGCGAGAGA+AGG | - | chr6.2:480226-480245 | MS.gene053083:intron | 50.0% | |
| TAGTGGGGACCAAAGAACCA+AGG | + | chr6.2:480454-480473 | None:intergenic | 50.0% | |
| TCTGCGTGGCATCTTTCTTG+TGG | + | chr6.2:480775-480794 | None:intergenic | 50.0% | |
| TTTGCTTGAGAAGTCCCCTC+GGG | + | chr6.2:481466-481485 | None:intergenic | 50.0% | |
| ! | CATGCTGGCTGTCTAACTTC+CGG | - | chr6.2:480802-480821 | MS.gene053083:intron | 50.0% |
| !! | ACACCTTCAAGGCACTGTAC+TGG | + | chr6.2:479214-479233 | None:intergenic | 50.0% |
| !! | AGTGGACTTTCGGGTTCTAG+TGG | - | chr6.2:479354-479373 | MS.gene053083:intron | 50.0% |
| !! | GTGGACTTTCGGGTTCTAGT+GGG | - | chr6.2:479355-479374 | MS.gene053083:intron | 50.0% |
| ACACGTGTAGGCGTCTGACA+TGG | - | chr6.2:477983-478002 | MS.gene053083:intron | 55.0% | |
| CCACTGGGGTTTAGCACAAG+TGG | + | chr6.2:480630-480649 | None:intergenic | 55.0% | |
| CCACTTGTGCTAAACCCCAG+TGG | - | chr6.2:480627-480646 | MS.gene053083:intron | 55.0% | |
| CGGAAGTTAGACAGCCAGCA+TGG | + | chr6.2:480804-480823 | None:intergenic | 55.0% | |
| GATCGGGTGGCGCAAGTTTA+TGG | - | chr6.2:479504-479523 | MS.gene053083:CDS | 55.0% | |
| GGGACCAAAGAACCAAGGGA+AGG | + | chr6.2:480449-480468 | None:intergenic | 55.0% | |
| TCGCGGCCCAAATTAGAGTC+AGG | - | chr6.2:479048-479067 | MS.gene053083:intron | 55.0% | |
| TGCAGGTCTTCAAGATCGGG+TGG | - | chr6.2:479491-479510 | MS.gene053083:CDS | 55.0% | |
| CACGCAGACAAGCTCCATGC+TGG | - | chr6.2:480787-480806 | MS.gene053083:intron | 60.0% | |
| CAGCATGGAGCTTGTCTGCG+TGG | + | chr6.2:480789-480808 | None:intergenic | 60.0% | |
| CGGGTGGCGCAAGTTTATGG+TGG | - | chr6.2:479507-479526 | MS.gene053083:CDS | 60.0% | |
| GTACGGCAGAGGTGGCTTGA+TGG | - | chr6.2:480172-480191 | MS.gene053083:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 477604 | 481597 | 477604 | ID=MS.gene053083 |
| chr6.2 | mRNA | 477604 | 481597 | 477604 | ID=MS.gene053083.t1;Parent=MS.gene053083 |
| chr6.2 | exon | 481403 | 481597 | 481403 | ID=MS.gene053083.t1.exon1;Parent=MS.gene053083.t1 |
| chr6.2 | CDS | 481403 | 481597 | 481403 | ID=cds.MS.gene053083.t1;Parent=MS.gene053083.t1 |
| chr6.2 | exon | 480953 | 481105 | 480953 | ID=MS.gene053083.t1.exon2;Parent=MS.gene053083.t1 |
| chr6.2 | CDS | 480953 | 481105 | 480953 | ID=cds.MS.gene053083.t1;Parent=MS.gene053083.t1 |
| chr6.2 | exon | 479659 | 479847 | 479659 | ID=MS.gene053083.t1.exon3;Parent=MS.gene053083.t1 |
| chr6.2 | CDS | 479659 | 479847 | 479659 | ID=cds.MS.gene053083.t1;Parent=MS.gene053083.t1 |
| chr6.2 | exon | 479449 | 479565 | 479449 | ID=MS.gene053083.t1.exon4;Parent=MS.gene053083.t1 |
| chr6.2 | CDS | 479449 | 479565 | 479449 | ID=cds.MS.gene053083.t1;Parent=MS.gene053083.t1 |
| chr6.2 | exon | 478881 | 479041 | 478881 | ID=MS.gene053083.t1.exon5;Parent=MS.gene053083.t1 |
| chr6.2 | CDS | 478881 | 479041 | 478881 | ID=cds.MS.gene053083.t1;Parent=MS.gene053083.t1 |
| chr6.2 | exon | 477604 | 477856 | 477604 | ID=MS.gene053083.t1.exon6;Parent=MS.gene053083.t1 |
| chr6.2 | CDS | 477604 | 477856 | 477604 | ID=cds.MS.gene053083.t1;Parent=MS.gene053083.t1 |
| Gene Sequence |
| Protein sequence |
