Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94274.t1 | XP_003623204.1 | 97.3 | 221 | 6 | 0 | 1 | 221 | 1 | 221 | 7.80E-119 | 436.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94274.t1 | P32110 | 66.4 | 223 | 70 | 2 | 1 | 218 | 1 | 223 | 3.7e-77 | 289.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94274.t1 | G7L6H8 | 97.3 | 221 | 6 | 0 | 1 | 221 | 1 | 221 | 5.6e-119 | 436.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051852 | MS.gene94274 | 0.820125 | 8.09E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene94274 | 0.816758 | 4.69E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94274.t1 | MTR_7g065680 | 97.285 | 221 | 6 | 0 | 1 | 221 | 1 | 221 | 1.48e-158 | 437 |
| MS.gene94274.t1 | MTR_7g065630 | 83.258 | 221 | 37 | 0 | 1 | 221 | 19 | 239 | 9.97e-135 | 378 |
| MS.gene94274.t1 | MTR_7g065710 | 81.905 | 210 | 35 | 1 | 1 | 210 | 1 | 207 | 3.08e-126 | 356 |
| MS.gene94274.t1 | MTR_7g065700 | 86.667 | 210 | 28 | 0 | 1 | 210 | 1 | 210 | 1.17e-124 | 352 |
| MS.gene94274.t1 | MTR_7g065590 | 64.865 | 222 | 74 | 1 | 1 | 218 | 1 | 222 | 1.82e-101 | 293 |
| MS.gene94274.t1 | MTR_7g065660 | 65.333 | 225 | 74 | 1 | 1 | 221 | 1 | 225 | 5.22e-99 | 287 |
| MS.gene94274.t1 | MTR_7g065600 | 64.414 | 222 | 75 | 1 | 1 | 218 | 1 | 222 | 5.83e-97 | 282 |
| MS.gene94274.t1 | MTR_7g065230 | 66.972 | 218 | 71 | 1 | 1 | 218 | 1 | 217 | 9.69e-97 | 281 |
| MS.gene94274.t1 | MTR_7g065720 | 65.158 | 221 | 72 | 2 | 1 | 216 | 1 | 221 | 1.61e-96 | 281 |
| MS.gene94274.t1 | MTR_7g065290 | 63.470 | 219 | 76 | 1 | 1 | 215 | 1 | 219 | 7.92e-95 | 276 |
| MS.gene94274.t1 | MTR_7g065265 | 64.815 | 216 | 72 | 1 | 1 | 212 | 1 | 216 | 6.00e-94 | 274 |
| MS.gene94274.t1 | MTR_7g065740 | 60.619 | 226 | 84 | 2 | 1 | 221 | 1 | 226 | 2.40e-92 | 270 |
| MS.gene94274.t1 | MTR_7g065750 | 61.062 | 226 | 83 | 2 | 1 | 221 | 1 | 226 | 1.25e-89 | 263 |
| MS.gene94274.t1 | MTR_7g065270 | 61.574 | 216 | 79 | 1 | 1 | 212 | 1 | 216 | 1.32e-89 | 263 |
| MS.gene94274.t1 | MTR_7g065640 | 59.729 | 221 | 75 | 1 | 1 | 221 | 1 | 207 | 4.17e-85 | 251 |
| MS.gene94274.t1 | MTR_4g019790 | 56.889 | 225 | 93 | 1 | 1 | 221 | 1 | 225 | 1.46e-84 | 250 |
| MS.gene94274.t1 | MTR_7g065260 | 60.987 | 223 | 82 | 2 | 1 | 218 | 8 | 230 | 1.06e-81 | 243 |
| MS.gene94274.t1 | MTR_4g019780 | 56.422 | 218 | 89 | 3 | 2 | 214 | 3 | 219 | 2.01e-80 | 239 |
| MS.gene94274.t1 | MTR_6g080440 | 46.635 | 208 | 105 | 3 | 7 | 209 | 3 | 209 | 5.13e-60 | 188 |
| MS.gene94274.t1 | MTR_8g087410 | 40.541 | 222 | 126 | 3 | 5 | 221 | 4 | 224 | 1.91e-56 | 179 |
| MS.gene94274.t1 | MTR_3g099757 | 46.606 | 221 | 112 | 3 | 5 | 220 | 3 | 222 | 3.24e-56 | 178 |
| MS.gene94274.t1 | MTR_8g087425 | 43.192 | 213 | 115 | 3 | 5 | 212 | 3 | 214 | 8.02e-53 | 169 |
| MS.gene94274.t1 | MTR_5g040430 | 41.892 | 222 | 117 | 4 | 1 | 211 | 1 | 221 | 9.62e-53 | 169 |
| MS.gene94274.t1 | MTR_1g090070 | 41.892 | 222 | 120 | 4 | 7 | 220 | 9 | 229 | 3.59e-51 | 166 |
| MS.gene94274.t1 | MTR_1g090150 | 42.273 | 220 | 118 | 4 | 6 | 218 | 2 | 219 | 3.79e-51 | 166 |
| MS.gene94274.t1 | MTR_1g090060 | 41.509 | 212 | 112 | 4 | 7 | 209 | 3 | 211 | 4.93e-49 | 160 |
| MS.gene94274.t1 | MTR_1g115195 | 43.842 | 203 | 103 | 4 | 7 | 200 | 3 | 203 | 7.49e-48 | 157 |
| MS.gene94274.t1 | MTR_1g090100 | 41.706 | 211 | 113 | 4 | 8 | 210 | 3 | 211 | 9.24e-46 | 151 |
| MS.gene94274.t1 | MTR_4g059730 | 38.967 | 213 | 120 | 4 | 6 | 210 | 3 | 213 | 2.76e-45 | 150 |
| MS.gene94274.t1 | MTR_5g037380 | 40.090 | 222 | 121 | 3 | 7 | 216 | 5 | 226 | 2.89e-45 | 150 |
| MS.gene94274.t1 | MTR_2g070130 | 42.439 | 205 | 109 | 6 | 6 | 204 | 3 | 204 | 2.19e-44 | 148 |
| MS.gene94274.t1 | MTR_2g070150 | 47.853 | 163 | 78 | 5 | 6 | 165 | 3 | 161 | 2.91e-44 | 147 |
| MS.gene94274.t1 | MTR_1g090090 | 39.048 | 210 | 118 | 4 | 7 | 208 | 3 | 210 | 1.97e-43 | 145 |
| MS.gene94274.t1 | MTR_2g070140 | 39.594 | 197 | 108 | 6 | 20 | 209 | 1 | 193 | 2.77e-42 | 142 |
| MS.gene94274.t1 | MTR_2g070210 | 38.140 | 215 | 120 | 7 | 6 | 211 | 3 | 213 | 3.44e-42 | 142 |
| MS.gene94274.t1 | MTR_3g467420 | 40.909 | 198 | 110 | 6 | 16 | 208 | 18 | 213 | 1.17e-41 | 141 |
| MS.gene94274.t1 | MTR_2g070200 | 37.900 | 219 | 127 | 6 | 6 | 217 | 3 | 219 | 1.51e-40 | 138 |
| MS.gene94274.t1 | MTR_8g056940 | 47.561 | 164 | 79 | 5 | 6 | 166 | 3 | 162 | 1.63e-40 | 138 |
| MS.gene94274.t1 | MTR_4g124130 | 44.737 | 190 | 95 | 6 | 4 | 186 | 1 | 187 | 2.52e-40 | 137 |
| MS.gene94274.t1 | MTR_8g061950 | 38.571 | 210 | 117 | 4 | 7 | 204 | 5 | 214 | 1.69e-39 | 135 |
| MS.gene94274.t1 | MTR_2g070120 | 38.235 | 204 | 119 | 5 | 6 | 204 | 3 | 204 | 4.31e-39 | 134 |
| MS.gene94274.t1 | MTR_2g070180 | 37.073 | 205 | 120 | 5 | 6 | 204 | 3 | 204 | 6.42e-39 | 134 |
| MS.gene94274.t1 | MTR_3g467430 | 39.423 | 208 | 119 | 6 | 6 | 208 | 8 | 213 | 1.26e-38 | 133 |
| MS.gene94274.t1 | MTR_2g070070 | 35.945 | 217 | 130 | 5 | 7 | 217 | 4 | 217 | 7.72e-38 | 131 |
| MS.gene94274.t1 | MTR_2g070060 | 35.577 | 208 | 125 | 5 | 7 | 208 | 4 | 208 | 2.49e-37 | 130 |
| MS.gene94274.t1 | MTR_5g076900 | 38.164 | 207 | 123 | 4 | 6 | 208 | 5 | 210 | 3.98e-36 | 127 |
| MS.gene94274.t1 | MTR_0186s0030 | 46.809 | 141 | 71 | 3 | 6 | 144 | 3 | 141 | 2.06e-34 | 120 |
| MS.gene94274.t1 | MTR_2g070110 | 37.019 | 208 | 121 | 6 | 7 | 208 | 4 | 207 | 2.15e-33 | 119 |
| MS.gene94274.t1 | MTR_2g072120 | 39.130 | 69 | 40 | 2 | 51 | 118 | 2 | 69 | 5.20e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94274.t1 | AT3G09270 | 50.679 | 221 | 101 | 5 | 5 | 218 | 4 | 223 | 1.72e-67 | 207 |
| MS.gene94274.t1 | AT2G29420 | 44.545 | 220 | 116 | 3 | 6 | 220 | 8 | 226 | 5.81e-63 | 196 |
| MS.gene94274.t1 | AT2G29450 | 44.292 | 219 | 113 | 4 | 6 | 215 | 5 | 223 | 5.62e-53 | 170 |
| MS.gene94274.t1 | AT2G29480 | 45.614 | 228 | 106 | 7 | 1 | 215 | 1 | 223 | 1.20e-52 | 169 |
| MS.gene94274.t1 | AT2G29490 | 43.304 | 224 | 120 | 4 | 1 | 218 | 1 | 223 | 2.21e-52 | 169 |
| MS.gene94274.t1 | AT2G29460 | 44.907 | 216 | 112 | 4 | 1 | 210 | 1 | 215 | 3.19e-52 | 168 |
| MS.gene94274.t1 | AT2G29470 | 41.333 | 225 | 124 | 5 | 1 | 218 | 1 | 224 | 3.65e-51 | 166 |
| MS.gene94274.t1 | AT2G29440 | 40.455 | 220 | 124 | 4 | 5 | 218 | 4 | 222 | 1.75e-47 | 156 |
| MS.gene94274.t1 | AT1G59700 | 43.913 | 230 | 114 | 7 | 6 | 220 | 5 | 234 | 3.87e-46 | 153 |
| MS.gene94274.t1 | AT1G59670 | 41.704 | 223 | 115 | 6 | 6 | 213 | 5 | 227 | 5.09e-46 | 152 |
| MS.gene94274.t1 | AT1G10370 | 40.758 | 211 | 112 | 4 | 1 | 200 | 1 | 209 | 1.69e-45 | 151 |
| MS.gene94274.t1 | AT1G27140 | 38.667 | 225 | 121 | 5 | 3 | 212 | 2 | 224 | 5.04e-44 | 148 |
| MS.gene94274.t1 | AT1G69930 | 38.991 | 218 | 121 | 5 | 5 | 210 | 10 | 227 | 8.01e-44 | 147 |
| MS.gene94274.t1 | AT1G78340 | 48.214 | 168 | 84 | 3 | 6 | 171 | 3 | 169 | 1.37e-43 | 146 |
| MS.gene94274.t1 | AT1G10360 | 38.350 | 206 | 116 | 4 | 6 | 200 | 4 | 209 | 9.91e-43 | 144 |
| MS.gene94274.t1 | AT1G27130 | 37.838 | 222 | 126 | 5 | 3 | 212 | 2 | 223 | 3.28e-42 | 142 |
| MS.gene94274.t1 | AT1G78320 | 38.140 | 215 | 124 | 5 | 4 | 212 | 1 | 212 | 3.82e-42 | 142 |
| MS.gene94274.t1 | AT1G78370 | 39.901 | 203 | 117 | 5 | 10 | 208 | 7 | 208 | 7.00e-42 | 141 |
| MS.gene94274.t1 | AT1G17170 | 39.352 | 216 | 125 | 5 | 6 | 217 | 3 | 216 | 7.52e-42 | 141 |
| MS.gene94274.t1 | AT1G78380 | 40.196 | 204 | 113 | 5 | 7 | 204 | 4 | 204 | 4.94e-41 | 139 |
| MS.gene94274.t1 | AT1G17180 | 40.394 | 203 | 116 | 5 | 6 | 204 | 3 | 204 | 1.97e-40 | 138 |
| MS.gene94274.t1 | AT1G53680 | 36.967 | 211 | 128 | 5 | 1 | 206 | 1 | 211 | 7.14e-39 | 134 |
| MS.gene94274.t1 | AT5G62480 | 40.183 | 219 | 112 | 7 | 4 | 204 | 1 | 218 | 3.67e-38 | 132 |
| MS.gene94274.t1 | AT1G78360 | 39.070 | 215 | 118 | 7 | 1 | 208 | 1 | 209 | 2.00e-37 | 130 |
| MS.gene94274.t1 | AT1G69920 | 37.799 | 209 | 118 | 5 | 5 | 201 | 32 | 240 | 4.14e-37 | 130 |
| MS.gene94274.t1 | AT1G17190 | 38.710 | 186 | 109 | 5 | 5 | 186 | 3 | 187 | 7.73e-36 | 126 |
| MS.gene94274.t1 | AT3G43800 | 38.235 | 204 | 117 | 7 | 5 | 200 | 3 | 205 | 3.43e-35 | 124 |
| MS.gene94274.t1 | AT1G74590 | 35.961 | 203 | 117 | 5 | 7 | 198 | 7 | 207 | 2.86e-31 | 114 |
| MS.gene94274.t1 | AT1G78320 | 32.039 | 206 | 106 | 5 | 4 | 204 | 1 | 177 | 4.67e-26 | 100 |
| MS.gene94274.t1 | AT5G62480 | 32.569 | 218 | 104 | 7 | 4 | 204 | 1 | 192 | 2.80e-21 | 88.2 |
| MS.gene94274.t1 | AT5G62480 | 32.569 | 218 | 103 | 7 | 4 | 204 | 1 | 191 | 3.28e-21 | 88.2 |
Find 37 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGATCATTAGGCAAAAT+AGG | 0.209722 | 7.3:+40519357 | None:intergenic |
| TCAAATACAATCCAGTTTAT+AGG | 0.216244 | 7.3:-40519467 | MS.gene94274:CDS |
| ACTGTTTCTCTGCTACTTCT+TGG | 0.238294 | 7.3:+40518064 | None:intergenic |
| CCTTCAAAGGAACAACAATT+TGG | 0.250973 | 7.3:-40517961 | MS.gene94274:CDS |
| TCTGCTACTTCTTGGAATAA+AGG | 0.258191 | 7.3:+40518072 | None:intergenic |
| GTTCCTGTTCTTGTTCATAA+TGG | 0.264740 | 7.3:-40519441 | MS.gene94274:CDS |
| GAGCTGAAGGACAAGTTCTT+TGG | 0.294063 | 7.3:-40518138 | MS.gene94274:CDS |
| AAAGAGCCTTGGATCGGTTT+TGG | 0.294414 | 7.3:-40519332 | MS.gene94274:CDS |
| TGATGAAGAAGTTCAGCTTT+TGG | 0.304952 | 7.3:-40519598 | MS.gene94274:CDS |
| CTGCTACTTCTTGGAATAAA+GGG | 0.326236 | 7.3:+40518073 | None:intergenic |
| CCAAATTGTTGTTCCTTTGA+AGG | 0.337895 | 7.3:+40517961 | None:intergenic |
| TTCCTGTTCTTGTTCATAAT+GGG | 0.343118 | 7.3:-40519440 | MS.gene94274:CDS |
| GTCTAATTTCATTGATGAAA+AGG | 0.363110 | 7.3:-40519310 | MS.gene94274:intron |
| ATCACACGTGACTCTGAAAT+AGG | 0.363430 | 7.3:+40519414 | None:intergenic |
| ACAGGAACCATCCTATAAAC+TGG | 0.382808 | 7.3:+40519456 | None:intergenic |
| TTCTCGCGCTCTTTCTCATC+AGG | 0.391480 | 7.3:+40518204 | None:intergenic |
| ATTTGAACTCTTATCACAAA+TGG | 0.402550 | 7.3:+40519561 | None:intergenic |
| TTGAGTATATTGATGAAGCT+TGG | 0.430723 | 7.3:-40519389 | MS.gene94274:CDS |
| TTCTTTGGAGGAGAAGAGAT+TGG | 0.438548 | 7.3:-40518123 | MS.gene94274:CDS |
| AGGAGAAGAGATTGGCTTTG+TGG | 0.446167 | 7.3:-40518115 | MS.gene94274:CDS |
| AGCTTGGGAAATTTGTCAGC+AGG | 0.453112 | 7.3:+40518036 | None:intergenic |
| TTCCCATTATGAACAAGAAC+AGG | 0.453502 | 7.3:+40519438 | None:intergenic |
| CTGAAGGACAAGTTCTTTGG+AGG | 0.491967 | 7.3:-40518135 | MS.gene94274:CDS |
| CAAATTGCTCTGAAATTGAA+AGG | 0.502815 | 7.3:-40519543 | MS.gene94274:CDS |
| GGCATAACTTCTTTGACGAC+TGG | 0.505487 | 7.3:+40517982 | None:intergenic |
| TTGTTCAATCAGTGTACGAT+TGG | 0.516563 | 7.3:-40518249 | MS.gene94274:intron |
| CAAAGAAGTTATGCCTTCAA+AGG | 0.523092 | 7.3:-40517974 | MS.gene94274:CDS |
| TGATCCTTACAAAAGAGCCT+TGG | 0.527046 | 7.3:-40519343 | MS.gene94274:CDS |
| TAACTTCTTTGACGACTGGA+TGG | 0.546537 | 7.3:+40517986 | None:intergenic |
| GGCTCGTGAAGAATTATTCG+AGG | 0.551878 | 7.3:-40518181 | MS.gene94274:CDS |
| ATACAATCCAGTTTATAGGA+TGG | 0.576358 | 7.3:-40519463 | MS.gene94274:CDS |
| GTTTCTTGAGAATGAGCTGA+AGG | 0.580852 | 7.3:-40518151 | MS.gene94274:CDS |
| CTTACAAAAGAGCCTTGGAT+CGG | 0.586658 | 7.3:-40519338 | MS.gene94274:CDS |
| ATCAGTGTACGATTGGTGCA+TGG | 0.596691 | 7.3:-40518242 | MS.gene94274:intron |
| GCTTGGGAAATTTGTCAGCA+GGG | 0.597981 | 7.3:+40518037 | None:intergenic |
| TGATGAGAAAGAGCGCGAGA+AGG | 0.601244 | 7.3:-40518202 | MS.gene94274:CDS |
| ATTAGACCAAAACCGATCCA+AGG | 0.633959 | 7.3:+40519326 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGTTGAAGAAAAATT+GGG | - | chr7.3:40518014-40518033 | MS.gene94274:CDS | 15.0% |
| !! | AAAAATGAAATACAAAACAC+AGG | + | chr7.3:40518784-40518803 | None:intergenic | 20.0% |
| !! | CAAATATGTTGAAGAAAAAT+TGG | - | chr7.3:40518013-40518032 | MS.gene94274:CDS | 20.0% |
| !! | CATAACTAAATTTGATCAAT+TGG | + | chr7.3:40518479-40518498 | None:intergenic | 20.0% |
| !!! | TAATTTTAATAGTTAGAGTG+TGG | - | chr7.3:40518289-40518308 | MS.gene94274:intron | 20.0% |
| ! | ACTAGTATACATCTCATAAA+AGG | + | chr7.3:40518270-40518289 | None:intergenic | 25.0% |
| ! | ATCAGTAAGAAACAAATATG+TGG | + | chr7.3:40518943-40518962 | None:intergenic | 25.0% |
| ! | ATCTTAACAAACGTTTAAAG+TGG | + | chr7.3:40518504-40518523 | None:intergenic | 25.0% |
| ! | ATTTGAACTCTTATCACAAA+TGG | + | chr7.3:40517966-40517985 | None:intergenic | 25.0% |
| ! | CAAATTCATAGATAATCACA+TGG | + | chr7.3:40519124-40519143 | None:intergenic | 25.0% |
| ! | GTCTAATTTCATTGATGAAA+AGG | - | chr7.3:40518214-40518233 | MS.gene94274:CDS | 25.0% |
| ! | TCAAATACAATCCAGTTTAT+AGG | - | chr7.3:40518057-40518076 | MS.gene94274:CDS | 25.0% |
| !! | GTTAAGATGTTCAGATTTTA+AGG | - | chr7.3:40518516-40518535 | MS.gene94274:intron | 25.0% |
| !! | TTTGTTTCTTACTGATGTAA+TGG | - | chr7.3:40518947-40518966 | MS.gene94274:intron | 25.0% |
| !!! | GTATTTCGAGTTATAGAAAT+GGG | + | chr7.3:40518864-40518883 | None:intergenic | 25.0% |
| !!! | TCTACTTTAGAATGAATGTT+TGG | - | chr7.3:40518709-40518728 | MS.gene94274:intron | 25.0% |
| !!! | TGTATTTCGAGTTATAGAAA+TGG | + | chr7.3:40518865-40518884 | None:intergenic | 25.0% |
| AAAGTTCACATTTAGTGACA+TGG | + | chr7.3:40519220-40519239 | None:intergenic | 30.0% | |
| AACCAAACATACAGTAGTAT+AGG | - | chr7.3:40518747-40518766 | MS.gene94274:intron | 30.0% | |
| AATTTCCCAAGCTACAAAAA+TGG | - | chr7.3:40519498-40519517 | MS.gene94274:CDS | 30.0% | |
| ATACAATCCAGTTTATAGGA+TGG | - | chr7.3:40518061-40518080 | MS.gene94274:CDS | 30.0% | |
| GATGTAATGGTAAGGTTATA+AGG | - | chr7.3:40518960-40518979 | MS.gene94274:intron | 30.0% | |
| TAAGGATCATTAGGCAAAAT+AGG | + | chr7.3:40518170-40518189 | None:intergenic | 30.0% | |
| TTCCTGTTCTTGTTCATAAT+GGG | - | chr7.3:40518084-40518103 | MS.gene94274:CDS | 30.0% | |
| TTCTTACTGATGTAATGGTA+AGG | - | chr7.3:40518952-40518971 | MS.gene94274:intron | 30.0% | |
| TTGAGTATATTGATGAAGCT+TGG | - | chr7.3:40518135-40518154 | MS.gene94274:CDS | 30.0% | |
| !! | AAAGCTTGTTAGAACAACAA+CGG | + | chr7.3:40518436-40518455 | None:intergenic | 30.0% |
| !! | CAAATTGCTCTGAAATTGAA+AGG | - | chr7.3:40517981-40518000 | MS.gene94274:CDS | 30.0% |
| !! | TAATTCGTGTCGTTTGTTAT+GGG | + | chr7.3:40519007-40519026 | None:intergenic | 30.0% |
| !! | TGGTTTTTAAAAAGATGCAG+TGG | - | chr7.3:40518825-40518844 | MS.gene94274:intron | 30.0% |
| AGAAAACAAGAGAAGATCCT+TGG | - | chr7.3:40518892-40518911 | MS.gene94274:intron | 35.0% | |
| ATGGTAGATGAATTCTAGCA+TGG | + | chr7.3:40519201-40519220 | None:intergenic | 35.0% | |
| CAAAGAAGTTATGCCTTCAA+AGG | - | chr7.3:40519550-40519569 | MS.gene94274:CDS | 35.0% | |
| CCTTCAAAGGAACAACAATT+TGG | - | chr7.3:40519563-40519582 | MS.gene94274:CDS | 35.0% | |
| CTCCTATACTACTGTATGTT+TGG | + | chr7.3:40518752-40518771 | None:intergenic | 35.0% | |
| GTTCCTGTTCTTGTTCATAA+TGG | - | chr7.3:40518083-40518102 | MS.gene94274:CDS | 35.0% | |
| TTCCCATTATGAACAAGAAC+AGG | + | chr7.3:40518089-40518108 | None:intergenic | 35.0% | |
| TTGTTCAATCAGTGTACGAT+TGG | - | chr7.3:40519275-40519294 | MS.gene94274:intron | 35.0% | |
| ! | CCAAATTGTTGTTCCTTTGA+AGG | + | chr7.3:40519566-40519585 | None:intergenic | 35.0% |
| ! | CTGCTACTTCTTGGAATAAA+GGG | + | chr7.3:40519454-40519473 | None:intergenic | 35.0% |
| ! | GATGAAGAAGTTCAGCTTTT+GGG | - | chr7.3:40517927-40517946 | MS.gene94274:CDS | 35.0% |
| ! | GCTCTTTTGTAAGGATCATT+AGG | + | chr7.3:40518179-40518198 | None:intergenic | 35.0% |
| ! | TCTGCTACTTCTTGGAATAA+AGG | + | chr7.3:40519455-40519474 | None:intergenic | 35.0% |
| ! | TGATGAAGAAGTTCAGCTTT+TGG | - | chr7.3:40517926-40517945 | MS.gene94274:CDS | 35.0% |
| !! | AAGCTTGTTAGAACAACAAC+GGG | + | chr7.3:40518435-40518454 | None:intergenic | 35.0% |
| !! | AGACTCCATTTTTGTAGCTT+GGG | + | chr7.3:40519506-40519525 | None:intergenic | 35.0% |
| !! | CTAATTCGTGTCGTTTGTTA+TGG | + | chr7.3:40519008-40519027 | None:intergenic | 35.0% |
| !! | TAGACTCCATTTTTGTAGCT+TGG | + | chr7.3:40519507-40519526 | None:intergenic | 35.0% |
| ACAGGAACCATCCTATAAAC+TGG | + | chr7.3:40518071-40518090 | None:intergenic | 40.0% | |
| AGCATGGATCACACATTATG+TGG | + | chr7.3:40519185-40519204 | None:intergenic | 40.0% | |
| ATTAGACCAAAACCGATCCA+AGG | + | chr7.3:40518201-40518220 | None:intergenic | 40.0% | |
| CTTACAAAAGAGCCTTGGAT+CGG | - | chr7.3:40518186-40518205 | MS.gene94274:CDS | 40.0% | |
| CTTGACACACTTACACAACT+TGG | - | chr7.3:40518805-40518824 | MS.gene94274:intron | 40.0% | |
| GTTTCTTGAGAATGAGCTGA+AGG | - | chr7.3:40519373-40519392 | MS.gene94274:CDS | 40.0% | |
| TAACTTCTTTGACGACTGGA+TGG | + | chr7.3:40519541-40519560 | None:intergenic | 40.0% | |
| TGATCCTTACAAAAGAGCCT+TGG | - | chr7.3:40518181-40518200 | MS.gene94274:CDS | 40.0% | |
| ! | ACTGTTTCTCTGCTACTTCT+TGG | + | chr7.3:40519463-40519482 | None:intergenic | 40.0% |
| ! | GTGGTTTGAAATTGTGACTG+TGG | - | chr7.3:40518308-40518327 | MS.gene94274:intron | 40.0% |
| ! | GTTTGAAATTGTGACTGTGG+TGG | - | chr7.3:40518311-40518330 | MS.gene94274:intron | 40.0% |
| ! | TTCTTTGGAGGAGAAGAGAT+TGG | - | chr7.3:40519401-40519420 | MS.gene94274:CDS | 40.0% |
| !! | ATCACACGTGACTCTGAAAT+AGG | + | chr7.3:40518113-40518132 | None:intergenic | 40.0% |
| AGCTTGGGAAATTTGTCAGC+AGG | + | chr7.3:40519491-40519510 | None:intergenic | 45.0% | |
| ATCAGTGTACGATTGGTGCA+TGG | - | chr7.3:40519282-40519301 | MS.gene94274:intron | 45.0% | |
| CTGAAGGACAAGTTCTTTGG+AGG | - | chr7.3:40519389-40519408 | MS.gene94274:CDS | 45.0% | |
| GAGCTGAAGGACAAGTTCTT+TGG | - | chr7.3:40519386-40519405 | MS.gene94274:CDS | 45.0% | |
| GCTTGGGAAATTTGTCAGCA+GGG | + | chr7.3:40519490-40519509 | None:intergenic | 45.0% | |
| GGCATAACTTCTTTGACGAC+TGG | + | chr7.3:40519545-40519564 | None:intergenic | 45.0% | |
| GGCTCGTGAAGAATTATTCG+AGG | - | chr7.3:40519343-40519362 | MS.gene94274:CDS | 45.0% | |
| ! | CGATCCAAGGCTCTTTTGTA+AGG | + | chr7.3:40518188-40518207 | None:intergenic | 45.0% |
| !! | AAAGAGCCTTGGATCGGTTT+TGG | - | chr7.3:40518192-40518211 | MS.gene94274:CDS | 45.0% |
| !! | AGGAGAAGAGATTGGCTTTG+TGG | - | chr7.3:40519409-40519428 | MS.gene94274:CDS | 45.0% |
| !!! | AGTTCAGCTTTTGGGTTCAG+TGG | - | chr7.3:40517935-40517954 | MS.gene94274:CDS | 45.0% |
| !!! | GTTCAGCTTTTGGGTTCAGT+GGG | - | chr7.3:40517936-40517955 | MS.gene94274:CDS | 45.0% |
| AAACACTGTCTCCACTGCCA+AGG | + | chr7.3:40518912-40518931 | None:intergenic | 50.0% | |
| CAAGAGAAGATCCTTGGCAG+TGG | - | chr7.3:40518898-40518917 | MS.gene94274:intron | 50.0% | |
| TTCTCGCGCTCTTTCTCATC+AGG | + | chr7.3:40519323-40519342 | None:intergenic | 50.0% | |
| ! | TGATGAGAAAGAGCGCGAGA+AGG | - | chr7.3:40519322-40519341 | MS.gene94274:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 40517915 | 40519631 | 40517915 | ID=MS.gene94274 |
| chr7.3 | mRNA | 40517915 | 40519631 | 40517915 | ID=MS.gene94274.t1;Parent=MS.gene94274 |
| chr7.3 | exon | 40519311 | 40519631 | 40519311 | ID=MS.gene94274.t1.exon1;Parent=MS.gene94274.t1 |
| chr7.3 | CDS | 40519311 | 40519631 | 40519311 | ID=cds.MS.gene94274.t1;Parent=MS.gene94274.t1 |
| chr7.3 | exon | 40517915 | 40518259 | 40517915 | ID=MS.gene94274.t1.exon2;Parent=MS.gene94274.t1 |
| chr7.3 | CDS | 40517915 | 40518259 | 40517915 | ID=cds.MS.gene94274.t1;Parent=MS.gene94274.t1 |
| Gene Sequence |
| Protein sequence |
