Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94350.t1 | XP_003600045.1 | 98 | 147 | 3 | 0 | 1 | 147 | 1 | 147 | 2.20E-77 | 298.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94350.t1 | G7IXJ5 | 98.0 | 147 | 3 | 0 | 1 | 147 | 1 | 147 | 1.6e-77 | 298.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052516 | MS.gene94350 | 0.814174 | 1.76E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene94350 | 0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene94350 | 0.81113 | 8.17E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene94350 | 0.807702 | 4.44E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94350.t1 | MTR_3g051110 | 97.959 | 147 | 3 | 0 | 1 | 147 | 1 | 147 | 4.74e-107 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94350.t1 | AT5G54855 | 67.123 | 146 | 48 | 0 | 1 | 146 | 1 | 146 | 2.21e-72 | 214 |
Find 35 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTTGGTGGTGGTAGTTC+GGG | 0.246569 | 3.2:+43650681 | MS.gene94350:CDS |
| GTTTGTGGTGATTCTTCTCT+TGG | 0.332875 | 3.2:+43647173 | MS.gene94350:CDS |
| TCGTCTTGGTGGTGGTAGTT+CGG | 0.336867 | 3.2:+43650680 | MS.gene94350:CDS |
| CGGCGAAGTTCTAAATTATC+AGG | 0.338733 | 3.2:+43650548 | MS.gene94350:CDS |
| GGAATTGATTGTGTTGTTGA+TGG | 0.352832 | 3.2:+43647088 | MS.gene94350:CDS |
| CCTTCAAGAACATGATCTTC+AGG | 0.398537 | 3.2:-43647197 | None:intergenic |
| ATTTAGAACTTCGCCGGACT+TGG | 0.414951 | 3.2:-43650541 | None:intergenic |
| TTCAGTTACAATCATCCATC+GGG | 0.416663 | 3.2:+43650711 | MS.gene94350:CDS |
| CCTGAAGATCATGTTCTTGA+AGG | 0.449881 | 3.2:+43647197 | MS.gene94350:CDS |
| CATGAGCACTGCACTCGTCT+TGG | 0.451233 | 3.2:+43650666 | MS.gene94350:CDS |
| AATGAAGCAGAAGATGATAG+TGG | 0.473190 | 3.2:+43647067 | MS.gene94350:CDS |
| TCAGGCATTTACAGATGCTA+AGG | 0.492192 | 3.2:+43650566 | MS.gene94350:CDS |
| CAGTATGTTGGAACATTGAC+AGG | 0.497172 | 3.2:-43650768 | None:intergenic |
| GTTCTTTGCATAACCAAGTC+CGG | 0.497448 | 3.2:+43650528 | MS.gene94350:CDS |
| CAAGACGAGTGCAGTGCTCA+TGG | 0.501517 | 3.2:-43650665 | None:intergenic |
| TTGAGTGTAAGTGGTTGGAC+TGG | 0.520329 | 3.2:+43647122 | MS.gene94350:CDS |
| AGAGTTGTTTGTGATGTTTG+TGG | 0.528736 | 3.2:+43647158 | MS.gene94350:CDS |
| ATTGATTGTGTTGTTGATGG+TGG | 0.529257 | 3.2:+43647091 | MS.gene94350:CDS |
| TGCTCATGGAAACTACTGAT+TGG | 0.530403 | 3.2:-43650651 | None:intergenic |
| CAGGCATTTACAGATGCTAA+GGG | 0.533023 | 3.2:+43650567 | MS.gene94350:CDS |
| GAGCACTGCACTCGTCTTGG+TGG | 0.534296 | 3.2:+43650669 | MS.gene94350:CDS |
| GCATCCCAACGATCACTCTC+AGG | 0.535746 | 3.2:-43650615 | None:intergenic |
| CTGATAATTTAGAACTTCGC+CGG | 0.538086 | 3.2:-43650547 | None:intergenic |
| CACTGCACTCGTCTTGGTGG+TGG | 0.544640 | 3.2:+43650672 | MS.gene94350:CDS |
| ATTCAGTTACAATCATCCAT+CGG | 0.553429 | 3.2:+43650710 | MS.gene94350:CDS |
| AATGCCTGAGAGTGATCGTT+GGG | 0.564183 | 3.2:+43650611 | MS.gene94350:CDS |
| CAATGCCTGAGAGTGATCGT+TGG | 0.565355 | 3.2:+43650610 | MS.gene94350:CDS |
| GTCTTGGTGGTGGTAGTTCG+GGG | 0.567915 | 3.2:+43650682 | MS.gene94350:CDS |
| ATATATCAGATGCAGTATGT+TGG | 0.578522 | 3.2:-43650780 | None:intergenic |
| GGTTGGACTGGTGAAATTCG+TGG | 0.595778 | 3.2:+43647134 | MS.gene94350:CDS |
| ATGTTGGAACATTGACAGGT+TGG | 0.603546 | 3.2:-43650764 | None:intergenic |
| ATTGACAGGTTGGTAAACAA+AGG | 0.608179 | 3.2:-43650754 | None:intergenic |
| ACAGCATGTGAATGCCCCGA+TGG | 0.652310 | 3.2:-43650726 | None:intergenic |
| AGGCATTTACAGATGCTAAG+GGG | 0.710498 | 3.2:+43650568 | MS.gene94350:CDS |
| TCAGTTACAATCATCCATCG+GGG | 0.758006 | 3.2:+43650712 | MS.gene94350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATAATATTGAGT+CGG | + | chr3.2:43649039-43649058 | MS.gene94350:intron | 10.0% |
| !!! | ATTTTAAAAATTAGTAAATC+TGG | + | chr3.2:43649630-43649649 | MS.gene94350:intron | 10.0% |
| !! | ATTCATGTTAAAATAAATCT+GGG | - | chr3.2:43650425-43650444 | None:intergenic | 15.0% |
| !! | CTATTACCTTAAATTATTAT+TGG | - | chr3.2:43650037-43650056 | None:intergenic | 15.0% |
| !! | TAATTTACTCAAATTATTAC+AGG | - | chr3.2:43647424-43647443 | None:intergenic | 15.0% |
| !! | TAGATACCAATAATAATTTA+AGG | + | chr3.2:43650028-43650047 | MS.gene94350:intron | 15.0% |
| !! | TATTCATGTTAAAATAAATC+TGG | - | chr3.2:43650426-43650445 | None:intergenic | 15.0% |
| !!! | ATATTTTTAAGGTTATACAA+AGG | - | chr3.2:43648989-43649008 | None:intergenic | 15.0% |
| !!! | TATTTTTAAGGTTATACAAA+GGG | - | chr3.2:43648988-43649007 | None:intergenic | 15.0% |
| !! | ATTTCATTTACAAATAAGTG+GGG | + | chr3.2:43647531-43647550 | MS.gene94350:intron | 20.0% |
| !! | CAAATTATTATTCTTCTATC+GGG | - | chr3.2:43648139-43648158 | None:intergenic | 20.0% |
| !! | GATTTCATTTACAAATAAGT+GGG | + | chr3.2:43647530-43647549 | MS.gene94350:intron | 20.0% |
| !! | GCAAATTATTATTCTTCTAT+CGG | - | chr3.2:43648140-43648159 | None:intergenic | 20.0% |
| !! | TATGAAATGAAGAGATAATA+TGG | - | chr3.2:43649147-43649166 | None:intergenic | 20.0% |
| !! | TTAAACCAAAAAGTTTGAAA+TGG | - | chr3.2:43650386-43650405 | None:intergenic | 20.0% |
| !! | TTCATGTTAAAATAAATCTG+GGG | - | chr3.2:43650424-43650443 | None:intergenic | 20.0% |
| !! | TTTAAACAATGATACAACAA+AGG | + | chr3.2:43649917-43649936 | MS.gene94350:intron | 20.0% |
| !! | TTTCTGTTGAAAATTTACTT+TGG | - | chr3.2:43647718-43647737 | None:intergenic | 20.0% |
| !! | TTTGATTGAGTTTATGAAAT+GGG | + | chr3.2:43647266-43647285 | MS.gene94350:intron | 20.0% |
| !!! | AAAAACCATTTCAAACTTTT+TGG | + | chr3.2:43650378-43650397 | MS.gene94350:intron | 20.0% |
| !!! | ATAGAAGAATAATAATTTGC+AGG | + | chr3.2:43648140-43648159 | MS.gene94350:intron | 20.0% |
| !!! | ATTTGTGTATTTAACCATTT+TGG | + | chr3.2:43649837-43649856 | MS.gene94350:intron | 20.0% |
| !!! | GTGAATTCTATATATGATTT+TGG | + | chr3.2:43647295-43647314 | MS.gene94350:intron | 20.0% |
| !!! | TAGAAGAATAATAATTTGCA+GGG | + | chr3.2:43648141-43648160 | MS.gene94350:intron | 20.0% |
| !!! | TCACTTTTAATTTTTGTTTC+TGG | + | chr3.2:43649355-43649374 | MS.gene94350:intron | 20.0% |
| !!! | TTTATGAAATGGGTTATTTT+GGG | + | chr3.2:43647323-43647342 | MS.gene94350:intron | 20.0% |
| !!! | TTTTGATTGAGTTTATGAAA+TGG | + | chr3.2:43647265-43647284 | MS.gene94350:intron | 20.0% |
| ! | AAATGAGGATAATGATTGTT+AGG | + | chr3.2:43649238-43649257 | MS.gene94350:intron | 25.0% |
| ! | AAGTTGTGTGTTAAATGTAT+TGG | - | chr3.2:43648010-43648029 | None:intergenic | 25.0% |
| ! | AATATCTCATTCTTTGAGTA+AGG | + | chr3.2:43649882-43649901 | MS.gene94350:intron | 25.0% |
| ! | AATGGTTAAATACACAAATG+TGG | - | chr3.2:43649836-43649855 | None:intergenic | 25.0% |
| ! | AGGAAAAGAGAATATTTCAA+AGG | - | chr3.2:43648512-43648531 | None:intergenic | 25.0% |
| ! | CAAAGAATGAGATATTGTAA+TGG | - | chr3.2:43649878-43649897 | None:intergenic | 25.0% |
| ! | CGATTTCATTTACAAATAAG+TGG | + | chr3.2:43647529-43647548 | MS.gene94350:intron | 25.0% |
| ! | CTTTATGGGGAAATATTAAT+AGG | + | chr3.2:43647899-43647918 | MS.gene94350:intron | 25.0% |
| ! | GATAATGATTGTTAGGAAAT+AGG | + | chr3.2:43649245-43649264 | MS.gene94350:intron | 25.0% |
| ! | GATTTCATTTAAGAAGTTGA+AGG | + | chr3.2:43649197-43649216 | MS.gene94350:intron | 25.0% |
| ! | GGAAAAGAGAATATTTCAAA+GGG | - | chr3.2:43648511-43648530 | None:intergenic | 25.0% |
| ! | GTTAATGTTTATTTCACAAG+TGG | + | chr3.2:43649595-43649614 | MS.gene94350:intron | 25.0% |
| ! | TAAATAGTGTATAAGAGAGA+GGG | - | chr3.2:43648453-43648472 | None:intergenic | 25.0% |
| ! | TATCTTTATCTCTCTCTAAT+TGG | + | chr3.2:43647220-43647239 | MS.gene94350:intron | 25.0% |
| ! | TTACTGAACCAAAATCTTTA+TGG | - | chr3.2:43647771-43647790 | None:intergenic | 25.0% |
| ! | TTTGGTAGAGTTTATGAAAT+GGG | + | chr3.2:43647313-43647332 | MS.gene94350:intron | 25.0% |
| !! | AGAAGAATAATAATTTGCAG+GGG | + | chr3.2:43648142-43648161 | MS.gene94350:intron | 25.0% |
| !! | TTATGTGTCAGTATTCATTT+TGG | - | chr3.2:43647398-43647417 | None:intergenic | 25.0% |
| !! | TTGTTACTCCATAAAGATTT+TGG | + | chr3.2:43647760-43647779 | MS.gene94350:intron | 25.0% |
| !! | TTTTGGTAGAGTTTATGAAA+TGG | + | chr3.2:43647312-43647331 | MS.gene94350:intron | 25.0% |
| !!! | CATACAAATGAGTCATTTTT+AGG | - | chr3.2:43649700-43649719 | None:intergenic | 25.0% |
| !!! | GTTTATGAAATGGGTTATTT+TGG | + | chr3.2:43647322-43647341 | MS.gene94350:intron | 25.0% |
| !!! | TGAGATTTTGAGTTTTATGT+CGG | + | chr3.2:43649435-43649454 | MS.gene94350:intron | 25.0% |
| AAACACTTATGTGTATAGCA+AGG | - | chr3.2:43647797-43647816 | None:intergenic | 30.0% | |
| AAATTCGTTGTTTAAGTGCA+GGG | - | chr3.2:43648197-43648216 | None:intergenic | 30.0% | |
| AATGAAGAGATAATATGGAG+AGG | - | chr3.2:43649142-43649161 | None:intergenic | 30.0% | |
| ACTATACTGCTGTTACATAT+CGG | + | chr3.2:43648823-43648842 | MS.gene94350:intron | 30.0% | |
| AGTTGATTGCAAGAACATTA+GGG | - | chr3.2:43647881-43647900 | None:intergenic | 30.0% | |
| ATAACAGCACAAAAGTTAGA+GGG | - | chr3.2:43650339-43650358 | None:intergenic | 30.0% | |
| ATAAGCAGATTCTTGTTAGA+AGG | + | chr3.2:43647840-43647859 | MS.gene94350:intron | 30.0% | |
| ATATCCAACACAAACTCAAT+TGG | - | chr3.2:43647463-43647482 | None:intergenic | 30.0% | |
| ATCAGTTACAGATCTATTGT+AGG | + | chr3.2:43650245-43650264 | MS.gene94350:intron | 30.0% | |
| ATCCGTTATTGCTTAAATAG+CGG | + | chr3.2:43648932-43648951 | MS.gene94350:intron | 30.0% | |
| ATTAGTTGTGCTGAACTATT+TGG | + | chr3.2:43649317-43649336 | MS.gene94350:intron | 30.0% | |
| ATTCAGTTACAATCATCCAT+CGG | + | chr3.2:43650710-43650729 | MS.gene94350:CDS | 30.0% | |
| CAAGACAGTGTGATTAATAA+CGG | - | chr3.2:43649568-43649587 | None:intergenic | 30.0% | |
| CAGTCTTTAAGCACTTTAAA+TGG | - | chr3.2:43648048-43648067 | None:intergenic | 30.0% | |
| GATAGCAATCTAATAAAGTG+AGG | - | chr3.2:43647674-43647693 | None:intergenic | 30.0% | |
| GTAAATAGTGTATAAGAGAG+AGG | - | chr3.2:43648454-43648473 | None:intergenic | 30.0% | |
| GTAGTGAAGACAAAACTTAT+TGG | + | chr3.2:43648655-43648674 | MS.gene94350:intron | 30.0% | |
| GTTCTTGCAATCAACTTTAT+GGG | + | chr3.2:43647885-43647904 | MS.gene94350:intron | 30.0% | |
| TAAATGCTGCTAAAAGAACA+GGG | - | chr3.2:43649752-43649771 | None:intergenic | 30.0% | |
| TAAGCAGATTCTTGTTAGAA+GGG | + | chr3.2:43647841-43647860 | MS.gene94350:intron | 30.0% | |
| TACACAAAATCCTTCTACTT+GGG | + | chr3.2:43648471-43648490 | MS.gene94350:intron | 30.0% | |
| TACTTATATCAACCACTTTG+TGG | + | chr3.2:43649499-43649518 | MS.gene94350:intron | 30.0% | |
| TACTTGAAATCTACATCCAA+CGG | - | chr3.2:43648273-43648292 | None:intergenic | 30.0% | |
| TATATGTAGCATCAACACTT+TGG | - | chr3.2:43650137-43650156 | None:intergenic | 30.0% | |
| TCCCTTCTATAATTGCAAAA+GGG | - | chr3.2:43650161-43650180 | None:intergenic | 30.0% | |
| TGCAGTGTTACAAGATATTA+CGG | - | chr3.2:43650315-43650334 | None:intergenic | 30.0% | |
| TGTTCTTGCAATCAACTTTA+TGG | + | chr3.2:43647884-43647903 | MS.gene94350:intron | 30.0% | |
| TTACACAAAATCCTTCTACT+TGG | + | chr3.2:43648470-43648489 | MS.gene94350:intron | 30.0% | |
| TTCCCTTCTATAATTGCAAA+AGG | - | chr3.2:43650162-43650181 | None:intergenic | 30.0% | |
| TTCCGCTATTTAAGCAATAA+CGG | - | chr3.2:43648937-43648956 | None:intergenic | 30.0% | |
| TTCCTATTAAAACAATGCAG+TGG | + | chr3.2:43650471-43650490 | MS.gene94350:intron | 30.0% | |
| TTCTTGCAATCAACTTTATG+GGG | + | chr3.2:43647886-43647905 | MS.gene94350:intron | 30.0% | |
| TTGACAGTAGATAAAACTAC+CGG | + | chr3.2:43649292-43649311 | MS.gene94350:intron | 30.0% | |
| ! | AACCCTTTTGCAATTATAGA+AGG | + | chr3.2:43650156-43650175 | MS.gene94350:intron | 30.0% |
| ! | AAGTTGATTGCAAGAACATT+AGG | - | chr3.2:43647882-43647901 | None:intergenic | 30.0% |
| ! | ACCCTTTTGCAATTATAGAA+GGG | + | chr3.2:43650157-43650176 | MS.gene94350:intron | 30.0% |
| ! | GAAGAATAATAATTTGCAGG+GGG | + | chr3.2:43648143-43648162 | MS.gene94350:intron | 30.0% |
| ! | GACTCTTGTCTTATTGTATT+TGG | + | chr3.2:43649798-43649817 | MS.gene94350:intron | 30.0% |
| ! | GTTTTGTCTTCACTACTATT+AGG | - | chr3.2:43648651-43648670 | None:intergenic | 30.0% |
| ! | TTATGCACATCAAACCTTTT+GGG | - | chr3.2:43648757-43648776 | None:intergenic | 30.0% |
| ! | TTTATGCACATCAAACCTTT+TGG | - | chr3.2:43648758-43648777 | None:intergenic | 30.0% |
| ! | TTTTGAATGTTCTGATGTAG+GGG | + | chr3.2:43650494-43650513 | MS.gene94350:intron | 30.0% |
| !! | AAATAGTCATCCTCTAGAAT+TGG | + | chr3.2:43649956-43649975 | MS.gene94350:intron | 30.0% |
| !! | CAGCTCACATGATATTTTTA+AGG | - | chr3.2:43649000-43649019 | None:intergenic | 30.0% |
| !! | CATTTTGGTGGAGAATTATA+AGG | - | chr3.2:43647383-43647402 | None:intergenic | 30.0% |
| !! | GTTTTGAATGTTCTGATGTA+GGG | + | chr3.2:43650493-43650512 | MS.gene94350:intron | 30.0% |
| !! | TAACTTTTGTGCTGTTATGA+AGG | + | chr3.2:43650341-43650360 | MS.gene94350:intron | 30.0% |
| !!! | AACCACTGCATTGTTTTAAT+AGG | - | chr3.2:43650476-43650495 | None:intergenic | 30.0% |
| !!! | GCATAAACCTTTTAAAACCT+TGG | + | chr3.2:43648771-43648790 | MS.gene94350:intron | 30.0% |
| AATGAAGCAGAAGATGATAG+TGG | + | chr3.2:43647067-43647086 | MS.gene94350:CDS | 35.0% | |
| ACAATGATACAACAAAGGAC+AGG | + | chr3.2:43649922-43649941 | MS.gene94350:intron | 35.0% | |
| ACACAAAATCCTTCTACTTG+GGG | + | chr3.2:43648472-43648491 | MS.gene94350:intron | 35.0% | |
| ACTATGACTCATCACCAAAA+TGG | - | chr3.2:43649854-43649873 | None:intergenic | 35.0% | |
| AGAGTTGTTTGTGATGTTTG+TGG | + | chr3.2:43647158-43647177 | MS.gene94350:CDS | 35.0% | |
| AGTTCAGCACAACTAATAAC+CGG | - | chr3.2:43649314-43649333 | None:intergenic | 35.0% | |
| ATAGTGTTAGAGATCAGCAA+AGG | - | chr3.2:43648536-43648555 | None:intergenic | 35.0% | |
| ATGACTTGAACCAATTCTAG+AGG | - | chr3.2:43649969-43649988 | None:intergenic | 35.0% | |
| ATTCACGTAGCTAGATACAT+CGG | + | chr3.2:43648244-43648263 | MS.gene94350:intron | 35.0% | |
| CAAATTCGTTGTTTAAGTGC+AGG | - | chr3.2:43648198-43648217 | None:intergenic | 35.0% | |
| CATAAACTCATTCTCCCAAA+AGG | + | chr3.2:43648740-43648759 | MS.gene94350:intron | 35.0% | |
| CATAACAGCACAAAAGTTAG+AGG | - | chr3.2:43650340-43650359 | None:intergenic | 35.0% | |
| CCTTTACAAATCCAGCAATT+CGG | + | chr3.2:43648090-43648109 | MS.gene94350:intron | 35.0% | |
| CGTTATTAATCACACTGTCT+TGG | + | chr3.2:43649566-43649585 | MS.gene94350:intron | 35.0% | |
| CTAAATGCTGCTAAAAGAAC+AGG | - | chr3.2:43649753-43649772 | None:intergenic | 35.0% | |
| CTATACTGCTGTTACATATC+GGG | + | chr3.2:43648824-43648843 | MS.gene94350:intron | 35.0% | |
| CTGCACTTAAACAACGAATT+TGG | + | chr3.2:43648196-43648215 | MS.gene94350:intron | 35.0% | |
| GATATGTAACAGCAGTATAG+TGG | - | chr3.2:43648824-43648843 | None:intergenic | 35.0% | |
| GCAGTGTTACAAGATATTAC+GGG | - | chr3.2:43650314-43650333 | None:intergenic | 35.0% | |
| GCATCAACACTTTGGATTAA+AGG | - | chr3.2:43650129-43650148 | None:intergenic | 35.0% | |
| GTAACCAATTGAGTTTGTGT+TGG | + | chr3.2:43647456-43647475 | MS.gene94350:intron | 35.0% | |
| GTTGATTGCAAGAACATTAG+GGG | - | chr3.2:43647880-43647899 | None:intergenic | 35.0% | |
| TAACATACTCTCTAGCAAAC+AGG | - | chr3.2:43648686-43648705 | None:intergenic | 35.0% | |
| TACTTAACAACACTGAACCA+AGG | - | chr3.2:43648791-43648810 | None:intergenic | 35.0% | |
| TGTTATGAAGGAAAAGAGGA+AGG | + | chr3.2:43650353-43650372 | MS.gene94350:intron | 35.0% | |
| TTCAGTTACAATCATCCATC+GGG | + | chr3.2:43650711-43650730 | MS.gene94350:CDS | 35.0% | |
| TTGCAATTATAGAAGGGAAG+AGG | + | chr3.2:43650163-43650182 | MS.gene94350:intron | 35.0% | |
| TTTGGATACCTTGCAATTAC+AGG | + | chr3.2:43648214-43648233 | MS.gene94350:intron | 35.0% | |
| ! | AAAGTTTGTTTAGTGCTGAG+AGG | - | chr3.2:43649118-43649137 | None:intergenic | 35.0% |
| ! | ATTGATTGTGTTGTTGATGG+TGG | + | chr3.2:43647091-43647110 | MS.gene94350:CDS | 35.0% |
| ! | CTGATAATTTAGAACTTCGC+CGG | - | chr3.2:43650550-43650569 | None:intergenic | 35.0% |
| ! | CTTTGGATTAAAGGTGTGTT+CGG | - | chr3.2:43650120-43650139 | None:intergenic | 35.0% |
| ! | GGAATTGATTGTGTTGTTGA+TGG | + | chr3.2:43647088-43647107 | MS.gene94350:CDS | 35.0% |
| ! | GTTCAGTGTTGTTAAGTAAC+CGG | + | chr3.2:43648793-43648812 | MS.gene94350:intron | 35.0% |
| ! | TGTGTCAGTATTCATTTTGG+TGG | - | chr3.2:43647395-43647414 | None:intergenic | 35.0% |
| !! | ATTGACAGGTTGGTAAACAA+AGG | - | chr3.2:43650757-43650776 | None:intergenic | 35.0% |
| !!! | CACTGAACCAAGGTTTTAAA+AGG | - | chr3.2:43648781-43648800 | None:intergenic | 35.0% |
| !!! | GGTTTTGAATGTTCTGATGT+AGG | + | chr3.2:43650492-43650511 | MS.gene94350:intron | 35.0% |
| !!! | GTGTTTGTTTTGAGTGTAAG+TGG | + | chr3.2:43647113-43647132 | MS.gene94350:CDS | 35.0% |
| !!! | TTGTTTTGAGTGTAAGTGGT+TGG | + | chr3.2:43647117-43647136 | MS.gene94350:CDS | 35.0% |
| AACAACTAACCCCAAGTAGA+AGG | - | chr3.2:43648484-43648503 | None:intergenic | 40.0% | |
| AACTGACAAACTTCCTCCAT+TGG | - | chr3.2:43647614-43647633 | None:intergenic | 40.0% | |
| AGGCATTTACAGATGCTAAG+GGG | + | chr3.2:43650568-43650587 | MS.gene94350:CDS | 40.0% | |
| ATATGGGAAATCTGTGTGCA+GGG | + | chr3.2:43648387-43648406 | MS.gene94350:intron | 40.0% | |
| ATATTGAGTCGGTGATGAGA+TGG | + | chr3.2:43649050-43649069 | MS.gene94350:intron | 40.0% | |
| ATGTAGCTGAGTGAGTGATA+TGG | + | chr3.2:43648370-43648389 | MS.gene94350:intron | 40.0% | |
| ATGTTGGAACATTGACAGGT+TGG | - | chr3.2:43650767-43650786 | None:intergenic | 40.0% | |
| CAATGACAAGACAGCTGAAA+TGG | - | chr3.2:43648583-43648602 | None:intergenic | 40.0% | |
| CAGGCATTTACAGATGCTAA+GGG | + | chr3.2:43650567-43650586 | MS.gene94350:CDS | 40.0% | |
| CAGTATGTTGGAACATTGAC+AGG | - | chr3.2:43650771-43650790 | None:intergenic | 40.0% | |
| CCGAATTGCTGGATTTGTAA+AGG | - | chr3.2:43648093-43648112 | None:intergenic | 40.0% | |
| CCTCAGAATCAATGTCTTGA+AGG | - | chr3.2:43649178-43649197 | None:intergenic | 40.0% | |
| CCTGAAGATCATGTTCTTGA+AGG | + | chr3.2:43647197-43647216 | MS.gene94350:CDS | 40.0% | |
| CCTTCAAGAACATGATCTTC+AGG | - | chr3.2:43647200-43647219 | None:intergenic | 40.0% | |
| GAGTTATGTTACGATGTCAC+TGG | + | chr3.2:43647578-43647597 | MS.gene94350:intron | 40.0% | |
| GCATTGAGACATTGCATCAA+AGG | - | chr3.2:43649723-43649742 | None:intergenic | 40.0% | |
| GGTAGAGTACAGAATCTAGA+AGG | + | chr3.2:43648164-43648183 | MS.gene94350:intron | 40.0% | |
| GTATCTAGCTACGTGAATGT+GGG | - | chr3.2:43648242-43648261 | None:intergenic | 40.0% | |
| GTGGAAACCAATTACTGAGA+GGG | - | chr3.2:43648613-43648632 | None:intergenic | 40.0% | |
| GTTCTTTGCATAACCAAGTC+CGG | + | chr3.2:43650528-43650547 | MS.gene94350:CDS | 40.0% | |
| GTTTGTGGTGATTCTTCTCT+TGG | + | chr3.2:43647173-43647192 | MS.gene94350:CDS | 40.0% | |
| TAACTGATCCAACCCTTCAT+AGG | - | chr3.2:43650233-43650252 | None:intergenic | 40.0% | |
| TATTGAGTCGGTGATGAGAT+GGG | + | chr3.2:43649051-43649070 | MS.gene94350:intron | 40.0% | |
| TCAGGCATTTACAGATGCTA+AGG | + | chr3.2:43650566-43650585 | MS.gene94350:CDS | 40.0% | |
| TCAGTTACAATCATCCATCG+GGG | + | chr3.2:43650712-43650731 | MS.gene94350:CDS | 40.0% | |
| TGAAATGGAGGGAATGTGAT+TGG | - | chr3.2:43648568-43648587 | None:intergenic | 40.0% | |
| TGCTCATGGAAACTACTGAT+TGG | - | chr3.2:43650654-43650673 | None:intergenic | 40.0% | |
| TGGATTTGTAAAGGACGCTA+GGG | - | chr3.2:43648084-43648103 | None:intergenic | 40.0% | |
| TGTAACCACATGTGTTGTGT+TGG | + | chr3.2:43650068-43650087 | MS.gene94350:intron | 40.0% | |
| TGTAGCTGAGTGAGTGATAT+GGG | + | chr3.2:43648371-43648390 | MS.gene94350:intron | 40.0% | |
| TGTATAGCTGTTGCTGTAGT+GGG | + | chr3.2:43650205-43650224 | MS.gene94350:intron | 40.0% | |
| TGTATCTAGCTACGTGAATG+TGG | - | chr3.2:43648243-43648262 | None:intergenic | 40.0% | |
| TGTCTCACTATCGCTAAATG+AGG | + | chr3.2:43649223-43649242 | MS.gene94350:intron | 40.0% | |
| TGTGGAAACCAATTACTGAG+AGG | - | chr3.2:43648614-43648633 | None:intergenic | 40.0% | |
| TGTTAGAGATCAGCAAAGGA+AGG | - | chr3.2:43648532-43648551 | None:intergenic | 40.0% | |
| TGTTTGACACGTGTTAGAGT+CGG | - | chr3.2:43650097-43650116 | None:intergenic | 40.0% | |
| ! | AAATAGCGGAAACCACAAAG+TGG | - | chr3.2:43649514-43649533 | None:intergenic | 40.0% |
| ! | CTCAGTAATTGGTTTCCACA+TGG | + | chr3.2:43648614-43648633 | MS.gene94350:intron | 40.0% |
| ! | GCTGTTACATATCGGGATTT+TGG | + | chr3.2:43648831-43648850 | MS.gene94350:intron | 40.0% |
| ! | GTAGGCATTGTTTGCGAATT+TGG | - | chr3.2:43648416-43648435 | None:intergenic | 40.0% |
| ! | GTGCTGTTATGAAGGAAAAG+AGG | + | chr3.2:43650349-43650368 | MS.gene94350:intron | 40.0% |
| ! | TGGCAGTGCATTTTGCATAT+CGG | + | chr3.2:43648905-43648924 | MS.gene94350:intron | 40.0% |
| ! | TTCGCAAGAGATTTAGTTCG+TGG | + | chr3.2:43650282-43650301 | MS.gene94350:intron | 40.0% |
| !! | CCTTCAAGACATTGATTCTG+AGG | + | chr3.2:43649175-43649194 | MS.gene94350:intron | 40.0% |
| !! | CGGCGAAGTTCTAAATTATC+AGG | + | chr3.2:43650548-43650567 | MS.gene94350:CDS | 40.0% |
| !! | GTGTGATTAATAACGGATCG+CGG | - | chr3.2:43649561-43649580 | None:intergenic | 40.0% |
| !! | TGAAGCATTGACATAGACAC+AGG | + | chr3.2:43649990-43650009 | MS.gene94350:intron | 40.0% |
| !!! | AAGTGGGGTTTTTGAAGTGT+TGG | + | chr3.2:43647546-43647565 | MS.gene94350:intron | 40.0% |
| AATGCCTGAGAGTGATCGTT+GGG | + | chr3.2:43650611-43650630 | MS.gene94350:CDS | 45.0% | |
| AGAGAGGGAACAGAATGATG+AGG | - | chr3.2:43648438-43648457 | None:intergenic | 45.0% | |
| AGCAACAGCTATACAGTACC+AGG | - | chr3.2:43650200-43650219 | None:intergenic | 45.0% | |
| AGGGAACAGAATGATGAGGT+AGG | - | chr3.2:43648434-43648453 | None:intergenic | 45.0% | |
| ATTGAGTCGGTGATGAGATG+GGG | + | chr3.2:43649052-43649071 | MS.gene94350:intron | 45.0% | |
| CAACAAAGGACAGGTGAATG+TGG | + | chr3.2:43649931-43649950 | MS.gene94350:intron | 45.0% | |
| CACTCACTCAGCTACATCAT+CGG | - | chr3.2:43648367-43648386 | None:intergenic | 45.0% | |
| CAGCTGTCTTGTCATTGTGT+GGG | + | chr3.2:43648586-43648605 | MS.gene94350:intron | 45.0% | |
| CGATTCTGCTATCACTGCAA+TGG | + | chr3.2:43648885-43648904 | MS.gene94350:intron | 45.0% | |
| CTGGATTTGTAAAGGACGCT+AGG | - | chr3.2:43648085-43648104 | None:intergenic | 45.0% | |
| CTGTATAGCTGTTGCTGTAG+TGG | + | chr3.2:43650204-43650223 | MS.gene94350:intron | 45.0% | |
| GACAAGACAGCTGAAATGGA+GGG | - | chr3.2:43648579-43648598 | None:intergenic | 45.0% | |
| GATATGGGAAATCTGTGTGC+AGG | + | chr3.2:43648386-43648405 | MS.gene94350:intron | 45.0% | |
| GCAGAATCGCAATATCGTAC+CGG | - | chr3.2:43648874-43648893 | None:intergenic | 45.0% | |
| TCAGCTGTCTTGTCATTGTG+TGG | + | chr3.2:43648585-43648604 | MS.gene94350:intron | 45.0% | |
| TGACAAGACAGCTGAAATGG+AGG | - | chr3.2:43648580-43648599 | None:intergenic | 45.0% | |
| TGTGGGAACCTGTAATTGCA+AGG | - | chr3.2:43648225-43648244 | None:intergenic | 45.0% | |
| TTATAGAAGGGAAGAGGCAG+CGG | + | chr3.2:43650169-43650188 | MS.gene94350:intron | 45.0% | |
| TTGAGTGTAAGTGGTTGGAC+TGG | + | chr3.2:43647122-43647141 | MS.gene94350:CDS | 45.0% | |
| ! | AAAGTGCTTAAAGACTGCCC+CGG | + | chr3.2:43648051-43648070 | MS.gene94350:intron | 45.0% |
| ! | ATTTAGAACTTCGCCGGACT+TGG | - | chr3.2:43650544-43650563 | None:intergenic | 45.0% |
| ! | CTGTAGTGGGATCCTATGAA+GGG | + | chr3.2:43650218-43650237 | MS.gene94350:intron | 45.0% |
| ! | TAACGGATCGCGGAAAATAG+CGG | - | chr3.2:43649551-43649570 | None:intergenic | 45.0% |
| !! | AAAATAGCGGATAGCGTAGC+GGG | - | chr3.2:43649538-43649557 | None:intergenic | 45.0% |
| !! | CACTGGTGTTGTATGACCAA+TGG | + | chr3.2:43647595-43647614 | MS.gene94350:intron | 45.0% |
| !! | GAAAATAGCGGATAGCGTAG+CGG | - | chr3.2:43649539-43649558 | None:intergenic | 45.0% |
| !! | TATCGTACCGGCTTTCATCA+TGG | - | chr3.2:43648862-43648881 | None:intergenic | 45.0% |
| !! | TGGTGTTGTATGACCAATGG+AGG | + | chr3.2:43647598-43647617 | MS.gene94350:intron | 45.0% |
| !!! | GGGTTTTTGAAGTGTTGGCT+GGG | + | chr3.2:43647551-43647570 | MS.gene94350:intron | 45.0% |
| AAGTGCTTAAAGACTGCCCC+GGG | + | chr3.2:43648052-43648071 | MS.gene94350:intron | 50.0% | |
| AGTGGGATCCTATGAAGGGT+TGG | + | chr3.2:43650222-43650241 | MS.gene94350:intron | 50.0% | |
| CAAATCCAGCAATTCGGCAG+AGG | + | chr3.2:43648096-43648115 | MS.gene94350:intron | 50.0% | |
| CAATGCCTGAGAGTGATCGT+TGG | + | chr3.2:43650610-43650629 | MS.gene94350:CDS | 50.0% | |
| CACTCAGCTACATCATCGGT+GGG | - | chr3.2:43648363-43648382 | None:intergenic | 50.0% | |
| CTAGATACATCGGTAGCCGT+TGG | + | chr3.2:43648254-43648273 | MS.gene94350:intron | 50.0% | |
| CTCTTGTTAACGAGTGCTCC+CGG | + | chr3.2:43647922-43647941 | MS.gene94350:intron | 50.0% | |
| GGACACCAACACAACACATG+TGG | - | chr3.2:43650076-43650095 | None:intergenic | 50.0% | |
| GGAGCAACCATGATGAAAGC+CGG | + | chr3.2:43648852-43648871 | MS.gene94350:intron | 50.0% | |
| TACCTAGCTCGTGGGGTTTA+GGG | - | chr3.2:43649094-43649113 | None:intergenic | 50.0% | |
| TATAGAAGGGAAGAGGCAGC+GGG | + | chr3.2:43650170-43650189 | MS.gene94350:intron | 50.0% | |
| TCACTCAGCTACATCATCGG+TGG | - | chr3.2:43648364-43648383 | None:intergenic | 50.0% | |
| TCTTGTTAACGAGTGCTCCC+GGG | + | chr3.2:43647923-43647942 | MS.gene94350:intron | 50.0% | |
| TGAGAGGTTACCTAGCTCGT+GGG | - | chr3.2:43649102-43649121 | None:intergenic | 50.0% | |
| TGGTTTCCACATGGTCGTTC+AGG | + | chr3.2:43648623-43648642 | MS.gene94350:intron | 50.0% | |
| TGTGGGACCCTCTCAGTAAT+TGG | + | chr3.2:43648603-43648622 | MS.gene94350:intron | 50.0% | |
| TTACCTAGCTCGTGGGGTTT+AGG | - | chr3.2:43649095-43649114 | None:intergenic | 50.0% | |
| ! | GCTGTAGTGGGATCCTATGA+AGG | + | chr3.2:43650217-43650236 | MS.gene94350:intron | 50.0% |
| !! | AGATGCTTAAAGAGTGCCCC+GGG | - | chr3.2:43647943-43647962 | None:intergenic | 50.0% |
| !! | ATAGCGTAGCGGGCAAATAG+CGG | - | chr3.2:43649528-43649547 | None:intergenic | 50.0% |
| !! | CAGCAGTATAGTGGTGCTAC+CGG | - | chr3.2:43648815-43648834 | None:intergenic | 50.0% |
| !! | GAGATGCTTAAAGAGTGCCC+CGG | - | chr3.2:43647944-43647963 | None:intergenic | 50.0% |
| !! | GGTTGGACTGGTGAAATTCG+TGG | + | chr3.2:43647134-43647153 | MS.gene94350:CDS | 50.0% |
| !! | TCGTCTTGGTGGTGGTAGTT+CGG | + | chr3.2:43650680-43650699 | MS.gene94350:CDS | 50.0% |
| !!! | GGGGTTTTTGAAGTGTTGGC+TGG | + | chr3.2:43647550-43647569 | MS.gene94350:intron | 50.0% |
| ACAGCATGTGAATGCCCCGA+TGG | - | chr3.2:43650729-43650748 | None:intergenic | 55.0% | |
| AGGACGCTAGGGTTCATACC+CGG | - | chr3.2:43648073-43648092 | None:intergenic | 55.0% | |
| ATAGAAGGGAAGAGGCAGCG+GGG | + | chr3.2:43650171-43650190 | MS.gene94350:intron | 55.0% | |
| ATCCCTAAACCCCACGAGCT+AGG | + | chr3.2:43649089-43649108 | MS.gene94350:intron | 55.0% | |
| CAAGACGAGTGCAGTGCTCA+TGG | - | chr3.2:43650668-43650687 | None:intergenic | 55.0% | |
| CTGAGAGGTTACCTAGCTCG+TGG | - | chr3.2:43649103-43649122 | None:intergenic | 55.0% | |
| CTTGTTAACGAGTGCTCCCG+GGG | + | chr3.2:43647924-43647943 | MS.gene94350:intron | 55.0% | |
| GAGAGGTTACCTAGCTCGTG+GGG | - | chr3.2:43649101-43649120 | None:intergenic | 55.0% | |
| GCATCCCAACGATCACTCTC+AGG | - | chr3.2:43650618-43650637 | None:intergenic | 55.0% | |
| GCTACATCATCGGTGGGAGT+TGG | - | chr3.2:43648357-43648376 | None:intergenic | 55.0% | |
| GGTGGGAGTTGGATCGAGAT+CGG | - | chr3.2:43648346-43648365 | None:intergenic | 55.0% | |
| TAGGCACCTGAACGACCATG+TGG | - | chr3.2:43648632-43648651 | None:intergenic | 55.0% | |
| ! | CATGAGCACTGCACTCGTCT+TGG | + | chr3.2:43650666-43650685 | MS.gene94350:CDS | 55.0% |
| !! | CGTCTTGGTGGTGGTAGTTC+GGG | + | chr3.2:43650681-43650700 | MS.gene94350:CDS | 55.0% |
| !! | GTCTTGGTGGTGGTAGTTCG+GGG | + | chr3.2:43650682-43650701 | MS.gene94350:CDS | 55.0% |
| CACTGCACTCGTCTTGGTGG+TGG | + | chr3.2:43650672-43650691 | MS.gene94350:CDS | 60.0% | |
| CTCTGCCTCTGCCGAATTGC+TGG | - | chr3.2:43648104-43648123 | None:intergenic | 60.0% | |
| GACGCTAGGGTTCATACCCG+GGG | - | chr3.2:43648071-43648090 | None:intergenic | 60.0% | |
| GGACGCTAGGGTTCATACCC+GGG | - | chr3.2:43648072-43648091 | None:intergenic | 60.0% | |
| TAGAAGGGAAGAGGCAGCGG+GGG | + | chr3.2:43650172-43650191 | MS.gene94350:intron | 60.0% | |
| ! | GAGCACTGCACTCGTCTTGG+TGG | + | chr3.2:43650669-43650688 | MS.gene94350:CDS | 60.0% |
| GAAGAGGCAGCGGGGGAACC+TGG | + | chr3.2:43650179-43650198 | MS.gene94350:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 43647059 | 43650797 | 43647059 | ID=MS.gene94350 |
| chr3.2 | mRNA | 43647059 | 43650797 | 43647059 | ID=MS.gene94350.t1;Parent=MS.gene94350 |
| chr3.2 | exon | 43647059 | 43647218 | 43647059 | ID=MS.gene94350.t1.exon1;Parent=MS.gene94350.t1 |
| chr3.2 | CDS | 43647059 | 43647218 | 43647059 | ID=cds.MS.gene94350.t1;Parent=MS.gene94350.t1 |
| chr3.2 | exon | 43650514 | 43650797 | 43650514 | ID=MS.gene94350.t1.exon2;Parent=MS.gene94350.t1 |
| chr3.2 | CDS | 43650514 | 43650797 | 43650514 | ID=cds.MS.gene94350.t1;Parent=MS.gene94350.t1 |
| Gene Sequence |
| Protein sequence |
