Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94355.t1 | XP_003600054.1 | 100 | 251 | 0 | 0 | 1 | 251 | 1 | 251 | 9.10E-140 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94355.t1 | Q5M759 | 84.0 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 1.6e-121 | 436.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94355.t1 | G7IXK4 | 100.0 | 251 | 0 | 0 | 1 | 251 | 1 | 251 | 6.6e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94355 | MS.gene72906 | PPI |
| MS.gene028008 | MS.gene94355 | PPI |
| MS.gene016363 | MS.gene94355 | PPI |
| MS.gene94355 | MS.gene94059 | PPI |
| MS.gene94355 | MS.gene77803 | PPI |
| MS.gene59808 | MS.gene94355 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94355.t1 | MTR_3g051210 | 100.000 | 251 | 0 | 0 | 1 | 251 | 1 | 251 | 0.0 | 516 |
| MS.gene94355.t1 | MTR_7g033650 | 98.008 | 251 | 5 | 0 | 1 | 251 | 1 | 251 | 0.0 | 503 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94355.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 3.34e-161 | 447 |
| MS.gene94355.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 3.34e-161 | 447 |
| MS.gene94355.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 3.34e-161 | 447 |
| MS.gene94355.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 3.34e-161 | 447 |
| MS.gene94355.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 3.34e-161 | 447 |
| MS.gene94355.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 3.34e-161 | 447 |
Find 54 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGATCAATACAAGAAAT+TGG | 0.210738 | 3.2:+43699830 | MS.gene94355:CDS |
| TGGCATCGAATAAGGGGTTT+TGG | 0.249465 | 3.2:+43701171 | MS.gene94355:CDS |
| AGATCCATTGGCATCGAATA+AGG | 0.254143 | 3.2:+43701163 | MS.gene94355:CDS |
| GTTTGTAACCCTCCAATTCC+AGG | 0.370349 | 3.2:-43699795 | None:intergenic |
| AAGGAGGCTATCTTGGACTT+CGG | 0.377807 | 3.2:+43703026 | MS.gene94355:CDS |
| GATCCATTGGCATCGAATAA+GGG | 0.394041 | 3.2:+43701164 | MS.gene94355:CDS |
| AGGAGGCTATCTTGGACTTC+GGG | 0.399358 | 3.2:+43703027 | MS.gene94355:CDS |
| AAGACGGAAAACGACGGTAT+TGG | 0.400764 | 3.2:+43703249 | MS.gene94355:CDS |
| AATTCCTGTCAAAGACGAAA+TGG | 0.400844 | 3.2:-43703288 | None:intergenic |
| TGGGCAGAGCTATTGGGAAT+TGG | 0.413008 | 3.2:+43701191 | MS.gene94355:CDS |
| AAGTAGAAAGGAGGCTATCT+TGG | 0.416065 | 3.2:+43703019 | MS.gene94355:CDS |
| ATGAGAAGGAGACCTGGAAT+TGG | 0.416762 | 3.2:+43699783 | MS.gene94355:CDS |
| ATTCCTGTCAAAGACGAAAT+GGG | 0.437105 | 3.2:-43703287 | None:intergenic |
| AGAGATCAATACAAGAAATT+GGG | 0.450967 | 3.2:+43699831 | MS.gene94355:CDS |
| TGGTCTTTGTTCAGCTCAGT+TGG | 0.452013 | 3.2:-43701826 | None:intergenic |
| TCACAAATATTTCAGGTTCT+CGG | 0.456872 | 3.2:+43701751 | MS.gene94355:intron |
| TATTTCAGGTTCTCGGTAGC+GGG | 0.477130 | 3.2:+43701758 | MS.gene94355:intron |
| TCAAATTGTGGACATTTGCT+TGG | 0.478737 | 3.2:+43701421 | MS.gene94355:CDS |
| TAATGTATCTAGTGCATCAA+TGG | 0.485168 | 3.2:-43703055 | None:intergenic |
| ATATTTCAGGTTCTCGGTAG+CGG | 0.490149 | 3.2:+43701757 | MS.gene94355:intron |
| TTCAAGCTGAGAACGAAAAG+TGG | 0.490188 | 3.2:-43699901 | None:intergenic |
| GGTGATTTCTATTATGAACT+TGG | 0.493886 | 3.2:+43701212 | MS.gene94355:CDS |
| CATGAAATGTGTGCTAAAGT+TGG | 0.496026 | 3.2:+43701137 | MS.gene94355:CDS |
| AGAAGGAGACCTGGAATTGG+AGG | 0.513896 | 3.2:+43699786 | MS.gene94355:CDS |
| ATTGATCAGTCCACCGTTGA+GGG | 0.515451 | 3.2:-43701453 | None:intergenic |
| TGAAATTCTTGAACTTGCCC+AGG | 0.525315 | 3.2:+43701852 | MS.gene94355:CDS |
| GGGTTTGAAGTTATTTCTGT+TGG | 0.525591 | 3.2:+43701778 | MS.gene94355:CDS |
| GATCAGAACTGATATGATGA+AGG | 0.529766 | 3.2:+43699869 | MS.gene94355:CDS |
| TTGAAAATGAGAAGGAGACC+TGG | 0.530209 | 3.2:+43699777 | None:intergenic |
| CTCCGTTTACCTCAGGGTCA+AGG | 0.535140 | 3.2:+43702979 | MS.gene94355:intron |
| TGAAACTGTGATCTGAATGC+AGG | 0.546795 | 3.2:-43701116 | None:intergenic |
| AGCACGCAGGCAATCATCCT+CGG | 0.550043 | 3.2:-43701534 | None:intergenic |
| ATTGATGATGGCCACAAAGA+CGG | 0.551263 | 3.2:+43703233 | MS.gene94355:CDS |
| ATCCATTGGCATCGAATAAG+GGG | 0.567315 | 3.2:+43701165 | MS.gene94355:CDS |
| TTCCTGTCAAAGACGAAATG+GGG | 0.586176 | 3.2:-43703286 | None:intergenic |
| GCGTGCTATCAGTAAGCTGA+AGG | 0.586793 | 3.2:+43701550 | MS.gene94355:CDS |
| TAAAGTTGGAGTAGATCCAT+TGG | 0.590906 | 3.2:+43701151 | MS.gene94355:CDS |
| GATTGATCAGTCCACCGTTG+AGG | 0.591636 | 3.2:-43701454 | None:intergenic |
| TGACTGTCGATGAAGTAGAA+AGG | 0.593662 | 3.2:+43703007 | MS.gene94355:CDS |
| AACCCCTTATTCGATGCCAA+TGG | 0.602728 | 3.2:-43701167 | None:intergenic |
| GGACTTGCAATGATTGATGA+TGG | 0.603574 | 3.2:+43703221 | MS.gene94355:CDS |
| TCAGCTCAGTTGGAACCGAA+CGG | 0.627094 | 3.2:-43701816 | None:intergenic |
| GAAACTGTGATCTGAATGCA+GGG | 0.646444 | 3.2:-43701115 | None:intergenic |
| CAAGTTCAAGAATTTCATTG+TGG | 0.649563 | 3.2:-43701846 | None:intergenic |
| TTGATCAGTCCACCGTTGAG+GGG | 0.651882 | 3.2:-43701452 | None:intergenic |
| CTAGACAGGAGTTCAAATTG+TGG | 0.654031 | 3.2:+43701409 | MS.gene94355:intron |
| GAAGGAGACCTGGAATTGGA+GGG | 0.656202 | 3.2:+43699787 | MS.gene94355:CDS |
| TCCTGTCAAAGACGAAATGG+GGG | 0.657833 | 3.2:-43703285 | None:intergenic |
| TGATCGTGGAGTTGTTTCCG+AGG | 0.667979 | 3.2:+43701517 | MS.gene94355:CDS |
| GCTACTAGACCCCTCAACGG+TGG | 0.670205 | 3.2:+43701443 | MS.gene94355:CDS |
| GCCACAAAGACGGAAAACGA+CGG | 0.674550 | 3.2:+43703243 | MS.gene94355:CDS |
| CTGTCGATGAAGTAGAAAGG+AGG | 0.681421 | 3.2:+43703010 | MS.gene94355:CDS |
| TTGGCTACTAGACCCCTCAA+CGG | 0.700160 | 3.2:+43701440 | MS.gene94355:CDS |
| TCAGCTTACTGATAGCACGC+AGG | 0.720093 | 3.2:-43701547 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATTGATTTTTAATTC+TGG | + | chr3.2:43700005-43700024 | MS.gene94355:intron | 10.0% |
| !!! | AAAAATTGATTTTTAATTCT+GGG | + | chr3.2:43700006-43700025 | MS.gene94355:intron | 10.0% |
| !!! | CTTTATTTTATTTTTTGTTA+TGG | + | chr3.2:43702230-43702249 | MS.gene94355:intron | 10.0% |
| !! | AAATAGTAATAGTCAAAAAT+TGG | - | chr3.2:43701601-43701620 | None:intergenic | 15.0% |
| !! | ATAAAAAATAAAATCTGGAA+TGG | - | chr3.2:43701316-43701335 | None:intergenic | 15.0% |
| !! | ATAGATTGAAGATTAAATAA+TGG | - | chr3.2:43702498-43702517 | None:intergenic | 15.0% |
| !! | TAAAAATTATTGTCAAATAG+CGG | - | chr3.2:43700318-43700337 | None:intergenic | 15.0% |
| !! | TAATCATTAATTGCAAAAAA+AGG | - | chr3.2:43701041-43701060 | None:intergenic | 15.0% |
| !! | TTTATATAAATTGTTACTAG+AGG | + | chr3.2:43702437-43702456 | MS.gene94355:intron | 15.0% |
| !!! | CAATAATTTTTACTAAATAG+CGG | + | chr3.2:43700326-43700345 | MS.gene94355:intron | 15.0% |
| !!! | TTTATTTTTTGTTATGGAAA+TGG | + | chr3.2:43702236-43702255 | MS.gene94355:intron | 15.0% |
| !!! | TTTTATTTTTTGTGATTGAT+TGG | + | chr3.2:43699972-43699991 | MS.gene94355:intron | 15.0% |
| !!! | TTTTTGACTATTACTATTTA+TGG | + | chr3.2:43701602-43701621 | MS.gene94355:intron | 15.0% |
| !! | AATATCTCATTATGAAAATC+CGG | + | chr3.2:43702594-43702613 | MS.gene94355:intron | 20.0% |
| !! | ATCACAAAAAATAAAAGAGT+TGG | - | chr3.2:43699968-43699987 | None:intergenic | 20.0% |
| !! | TCACAAAAAATAAAAGAGTT+GGG | - | chr3.2:43699967-43699986 | None:intergenic | 20.0% |
| !!! | AATAGTCAAAAATTGGTTTA+AGG | - | chr3.2:43701594-43701613 | None:intergenic | 20.0% |
| !!! | ATAGTCAAAAATTGGTTTAA+GGG | - | chr3.2:43701593-43701612 | None:intergenic | 20.0% |
| ! | AAACAGTATAGTTATGGTAT+AGG | + | chr3.2:43702049-43702068 | MS.gene94355:intron | 25.0% |
| ! | AAAGATAACATCAACAAACT+AGG | - | chr3.2:43702335-43702354 | None:intergenic | 25.0% |
| ! | AAGAGATCAATACAAGAAAT+TGG | + | chr3.2:43699830-43699849 | MS.gene94355:CDS | 25.0% |
| ! | AAGATAACATCAACAAACTA+GGG | - | chr3.2:43702334-43702353 | None:intergenic | 25.0% |
| ! | AAGTAACATGTAAATATCTG+TGG | + | chr3.2:43702404-43702423 | MS.gene94355:intron | 25.0% |
| ! | AATATTAACCTCAAATTTCG+TGG | + | chr3.2:43703137-43703156 | MS.gene94355:intron | 25.0% |
| ! | AATGATGTTGGTATAATGTT+TGG | + | chr3.2:43700879-43700898 | MS.gene94355:intron | 25.0% |
| ! | ACTATTACTATTTATGGATG+TGG | + | chr3.2:43701608-43701627 | MS.gene94355:intron | 25.0% |
| ! | AGAGATCAATACAAGAAATT+GGG | + | chr3.2:43699831-43699850 | MS.gene94355:CDS | 25.0% |
| ! | ATAAGCTGAAAACAACTTAA+AGG | - | chr3.2:43702148-43702167 | None:intergenic | 25.0% |
| ! | ATGATGTTGGTATAATGTTT+GGG | + | chr3.2:43700880-43700899 | MS.gene94355:intron | 25.0% |
| ! | ATTTCTATTATGAACTTGGT+TGG | + | chr3.2:43701216-43701235 | MS.gene94355:intron | 25.0% |
| ! | CTGCAATTCATCAAATAATT+AGG | + | chr3.2:43702555-43702574 | MS.gene94355:intron | 25.0% |
| ! | GATATCAAACAGTATAGTTA+TGG | + | chr3.2:43702043-43702062 | MS.gene94355:intron | 25.0% |
| ! | GATTAAATAACGCTAATTGT+TGG | + | chr3.2:43701061-43701080 | MS.gene94355:intron | 25.0% |
| ! | TATGTGCTACATCTTAAATT+CGG | - | chr3.2:43700630-43700649 | None:intergenic | 25.0% |
| ! | TCCTGATGTATTTATAACTA+GGG | - | chr3.2:43700663-43700682 | None:intergenic | 25.0% |
| ! | TTGTTTAACAATTGCAACTA+TGG | - | chr3.2:43701273-43701292 | None:intergenic | 25.0% |
| !! | ATTTCACTCTTTTCTTAGAA+TGG | + | chr3.2:43701357-43701376 | MS.gene94355:intron | 25.0% |
| !! | TGTGTGCTTTTATATACTAT+TGG | + | chr3.2:43702772-43702791 | MS.gene94355:intron | 25.0% |
| !! | TTGGTACTAATATTTGCTTT+TGG | + | chr3.2:43702730-43702749 | MS.gene94355:intron | 25.0% |
| !!! | AGCTTAAATTTTAGAAGTTG+TGG | + | chr3.2:43700226-43700245 | MS.gene94355:intron | 25.0% |
| !!! | GTTTGTTGATTTTTAGAACT+TGG | + | chr3.2:43700091-43700110 | MS.gene94355:intron | 25.0% |
| !!! | TGGTTGGATTGATTTATTTT+AGG | + | chr3.2:43702081-43702100 | MS.gene94355:intron | 25.0% |
| AAAGAAAAAACTTGTCCGTT+CGG | + | chr3.2:43701801-43701820 | MS.gene94355:CDS | 30.0% | |
| AAATTCAAATGTGGTTGGAT+TGG | + | chr3.2:43700191-43700210 | MS.gene94355:intron | 30.0% | |
| AATTCAAATGTGGTTGGATT+GGG | + | chr3.2:43700192-43700211 | MS.gene94355:intron | 30.0% | |
| ATCTTTATAGCTTATGAGTG+TGG | + | chr3.2:43702349-43702368 | MS.gene94355:intron | 30.0% | |
| ATGTATTTATAACTAGGGCA+TGG | - | chr3.2:43700658-43700677 | None:intergenic | 30.0% | |
| ATGTGCTACATCTTAAATTC+GGG | - | chr3.2:43700629-43700648 | None:intergenic | 30.0% | |
| ATTCTGACATGCATGTATTT+CGG | + | chr3.2:43701650-43701669 | MS.gene94355:intron | 30.0% | |
| CAAGTTCAAGAATTTCATTG+TGG | - | chr3.2:43701849-43701868 | None:intergenic | 30.0% | |
| CTCCTATTAAATTCTATGTC+TGG | - | chr3.2:43700597-43700616 | None:intergenic | 30.0% | |
| CTGACATATCATAAACCAAA+CGG | + | chr3.2:43702111-43702130 | MS.gene94355:intron | 30.0% | |
| GACCAGACATAGAATTTAAT+AGG | + | chr3.2:43700592-43700611 | MS.gene94355:intron | 30.0% | |
| GGTGATTTCTATTATGAACT+TGG | + | chr3.2:43701212-43701231 | MS.gene94355:CDS | 30.0% | |
| GTCCTGATGTATTTATAACT+AGG | - | chr3.2:43700664-43700683 | None:intergenic | 30.0% | |
| TAATGTATCTAGTGCATCAA+TGG | - | chr3.2:43703058-43703077 | None:intergenic | 30.0% | |
| TAGATCAGTATATCCAAACA+AGG | - | chr3.2:43701892-43701911 | None:intergenic | 30.0% | |
| TATCCACATCATACAATTAC+AGG | - | chr3.2:43701992-43702011 | None:intergenic | 30.0% | |
| TGAACAAAACTCTATTGACA+TGG | - | chr3.2:43700924-43700943 | None:intergenic | 30.0% | |
| TGATATGTCAATTTAAGCAC+CGG | + | chr3.2:43702808-43702827 | MS.gene94355:intron | 30.0% | |
| TGATGAAAGTTTGTAGCTTT+GGG | + | chr3.2:43700138-43700157 | MS.gene94355:intron | 30.0% | |
| TGATGTGTCACAAATATTTC+AGG | + | chr3.2:43701744-43701763 | MS.gene94355:intron | 30.0% | |
| TGTGAAAATATCAGTGTTGT+GGG | + | chr3.2:43700352-43700371 | MS.gene94355:intron | 30.0% | |
| TTATGAAAATCCGGTACTAT+AGG | + | chr3.2:43702603-43702622 | MS.gene94355:intron | 30.0% | |
| TTGATGAAAGTTTGTAGCTT+TGG | + | chr3.2:43700137-43700156 | MS.gene94355:intron | 30.0% | |
| TTGCAAAATTCAAATGTGGT+TGG | + | chr3.2:43700186-43700205 | MS.gene94355:intron | 30.0% | |
| TTGTGAAAATATCAGTGTTG+TGG | + | chr3.2:43700351-43700370 | MS.gene94355:intron | 30.0% | |
| ! | AACCACATTTGAATTTTGCA+AGG | - | chr3.2:43700187-43700206 | None:intergenic | 30.0% |
| ! | AATTTGAACTCTCTTGCTAT+TGG | + | chr3.2:43702700-43702719 | MS.gene94355:intron | 30.0% |
| ! | ATTAAGTTGTTTATCCAAGC+AGG | + | chr3.2:43702307-43702326 | MS.gene94355:intron | 30.0% |
| ! | TATATACTATTGGTGTTCAG+AGG | + | chr3.2:43702782-43702801 | MS.gene94355:intron | 30.0% |
| !! | AAGATTTGTTACATGCATTC+TGG | + | chr3.2:43701700-43701719 | MS.gene94355:intron | 30.0% |
| !! | GCTGTTTTCATAAATTATCC+TGG | - | chr3.2:43702184-43702203 | None:intergenic | 30.0% |
| !! | GTTTTTGCTATGAATGATGT+TGG | + | chr3.2:43700867-43700886 | MS.gene94355:intron | 30.0% |
| !! | TCACAAATATTTCAGGTTCT+CGG | + | chr3.2:43701751-43701770 | MS.gene94355:intron | 30.0% |
| !! | TGATTTTTAATTCTGGGTGT+TGG | + | chr3.2:43700012-43700031 | MS.gene94355:intron | 30.0% |
| !!! | ATGTCAATAGAGTTTTGTTC+AGG | + | chr3.2:43700923-43700942 | MS.gene94355:intron | 30.0% |
| !!! | TGATTTTTAGAACTTGGCTT+TGG | + | chr3.2:43700097-43700116 | MS.gene94355:intron | 30.0% |
| !!! | TGTCAATAGAGTTTTGTTCA+GGG | + | chr3.2:43700924-43700943 | MS.gene94355:intron | 30.0% |
| AAAAGTCATGCAGCAAAGTT+AGG | + | chr3.2:43702461-43702480 | MS.gene94355:intron | 35.0% | |
| AATATCAGTGTTGTGGGAAA+TGG | + | chr3.2:43700358-43700377 | MS.gene94355:intron | 35.0% | |
| AATTCCTGTCAAAGACGAAA+TGG | - | chr3.2:43703291-43703310 | None:intergenic | 35.0% | |
| AGTATCCACGAAATTTGAAG+TGG | - | chr3.2:43703171-43703190 | None:intergenic | 35.0% | |
| ATACTGAACCACTATGGTAT+TGG | + | chr3.2:43703186-43703205 | MS.gene94355:intron | 35.0% | |
| ATAGTTATGGTATAGGCCTA+GGG | + | chr3.2:43702056-43702075 | MS.gene94355:intron | 35.0% | |
| ATGTTGGTATAATGTTTGGG+AGG | + | chr3.2:43700883-43700902 | MS.gene94355:intron | 35.0% | |
| ATTATGAGCTTTCTTGAGCA+TGG | + | chr3.2:43701966-43701985 | MS.gene94355:intron | 35.0% | |
| ATTCCTGTCAAAGACGAAAT+GGG | - | chr3.2:43703290-43703309 | None:intergenic | 35.0% | |
| ATTTGAGGACTTGAAACTTC+AGG | + | chr3.2:43700960-43700979 | MS.gene94355:intron | 35.0% | |
| CATGAAATGTGTGCTAAAGT+TGG | + | chr3.2:43701137-43701156 | MS.gene94355:CDS | 35.0% | |
| GATCAGAACTGATATGATGA+AGG | + | chr3.2:43699869-43699888 | MS.gene94355:CDS | 35.0% | |
| GCCCTAGTTATAAATACATC+AGG | + | chr3.2:43700659-43700678 | MS.gene94355:intron | 35.0% | |
| GTAACAAATCTTTCAGTACG+AGG | - | chr3.2:43701692-43701711 | None:intergenic | 35.0% | |
| GTCCTTGCAAAATTCAAATG+TGG | + | chr3.2:43700182-43700201 | MS.gene94355:intron | 35.0% | |
| TAAAGTTGGAGTAGATCCAT+TGG | + | chr3.2:43701151-43701170 | MS.gene94355:CDS | 35.0% | |
| TATAGTTATGGTATAGGCCT+AGG | + | chr3.2:43702055-43702074 | MS.gene94355:intron | 35.0% | |
| TCAAATTGTGGACATTTGCT+TGG | + | chr3.2:43701421-43701440 | MS.gene94355:CDS | 35.0% | |
| TCCTACAAATCATGTGACTT+TGG | + | chr3.2:43700722-43700741 | MS.gene94355:intron | 35.0% | |
| TGATTGCAATCATAACATGC+CGG | + | chr3.2:43700826-43700845 | MS.gene94355:intron | 35.0% | |
| TGTGCTACATCTTAAATTCG+GGG | - | chr3.2:43700628-43700647 | None:intergenic | 35.0% | |
| TTCACGAATGTGCTATATTG+CGG | + | chr3.2:43700400-43700419 | MS.gene94355:intron | 35.0% | |
| TTCAGTATCCACGAAATTTG+AGG | - | chr3.2:43703148-43703167 | None:intergenic | 35.0% | |
| TTTGAGGACTTGAAACTTCA+GGG | + | chr3.2:43700961-43700980 | MS.gene94355:intron | 35.0% | |
| ! | AGCACTTATTTCTCCTTGTT+TGG | + | chr3.2:43701876-43701895 | MS.gene94355:intron | 35.0% |
| ! | CAAAAATTGGTTTAAGGGCA+TGG | - | chr3.2:43701588-43701607 | None:intergenic | 35.0% |
| ! | GATGAAAGTTTGTAGCTTTG+GGG | + | chr3.2:43700139-43700158 | MS.gene94355:intron | 35.0% |
| ! | TCCAAAGTCACATGATTTGT+AGG | - | chr3.2:43700726-43700745 | None:intergenic | 35.0% |
| ! | TCTTTTCATGCTTCACAACA+AGG | - | chr3.2:43702874-43702893 | None:intergenic | 35.0% |
| !! | CTTATTTCTATAAGCTGTCC+AGG | + | chr3.2:43702163-43702182 | MS.gene94355:intron | 35.0% |
| !! | GGGTTTGAAGTTATTTCTGT+TGG | + | chr3.2:43701778-43701797 | MS.gene94355:CDS | 35.0% |
| !! | TACTATAGGAGTTTGGTGTT+AGG | + | chr3.2:43702617-43702636 | MS.gene94355:intron | 35.0% |
| !!! | ATTTGCTTTTGGTCTTGTCT+TGG | + | chr3.2:43702741-43702760 | MS.gene94355:intron | 35.0% |
| !!! | GAACTTGGCTTTGGATTTTT+TGG | + | chr3.2:43700106-43700125 | MS.gene94355:intron | 35.0% |
| !!! | GTCAATAGAGTTTTGTTCAG+GGG | + | chr3.2:43700925-43700944 | MS.gene94355:intron | 35.0% |
| AAGGAGAAATAAGTGCTACC+TGG | - | chr3.2:43701873-43701892 | None:intergenic | 40.0% | |
| AAGGCTAATCATAAGCCGTT+TGG | - | chr3.2:43702129-43702148 | None:intergenic | 40.0% | |
| AAGTAGAAAGGAGGCTATCT+TGG | + | chr3.2:43703019-43703038 | MS.gene94355:CDS | 40.0% | |
| AATCCGGTACTATAGGAGTT+TGG | + | chr3.2:43702610-43702629 | MS.gene94355:intron | 40.0% | |
| ACACCAAACTCCTATAGTAC+CGG | - | chr3.2:43702616-43702635 | None:intergenic | 40.0% | |
| ACGCTAATTGTTGGTATCAC+TGG | + | chr3.2:43701070-43701089 | MS.gene94355:intron | 40.0% | |
| AGGAGAAATAAGTGCTACCT+GGG | - | chr3.2:43701872-43701891 | None:intergenic | 40.0% | |
| AGTCTACTTCGACAATGTCA+AGG | - | chr3.2:43700556-43700575 | None:intergenic | 40.0% | |
| ATTGTCGAAGTAGACTGCAA+AGG | + | chr3.2:43700560-43700579 | MS.gene94355:intron | 40.0% | |
| CAATCACACTATGAAGCTTC+CGG | - | chr3.2:43702830-43702849 | None:intergenic | 40.0% | |
| CAGAGAAGAAAAAGTGATCG+TGG | + | chr3.2:43701503-43701522 | MS.gene94355:CDS | 40.0% | |
| CTACGTCAAGTTCATTCAAC+CGG | - | chr3.2:43700848-43700867 | None:intergenic | 40.0% | |
| CTAGACAGGAGTTCAAATTG+TGG | + | chr3.2:43701409-43701428 | MS.gene94355:intron | 40.0% | |
| CTGAACCACTTCAAATTTCG+TGG | + | chr3.2:43703163-43703182 | MS.gene94355:intron | 40.0% | |
| GAAACTGTGATCTGAATGCA+GGG | - | chr3.2:43701118-43701137 | None:intergenic | 40.0% | |
| GGACTTGCAATGATTGATGA+TGG | + | chr3.2:43703221-43703240 | MS.gene94355:CDS | 40.0% | |
| TGAAACTGTGATCTGAATGC+AGG | - | chr3.2:43701119-43701138 | None:intergenic | 40.0% | |
| TGAAATTCTTGAACTTGCCC+AGG | + | chr3.2:43701852-43701871 | MS.gene94355:CDS | 40.0% | |
| TGACTGTCGATGAAGTAGAA+AGG | + | chr3.2:43703007-43703026 | MS.gene94355:CDS | 40.0% | |
| TGGCCTGTAATTGTATGATG+TGG | + | chr3.2:43701986-43702005 | MS.gene94355:intron | 40.0% | |
| TGGCTGAAAATATCAGCTTG+TGG | + | chr3.2:43700246-43700265 | MS.gene94355:intron | 40.0% | |
| TTCAAGCTGAGAACGAAAAG+TGG | - | chr3.2:43699904-43699923 | None:intergenic | 40.0% | |
| TTCCTGTCAAAGACGAAATG+GGG | - | chr3.2:43703289-43703308 | None:intergenic | 40.0% | |
| TTGAGGACTTGAAACTTCAG+GGG | + | chr3.2:43700962-43700981 | MS.gene94355:intron | 40.0% | |
| ! | AGATCCATTGGCATCGAATA+AGG | + | chr3.2:43701163-43701182 | MS.gene94355:CDS | 40.0% |
| ! | AGATTTTGCTCGCAAACACA+AGG | + | chr3.2:43699923-43699942 | MS.gene94355:CDS | 40.0% |
| ! | ATCCATTGGCATCGAATAAG+GGG | + | chr3.2:43701165-43701184 | MS.gene94355:CDS | 40.0% |
| ! | GATCCATTGGCATCGAATAA+GGG | + | chr3.2:43701164-43701183 | MS.gene94355:CDS | 40.0% |
| ! | GGGCTTGCTTGAATAATTTG+AGG | + | chr3.2:43700945-43700964 | MS.gene94355:intron | 40.0% |
| ! | TAGAGACAACGCTTTGGTTT+CGG | + | chr3.2:43702642-43702661 | MS.gene94355:intron | 40.0% |
| ! | TGCCTTAACAATTTTCTGCG+CGG | - | chr3.2:43700522-43700541 | None:intergenic | 40.0% |
| !! | ATATTTCAGGTTCTCGGTAG+CGG | + | chr3.2:43701757-43701776 | MS.gene94355:intron | 40.0% |
| !! | ATTGATGATGGCCACAAAGA+CGG | + | chr3.2:43703233-43703252 | MS.gene94355:CDS | 40.0% |
| !! | TCTTGCTATTGGTCTTGTCT+TGG | + | chr3.2:43702711-43702730 | MS.gene94355:intron | 40.0% |
| !! | TTTGTAGCTTTGGGGATGAT+GGG | + | chr3.2:43700147-43700166 | MS.gene94355:intron | 40.0% |
| !!! | CACGATCACTTTTTCTTCTC+TGG | - | chr3.2:43701505-43701524 | None:intergenic | 40.0% |
| AACCCCTTATTCGATGCCAA+TGG | - | chr3.2:43701170-43701189 | None:intergenic | 45.0% | |
| AAGACGGAAAACGACGGTAT+TGG | + | chr3.2:43703249-43703268 | MS.gene94355:CDS | 45.0% | |
| AAGGAGGCTATCTTGGACTT+CGG | + | chr3.2:43703026-43703045 | MS.gene94355:CDS | 45.0% | |
| AATCAATCCAACCAGACCCT+AGG | - | chr3.2:43702075-43702094 | None:intergenic | 45.0% | |
| ACATCAGTATGCAGCACCAA+GGG | - | chr3.2:43701730-43701749 | None:intergenic | 45.0% | |
| ATCAGTGTTGTGGGAAATGG+TGG | + | chr3.2:43700361-43700380 | MS.gene94355:intron | 45.0% | |
| ATCCTTGACCCTGAGGTAAA+CGG | - | chr3.2:43702984-43703003 | None:intergenic | 45.0% | |
| ATCTCGTGACTCTTGAAAGC+AGG | - | chr3.2:43701948-43701967 | None:intergenic | 45.0% | |
| ATGAGAAGGAGACCTGGAAT+TGG | + | chr3.2:43699783-43699802 | MS.gene94355:CDS | 45.0% | |
| ATTGATCAGTCCACCGTTGA+GGG | - | chr3.2:43701456-43701475 | None:intergenic | 45.0% | |
| CGAATGTGCTATATTGCGGA+CGG | + | chr3.2:43700404-43700423 | MS.gene94355:intron | 45.0% | |
| CGGAAGCTTCATAGTGTGAT+TGG | + | chr3.2:43702828-43702847 | MS.gene94355:intron | 45.0% | |
| CTGTCGATGAAGTAGAAAGG+AGG | + | chr3.2:43703010-43703029 | MS.gene94355:CDS | 45.0% | |
| CTTCGACAATGTCAAGGTAG+AGG | - | chr3.2:43700550-43700569 | None:intergenic | 45.0% | |
| GACTCTTGAAAGCAGGAAAG+TGG | - | chr3.2:43701941-43701960 | None:intergenic | 45.0% | |
| GTCCGCGCAGAAAATTGTTA+AGG | + | chr3.2:43700517-43700536 | MS.gene94355:intron | 45.0% | |
| GTTTGTAACCCTCCAATTCC+AGG | - | chr3.2:43699798-43699817 | None:intergenic | 45.0% | |
| TAGCAAATAGCGCTGCTAAC+AGG | - | chr3.2:43700761-43700780 | None:intergenic | 45.0% | |
| TAGGTGTAGAGACAACGCTT+TGG | + | chr3.2:43702636-43702655 | MS.gene94355:intron | 45.0% | |
| TCCTGTCAAAGACGAAATGG+GGG | - | chr3.2:43703288-43703307 | None:intergenic | 45.0% | |
| TCGTGGATACTGAACCACTA+TGG | + | chr3.2:43703180-43703199 | MS.gene94355:intron | 45.0% | |
| TGAAAGCAGGAAAGTGGAAG+AGG | - | chr3.2:43701935-43701954 | None:intergenic | 45.0% | |
| TGGTCTTTGTTCAGCTCAGT+TGG | - | chr3.2:43701829-43701848 | None:intergenic | 45.0% | |
| ! | ATTTGCTAAGACGAGCTGCT+TGG | + | chr3.2:43701386-43701405 | MS.gene94355:intron | 45.0% |
| !! | GGCATCGAATAAGGGGTTTT+GGG | + | chr3.2:43701172-43701191 | MS.gene94355:CDS | 45.0% |
| !! | GTTTGTAGCTTTGGGGATGA+TGG | + | chr3.2:43700146-43700165 | MS.gene94355:intron | 45.0% |
| !! | TATTTCAGGTTCTCGGTAGC+GGG | + | chr3.2:43701758-43701777 | MS.gene94355:intron | 45.0% |
| !! | TGGCATCGAATAAGGGGTTT+TGG | + | chr3.2:43701171-43701190 | MS.gene94355:CDS | 45.0% |
| !!! | CACTTTTTCTTCTCTGGCGA+AGG | - | chr3.2:43701499-43701518 | None:intergenic | 45.0% |
| !!! | GGATGATGGGTTTGGTTTTG+GGG | + | chr3.2:43700160-43700179 | MS.gene94355:intron | 45.0% |
| !!! | GGGATGATGGGTTTGGTTTT+GGG | + | chr3.2:43700159-43700178 | MS.gene94355:intron | 45.0% |
| !! | AAAAATAAAATAAAGTTAAA+TGG | - | chr3.2:43702225-43702244 | None:intergenic | 5.0% |
| !! | AATTAATAAAAAATAAAATC+TGG | - | chr3.2:43701321-43701340 | None:intergenic | 5.0% |
| AGAAGGAGACCTGGAATTGG+AGG | + | chr3.2:43699786-43699805 | MS.gene94355:CDS | 50.0% | |
| AGGAGGCTATCTTGGACTTC+GGG | + | chr3.2:43703027-43703046 | MS.gene94355:CDS | 50.0% | |
| CAACAAACTAGGGTCCTGCT+TGG | - | chr3.2:43702324-43702343 | None:intergenic | 50.0% | |
| CACATCAGTATGCAGCACCA+AGG | - | chr3.2:43701731-43701750 | None:intergenic | 50.0% | |
| CGACAATGTCAAGGTAGAGG+TGG | - | chr3.2:43700547-43700566 | None:intergenic | 50.0% | |
| CTAGCACTCCGTTTACCTCA+GGG | + | chr3.2:43702973-43702992 | MS.gene94355:intron | 50.0% | |
| GAAGGAGACCTGGAATTGGA+GGG | + | chr3.2:43699787-43699806 | MS.gene94355:CDS | 50.0% | |
| GACGAAATGGGGGATACACA+CGG | - | chr3.2:43703278-43703297 | None:intergenic | 50.0% | |
| GATTGATCAGTCCACCGTTG+AGG | - | chr3.2:43701457-43701476 | None:intergenic | 50.0% | |
| GCCACAAAGACGGAAAACGA+CGG | + | chr3.2:43703243-43703262 | MS.gene94355:CDS | 50.0% | |
| GCGTGCTATCAGTAAGCTGA+AGG | + | chr3.2:43701550-43701569 | MS.gene94355:CDS | 50.0% | |
| GTCACAAATCCTTGACCCTG+AGG | - | chr3.2:43702991-43703010 | None:intergenic | 50.0% | |
| TATGGTATAGGCCTAGGGTC+TGG | + | chr3.2:43702061-43702080 | MS.gene94355:intron | 50.0% | |
| TCAGCTCAGTTGGAACCGAA+CGG | - | chr3.2:43701819-43701838 | None:intergenic | 50.0% | |
| TCAGCTTACTGATAGCACGC+AGG | - | chr3.2:43701550-43701569 | None:intergenic | 50.0% | |
| TCCCCCATTTCGTCTTTGAC+AGG | + | chr3.2:43703284-43703303 | MS.gene94355:CDS | 50.0% | |
| TGCACGAGCCAATACCATAG+TGG | - | chr3.2:43703197-43703216 | None:intergenic | 50.0% | |
| TGGGCAGAGCTATTGGGAAT+TGG | + | chr3.2:43701191-43701210 | MS.gene94355:CDS | 50.0% | |
| TTGATCAGTCCACCGTTGAG+GGG | - | chr3.2:43701455-43701474 | None:intergenic | 50.0% | |
| TTGGCTACTAGACCCCTCAA+CGG | + | chr3.2:43701440-43701459 | MS.gene94355:CDS | 50.0% | |
| ! | AGACAACGCTTTGGTTTCGG+CGG | + | chr3.2:43702645-43702664 | MS.gene94355:intron | 50.0% |
| ! | CATGCATTCTGGTTGACCCT+TGG | + | chr3.2:43701711-43701730 | MS.gene94355:intron | 50.0% |
| ! | TGATCGTGGAGTTGTTTCCG+AGG | + | chr3.2:43701517-43701536 | MS.gene94355:CDS | 50.0% |
| !! | ACCGTCGTTTTCCGTCTTTG+TGG | - | chr3.2:43703247-43703266 | None:intergenic | 50.0% |
| !! | ACTATGGTATTGGCTCGTGC+AGG | + | chr3.2:43703196-43703215 | MS.gene94355:intron | 50.0% |
| !! | AGCTTTGGGGATGATGGGTT+TGG | + | chr3.2:43700152-43700171 | MS.gene94355:intron | 50.0% |
| !!! | GGGGATGATGGGTTTGGTTT+TGG | + | chr3.2:43700158-43700177 | MS.gene94355:intron | 50.0% |
| !!! | GGGTTTTGGGCAGAGCTATT+GGG | + | chr3.2:43701185-43701204 | MS.gene94355:CDS | 50.0% |
| AGCACGCAGGCAATCATCCT+CGG | - | chr3.2:43701537-43701556 | None:intergenic | 55.0% | |
| AGCAGGAAAGTGGAAGAGGC+AGG | - | chr3.2:43701931-43701950 | None:intergenic | 55.0% | |
| CCTAGCACTCCGTTTACCTC+AGG | + | chr3.2:43702972-43702991 | MS.gene94355:intron | 55.0% | |
| CTCCGTTTACCTCAGGGTCA+AGG | + | chr3.2:43702979-43702998 | MS.gene94355:intron | 55.0% | |
| GTATAGGCCTAGGGTCTGGT+TGG | + | chr3.2:43702065-43702084 | MS.gene94355:intron | 55.0% | |
| ! | CCTGAGGTAAACGGAGTGCT+AGG | - | chr3.2:43702975-43702994 | None:intergenic | 55.0% |
| !! | ATGGTATTGGCTCGTGCAGG+AGG | + | chr3.2:43703199-43703218 | MS.gene94355:intron | 55.0% |
| !! | TGGTATTGGCTCGTGCAGGA+GGG | + | chr3.2:43703200-43703219 | MS.gene94355:intron | 55.0% |
| !!! | GGGGTTTTGGGCAGAGCTAT+TGG | + | chr3.2:43701184-43701203 | MS.gene94355:CDS | 55.0% |
| GACGAGCTGCTTGGCTAGAC+AGG | + | chr3.2:43701395-43701414 | MS.gene94355:intron | 60.0% | |
| GCTACTAGACCCCTCAACGG+TGG | + | chr3.2:43701443-43701462 | MS.gene94355:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 43699783 | 43703322 | 43699783 | ID=MS.gene94355 |
| chr3.2 | mRNA | 43699783 | 43703322 | 43699783 | ID=MS.gene94355.t1;Parent=MS.gene94355 |
| chr3.2 | exon | 43699783 | 43699944 | 43699783 | ID=MS.gene94355.t1.exon1;Parent=MS.gene94355.t1 |
| chr3.2 | CDS | 43699783 | 43699944 | 43699783 | ID=cds.MS.gene94355.t1;Parent=MS.gene94355.t1 |
| chr3.2 | exon | 43701098 | 43701233 | 43701098 | ID=MS.gene94355.t1.exon2;Parent=MS.gene94355.t1 |
| chr3.2 | CDS | 43701098 | 43701233 | 43701098 | ID=cds.MS.gene94355.t1;Parent=MS.gene94355.t1 |
| chr3.2 | exon | 43701417 | 43701571 | 43701417 | ID=MS.gene94355.t1.exon3;Parent=MS.gene94355.t1 |
| chr3.2 | CDS | 43701417 | 43701571 | 43701417 | ID=cds.MS.gene94355.t1;Parent=MS.gene94355.t1 |
| chr3.2 | exon | 43701766 | 43701873 | 43701766 | ID=MS.gene94355.t1.exon4;Parent=MS.gene94355.t1 |
| chr3.2 | CDS | 43701766 | 43701873 | 43701766 | ID=cds.MS.gene94355.t1;Parent=MS.gene94355.t1 |
| chr3.2 | exon | 43702994 | 43703083 | 43702994 | ID=MS.gene94355.t1.exon5;Parent=MS.gene94355.t1 |
| chr3.2 | CDS | 43702994 | 43703083 | 43702994 | ID=cds.MS.gene94355.t1;Parent=MS.gene94355.t1 |
| chr3.2 | exon | 43703218 | 43703322 | 43703218 | ID=MS.gene94355.t1.exon6;Parent=MS.gene94355.t1 |
| chr3.2 | CDS | 43703218 | 43703322 | 43703218 | ID=cds.MS.gene94355.t1;Parent=MS.gene94355.t1 |
| Gene Sequence |
| Protein sequence |
