Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94484.t1 | XP_013464521.1 | 99 | 294 | 3 | 0 | 1 | 294 | 1 | 294 | 3.90E-166 | 594 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94484.t1 | Q9SYM2 | 50.5 | 295 | 131 | 5 | 1 | 286 | 1 | 289 | 3.2e-68 | 260.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94484.t1 | A0A072VAB5 | 99.0 | 294 | 3 | 0 | 1 | 294 | 1 | 294 | 2.8e-166 | 594.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene94484.t1 | TF | DBB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054412 | MS.gene94484 | 0.813728 | 2.21E-51 | -1.69E-46 |
| MS.gene058551 | MS.gene94484 | 0.837037 | 6.58E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94484.t1 | MTR_2g073370 | 98.980 | 294 | 3 | 0 | 1 | 294 | 1 | 294 | 0.0 | 612 |
| MS.gene94484.t1 | MTR_4g067320 | 60.550 | 109 | 43 | 0 | 1 | 109 | 1 | 109 | 5.54e-43 | 147 |
| MS.gene94484.t1 | MTR_4g067320 | 60.550 | 109 | 43 | 0 | 1 | 109 | 1 | 109 | 5.62e-43 | 147 |
| MS.gene94484.t1 | MTR_2g099010 | 40.104 | 192 | 80 | 3 | 1 | 192 | 1 | 157 | 2.39e-42 | 146 |
| MS.gene94484.t1 | MTR_2g099010 | 40.104 | 192 | 80 | 3 | 1 | 192 | 1 | 157 | 2.70e-42 | 145 |
| MS.gene94484.t1 | MTR_3g117320 | 50.685 | 146 | 71 | 1 | 1 | 145 | 1 | 146 | 6.64e-41 | 142 |
| MS.gene94484.t1 | MTR_4g071200 | 54.717 | 106 | 47 | 1 | 1 | 105 | 1 | 106 | 8.79e-36 | 128 |
| MS.gene94484.t1 | MTR_3g113070 | 54.717 | 106 | 46 | 1 | 1 | 104 | 1 | 106 | 1.03e-35 | 128 |
| MS.gene94484.t1 | MTR_1g023260 | 54.286 | 105 | 47 | 1 | 1 | 104 | 1 | 105 | 1.39e-35 | 129 |
| MS.gene94484.t1 | MTR_1g023260 | 54.286 | 105 | 47 | 1 | 1 | 104 | 1 | 105 | 3.71e-35 | 125 |
| MS.gene94484.t1 | MTR_5g021580 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.51e-26 | 103 |
| MS.gene94484.t1 | MTR_5g021580 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.73e-26 | 103 |
| MS.gene94484.t1 | MTR_1g013450 | 41.667 | 96 | 47 | 1 | 5 | 100 | 6 | 92 | 1.00e-18 | 85.1 |
| MS.gene94484.t1 | MTR_3g105710 | 44.792 | 96 | 44 | 1 | 5 | 100 | 6 | 92 | 1.62e-18 | 84.0 |
| MS.gene94484.t1 | MTR_7g018170 | 43.478 | 92 | 43 | 1 | 5 | 96 | 26 | 108 | 1.80e-17 | 82.0 |
| MS.gene94484.t1 | MTR_4g128930 | 38.043 | 92 | 48 | 1 | 5 | 96 | 22 | 104 | 1.71e-14 | 73.6 |
| MS.gene94484.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 2.98e-11 | 63.9 |
| MS.gene94484.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 4.95e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94484.t1 | AT1G78600 | 52.797 | 286 | 113 | 4 | 1 | 273 | 1 | 277 | 7.88e-94 | 280 |
| MS.gene94484.t1 | AT1G78600 | 48.693 | 306 | 115 | 5 | 1 | 273 | 1 | 297 | 1.73e-91 | 274 |
| MS.gene94484.t1 | AT1G06040 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 1.78e-46 | 154 |
| MS.gene94484.t1 | AT1G06040 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 6.85e-46 | 155 |
| MS.gene94484.t1 | AT2G31380 | 61.468 | 109 | 42 | 0 | 1 | 109 | 1 | 109 | 2.35e-42 | 146 |
| MS.gene94484.t1 | AT4G10240 | 49.701 | 167 | 62 | 5 | 1 | 161 | 1 | 151 | 8.49e-41 | 139 |
| MS.gene94484.t1 | AT1G75540 | 40.090 | 222 | 114 | 6 | 1 | 211 | 1 | 214 | 5.01e-36 | 132 |
| MS.gene94484.t1 | AT4G39070 | 49.640 | 139 | 68 | 2 | 1 | 138 | 1 | 138 | 1.89e-35 | 128 |
| MS.gene94484.t1 | AT2G21320 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.64e-26 | 102 |
| MS.gene94484.t1 | AT4G38960 | 40.580 | 138 | 78 | 3 | 1 | 138 | 1 | 134 | 3.17e-26 | 102 |
| MS.gene94484.t1 | AT4G38960 | 40.580 | 138 | 78 | 3 | 1 | 138 | 1 | 134 | 3.17e-26 | 102 |
| MS.gene94484.t1 | AT5G15850 | 42.857 | 98 | 47 | 1 | 5 | 102 | 12 | 100 | 3.08e-18 | 84.0 |
| MS.gene94484.t1 | AT2G24790 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 9.71e-18 | 82.0 |
| MS.gene94484.t1 | AT5G24930 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 1.01e-17 | 82.8 |
| MS.gene94484.t1 | AT4G38960 | 30.939 | 181 | 78 | 4 | 1 | 138 | 1 | 177 | 1.27e-17 | 80.5 |
| MS.gene94484.t1 | AT3G02380 | 43.011 | 93 | 44 | 1 | 5 | 97 | 16 | 99 | 1.97e-17 | 81.6 |
| MS.gene94484.t1 | AT2G24790 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 2.88e-17 | 79.3 |
| MS.gene94484.t1 | AT5G15840 | 37.755 | 98 | 52 | 1 | 5 | 102 | 20 | 108 | 5.34e-16 | 77.8 |
| MS.gene94484.t1 | AT5G15840 | 39.785 | 93 | 47 | 1 | 5 | 97 | 20 | 103 | 1.13e-15 | 75.9 |
| MS.gene94484.t1 | AT2G47890 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 1.07e-12 | 67.8 |
| MS.gene94484.t1 | AT2G47890 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 1.13e-12 | 67.4 |
| MS.gene94484.t1 | AT2G47890 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 3.20e-12 | 65.5 |
| MS.gene94484.t1 | AT5G57660 | 34.783 | 92 | 47 | 2 | 5 | 96 | 22 | 100 | 3.05e-11 | 63.5 |
| MS.gene94484.t1 | AT4G38960 | 33.981 | 103 | 64 | 3 | 36 | 138 | 3 | 101 | 6.08e-11 | 60.1 |
| MS.gene94484.t1 | AT4G38960 | 33.981 | 103 | 64 | 3 | 36 | 138 | 3 | 101 | 6.08e-11 | 60.1 |
Find 60 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCATTGGATCTTAAAAT+AGG | 0.258790 | 2.1:+25122654 | None:intergenic |
| CCACCAGCCAAGGTGTCTTA+TGG | 0.275750 | 2.1:-25123519 | MS.gene94484:CDS |
| CCTACCGAAGCCGGAGGATT+TGG | 0.277213 | 2.1:-25123549 | MS.gene94484:CDS |
| GTATTCCATTTCCTCTTCAT+TGG | 0.304492 | 2.1:+25122641 | None:intergenic |
| AATTCGTTGAAGACAGATTC+TGG | 0.304552 | 2.1:-25123657 | MS.gene94484:CDS |
| CGATAATGCTCTATTTGTTC+CGG | 0.320546 | 2.1:-25122511 | MS.gene94484:CDS |
| CTACAGCTTCGGGGCTAAAC+TGG | 0.326015 | 2.1:-25122557 | MS.gene94484:CDS |
| TACCATGATCAGTAGCTTCT+AGG | 0.347736 | 2.1:+25123688 | None:intergenic |
| CCATCACCACCTACAGCTTC+GGG | 0.354633 | 2.1:-25122567 | MS.gene94484:CDS |
| CCCATCACCACCTACAGCTT+CGG | 0.391074 | 2.1:-25122568 | MS.gene94484:CDS |
| AAGATCCAATGAAGAGGAAA+TGG | 0.393956 | 2.1:-25122646 | MS.gene94484:CDS |
| GGAACTGTCCAAGACGAATC+TGG | 0.395347 | 2.1:+25122597 | None:intergenic |
| ATCTGTCTTCAACGAATTTG+AGG | 0.404754 | 2.1:+25123662 | None:intergenic |
| TGATGAAGCTGCTTTGTGTT+GGG | 0.412693 | 2.1:-25125051 | MS.gene94484:CDS |
| ACCTGACAAATATCACATTT+AGG | 0.415653 | 2.1:+25124945 | None:intergenic |
| ATCTCCAAATCCTCCGGCTT+CGG | 0.419987 | 2.1:+25123545 | None:intergenic |
| ATCTTCTTCTGTCTCGAGAA+AGG | 0.428233 | 2.1:-25123613 | MS.gene94484:CDS |
| GCTCTATTTGTTCCGGACAT+AGG | 0.432303 | 2.1:-25122504 | MS.gene94484:CDS |
| TAAATCTTTCAGGAAGCATT+CGG | 0.445968 | 2.1:-25123831 | MS.gene94484:intron |
| GCCTAAATGTGATATTTGTC+AGG | 0.459129 | 2.1:-25124946 | MS.gene94484:intron |
| CTGATGAAGCTGCTTTGTGT+TGG | 0.463397 | 2.1:-25125052 | MS.gene94484:CDS |
| CCCGAAGCTGTAGGTGGTGA+TGG | 0.475557 | 2.1:+25122567 | None:intergenic |
| CACTGCAAATGCATTTGTCT+CGG | 0.482317 | 2.1:-25123748 | MS.gene94484:CDS |
| CCAAATTAATGATGATTTCG+CGG | 0.484903 | 2.1:+25122435 | None:intergenic |
| TATGGTGGTGGTTCTAACTC+TGG | 0.487845 | 2.1:-25123501 | MS.gene94484:CDS |
| GAAATGTTGCCTACCGAAGC+CGG | 0.489819 | 2.1:-25123558 | MS.gene94484:CDS |
| TGGATGGATCATCAAATTCA+AGG | 0.498918 | 2.1:-25123410 | MS.gene94484:CDS |
| CAGTCAGAATTATAACTACA+TGG | 0.503150 | 2.1:-25123430 | MS.gene94484:CDS |
| GCCAAGGTGTCTTATGGTGG+TGG | 0.508324 | 2.1:-25123513 | MS.gene94484:CDS |
| CCACCATAAGACACCTTGGC+TGG | 0.515474 | 2.1:+25123516 | None:intergenic |
| TGGAAAATCTCCAAATCCTC+CGG | 0.517904 | 2.1:+25123539 | None:intergenic |
| CAGAATTATAACTACATGGA+TGG | 0.518101 | 2.1:-25123426 | MS.gene94484:CDS |
| TGAGAAGAAGAAGCAGATAG+AGG | 0.527824 | 2.1:+25124972 | None:intergenic |
| ACCGTGTTCCAGATTCGTCT+TGG | 0.527866 | 2.1:-25122605 | MS.gene94484:CDS |
| ACTGCAAATGCATTTGTCTC+GGG | 0.534296 | 2.1:-25123747 | MS.gene94484:CDS |
| TCATTGTACTCAGATGATTG+AGG | 0.549321 | 2.1:+25123579 | None:intergenic |
| CTTCTCACCGGTGTAAAAGT+CGG | 0.551046 | 2.1:-25123711 | MS.gene94484:CDS |
| GGCCTAGAAGCTACTGATCA+TGG | 0.554246 | 2.1:-25123690 | MS.gene94484:CDS |
| CCGAAGCTGTAGGTGGTGAT+GGG | 0.554827 | 2.1:+25122568 | None:intergenic |
| AATGGAATACGACGACTACA+TGG | 0.559471 | 2.1:-25122628 | MS.gene94484:CDS |
| CAGTTTAGCCCCGAAGCTGT+AGG | 0.563024 | 2.1:+25122558 | None:intergenic |
| CATCAAAGGTTTCTTCTCAC+CGG | 0.568029 | 2.1:-25123723 | MS.gene94484:CDS |
| ATGCTAGTAAAGCCTATGTC+CGG | 0.569585 | 2.1:+25122492 | None:intergenic |
| CCAGCCAAGGTGTCTTATGG+TGG | 0.576805 | 2.1:-25123516 | MS.gene94484:CDS |
| CATTTGTCTCGGGACATCAA+AGG | 0.579671 | 2.1:-25123737 | MS.gene94484:CDS |
| CCAAATCCTCCGGCTTCGGT+AGG | 0.580489 | 2.1:+25123549 | None:intergenic |
| ACCACCACCATAAGACACCT+TGG | 0.592536 | 2.1:+25123512 | None:intergenic |
| TTGTGAAGGTGCTGAAGCTA+AGG | 0.593143 | 2.1:-25125087 | MS.gene94484:CDS |
| CCATAAGACACCTTGGCTGG+TGG | 0.594137 | 2.1:+25123519 | None:intergenic |
| GGATGGATCATCAAATTCAA+GGG | 0.601507 | 2.1:-25123409 | MS.gene94484:intron |
| CATTATCGAATGAATACCGA+GGG | 0.607602 | 2.1:+25122526 | None:intergenic |
| ATTCAGTGTAATGTTTGTGA+AGG | 0.627076 | 2.1:-25125101 | MS.gene94484:CDS |
| TTTAGCCCCGAAGCTGTAGG+TGG | 0.663191 | 2.1:+25122561 | None:intergenic |
| TCCAAGACGAATCTGGAACA+CGG | 0.671574 | 2.1:+25122604 | None:intergenic |
| GTAGGTGGTGATGGGATCTG+AGG | 0.674067 | 2.1:+25122576 | None:intergenic |
| CATCACCACCTACAGCTTCG+GGG | 0.682711 | 2.1:-25122566 | MS.gene94484:CDS |
| GAGTTTATGCAGGCTGACAG+TGG | 0.687400 | 2.1:-25122699 | MS.gene94484:intron |
| GCATTATCGAATGAATACCG+AGG | 0.703310 | 2.1:+25122525 | None:intergenic |
| ATGTTGCCTACCGAAGCCGG+AGG | 0.732134 | 2.1:-25123555 | MS.gene94484:CDS |
| ACTCTGGAAACATGTCACAG+TGG | 0.763112 | 2.1:-25123485 | MS.gene94484:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTCAAAAATATAAATAAA+AGG | + | chr2.1:25122942-25122961 | None:intergenic | 10.0% |
| !!! | GATTTTTTTTATTTGATATA+AGG | - | chr2.1:25122653-25122672 | MS.gene94484:CDS | 10.0% |
| !!! | TTTTTATTGATTTATTTGAA+TGG | - | chr2.1:25122693-25122712 | MS.gene94484:intron | 10.0% |
| !! | CAAATAGAAAAAAAAATTGA+GGG | + | chr2.1:25124188-25124207 | None:intergenic | 15.0% |
| !! | CTAAAACAATTAAAAACTAA+AGG | + | chr2.1:25122907-25122926 | None:intergenic | 15.0% |
| !! | TCATAAAATCTTATCATTTA+AGG | - | chr2.1:25123186-25123205 | MS.gene94484:intron | 15.0% |
| !! | TTAGAAACAACTAAAATATT+TGG | - | chr2.1:25123035-25123054 | MS.gene94484:intron | 15.0% |
| !!! | GAAATCTATAATTTTGTATA+GGG | - | chr2.1:25123080-25123099 | MS.gene94484:intron | 15.0% |
| !!! | TATTGATACTTTACAATTTT+AGG | - | chr2.1:25122867-25122886 | MS.gene94484:intron | 15.0% |
| !!! | TGAAATCTATAATTTTGTAT+AGG | - | chr2.1:25123079-25123098 | MS.gene94484:intron | 15.0% |
| !!! | TTTTAATTGTTTTAGAAAGA+GGG | - | chr2.1:25122912-25122931 | MS.gene94484:intron | 15.0% |
| !!! | TTTTTAATATTTATTTGGAG+TGG | - | chr2.1:25122720-25122739 | MS.gene94484:intron | 15.0% |
| !!! | TTTTTAATTGTTTTAGAAAG+AGG | - | chr2.1:25122911-25122930 | MS.gene94484:intron | 15.0% |
| !! | AAAAATTACTACTATTCTGA+GGG | + | chr2.1:25125087-25125106 | None:intergenic | 20.0% |
| !! | CCAAATAGAAAAAAAAATTG+AGG | + | chr2.1:25124189-25124208 | None:intergenic | 20.0% |
| !! | TATGAAAAATCGTATATACA+AGG | + | chr2.1:25123171-25123190 | None:intergenic | 20.0% |
| !! | TTCATGAAAAAGTAAAAGTT+TGG | - | chr2.1:25122748-25122767 | MS.gene94484:intron | 20.0% |
| !!! | AATAAGTTTAAAACAGCTTA+TGG | - | chr2.1:25124679-25124698 | MS.gene94484:intron | 20.0% |
| !!! | CCTCAATTTTTTTTTCTATT+TGG | - | chr2.1:25124186-25124205 | MS.gene94484:intron | 20.0% |
| !!! | TGAAATATTTGACTTTTGAA+AGG | + | chr2.1:25123138-25123157 | None:intergenic | 20.0% |
| !!! | TTGGTAATATTTTGAGAAAA+TGG | - | chr2.1:25123457-25123476 | MS.gene94484:CDS | 20.0% |
| !!! | TTGTGTTATTTAAATCTTTC+AGG | - | chr2.1:25123706-25123725 | MS.gene94484:CDS | 20.0% |
| !!! | TTTAATTGTTTTAGAAAGAG+GGG | - | chr2.1:25122913-25122932 | MS.gene94484:intron | 20.0% |
| !!! | TTTTAAGTGCTTTTTAACTA+TGG | - | chr2.1:25124406-25124425 | MS.gene94484:intron | 20.0% |
| !!! | TTTTATTTGATATAAGGTTG+TGG | - | chr2.1:25122659-25122678 | MS.gene94484:CDS | 20.0% |
| !!! | TTTTTTTTCTATTTGGATCA+TGG | - | chr2.1:25124193-25124212 | MS.gene94484:intron | 20.0% |
| ! | AATGCAGAAATATTAAGAAC+TGG | - | chr2.1:25124328-25124347 | MS.gene94484:intron | 25.0% |
| ! | ATGAATGTTGAAAGTAGTAA+AGG | - | chr2.1:25124492-25124511 | MS.gene94484:intron | 25.0% |
| ! | CTAAATATCATAGACCAAAA+GGG | + | chr2.1:25123248-25123267 | None:intergenic | 25.0% |
| ! | GAAAAATTACTACTATTCTG+AGG | + | chr2.1:25125088-25125107 | None:intergenic | 25.0% |
| ! | GGACAAATAACAAATTAACA+AGG | + | chr2.1:25123662-25123681 | None:intergenic | 25.0% |
| ! | TCTTCATTGGATCTTAAAAT+AGG | + | chr2.1:25124896-25124915 | None:intergenic | 25.0% |
| ! | TTAAAACGTTTATCCAAACA+AGG | + | chr2.1:25124548-25124567 | None:intergenic | 25.0% |
| ! | TTAGTTCCAGAATCATATAA+AGG | + | chr2.1:25122997-25123016 | None:intergenic | 25.0% |
| ! | TTATATTCAAGTGCTTATGT+CGG | - | chr2.1:25124739-25124758 | MS.gene94484:intron | 25.0% |
| ! | TTGAAACCTTTATATGATTC+TGG | - | chr2.1:25122988-25123007 | MS.gene94484:intron | 25.0% |
| ! | TTGAAAGGAATAATTTCTTC+TGG | + | chr2.1:25123123-25123142 | None:intergenic | 25.0% |
| !! | AAATCCTTTTCCTTGAATAT+GGG | - | chr2.1:25123382-25123401 | MS.gene94484:intron | 25.0% |
| !! | TGGACAATTGATGAATTTTT+CGG | - | chr2.1:25124082-25124101 | MS.gene94484:intron | 25.0% |
| !!! | TATTTTAAGATCCAATGAAG+AGG | - | chr2.1:25124895-25124914 | MS.gene94484:intron | 25.0% |
| !!! | TGTTAATTTGTTATTTGTCC+TGG | - | chr2.1:25123662-25123681 | MS.gene94484:CDS | 25.0% |
| ACCTGACAAATATCACATTT+AGG | + | chr2.1:25122605-25122624 | None:intergenic | 30.0% | |
| ATTCAGTGTAATGTTTGTGA+AGG | - | chr2.1:25122446-25122465 | MS.gene94484:CDS | 30.0% | |
| CAGAATTATAACTACATGGA+TGG | - | chr2.1:25124121-25124140 | MS.gene94484:intron | 30.0% | |
| CAGTCAGAATTATAACTACA+TGG | - | chr2.1:25124117-25124136 | MS.gene94484:intron | 30.0% | |
| CTCAACAAAAATGTTGACAA+TGG | + | chr2.1:25123633-25123652 | None:intergenic | 30.0% | |
| CTGCATTTACAATGTACATT+AGG | + | chr2.1:25124315-25124334 | None:intergenic | 30.0% | |
| GCTAAATATCATAGACCAAA+AGG | + | chr2.1:25123249-25123268 | None:intergenic | 30.0% | |
| GTTCAAAACTATTTCCTTGT+TGG | - | chr2.1:25123296-25123315 | MS.gene94484:intron | 30.0% | |
| TCAAATAAGCCAATTCAAAC+AGG | - | chr2.1:25124771-25124790 | MS.gene94484:intron | 30.0% | |
| TGTGAACATTGTCATATGAT+TGG | - | chr2.1:25124268-25124287 | MS.gene94484:intron | 30.0% | |
| TTCTATGACAAGTTAGAAAG+TGG | - | chr2.1:25123347-25123366 | MS.gene94484:intron | 30.0% | |
| TTTATGGTTGAATGCTTATG+CGG | - | chr2.1:25124815-25124834 | MS.gene94484:intron | 30.0% | |
| ! | AGTTTGGTATGATCAAGTTT+TGG | - | chr2.1:25122764-25122783 | MS.gene94484:intron | 30.0% |
| ! | CAAATCCTTTTCCTTGAATA+TGG | - | chr2.1:25123381-25123400 | MS.gene94484:intron | 30.0% |
| ! | CATTGTCAACATTTTTGTTG+AGG | - | chr2.1:25123631-25123650 | MS.gene94484:CDS | 30.0% |
| ! | GACAGAAGAAGATTTTGTAT+CGG | + | chr2.1:25123927-25123946 | None:intergenic | 30.0% |
| ! | TATAAGGTTGTGGATTAAAG+AGG | - | chr2.1:25122669-25122688 | MS.gene94484:CDS | 30.0% |
| ! | TTTTCTATCTTCTCTGTTCA+TGG | - | chr2.1:25124239-25124258 | MS.gene94484:intron | 30.0% |
| !! | AAGCTAATAGTTGTTTTCAC+AGG | - | chr2.1:25124635-25124654 | MS.gene94484:intron | 30.0% |
| !! | GTATGATCAAGTTTTGGTAT+TGG | - | chr2.1:25122770-25122789 | MS.gene94484:intron | 30.0% |
| !! | TAAATCTTTCAGGAAGCATT+CGG | - | chr2.1:25123716-25123735 | MS.gene94484:CDS | 30.0% |
| AAGATCCAATGAAGAGGAAA+TGG | - | chr2.1:25124901-25124920 | MS.gene94484:intron | 35.0% | |
| AAGTTCTTTCAAACTGAACC+AGG | + | chr2.1:25123683-25123702 | None:intergenic | 35.0% | |
| AATTCGTTGAAGACAGATTC+TGG | - | chr2.1:25123890-25123909 | MS.gene94484:intron | 35.0% | |
| AGAGAAATCGGAACTAACAT+TGG | - | chr2.1:25123424-25123443 | MS.gene94484:CDS | 35.0% | |
| AGTAGCAGTATATCCTTGTT+TGG | - | chr2.1:25124532-25124551 | MS.gene94484:intron | 35.0% | |
| AGTGCTATATAGGTTTCTTG+TGG | - | chr2.1:25123545-25123564 | MS.gene94484:CDS | 35.0% | |
| ATAGGTTTCTTGTGGTTGTA+TGG | - | chr2.1:25123553-25123572 | MS.gene94484:CDS | 35.0% | |
| ATCTGTCTTCAACGAATTTG+AGG | + | chr2.1:25123888-25123907 | None:intergenic | 35.0% | |
| ATTGGATCACTGACAAAGAT+TGG | - | chr2.1:25124286-25124305 | MS.gene94484:intron | 35.0% | |
| CAAAACTATTTCCTTGTTGG+TGG | - | chr2.1:25123299-25123318 | MS.gene94484:intron | 35.0% | |
| CATTATCGAATGAATACCGA+GGG | + | chr2.1:25125024-25125043 | None:intergenic | 35.0% | |
| CGATAATGCTCTATTTGTTC+CGG | - | chr2.1:25125036-25125055 | MS.gene94484:CDS | 35.0% | |
| GCCTAAATGTGATATTTGTC+AGG | - | chr2.1:25122601-25122620 | MS.gene94484:CDS | 35.0% | |
| GGATGGATCATCAAATTCAA+GGG | - | chr2.1:25124138-25124157 | MS.gene94484:intron | 35.0% | |
| GTATTCCATTTCCTCTTCAT+TGG | + | chr2.1:25124909-25124928 | None:intergenic | 35.0% | |
| TAACATTGGAACGTCAACAT+TGG | - | chr2.1:25123438-25123457 | MS.gene94484:CDS | 35.0% | |
| TACTCCCATATTCAAGGAAA+AGG | + | chr2.1:25123389-25123408 | None:intergenic | 35.0% | |
| TCATTGTACTCAGATGATTG+AGG | + | chr2.1:25123971-25123990 | None:intergenic | 35.0% | |
| TGGATGGATCATCAAATTCA+AGG | - | chr2.1:25124137-25124156 | MS.gene94484:intron | 35.0% | |
| ! | AATGAATACCGAGGGTTTTT+CGG | + | chr2.1:25125016-25125035 | None:intergenic | 35.0% |
| ! | CTAAAGTGTCAGTGCTATAT+AGG | - | chr2.1:25123535-25123554 | MS.gene94484:CDS | 35.0% |
| ! | GGTCCTTAAATTTTGTCTAG+AGG | - | chr2.1:25123207-25123226 | MS.gene94484:intron | 35.0% |
| ! | TCTAACTTGTCATAGAAGCA+AGG | + | chr2.1:25123344-25123363 | None:intergenic | 35.0% |
| AATCGCTTAACACTGCAGTA+AGG | + | chr2.1:25124797-25124816 | None:intergenic | 40.0% | |
| AATGGAATACGACGACTACA+TGG | - | chr2.1:25124919-25124938 | MS.gene94484:intron | 40.0% | |
| ACTGCAAATGCATTTGTCTC+GGG | - | chr2.1:25123800-25123819 | MS.gene94484:CDS | 40.0% | |
| ATCTTCTTCTGTCTCGAGAA+AGG | - | chr2.1:25123934-25123953 | MS.gene94484:intron | 40.0% | |
| ATGCTAGTAAAGCCTATGTC+CGG | + | chr2.1:25125058-25125077 | None:intergenic | 40.0% | |
| CACTGCAAATGCATTTGTCT+CGG | - | chr2.1:25123799-25123818 | MS.gene94484:CDS | 40.0% | |
| CATCAAAGGTTTCTTCTCAC+CGG | - | chr2.1:25123824-25123843 | MS.gene94484:intron | 40.0% | |
| CTGCAGTGTTAAGCGATTTA+TGG | - | chr2.1:25124799-25124818 | MS.gene94484:intron | 40.0% | |
| GCAAGATACTCCCATATTCA+AGG | + | chr2.1:25123395-25123414 | None:intergenic | 40.0% | |
| GCATTATCGAATGAATACCG+AGG | + | chr2.1:25125025-25125044 | None:intergenic | 40.0% | |
| GCGCCTCTAGACAAAATTTA+AGG | + | chr2.1:25123213-25123232 | None:intergenic | 40.0% | |
| TACCATGATCAGTAGCTTCT+AGG | + | chr2.1:25123862-25123881 | None:intergenic | 40.0% | |
| TACTGTTACTACCACCAACA+AGG | + | chr2.1:25123313-25123332 | None:intergenic | 40.0% | |
| TCCTTCTGATGAGTTTATGC+AGG | - | chr2.1:25124838-25124857 | MS.gene94484:intron | 40.0% | |
| TGAGAAGAAGAAGCAGATAG+AGG | + | chr2.1:25122578-25122597 | None:intergenic | 40.0% | |
| TGCTTGACACACAGAGAAAT+CGG | - | chr2.1:25123412-25123431 | MS.gene94484:CDS | 40.0% | |
| TGGAAAATCTCCAAATCCTC+CGG | + | chr2.1:25124011-25124030 | None:intergenic | 40.0% | |
| ! | TGATGAAGCTGCTTTGTGTT+GGG | - | chr2.1:25122496-25122515 | MS.gene94484:CDS | 40.0% |
| !!! | CGGCTATTTCTTTTGTCTAG+AGG | - | chr2.1:25123736-25123755 | MS.gene94484:CDS | 40.0% |
| CATTTGTCTCGGGACATCAA+AGG | - | chr2.1:25123810-25123829 | MS.gene94484:CDS | 45.0% | |
| CTTCTCACCGGTGTAAAAGT+CGG | - | chr2.1:25123836-25123855 | MS.gene94484:intron | 45.0% | |
| GCAGTAAGGCCTGTTTGAAT+TGG | + | chr2.1:25124783-25124802 | None:intergenic | 45.0% | |
| GCCTGCATAAACTCATCAGA+AGG | + | chr2.1:25124842-25124861 | None:intergenic | 45.0% | |
| GCTCTATTTGTTCCGGACAT+AGG | - | chr2.1:25125043-25125062 | MS.gene94484:CDS | 45.0% | |
| TAAACTGGCCGAAAAACCCT+CGG | - | chr2.1:25125005-25125024 | MS.gene94484:CDS | 45.0% | |
| ! | ACTCTGGAAACATGTCACAG+TGG | - | chr2.1:25124062-25124081 | MS.gene94484:intron | 45.0% |
| ! | CTGATGAAGCTGCTTTGTGT+TGG | - | chr2.1:25122495-25122514 | MS.gene94484:CDS | 45.0% |
| ! | GCTCGTTAGCATTTCCCTTT+TGG | - | chr2.1:25123231-25123250 | MS.gene94484:intron | 45.0% |
| ! | TCCAAGACGAATCTGGAACA+CGG | + | chr2.1:25124946-25124965 | None:intergenic | 45.0% |
| !! | TATGGTGGTGGTTCTAACTC+TGG | - | chr2.1:25124046-25124065 | MS.gene94484:intron | 45.0% |
| !! | TTCTAGGCCGACTTTTACAC+CGG | + | chr2.1:25123846-25123865 | None:intergenic | 45.0% |
| !! | TTGTGAAGGTGCTGAAGCTA+AGG | - | chr2.1:25122460-25122479 | MS.gene94484:CDS | 45.0% |
| !!! | GTATTTTTTTAATATTTATT+TGG | - | chr2.1:25122715-25122734 | MS.gene94484:intron | 5.0% |
| ACCACCACCATAAGACACCT+TGG | + | chr2.1:25124038-25124057 | None:intergenic | 50.0% | |
| ACCGTGTTCCAGATTCGTCT+TGG | - | chr2.1:25124942-25124961 | MS.gene94484:intron | 50.0% | |
| ATCTCCAAATCCTCCGGCTT+CGG | + | chr2.1:25124005-25124024 | None:intergenic | 50.0% | |
| GAAATGTTGCCTACCGAAGC+CGG | - | chr2.1:25123989-25124008 | MS.gene94484:intron | 50.0% | |
| GAGTTTATGCAGGCTGACAG+TGG | - | chr2.1:25124848-25124867 | MS.gene94484:intron | 50.0% | |
| GGAACTGTCCAAGACGAATC+TGG | + | chr2.1:25124953-25124972 | None:intergenic | 50.0% | |
| GGCCTAGAAGCTACTGATCA+TGG | - | chr2.1:25123857-25123876 | MS.gene94484:intron | 50.0% | |
| ! | TGGAGATTTTCCACCAGCCA+AGG | - | chr2.1:25124018-25124037 | MS.gene94484:intron | 50.0% |
| CAGTTTAGCCCCGAAGCTGT+AGG | + | chr2.1:25124992-25125011 | None:intergenic | 55.0% | |
| CATCACCACCTACAGCTTCG+GGG | - | chr2.1:25124981-25125000 | MS.gene94484:CDS | 55.0% | |
| CCACCATAAGACACCTTGGC+TGG | + | chr2.1:25124034-25124053 | None:intergenic | 55.0% | |
| CCATAAGACACCTTGGCTGG+TGG | + | chr2.1:25124031-25124050 | None:intergenic | 55.0% | |
| CCATCACCACCTACAGCTTC+GGG | - | chr2.1:25124980-25124999 | MS.gene94484:CDS | 55.0% | |
| CCCATCACCACCTACAGCTT+CGG | - | chr2.1:25124979-25124998 | MS.gene94484:CDS | 55.0% | |
| CCGAAGCTGTAGGTGGTGAT+GGG | + | chr2.1:25124982-25125001 | None:intergenic | 55.0% | |
| CTACAGCTTCGGGGCTAAAC+TGG | - | chr2.1:25124990-25125009 | MS.gene94484:CDS | 55.0% | |
| TTTAGCCCCGAAGCTGTAGG+TGG | + | chr2.1:25124989-25125008 | None:intergenic | 55.0% | |
| ! | CCACCAGCCAAGGTGTCTTA+TGG | - | chr2.1:25124028-25124047 | MS.gene94484:intron | 55.0% |
| ! | CCAGCCAAGGTGTCTTATGG+TGG | - | chr2.1:25124031-25124050 | MS.gene94484:intron | 55.0% |
| ! | GCCAAGGTGTCTTATGGTGG+TGG | - | chr2.1:25124034-25124053 | MS.gene94484:intron | 55.0% |
| !! | GTAGGTGGTGATGGGATCTG+AGG | + | chr2.1:25124974-25124993 | None:intergenic | 55.0% |
| ATGTTGCCTACCGAAGCCGG+AGG | - | chr2.1:25123992-25124011 | MS.gene94484:intron | 60.0% | |
| CCAAATCCTCCGGCTTCGGT+AGG | + | chr2.1:25124001-25124020 | None:intergenic | 60.0% | |
| CCCGAAGCTGTAGGTGGTGA+TGG | + | chr2.1:25124983-25125002 | None:intergenic | 60.0% | |
| CCTACCGAAGCCGGAGGATT+TGG | - | chr2.1:25123998-25124017 | MS.gene94484:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 25122440 | 25125129 | 25122440 | ID=MS.gene94484 |
| chr2.1 | mRNA | 25122440 | 25125129 | 25122440 | ID=MS.gene94484.t1;Parent=MS.gene94484 |
| chr2.1 | exon | 25124947 | 25125129 | 25124947 | ID=MS.gene94484.t1.exon1;Parent=MS.gene94484.t1 |
| chr2.1 | CDS | 25124947 | 25125129 | 25124947 | ID=cds.MS.gene94484.t1;Parent=MS.gene94484.t1 |
| chr2.1 | exon | 25123410 | 25123841 | 25123410 | ID=MS.gene94484.t1.exon2;Parent=MS.gene94484.t1 |
| chr2.1 | CDS | 25123410 | 25123841 | 25123410 | ID=cds.MS.gene94484.t1;Parent=MS.gene94484.t1 |
| chr2.1 | exon | 25122440 | 25122709 | 25122440 | ID=MS.gene94484.t1.exon3;Parent=MS.gene94484.t1 |
| chr2.1 | CDS | 25122440 | 25122709 | 25122440 | ID=cds.MS.gene94484.t1;Parent=MS.gene94484.t1 |
| Gene Sequence |
| Protein sequence |
