Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94684.t1 | XP_013449172.1 | 86.3 | 329 | 13 | 2 | 1 | 297 | 1 | 329 | 1.40E-131 | 479.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94684.t1 | Q8VYP0 | 56.8 | 310 | 101 | 2 | 21 | 297 | 25 | 334 | 5.2e-74 | 279.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94684.t1 | A0A072U091 | 86.3 | 329 | 13 | 2 | 1 | 297 | 1 | 329 | 1.0e-131 | 479.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050303 | MS.gene94684 | 0.813317 | 2.72E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene94684 | 0.803399 | 3.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94684.t1 | MTR_7g069070 | 83.587 | 329 | 22 | 2 | 1 | 297 | 1 | 329 | 1.14e-179 | 498 |
| MS.gene94684.t1 | MTR_8g090295 | 31.343 | 201 | 100 | 3 | 125 | 292 | 71 | 266 | 2.12e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94684.t1 | AT3G08950 | 51.818 | 330 | 116 | 4 | 11 | 297 | 5 | 334 | 2.03e-100 | 298 |
| MS.gene94684.t1 | AT4G39740 | 33.758 | 157 | 73 | 1 | 167 | 292 | 115 | 271 | 5.04e-24 | 99.0 |
Find 64 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAACAGTGATTCTGATTC+TGG | 0.235500 | 7.3:-36254517 | MS.gene94684:CDS |
| CCAAAGTTGATTGGTTTAAC+TGG | 0.299380 | 7.3:-36252175 | MS.gene94684:CDS |
| CTATCAGATGGTGGTTTATT+CGG | 0.302068 | 7.3:+36254547 | None:intergenic |
| CGAGCATGTTACTTATTATA+CGG | 0.311040 | 7.3:+36251264 | None:intergenic |
| ACTTGCTGATGGAGTAATTA+AGG | 0.318558 | 7.3:-36251295 | MS.gene94684:CDS |
| AATTCTTTCCAGATACTTGA+TGG | 0.323856 | 7.3:-36251370 | MS.gene94684:intron |
| AGAAGAGAGGAAGTGGGTTT+GGG | 0.332337 | 7.3:+36254836 | None:intergenic |
| AAGAAGAGAGGAAGTGGGTT+TGG | 0.336158 | 7.3:+36254835 | None:intergenic |
| TAGGTTGAGAAGCAAGTTTA+TGG | 0.341169 | 7.3:-36254637 | MS.gene94684:CDS |
| TAAAATGACATACATGACTA+TGG | 0.350804 | 7.3:+36252060 | None:intergenic |
| CTGCGGGAAAAGCTGCGATT+GGG | 0.363194 | 7.3:-36253162 | MS.gene94684:CDS |
| AGAAGCAAGTTTATGGTAAT+GGG | 0.369659 | 7.3:-36254630 | MS.gene94684:CDS |
| GTAGCGGAAGAGGTTGGTTT+TGG | 0.370329 | 7.3:+36254895 | None:intergenic |
| TGGGTTTGGGATTGCGAAGA+AGG | 0.378633 | 7.3:+36254849 | None:intergenic |
| GAGAAGCAAGTTTATGGTAA+TGG | 0.410270 | 7.3:-36254631 | MS.gene94684:CDS |
| CTCCTTACAGAGGAGAAATC+TGG | 0.412185 | 7.3:-36252377 | MS.gene94684:intron |
| GAATTTCATCCAAAGTTGAT+TGG | 0.417652 | 7.3:-36252184 | MS.gene94684:CDS |
| TGTAACTGATAAGGACTTCA+TGG | 0.424704 | 7.3:-36253104 | MS.gene94684:CDS |
| CCAGTTAAACCAATCAACTT+TGG | 0.430893 | 7.3:+36252175 | None:intergenic |
| TGATGGTTCGTAAGCTCAAA+TGG | 0.436005 | 7.3:+36253136 | None:intergenic |
| AGCGAGAAGCGTAGCGGAAG+AGG | 0.436565 | 7.3:+36254885 | None:intergenic |
| TGTTTCAGAGGCAGTTAAGC+AGG | 0.440778 | 7.3:-36253191 | MS.gene94684:CDS |
| TGGTGAAAGAAGAGAGGAAG+TGG | 0.447234 | 7.3:+36254829 | None:intergenic |
| ACAAAGCTCAACCATGCAAC+CGG | 0.465237 | 7.3:+36254134 | None:intergenic |
| TCTGCGGGAAAAGCTGCGAT+TGG | 0.466176 | 7.3:-36253163 | MS.gene94684:CDS |
| GAAAAGAAACGACATATAGA+AGG | 0.474838 | 7.3:-36254065 | MS.gene94684:intron |
| CAGTTACACGTTTCCCGTGA+TGG | 0.485750 | 7.3:+36253119 | None:intergenic |
| TCTTTCACACCAACCTCGCC+AGG | 0.487138 | 7.3:-36254792 | MS.gene94684:intron |
| AACTTCACAAATCCCATGTC+AGG | 0.490485 | 7.3:+36251345 | None:intergenic |
| CGGGAAACGTGTAACTGATA+AGG | 0.502114 | 7.3:-36253113 | MS.gene94684:CDS |
| GAGAATGAACCTGGCGAGGT+TGG | 0.505718 | 7.3:+36254783 | None:intergenic |
| TGCGGGAAAAGCTGCGATTG+GGG | 0.507996 | 7.3:-36253161 | MS.gene94684:CDS |
| TCTGGTCAAGGAAAAGAGTC+TGG | 0.509874 | 7.3:-36254499 | MS.gene94684:CDS |
| ATACTTGATGGCACCTGACA+TGG | 0.521774 | 7.3:-36251358 | MS.gene94684:CDS |
| TGTTCAACAGTATCCCTCTC+AGG | 0.533850 | 7.3:+36252320 | None:intergenic |
| GTTAAGCAGGGACCTTCTGC+GGG | 0.534373 | 7.3:-36253178 | MS.gene94684:CDS |
| AGTGATTCTGATTCTGGTCA+AGG | 0.534418 | 7.3:-36254511 | MS.gene94684:CDS |
| TTGAGCTTACGAACCATCAC+GGG | 0.542906 | 7.3:-36253132 | MS.gene94684:CDS |
| TTATCTCTGTTGATCCTGAG+AGG | 0.545683 | 7.3:-36252334 | MS.gene94684:CDS |
| GAGTGATGGTGAAAGAAGAG+AGG | 0.554818 | 7.3:+36254823 | None:intergenic |
| AGAAGCGTAGCGGAAGAGGT+TGG | 0.556250 | 7.3:+36254889 | None:intergenic |
| GTGTGTTGCAGCCGGTTGCA+TGG | 0.557328 | 7.3:-36254145 | MS.gene94684:intron |
| GGTGAAAGAAGAGAGGAAGT+GGG | 0.558612 | 7.3:+36254830 | None:intergenic |
| TATCTCTGTTGATCCTGAGA+GGG | 0.559192 | 7.3:-36252333 | MS.gene94684:CDS |
| GGTCGTTGATGCTGCATCAG+AGG | 0.573749 | 7.3:-36254609 | MS.gene94684:CDS |
| TCAGATGGTGGTTTATTCGG+TGG | 0.574008 | 7.3:+36254550 | None:intergenic |
| AGTTAAGCAGGGACCTTCTG+CGG | 0.574559 | 7.3:-36253179 | MS.gene94684:CDS |
| GATGTTGACTCACTTGCTGA+TGG | 0.579983 | 7.3:-36251306 | MS.gene94684:CDS |
| GAAGACAGCAGAGGAAGACT+CGG | 0.592685 | 7.3:-36252101 | MS.gene94684:CDS |
| GTTTCAGAGGCAGTTAAGCA+GGG | 0.597886 | 7.3:-36253190 | MS.gene94684:CDS |
| TTTGAGCTTACGAACCATCA+CGG | 0.602006 | 7.3:-36253133 | MS.gene94684:CDS |
| GTAACTGATAAGGACTTCAT+GGG | 0.605698 | 7.3:-36253103 | MS.gene94684:intron |
| GATGAATTACTATCAGATGG+TGG | 0.606912 | 7.3:+36254538 | None:intergenic |
| GCGGGAAAAGCTGCGATTGG+GGG | 0.610060 | 7.3:-36253160 | MS.gene94684:CDS |
| TACTTGATGGCACCTGACAT+GGG | 0.617481 | 7.3:-36251357 | MS.gene94684:CDS |
| AGAGAGAGCGAGAAGCGTAG+CGG | 0.620758 | 7.3:+36254879 | None:intergenic |
| AGAAGAGAATGAACCTGGCG+AGG | 0.623470 | 7.3:+36254779 | None:intergenic |
| TTTGATGAATTACTATCAGA+TGG | 0.624080 | 7.3:+36254535 | None:intergenic |
| AGATATACAAAATGTTTCAG+AGG | 0.637141 | 7.3:-36253203 | MS.gene94684:CDS |
| GAAAGATGACGATAGAGTGA+TGG | 0.637253 | 7.3:+36254809 | None:intergenic |
| GAGGGATACTGTTGAACAAG+TGG | 0.649326 | 7.3:-36252315 | MS.gene94684:CDS |
| TTATTATATGAAGACAGCAG+AGG | 0.675812 | 7.3:-36252110 | MS.gene94684:CDS |
| CAAGTGGCTGAATATGTCAA+AGG | 0.681667 | 7.3:-36252299 | MS.gene94684:intron |
| ATTGGTATATTACTATGACA+AGG | 0.715806 | 7.3:-36254087 | MS.gene94684:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACATATATATTATAGTATT+TGG | - | chr7.3:36254156-36254175 | MS.gene94684:intron | 10.0% |
| !! | AAAACAATTTATAGCTAATA+TGG | + | chr7.3:36253567-36253586 | None:intergenic | 15.0% |
| !! | TAATATATAAGTATTCTTGT+AGG | - | chr7.3:36254553-36254572 | MS.gene94684:CDS | 15.0% |
| !! | TACTATAATATATATGTAGT+AGG | + | chr7.3:36254154-36254173 | None:intergenic | 15.0% |
| !! | TTATTTAAAAATACAAGTAG+AGG | + | chr7.3:36252538-36252557 | None:intergenic | 15.0% |
| !!! | AATAAGATGGATATATTTTT+AGG | + | chr7.3:36254650-36254669 | None:intergenic | 15.0% |
| !!! | ATTGTGTTTGTTTTAATTTT+CGG | - | chr7.3:36251501-36251520 | MS.gene94684:intron | 15.0% |
| !!! | TTATGATATCTAATCTTTTT+TGG | - | chr7.3:36252420-36252439 | MS.gene94684:intron | 15.0% |
| !!! | TTGAATTATGTTAATTTTCT+CGG | - | chr7.3:36251851-36251870 | MS.gene94684:intron | 15.0% |
| !! | AAATTATATGTAACTGACAT+AGG | - | chr7.3:36254751-36254770 | MS.gene94684:intron | 20.0% |
| !! | AATTATATGTAACTGACATA+GGG | - | chr7.3:36254752-36254771 | MS.gene94684:intron | 20.0% |
| !! | AGTAATTCGTCAAAAATATA+AGG | - | chr7.3:36252765-36252784 | MS.gene94684:intron | 20.0% |
| !! | TAAAATAAGTAAGTGTTTGT+AGG | - | chr7.3:36253190-36253209 | MS.gene94684:CDS | 20.0% |
| !! | TGACTTATTTAAGCTTATAT+TGG | + | chr7.3:36253671-36253690 | None:intergenic | 20.0% |
| !! | TGATTGAATTTCAAATAGTT+TGG | - | chr7.3:36252387-36252406 | MS.gene94684:intron | 20.0% |
| !! | TTTGCATTTAATTGTTAAAC+TGG | - | chr7.3:36252610-36252629 | MS.gene94684:intron | 20.0% |
| !!! | AAATGAACATTGATGTATTT+TGG | - | chr7.3:36253107-36253126 | MS.gene94684:CDS | 20.0% |
| !!! | ATGGCATTATTTTATTTCAA+CGG | + | chr7.3:36252569-36252588 | None:intergenic | 20.0% |
| !!! | ATGTTAATTGTATGTCTTTT+TGG | - | chr7.3:36252221-36252240 | MS.gene94684:intron | 20.0% |
| !!! | ATTTTTAGGAATAGAAGTTT+AGG | + | chr7.3:36254636-36254655 | None:intergenic | 20.0% |
| !!! | TAACTTTCTGTTGAAATTTT+AGG | - | chr7.3:36251530-36251549 | MS.gene94684:intron | 20.0% |
| !!! | TAATATGAATTTTATGAGAC+CGG | - | chr7.3:36251976-36251995 | MS.gene94684:intron | 20.0% |
| !!! | TAATCTTTGAAATATATCCA+TGG | - | chr7.3:36254466-36254485 | MS.gene94684:CDS | 20.0% |
| !!! | TGTTAATTGTATGTCTTTTT+GGG | - | chr7.3:36252222-36252241 | MS.gene94684:intron | 20.0% |
| !!! | TTTGTTTTTCTGATTTTAAC+TGG | - | chr7.3:36252070-36252089 | MS.gene94684:intron | 20.0% |
| !!! | TTTTTAGGAATAGAAGTTTA+GGG | + | chr7.3:36254635-36254654 | None:intergenic | 20.0% |
| ! | AATTACGATGTGAAAAAAAC+TGG | + | chr7.3:36254370-36254389 | None:intergenic | 25.0% |
| ! | AGATATACAAAATGTTTCAG+AGG | - | chr7.3:36252983-36253002 | MS.gene94684:intron | 25.0% |
| ! | AGGAAAAAATGAGATAGTAT+AGG | - | chr7.3:36254193-36254212 | MS.gene94684:intron | 25.0% |
| ! | ATATAGAAGGTAGATTACTA+TGG | - | chr7.3:36252134-36252153 | MS.gene94684:CDS | 25.0% |
| ! | ATTGGTATATTACTATGACA+AGG | - | chr7.3:36252099-36252118 | MS.gene94684:CDS | 25.0% |
| ! | CTTCAAAGTTATGAATAAGA+TGG | + | chr7.3:36254663-36254682 | None:intergenic | 25.0% |
| ! | GAAATAGTTAAATTCACAAG+AGG | - | chr7.3:36253316-36253335 | MS.gene94684:intron | 25.0% |
| ! | GAACAAAACAATGAAATTAG+AGG | + | chr7.3:36251471-36251490 | None:intergenic | 25.0% |
| ! | GAATACAAAATTACTTGATC+TGG | + | chr7.3:36252666-36252685 | None:intergenic | 25.0% |
| ! | TAAAATGACATACATGACTA+TGG | + | chr7.3:36254129-36254148 | None:intergenic | 25.0% |
| ! | TAAGAAAATAATAAAGGGAC+AGG | + | chr7.3:36252733-36252752 | None:intergenic | 25.0% |
| ! | TATAAACACTGCAAATTCAA+TGG | - | chr7.3:36252640-36252659 | MS.gene94684:intron | 25.0% |
| ! | TCCATTAATTGGAAAATCAA+TGG | + | chr7.3:36254292-36254311 | None:intergenic | 25.0% |
| ! | TGAAATTAGAGGTAAAAAAG+TGG | + | chr7.3:36251460-36251479 | None:intergenic | 25.0% |
| ! | TTAAATAAGTCAATCCAAAC+AGG | - | chr7.3:36253679-36253698 | MS.gene94684:intron | 25.0% |
| ! | TTGAAATATATCCATGGAAA+GGG | - | chr7.3:36254472-36254491 | MS.gene94684:CDS | 25.0% |
| ! | TTGTTCACTGTATTATTGTT+TGG | - | chr7.3:36252251-36252270 | MS.gene94684:intron | 25.0% |
| ! | TTTGATGAATTACTATCAGA+TGG | + | chr7.3:36251654-36251673 | None:intergenic | 25.0% |
| !! | GATTTTATAGAATCTTAGCA+GGG | - | chr7.3:36252802-36252821 | MS.gene94684:intron | 25.0% |
| !! | GGTTTTTATGATCAAATTGA+AGG | + | chr7.3:36251439-36251458 | None:intergenic | 25.0% |
| !! | TAGCTATAAATTGTTTTCAC+AGG | - | chr7.3:36253570-36253589 | MS.gene94684:intron | 25.0% |
| !! | TGATTTTATAGAATCTTAGC+AGG | - | chr7.3:36252801-36252820 | MS.gene94684:intron | 25.0% |
| !! | TTTGAAATATATCCATGGAA+AGG | - | chr7.3:36254471-36254490 | MS.gene94684:CDS | 25.0% |
| !! | TTTGTTTCTTAGTGATATCA+TGG | - | chr7.3:36252922-36252941 | MS.gene94684:intron | 25.0% |
| !!! | AATCTTTTTTGGTGTAAACT+GGG | - | chr7.3:36252431-36252450 | MS.gene94684:intron | 25.0% |
| !!! | ACACTTTTTATATCTCATGT+TGG | - | chr7.3:36253934-36253953 | MS.gene94684:intron | 25.0% |
| !!! | ACTAGTGTTTTAGATCTTAA+TGG | - | chr7.3:36253728-36253747 | MS.gene94684:intron | 25.0% |
| !!! | GTAATGAGGTTATTTGTTTT+TGG | - | chr7.3:36252014-36252033 | MS.gene94684:intron | 25.0% |
| !!! | TAATCTTTTTTGGTGTAAAC+TGG | - | chr7.3:36252430-36252449 | MS.gene94684:intron | 25.0% |
| !!! | TAATTTTCTCGGAGTATTTT+CGG | - | chr7.3:36251862-36251881 | MS.gene94684:intron | 25.0% |
| !!! | TTATTTTAGAGGAAAAGATG+AGG | + | chr7.3:36254322-36254341 | None:intergenic | 25.0% |
| !!! | TTTTAGGAATAGAAGTTTAG+GGG | + | chr7.3:36254634-36254653 | None:intergenic | 25.0% |
| AAAAAAGAAGAGAATGAACC+TGG | + | chr7.3:36251415-36251434 | None:intergenic | 30.0% | |
| AAAAACCAATTGACACATCA+TGG | + | chr7.3:36252588-36252607 | None:intergenic | 30.0% | |
| AATAAGTAAGTGTTTGTAGG+TGG | - | chr7.3:36253193-36253212 | MS.gene94684:CDS | 30.0% | |
| AATTCTTTCCAGATACTTGA+TGG | - | chr7.3:36254816-36254835 | MS.gene94684:CDS | 30.0% | |
| AGAAGCAAGTTTATGGTAAT+GGG | - | chr7.3:36251556-36251575 | MS.gene94684:intron | 30.0% | |
| CGGTGTATGATATCTAATAA+CGG | - | chr7.3:36252511-36252530 | MS.gene94684:intron | 30.0% | |
| GAAAAGAAACGACATATAGA+AGG | - | chr7.3:36252121-36252140 | MS.gene94684:CDS | 30.0% | |
| GAAATTCAATCAGCATTATC+AGG | + | chr7.3:36252379-36252398 | None:intergenic | 30.0% | |
| GAGGAATCATATCCATTAAT+TGG | + | chr7.3:36254303-36254322 | None:intergenic | 30.0% | |
| GAGTTTATAGACATGTCATA+AGG | - | chr7.3:36253603-36253622 | MS.gene94684:intron | 30.0% | |
| TATATGTGTATGTGCTTCAT+AGG | - | chr7.3:36251917-36251936 | MS.gene94684:intron | 30.0% | |
| TTACAAGTACAATGCAAATC+CGG | + | chr7.3:36251998-36252017 | None:intergenic | 30.0% | |
| TTATTATATGAAGACAGCAG+AGG | - | chr7.3:36254076-36254095 | MS.gene94684:CDS | 30.0% | |
| TTCAAATTCATAGACAGAAG+CGG | + | chr7.3:36254411-36254430 | None:intergenic | 30.0% | |
| TTTGCATTGTACTTGTAATG+AGG | - | chr7.3:36252000-36252019 | MS.gene94684:intron | 30.0% | |
| TTTGGACATTCAATGAATCT+AGG | - | chr7.3:36252269-36252288 | MS.gene94684:intron | 30.0% | |
| ! | ATGGGATTTGTGAAGTTTTT+CGG | - | chr7.3:36254847-36254866 | MS.gene94684:CDS | 30.0% |
| ! | GAATTTCATCCAAAGTTGAT+TGG | - | chr7.3:36254002-36254021 | MS.gene94684:intron | 30.0% |
| !! | CAACACTTTTTATCTCATCT+GGG | + | chr7.3:36254040-36254059 | None:intergenic | 30.0% |
| !!! | GATCGAGGAATTTATTTTAG+AGG | + | chr7.3:36254333-36254352 | None:intergenic | 30.0% |
| !!! | GCCATTGATTTTCCAATTAA+TGG | - | chr7.3:36254288-36254307 | MS.gene94684:intron | 30.0% |
| !!! | GTTTTTCTGATTTTAACTGG+AGG | - | chr7.3:36252073-36252092 | MS.gene94684:CDS | 30.0% |
| ACCACCAAGAAACAAAGATT+TGG | + | chr7.3:36252879-36252898 | None:intergenic | 35.0% | |
| CCAGTTAAACCAATCAACTT+TGG | + | chr7.3:36254014-36254033 | None:intergenic | 35.0% | |
| GAGAAGCAAGTTTATGGTAA+TGG | - | chr7.3:36251555-36251574 | MS.gene94684:intron | 35.0% | |
| GATGAATTACTATCAGATGG+TGG | + | chr7.3:36251651-36251670 | None:intergenic | 35.0% | |
| GATTACCAAAAATCTCTTCG+CGG | - | chr7.3:36251732-36251751 | MS.gene94684:intron | 35.0% | |
| GATTTAACTACTCTAGATCG+AGG | + | chr7.3:36254348-36254367 | None:intergenic | 35.0% | |
| GGATCAACAGAGATAAAAAC+TGG | + | chr7.3:36253848-36253867 | None:intergenic | 35.0% | |
| GTAACTGATAAGGACTTCAT+GGG | - | chr7.3:36253083-36253102 | MS.gene94684:intron | 35.0% | |
| GTGGATAAGATATATGCATG+TGG | - | chr7.3:36252176-36252195 | MS.gene94684:CDS | 35.0% | |
| TAATGCCATGATGTGTCAAT+TGG | - | chr7.3:36252580-36252599 | MS.gene94684:intron | 35.0% | |
| TCAAACAGTGATTCTGATTC+TGG | - | chr7.3:36251669-36251688 | MS.gene94684:intron | 35.0% | |
| TCAAATTCATAGACAGAAGC+GGG | + | chr7.3:36254410-36254429 | None:intergenic | 35.0% | |
| TGTAACTGATAAGGACTTCA+TGG | - | chr7.3:36253082-36253101 | MS.gene94684:intron | 35.0% | |
| TTTCACATCGTAATTGCTCT+TGG | - | chr7.3:36254375-36254394 | MS.gene94684:intron | 35.0% | |
| ! | ACTTGCTGATGGAGTAATTA+AGG | - | chr7.3:36254891-36254910 | MS.gene94684:CDS | 35.0% |
| ! | ATTGTTTTCACAGGCTATCA+TGG | - | chr7.3:36253579-36253598 | MS.gene94684:intron | 35.0% |
| ! | CATGCCAAATCTTTGTTTCT+TGG | - | chr7.3:36252872-36252891 | MS.gene94684:intron | 35.0% |
| ! | CTATCAGATGGTGGTTTATT+CGG | + | chr7.3:36251642-36251661 | None:intergenic | 35.0% |
| ! | TAGGTTGAGAAGCAAGTTTA+TGG | - | chr7.3:36251549-36251568 | MS.gene94684:intron | 35.0% |
| ! | TGAGTTAGTTGAGTGTTTTG+TGG | - | chr7.3:36252157-36252176 | MS.gene94684:CDS | 35.0% |
| !! | ATTAGTCTTTGCAGTTGTAG+CGG | + | chr7.3:36252463-36252482 | None:intergenic | 35.0% |
| !! | CCAAAGTTGATTGGTTTAAC+TGG | - | chr7.3:36254011-36254030 | MS.gene94684:intron | 35.0% |
| !! | GAAAGAGAATCAGTTGATAG+AGG | + | chr7.3:36254706-36254725 | None:intergenic | 35.0% |
| !! | GCAACACTTTTTATCTCATC+TGG | + | chr7.3:36254041-36254060 | None:intergenic | 35.0% |
| !!! | ATTTGGCTTTCGCTTTTTAG+AGG | - | chr7.3:36254173-36254192 | MS.gene94684:intron | 35.0% |
| !!! | TTTCTGATTTTAACTGGAGG+TGG | - | chr7.3:36252076-36252095 | MS.gene94684:CDS | 35.0% |
| AAATTGAGTCACAGCTCACA+GGG | + | chr7.3:36254610-36254629 | None:intergenic | 40.0% | |
| AACTTCACAAATCCCATGTC+AGG | + | chr7.3:36254844-36254863 | None:intergenic | 40.0% | |
| AAGACAAGTAACGCTTACAG+TGG | + | chr7.3:36252705-36252724 | None:intergenic | 40.0% | |
| ACTAACTTCTGTAGTTCCTC+AGG | + | chr7.3:36253158-36253177 | None:intergenic | 40.0% | |
| AGACAAGTAACGCTTACAGT+GGG | + | chr7.3:36252704-36252723 | None:intergenic | 40.0% | |
| AGTGATTCTGATTCTGGTCA+AGG | - | chr7.3:36251675-36251694 | MS.gene94684:intron | 40.0% | |
| ATATCATACACCGCCCATTT+GGG | + | chr7.3:36252504-36252523 | None:intergenic | 40.0% | |
| CAAGTGGCTGAATATGTCAA+AGG | - | chr7.3:36253887-36253906 | MS.gene94684:intron | 40.0% | |
| CACTAGTATGCTTTCTCATG+TGG | + | chr7.3:36253715-36253734 | None:intergenic | 40.0% | |
| GAAAGATGACGATAGAGTGA+TGG | + | chr7.3:36251380-36251399 | None:intergenic | 40.0% | |
| GCTTTCTCATGTGGTCTTTA+AGG | + | chr7.3:36253706-36253725 | None:intergenic | 40.0% | |
| TACAAAGCTTACCCTTTCCA+TGG | + | chr7.3:36254486-36254505 | None:intergenic | 40.0% | |
| TATCTCTGTTGATCCTGAGA+GGG | - | chr7.3:36253853-36253872 | MS.gene94684:intron | 40.0% | |
| TGATGGTTCGTAAGCTCAAA+TGG | + | chr7.3:36253053-36253072 | None:intergenic | 40.0% | |
| TGCATGAGTTGTCAGAACTT+AGG | - | chr7.3:36253454-36253473 | MS.gene94684:intron | 40.0% | |
| TTAATCTCCTTGCCAATGTG+AGG | - | chr7.3:36254516-36254535 | MS.gene94684:CDS | 40.0% | |
| TTATCTCTGTTGATCCTGAG+AGG | - | chr7.3:36253852-36253871 | MS.gene94684:intron | 40.0% | |
| TTCCAGATTTCTCCTCTGTA+AGG | + | chr7.3:36253814-36253833 | None:intergenic | 40.0% | |
| TTTGAGCTTACGAACCATCA+CGG | - | chr7.3:36253053-36253072 | MS.gene94684:intron | 40.0% | |
| ! | ACGCCTTCAATCAAAAGTGT+CGG | + | chr7.3:36251800-36251819 | None:intergenic | 40.0% |
| ! | ACTAATCCCTTGAGCTTTGT+GGG | - | chr7.3:36252477-36252496 | MS.gene94684:intron | 40.0% |
| ! | ATTCACAAGAGGTACATGTG+TGG | - | chr7.3:36253327-36253346 | MS.gene94684:intron | 40.0% |
| ! | CAGGGTCAATTCTTGTTTGA+GGG | - | chr7.3:36252820-36252839 | MS.gene94684:intron | 40.0% |
| ! | CGGTGTGTATCTGAAACTAT+TGG | - | chr7.3:36251757-36251776 | MS.gene94684:intron | 40.0% |
| ! | CTCATGTTGGTTATTTGCTG+CGG | - | chr7.3:36253947-36253966 | MS.gene94684:intron | 40.0% |
| ! | GCCAAATCTTTGTTTCTTGG+TGG | - | chr7.3:36252875-36252894 | MS.gene94684:intron | 40.0% |
| ! | TCTCTTTTGTCTCCTTACAG+AGG | - | chr7.3:36253799-36253818 | MS.gene94684:intron | 40.0% |
| ! | TTCACAAGAGGTACATGTGT+GGG | - | chr7.3:36253328-36253347 | MS.gene94684:intron | 40.0% |
| !! | GAGATAGTATAGGTGTTGAC+TGG | - | chr7.3:36254203-36254222 | MS.gene94684:intron | 40.0% |
| !!! | GATTTTAACTGGAGGTGGAT+TGG | - | chr7.3:36252081-36252100 | MS.gene94684:CDS | 40.0% |
| !!! | GTTGGTTTTGGTGGATATCA+TGG | + | chr7.3:36251282-36251301 | None:intergenic | 40.0% |
| ACAAAGCTCAACCATGCAAC+CGG | + | chr7.3:36252055-36252074 | None:intergenic | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr7.3:36253634-36253653 | None:intergenic | 45.0% | |
| AGTTCCTCAGGACAGATATC+TGG | + | chr7.3:36253146-36253165 | None:intergenic | 45.0% | |
| CAAATTGAGTCACAGCTCAC+AGG | + | chr7.3:36254611-36254630 | None:intergenic | 45.0% | |
| CACACGTGTCAGTATCATGT+CGG | + | chr7.3:36251825-36251844 | None:intergenic | 45.0% | |
| CCAAAAATCTCTTCGCGGAT+CGG | - | chr7.3:36251737-36251756 | MS.gene94684:intron | 45.0% | |
| CGGGAAACGTGTAACTGATA+AGG | - | chr7.3:36253073-36253092 | MS.gene94684:intron | 45.0% | |
| CTCCTTACAGAGGAGAAATC+TGG | - | chr7.3:36253809-36253828 | MS.gene94684:intron | 45.0% | |
| GACTAATCCCTTGAGCTTTG+TGG | - | chr7.3:36252476-36252495 | MS.gene94684:intron | 45.0% | |
| GAGGGATACTGTTGAACAAG+TGG | - | chr7.3:36253871-36253890 | MS.gene94684:intron | 45.0% | |
| GATATCATACACCGCCCATT+TGG | + | chr7.3:36252505-36252524 | None:intergenic | 45.0% | |
| GGTGAAAGAAGAGAGGAAGT+GGG | + | chr7.3:36251359-36251378 | None:intergenic | 45.0% | |
| GTCAGAACTTAGGCGCTATT+TGG | - | chr7.3:36253464-36253483 | MS.gene94684:intron | 45.0% | |
| GTTCCTCAGGACAGATATCT+GGG | + | chr7.3:36253145-36253164 | None:intergenic | 45.0% | |
| GTTTCAGAGGCAGTTAAGCA+GGG | - | chr7.3:36252996-36253015 | MS.gene94684:intron | 45.0% | |
| TAACACCACCGAGACTGTTT+GGG | + | chr7.3:36253645-36253664 | None:intergenic | 45.0% | |
| TAAGCTCTCCCAAACAGTCT+CGG | - | chr7.3:36253634-36253653 | MS.gene94684:intron | 45.0% | |
| TCTGGTCAAGGAAAAGAGTC+TGG | - | chr7.3:36251687-36251706 | MS.gene94684:intron | 45.0% | |
| TGGTGAAAGAAGAGAGGAAG+TGG | + | chr7.3:36251360-36251379 | None:intergenic | 45.0% | |
| TGTTCAACAGTATCCCTCTC+AGG | + | chr7.3:36253869-36253888 | None:intergenic | 45.0% | |
| TGTTTCAGAGGCAGTTAAGC+AGG | - | chr7.3:36252995-36253014 | MS.gene94684:intron | 45.0% | |
| TTAACACCACCGAGACTGTT+TGG | + | chr7.3:36253646-36253665 | None:intergenic | 45.0% | |
| TTGAGCTTACGAACCATCAC+GGG | - | chr7.3:36253054-36253073 | MS.gene94684:intron | 45.0% | |
| TTGGTATTGTGTGTTGCAGC+CGG | - | chr7.3:36252033-36252052 | MS.gene94684:intron | 45.0% | |
| ! | AAGAAGAGAGGAAGTGGGTT+TGG | + | chr7.3:36251354-36251373 | None:intergenic | 45.0% |
| ! | AGAAGAGAGGAAGTGGGTTT+GGG | + | chr7.3:36251353-36251372 | None:intergenic | 45.0% |
| ! | ATACTTGATGGCACCTGACA+TGG | - | chr7.3:36254828-36254847 | MS.gene94684:CDS | 45.0% |
| ! | GAGTGATGGTGAAAGAAGAG+AGG | + | chr7.3:36251366-36251385 | None:intergenic | 45.0% |
| ! | GCAGGGTCAATTCTTGTTTG+AGG | - | chr7.3:36252819-36252838 | MS.gene94684:intron | 45.0% |
| ! | GTGGTCTTTAAGGACCTGTT+TGG | + | chr7.3:36253696-36253715 | None:intergenic | 45.0% |
| ! | TACTTGATGGCACCTGACAT+GGG | - | chr7.3:36254829-36254848 | MS.gene94684:CDS | 45.0% |
| ! | TAGGTGTTTTCTGAGCCTTG+AGG | - | chr7.3:36254572-36254591 | MS.gene94684:CDS | 45.0% |
| ! | TCAGATGGTGGTTTATTCGG+TGG | + | chr7.3:36251639-36251658 | None:intergenic | 45.0% |
| !! | GATGTTGACTCACTTGCTGA+TGG | - | chr7.3:36254880-36254899 | MS.gene94684:CDS | 45.0% |
| !! | GCACCGACACTTTTGATTGA+AGG | - | chr7.3:36251794-36251813 | MS.gene94684:intron | 45.0% |
| !! | ATAATATAAGAAAATAATAA+AGG | + | chr7.3:36252739-36252758 | None:intergenic | 5.0% |
| !! | TAATATAAGAAAATAATAAA+GGG | + | chr7.3:36252738-36252757 | None:intergenic | 5.0% |
| ACGAGTTCCTCACATTGGCA+AGG | + | chr7.3:36254526-36254545 | None:intergenic | 50.0% | |
| AGAAGAGAATGAACCTGGCG+AGG | + | chr7.3:36251410-36251429 | None:intergenic | 50.0% | |
| AGTCTTTGCAGTTGTAGCGG+AGG | + | chr7.3:36252460-36252479 | None:intergenic | 50.0% | |
| AGTTAAGCAGGGACCTTCTG+CGG | - | chr7.3:36253007-36253026 | MS.gene94684:intron | 50.0% | |
| CAGTTACACGTTTCCCGTGA+TGG | + | chr7.3:36253070-36253089 | None:intergenic | 50.0% | |
| GAAGACAGCAGAGGAAGACT+CGG | - | chr7.3:36254085-36254104 | MS.gene94684:CDS | 50.0% | |
| TCACAGCTCACAGGGCTATA+GGG | + | chr7.3:36254602-36254621 | None:intergenic | 50.0% | |
| TGCCAACGAGTTCCTCACAT+TGG | + | chr7.3:36254531-36254550 | None:intergenic | 50.0% | |
| TGCCAATGTGAGGAACTCGT+TGG | - | chr7.3:36254526-36254545 | MS.gene94684:CDS | 50.0% | |
| TTGGGTCCCACAAAGCTCAA+GGG | + | chr7.3:36252486-36252505 | None:intergenic | 50.0% | |
| TTTGGGTCCCACAAAGCTCA+AGG | + | chr7.3:36252487-36252506 | None:intergenic | 50.0% | |
| ! | AAGAGGTACATGTGTGGGCT+TGG | - | chr7.3:36253333-36253352 | MS.gene94684:intron | 50.0% |
| ! | AGAGGTACATGTGTGGGCTT+GGG | - | chr7.3:36253334-36253353 | MS.gene94684:intron | 50.0% |
| ! | CCGATCCGCGAAGAGATTTT+TGG | + | chr7.3:36251740-36251759 | None:intergenic | 50.0% |
| ! | GAGCTTTGTGGGACCCAAAT+GGG | - | chr7.3:36252488-36252507 | MS.gene94684:intron | 50.0% |
| ! | GTCAGGTGCCATCAAGTATC+TGG | + | chr7.3:36254827-36254846 | None:intergenic | 50.0% |
| ! | TGAGCTTTGTGGGACCCAAA+TGG | - | chr7.3:36252487-36252506 | MS.gene94684:intron | 50.0% |
| ! | TGGGTTTGGGATTGCGAAGA+AGG | + | chr7.3:36251340-36251359 | None:intergenic | 50.0% |
| !!! | GTAGCGGAAGAGGTTGGTTT+TGG | + | chr7.3:36251294-36251313 | None:intergenic | 50.0% |
| ACATGTGTGGGCTTGGGGTT+AGG | - | chr7.3:36253340-36253359 | MS.gene94684:intron | 55.0% | |
| CACAGCTCACAGGGCTATAG+GGG | + | chr7.3:36254601-36254620 | None:intergenic | 55.0% | |
| CTGCCCAGATATCTGTCCTG+AGG | - | chr7.3:36253139-36253158 | MS.gene94684:CDS | 55.0% | |
| CTGCGGGAAAAGCTGCGATT+GGG | - | chr7.3:36253024-36253043 | MS.gene94684:intron | 55.0% | |
| CTTTGTGGGACCCAAATGGG+CGG | - | chr7.3:36252491-36252510 | MS.gene94684:intron | 55.0% | |
| GAGAATGAACCTGGCGAGGT+TGG | + | chr7.3:36251406-36251425 | None:intergenic | 55.0% | |
| GAGGTACATGTGTGGGCTTG+GGG | - | chr7.3:36253335-36253354 | MS.gene94684:intron | 55.0% | |
| GGTCGTTGATGCTGCATCAG+AGG | - | chr7.3:36251577-36251596 | MS.gene94684:intron | 55.0% | |
| GTCACAGCTCACAGGGCTAT+AGG | + | chr7.3:36254603-36254622 | None:intergenic | 55.0% | |
| GTTAAGCAGGGACCTTCTGC+GGG | - | chr7.3:36253008-36253027 | MS.gene94684:intron | 55.0% | |
| TCTGCGGGAAAAGCTGCGAT+TGG | - | chr7.3:36253023-36253042 | MS.gene94684:intron | 55.0% | |
| TCTTTCACACCAACCTCGCC+AGG | - | chr7.3:36251394-36251413 | MS.gene94684:intron | 55.0% | |
| TGCGGGAAAAGCTGCGATTG+GGG | - | chr7.3:36253025-36253044 | MS.gene94684:intron | 55.0% | |
| ! | AGAAGCGTAGCGGAAGAGGT+TGG | + | chr7.3:36251300-36251319 | None:intergenic | 55.0% |
| ! | AGAGAGAGCGAGAAGCGTAG+CGG | + | chr7.3:36251310-36251329 | None:intergenic | 55.0% |
| ! | ATCGCAGCTTTTCCCGCAGA+AGG | + | chr7.3:36253023-36253042 | None:intergenic | 55.0% |
| !!! | GCGGAAGAGGTTGGTTTTGG+TGG | + | chr7.3:36251291-36251310 | None:intergenic | 55.0% |
| GCGGGAAAAGCTGCGATTGG+GGG | - | chr7.3:36253026-36253045 | MS.gene94684:intron | 60.0% | |
| GCTCTCCCAAACAGTCTCGG+TGG | - | chr7.3:36253637-36253656 | MS.gene94684:intron | 60.0% | |
| GGGCTATAGGGGAAGCCTCA+AGG | + | chr7.3:36254590-36254609 | None:intergenic | 60.0% | |
| GTGTGTTGCAGCCGGTTGCA+TGG | - | chr7.3:36252041-36252060 | MS.gene94684:intron | 60.0% | |
| TGTGTGGGCTTGGGGTTAGG+TGG | - | chr7.3:36253343-36253362 | MS.gene94684:intron | 60.0% | |
| ! | AGCGAGAAGCGTAGCGGAAG+AGG | + | chr7.3:36251304-36251323 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 36251272 | 36254936 | 36251272 | ID=MS.gene94684 |
| chr7.3 | mRNA | 36251272 | 36254936 | 36251272 | ID=MS.gene94684.t1;Parent=MS.gene94684 |
| chr7.3 | exon | 36254793 | 36254936 | 36254793 | ID=MS.gene94684.t1.exon1;Parent=MS.gene94684.t1 |
| chr7.3 | CDS | 36254793 | 36254936 | 36254793 | ID=cds.MS.gene94684.t1;Parent=MS.gene94684.t1 |
| chr7.3 | exon | 36254450 | 36254656 | 36254450 | ID=MS.gene94684.t1.exon2;Parent=MS.gene94684.t1 |
| chr7.3 | CDS | 36254450 | 36254656 | 36254450 | ID=cds.MS.gene94684.t1;Parent=MS.gene94684.t1 |
| chr7.3 | exon | 36254066 | 36254156 | 36254066 | ID=MS.gene94684.t1.exon3;Parent=MS.gene94684.t1 |
| chr7.3 | CDS | 36254066 | 36254156 | 36254066 | ID=cds.MS.gene94684.t1;Parent=MS.gene94684.t1 |
| chr7.3 | exon | 36253104 | 36253223 | 36253104 | ID=MS.gene94684.t1.exon4;Parent=MS.gene94684.t1 |
| chr7.3 | CDS | 36253104 | 36253223 | 36253104 | ID=cds.MS.gene94684.t1;Parent=MS.gene94684.t1 |
| chr7.3 | exon | 36252300 | 36252389 | 36252300 | ID=MS.gene94684.t1.exon5;Parent=MS.gene94684.t1 |
| chr7.3 | CDS | 36252300 | 36252389 | 36252300 | ID=cds.MS.gene94684.t1;Parent=MS.gene94684.t1 |
| chr7.3 | exon | 36252073 | 36252205 | 36252073 | ID=MS.gene94684.t1.exon6;Parent=MS.gene94684.t1 |
| chr7.3 | CDS | 36252073 | 36252205 | 36252073 | ID=cds.MS.gene94684.t1;Parent=MS.gene94684.t1 |
| chr7.3 | exon | 36251272 | 36251380 | 36251272 | ID=MS.gene94684.t1.exon7;Parent=MS.gene94684.t1 |
| chr7.3 | CDS | 36251272 | 36251380 | 36251272 | ID=cds.MS.gene94684.t1;Parent=MS.gene94684.t1 |
| Gene Sequence |
| Protein sequence |
