Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94815.t1 | XP_013468403.1 | 96.2 | 368 | 13 | 1 | 1 | 367 | 1 | 368 | 1.80E-197 | 698.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94815.t1 | Q8R1Q9 | 25.8 | 365 | 205 | 9 | 11 | 365 | 15 | 323 | 8.5e-18 | 92.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94815.t1 | A0A072VWJ0 | 96.2 | 368 | 13 | 1 | 1 | 367 | 1 | 368 | 1.3e-197 | 698.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051568 | MS.gene94815 | 0.810248 | 1.27E-50 | -1.69E-46 |
| MS.gene052637 | MS.gene94815 | 0.826885 | 2.12E-54 | -1.69E-46 |
| MS.gene058650 | MS.gene94815 | 0.816435 | 5.54E-52 | -1.69E-46 |
| MS.gene059030 | MS.gene94815 | 0.990492 | 6.81E-183 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94815.t1 | MTR_1g069325 | 96.196 | 368 | 13 | 1 | 1 | 367 | 1 | 368 | 0.0 | 722 |
| MS.gene94815.t1 | MTR_1g069325 | 81.522 | 368 | 16 | 2 | 1 | 367 | 1 | 317 | 0.0 | 568 |
| MS.gene94815.t1 | MTR_7g099270 | 67.131 | 359 | 118 | 0 | 9 | 367 | 6 | 364 | 0.0 | 514 |
| MS.gene94815.t1 | MTR_7g099280 | 61.853 | 367 | 140 | 0 | 1 | 367 | 45 | 411 | 7.29e-171 | 482 |
| MS.gene94815.t1 | MTR_7g099280 | 61.853 | 367 | 140 | 0 | 1 | 367 | 43 | 409 | 7.34e-171 | 482 |
| MS.gene94815.t1 | MTR_1g069320 | 65.363 | 358 | 124 | 0 | 9 | 366 | 134 | 491 | 1.14e-170 | 485 |
| MS.gene94815.t1 | MTR_7g099280 | 59.939 | 327 | 131 | 0 | 1 | 327 | 43 | 369 | 4.09e-145 | 416 |
| MS.gene94815.t1 | MTR_7g099280 | 55.586 | 367 | 126 | 1 | 1 | 367 | 53 | 382 | 6.97e-145 | 415 |
| MS.gene94815.t1 | MTR_7g099280 | 58.696 | 276 | 114 | 0 | 1 | 276 | 43 | 318 | 3.71e-115 | 339 |
| MS.gene94815.t1 | MTR_7g099280 | 59.398 | 266 | 108 | 0 | 1 | 266 | 43 | 308 | 9.87e-112 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94815.t1 | AT4G28706 | 62.921 | 356 | 132 | 0 | 11 | 366 | 45 | 400 | 9.33e-170 | 479 |
| MS.gene94815.t1 | AT4G28706 | 62.921 | 356 | 132 | 0 | 11 | 366 | 47 | 402 | 1.40e-169 | 479 |
| MS.gene94815.t1 | AT4G28706 | 62.745 | 357 | 132 | 1 | 11 | 366 | 47 | 403 | 1.15e-167 | 474 |
| MS.gene94815.t1 | AT4G28706 | 62.570 | 358 | 133 | 1 | 11 | 367 | 47 | 404 | 2.46e-167 | 474 |
| MS.gene94815.t1 | AT5G43910 | 53.678 | 367 | 165 | 2 | 1 | 366 | 1 | 363 | 2.95e-137 | 395 |
| MS.gene94815.t1 | AT5G43910 | 52.615 | 325 | 149 | 2 | 1 | 324 | 1 | 321 | 2.26e-116 | 341 |
| MS.gene94815.t1 | AT5G43910 | 50.530 | 283 | 139 | 1 | 1 | 282 | 1 | 283 | 1.80e-97 | 292 |
| MS.gene94815.t1 | AT5G43910 | 50.178 | 281 | 139 | 1 | 1 | 280 | 1 | 281 | 4.26e-97 | 290 |
| MS.gene94815.t1 | AT5G43910 | 50.903 | 277 | 135 | 1 | 1 | 276 | 1 | 277 | 6.15e-97 | 290 |
Find 91 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTAAGATGGATATATTT+TGG | 0.178686 | 1.4:+55846119 | None:intergenic |
| CTATTCTTGGTGTCTGGTTT+TGG | 0.209515 | 1.4:+55849420 | None:intergenic |
| GAATTGAGTGGTTCTATTCT+TGG | 0.228607 | 1.4:+55849407 | None:intergenic |
| GTATGTGGGAGGTTATATTT+TGG | 0.242581 | 1.4:-55845000 | MS.gene94815:CDS |
| AAAACCTTAGAAATTATTCT+TGG | 0.273984 | 1.4:+55847346 | None:intergenic |
| TAAATTTGTGATTGCAACTT+TGG | 0.288479 | 1.4:-55845835 | MS.gene94815:CDS |
| AAAGCCAAGAATAATTTCTA+AGG | 0.303177 | 1.4:-55847350 | MS.gene94815:intron |
| GTTGACTTGTGCTGCTCGTT+TGG | 0.315907 | 1.4:-55847377 | MS.gene94815:CDS |
| CAGGTTGGGTTTGGTGGCGT+TGG | 0.319074 | 1.4:-55849474 | MS.gene94815:CDS |
| GGAAGGATTGAATGACCTTC+TGG | 0.319125 | 1.4:-55846080 | MS.gene94815:CDS |
| TTTGTGTGGCAGGTTGGGTT+TGG | 0.343196 | 1.4:-55849483 | MS.gene94815:intron |
| TTGACTTGTGCTGCTCGTTT+GGG | 0.347544 | 1.4:-55847376 | MS.gene94815:CDS |
| TTAATAAAGTATGCCAGGTT+TGG | 0.355803 | 1.4:+55844216 | None:intergenic |
| AGGCATCCTAACATCAAAAT+AGG | 0.360561 | 1.4:+55846433 | None:intergenic |
| TCAATAATAATGTAGCTAAA+TGG | 0.361983 | 1.4:+55846903 | None:intergenic |
| AGCACAAGTCAACGCATTTC+CGG | 0.383878 | 1.4:+55847387 | None:intergenic |
| GTGGTTCTATTCTTGGTGTC+TGG | 0.388614 | 1.4:+55849414 | None:intergenic |
| AAATTTGTGATTGCAACTTT+GGG | 0.399648 | 1.4:-55845834 | MS.gene94815:CDS |
| AGGTTTGGATCAGTGCGATA+TGG | 0.407682 | 1.4:+55844231 | None:intergenic |
| GCAATCACAAATTTAAGTCT+TGG | 0.419317 | 1.4:+55845843 | None:intergenic |
| GTGTGGCAGGTTGGGTTTGG+TGG | 0.423838 | 1.4:-55849480 | MS.gene94815:intron |
| TGTGGATACTTCTTCATTTG+TGG | 0.428757 | 1.4:-55847192 | MS.gene94815:intron |
| ATTGAATGACCTTCTGGACT+TGG | 0.430538 | 1.4:-55846074 | MS.gene94815:CDS |
| CCTTTCAGCATCAACTAAGA+TGG | 0.434238 | 1.4:+55846108 | None:intergenic |
| TTTGCACGCGAAAGATCTTC+CGG | 0.437545 | 1.4:+55846488 | None:intergenic |
| GGTGCTGGGGATGCATTTGT+TGG | 0.438231 | 1.4:-55844934 | MS.gene94815:CDS |
| GCAATGACAAGAGCAGTTGC+AGG | 0.440063 | 1.4:+55846413 | None:intergenic |
| AGAATTGAAACTAGTGCTCT+TGG | 0.449446 | 1.4:+55845876 | None:intergenic |
| GAATAGAACCACTCAATTCA+AGG | 0.452926 | 1.4:-55849403 | MS.gene94815:intron |
| GCTGCTCAATGTAGAGCTCT+TGG | 0.454335 | 1.4:-55844270 | MS.gene94815:CDS |
| CTTATTGATACAACTGGTGC+TGG | 0.460294 | 1.4:-55844949 | MS.gene94815:CDS |
| AGATCTTCCGGTACCATTGT+AGG | 0.463214 | 1.4:+55846500 | None:intergenic |
| TGCTCTTGTCATTGCTAAAG+AGG | 0.464049 | 1.4:-55846405 | MS.gene94815:intron |
| TCTAATTAATAAAGTATGCC+AGG | 0.474893 | 1.4:+55844211 | None:intergenic |
| TCGGAGCTTATTGATACAAC+TGG | 0.481009 | 1.4:-55844955 | MS.gene94815:CDS |
| CTAGGTTGCAAATGACGCTC+AGG | 0.489161 | 1.4:-55847249 | MS.gene94815:intron |
| AGGGAGAGGAAAAGCAGTGT+TGG | 0.491482 | 1.4:+55849600 | None:intergenic |
| AAATTGTTATCTGCATTGAA+TGG | 0.495412 | 1.4:-55846467 | MS.gene94815:CDS |
| GGAGCTAGAAGCTGAGGGTG+TGG | 0.495904 | 1.4:-55847210 | MS.gene94815:CDS |
| GAAATCTTTAACAATGAGAA+AGG | 0.497680 | 1.4:-55845624 | MS.gene94815:CDS |
| TGCAAATGACGCTCAGGGTA+GGG | 0.500517 | 1.4:-55847243 | MS.gene94815:CDS |
| GCAATATAGGTGCAAGGTGG+GGG | 0.509074 | 1.4:-55847415 | MS.gene94815:intron |
| GTTACAAAATTTAGAGCAGA+CGG | 0.513539 | 1.4:-55845033 | MS.gene94815:CDS |
| TGTTTCCAGGTCTCAAAGGA+AGG | 0.519022 | 1.4:-55846933 | MS.gene94815:intron |
| TGCAATATAGGTGCAAGGTG+GGG | 0.519555 | 1.4:-55847416 | MS.gene94815:intron |
| TTATTGATACAACTGGTGCT+GGG | 0.519824 | 1.4:-55844948 | MS.gene94815:CDS |
| CATGCCAACCTGCGTTGCCT+CGG | 0.527612 | 1.4:-55845588 | MS.gene94815:intron |
| GACGGGATAGGATCAGTATG+TGG | 0.528060 | 1.4:-55845015 | MS.gene94815:CDS |
| AAATTTAGAGCAGACGGGAT+AGG | 0.530754 | 1.4:-55845027 | MS.gene94815:CDS |
| CGAGGCAACGCAGGTTGGCA+TGG | 0.530850 | 1.4:+55845589 | None:intergenic |
| AGGTCATTCAATCCTTCCCT+TGG | 0.534609 | 1.4:+55846085 | None:intergenic |
| AAGAAGACACTCACAATGAC+AGG | 0.535206 | 1.4:+55849571 | None:intergenic |
| TAGTTGATGCTGAAAGGCCA+AGG | 0.535644 | 1.4:-55846102 | MS.gene94815:CDS |
| AATGTAGAGCTCTTGGAGCT+AGG | 0.538329 | 1.4:-55844263 | MS.gene94815:CDS |
| GGGTTCACACTTAGAAGAAG+TGG | 0.542271 | 1.4:-55845663 | MS.gene94815:CDS |
| GATAGAGGAGCTAGAAGCTG+AGG | 0.543786 | 1.4:-55847216 | MS.gene94815:CDS |
| TTGCAAATGACGCTCAGGGT+AGG | 0.550449 | 1.4:-55847244 | MS.gene94815:CDS |
| TTGCAATATAGGTGCAAGGT+GGG | 0.552594 | 1.4:-55847417 | MS.gene94815:intron |
| ATGCTCAGAAAAGTTTCCTA+AGG | 0.555246 | 1.4:-55846038 | MS.gene94815:intron |
| CCATCTTAGTTGATGCTGAA+AGG | 0.556239 | 1.4:-55846108 | MS.gene94815:CDS |
| AGGATCTCCTACAATGGTAC+CGG | 0.559044 | 1.4:-55846507 | MS.gene94815:CDS |
| CATTTGTTTCCAGGTCTCAA+AGG | 0.562119 | 1.4:-55846937 | MS.gene94815:intron |
| AGCTATTACCGAGGCAACGC+AGG | 0.562817 | 1.4:+55845580 | None:intergenic |
| TGCATTGAATGGAGCTAGAG+TGG | 0.563511 | 1.4:-55846456 | MS.gene94815:CDS |
| GCTTACCACATGAGAAGCAA+AGG | 0.564484 | 1.4:+55844586 | None:intergenic |
| GTTTCCAGGTCTCAAAGGAA+GGG | 0.571955 | 1.4:-55846932 | MS.gene94815:intron |
| ATATCGCACTGATCCAAACC+TGG | 0.578250 | 1.4:-55844229 | MS.gene94815:CDS |
| CACAGAAGGATCTCCTACAA+TGG | 0.585278 | 1.4:-55846513 | MS.gene94815:CDS |
| ACACTTAGAAGAAGTGGATG+TGG | 0.593132 | 1.4:-55845657 | MS.gene94815:CDS |
| CATAATCAGCCAAGTCCAGA+AGG | 0.594681 | 1.4:+55846065 | None:intergenic |
| ATGCTTCAGAAATGTGCAGA+TGG | 0.596169 | 1.4:-55845795 | MS.gene94815:intron |
| TTACAAAATTTAGAGCAGAC+GGG | 0.602375 | 1.4:-55845032 | MS.gene94815:CDS |
| GTTGTATCAATAAGCTCCGA+TGG | 0.602597 | 1.4:+55844958 | None:intergenic |
| ATTACCGAGGCAACGCAGGT+TGG | 0.609993 | 1.4:+55845584 | None:intergenic |
| GTTGCCCTTTGCTTCTCATG+TGG | 0.613678 | 1.4:-55844591 | MS.gene94815:intron |
| CTTACCACATGAGAAGCAAA+GGG | 0.616843 | 1.4:+55844587 | None:intergenic |
| CGAACATGTATATTCACAGA+AGG | 0.631793 | 1.4:-55846527 | MS.gene94815:CDS |
| ACGGGATAGGATCAGTATGT+GGG | 0.632094 | 1.4:-55845014 | MS.gene94815:CDS |
| TATTGATACAACTGGTGCTG+GGG | 0.632340 | 1.4:-55844947 | MS.gene94815:CDS |
| GATGCTGAAAGGCCAAGGGA+AGG | 0.639502 | 1.4:-55846097 | MS.gene94815:CDS |
| ATAGAGGAGCTAGAAGCTGA+GGG | 0.648546 | 1.4:-55847215 | MS.gene94815:CDS |
| ATTGCAACTTTGGGAAAAGA+CGG | 0.651143 | 1.4:-55845825 | MS.gene94815:CDS |
| AGGATGAACCTTGAATTGAG+TGG | 0.655549 | 1.4:+55849395 | None:intergenic |
| AGAGCTCTTGGAGCTAGGAG+TGG | 0.656252 | 1.4:-55844258 | MS.gene94815:CDS |
| TAGGTTGCAAATGACGCTCA+GGG | 0.659046 | 1.4:-55847248 | MS.gene94815:CDS |
| AGTTGATGCTGAAAGGCCAA+GGG | 0.668854 | 1.4:-55846101 | MS.gene94815:CDS |
| GTATCAATAAGCTCCGATGG+TGG | 0.679992 | 1.4:+55844961 | None:intergenic |
| GGATAGGATCAGTATGTGGG+AGG | 0.683588 | 1.4:-55845011 | MS.gene94815:CDS |
| TTTGCAATATAGGTGCAAGG+TGG | 0.684597 | 1.4:-55847418 | MS.gene94815:intron |
| CATTTCACAGACATGGACAG+AGG | 0.705633 | 1.4:-55845910 | MS.gene94815:intron |
| GTGTTTGCAATATAGGTGCA+AGG | 0.708600 | 1.4:-55847421 | MS.gene94815:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTCAAAAAAATATAATTA+CGG | - | chr1.4:55844539-55844558 | MS.gene94815:intron | 10.0% |
| !!! | GATATATTTTATTTTAGATA+TGG | + | chr1.4:55846759-55846778 | None:intergenic | 10.0% |
| !!! | GCTAATTATATTTTAAATAT+TGG | - | chr1.4:55845493-55845512 | MS.gene94815:intron | 10.0% |
| !! | AAAAACAAATCTTATGTATA+AGG | - | chr1.4:55844644-55844663 | MS.gene94815:intron | 15.0% |
| !! | AAATTAGTAGTATTAATTAG+GGG | - | chr1.4:55845819-55845838 | MS.gene94815:CDS | 15.0% |
| !! | ACAAATTAGTAGTATTAATT+AGG | - | chr1.4:55845817-55845836 | MS.gene94815:CDS | 15.0% |
| !! | ATCATAATTCTAAATAGATT+CGG | - | chr1.4:55847476-55847495 | MS.gene94815:intron | 15.0% |
| !! | ATGTAAAATCATTTAAGTAA+TGG | + | chr1.4:55846960-55846979 | None:intergenic | 15.0% |
| !! | ATTGTAATAATAAAAACACA+AGG | + | chr1.4:55844461-55844480 | None:intergenic | 15.0% |
| !! | CAAATTAGTAGTATTAATTA+GGG | - | chr1.4:55845818-55845837 | MS.gene94815:CDS | 15.0% |
| !! | TAATAAAAACTGAGAATATA+GGG | - | chr1.4:55848402-55848421 | MS.gene94815:intron | 15.0% |
| !! | TATAAGTATATGAAAGTTAT+TGG | - | chr1.4:55847043-55847062 | MS.gene94815:intron | 15.0% |
| !! | TTAATAAAAACTGAGAATAT+AGG | - | chr1.4:55848401-55848420 | MS.gene94815:intron | 15.0% |
| !!! | TTGAAAATTGAAGTAAATTT+TGG | + | chr1.4:55846688-55846707 | None:intergenic | 15.0% |
| !! | AAAACCTTAGAAATTATTCT+TGG | + | chr1.4:55846476-55846495 | None:intergenic | 20.0% |
| !! | AAAATATTACCCTATCTTAA+TGG | + | chr1.4:55845353-55845372 | None:intergenic | 20.0% |
| !! | AAAGTAATTGTAAGCATATA+TGG | - | chr1.4:55848374-55848393 | MS.gene94815:intron | 20.0% |
| !! | AAATGTGAAAAAAGTAAAGA+GGG | + | chr1.4:55845691-55845710 | None:intergenic | 20.0% |
| !! | AATAATGAATACTATAGACA+AGG | - | chr1.4:55844612-55844631 | MS.gene94815:CDS | 20.0% |
| !! | ACATACTTTACATTGAAAAT+CGG | - | chr1.4:55848440-55848459 | MS.gene94815:intron | 20.0% |
| !! | ATATAAACAAAACAGTTGTT+TGG | + | chr1.4:55849124-55849143 | None:intergenic | 20.0% |
| !! | CAAAAATAAAATCAAATGGA+TGG | - | chr1.4:55845904-55845923 | MS.gene94815:intron | 20.0% |
| !! | CTAATTAATTTCTAATGACT+AGG | - | chr1.4:55846552-55846571 | MS.gene94815:intron | 20.0% |
| !! | TATATCATCTTATCACTATT+TGG | + | chr1.4:55849281-55849300 | None:intergenic | 20.0% |
| !! | TCAATAATAATGTAGCTAAA+TGG | + | chr1.4:55846919-55846938 | None:intergenic | 20.0% |
| !! | TCAATATTTCTTAATGATGT+TGG | - | chr1.4:55846037-55846056 | MS.gene94815:intron | 20.0% |
| !! | TGATTAGAAAGGAAAAAAAA+AGG | + | chr1.4:55848631-55848650 | None:intergenic | 20.0% |
| !! | TTAAGTTAAATTTAAGCACT+AGG | - | chr1.4:55847090-55847109 | MS.gene94815:intron | 20.0% |
| !!! | AAAGTCTTTTAAGATCTATT+GGG | - | chr1.4:55846120-55846139 | MS.gene94815:CDS | 20.0% |
| !!! | ACAAGAACATTAGTTAATTT+TGG | - | chr1.4:55847857-55847876 | MS.gene94815:intron | 20.0% |
| !!! | ACTTGATAATTATATGAGAA+GGG | + | chr1.4:55848282-55848301 | None:intergenic | 20.0% |
| !!! | CAAGAACATTAGTTAATTTT+GGG | - | chr1.4:55847858-55847877 | MS.gene94815:intron | 20.0% |
| !!! | CTTATATTAAACACATGTTT+TGG | + | chr1.4:55846263-55846282 | None:intergenic | 20.0% |
| !!! | TATATTAATGTGTTTGTTGT+TGG | - | chr1.4:55849505-55849524 | MS.gene94815:intron | 20.0% |
| !!! | TATGATAATGCACAATTATT+AGG | + | chr1.4:55848489-55848508 | None:intergenic | 20.0% |
| !!! | TCTAAATTTTGTAACATTCT+AGG | + | chr1.4:55848781-55848800 | None:intergenic | 20.0% |
| !!! | TGTATAATTTTAGTCAAAGT+GGG | - | chr1.4:55845436-55845455 | MS.gene94815:intron | 20.0% |
| !!! | TTATATTTTAAATATTGGCG+TGG | - | chr1.4:55845498-55845517 | MS.gene94815:intron | 20.0% |
| !!! | TTTTTTTCCTTTCTAATCAA+TGG | - | chr1.4:55848632-55848651 | MS.gene94815:intron | 20.0% |
| ! | AAAGCCAAGAATAATTTCTA+AGG | - | chr1.4:55846469-55846488 | MS.gene94815:CDS | 25.0% |
| ! | AAATAGCAAGTTTATGATGT+TGG | + | chr1.4:55846804-55846823 | None:intergenic | 25.0% |
| ! | AAATTGTTATCTGCATTGAA+TGG | - | chr1.4:55847352-55847371 | MS.gene94815:CDS | 25.0% |
| ! | AAATTTGTGATTGCAACTTT+GGG | - | chr1.4:55847985-55848004 | MS.gene94815:intron | 25.0% |
| ! | AAGGAAAAAAAAAGGTTGTA+TGG | + | chr1.4:55848623-55848642 | None:intergenic | 25.0% |
| ! | AATAAAAACACAAGGAAAAG+AGG | + | chr1.4:55844453-55844472 | None:intergenic | 25.0% |
| ! | AATGAATGAAATTGTTTGTG+TGG | - | chr1.4:55844322-55844341 | MS.gene94815:intron | 25.0% |
| ! | AATGTGAAAAAAGTAAAGAG+GGG | + | chr1.4:55845690-55845709 | None:intergenic | 25.0% |
| ! | AATTAGATTTCTTAAGCATG+TGG | - | chr1.4:55847169-55847188 | MS.gene94815:intron | 25.0% |
| ! | AATTGTCCTTAAAAAATCCA+TGG | + | chr1.4:55844875-55844894 | None:intergenic | 25.0% |
| ! | ACAAATCTTATGTATAAGGA+CGG | - | chr1.4:55844648-55844667 | MS.gene94815:intron | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr1.4:55845865-55845884 | MS.gene94815:CDS | 25.0% |
| ! | ATTAATTAGCCACATTCATA+AGG | + | chr1.4:55846541-55846560 | None:intergenic | 25.0% |
| ! | ATTATTAATTGAAATCTCCG+TGG | - | chr1.4:55844820-55844839 | MS.gene94815:intron | 25.0% |
| ! | GAAATCTTTAACAATGAGAA+AGG | - | chr1.4:55848195-55848214 | MS.gene94815:intron | 25.0% |
| ! | GAAATGTGAAAAAAGTAAAG+AGG | + | chr1.4:55845692-55845711 | None:intergenic | 25.0% |
| ! | GAAGCAATTTAACTGAAATT+AGG | - | chr1.4:55849431-55849450 | MS.gene94815:CDS | 25.0% |
| ! | GATAGCTGCAAATAAAATAA+AGG | + | chr1.4:55849182-55849201 | None:intergenic | 25.0% |
| ! | GATTCATAGAGATAAATGAT+GGG | + | chr1.4:55846178-55846197 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | - | chr1.4:55845900-55845919 | MS.gene94815:CDS | 25.0% |
| ! | GTTGTAGCATAATGTAATAT+AGG | - | chr1.4:55847450-55847469 | MS.gene94815:intron | 25.0% |
| ! | TAAATTTGTGATTGCAACTT+TGG | - | chr1.4:55847984-55848003 | MS.gene94815:intron | 25.0% |
| ! | TAAGAATGTCTTAAGAGTTA+AGG | + | chr1.4:55844701-55844720 | None:intergenic | 25.0% |
| ! | TATATCTCTTGAACTTCATA+TGG | - | chr1.4:55845212-55845231 | MS.gene94815:intron | 25.0% |
| ! | TATTACAATGAAGTTCCATT+TGG | - | chr1.4:55844472-55844491 | MS.gene94815:intron | 25.0% |
| ! | TCTAAGTAAATTCTCATTGT+TGG | - | chr1.4:55847547-55847566 | MS.gene94815:intron | 25.0% |
| ! | TGAAAAGGTGATTACATTTA+GGG | - | chr1.4:55845880-55845899 | MS.gene94815:CDS | 25.0% |
| ! | TGATTCATAGAGATAAATGA+TGG | + | chr1.4:55846179-55846198 | None:intergenic | 25.0% |
| ! | TTAACACAATCCTATAAAAC+TGG | + | chr1.4:55846310-55846329 | None:intergenic | 25.0% |
| ! | TTAATTCATGGAATGTTAAG+AGG | + | chr1.4:55848935-55848954 | None:intergenic | 25.0% |
| ! | TTATTAATTGAAATCTCCGT+GGG | - | chr1.4:55844821-55844840 | MS.gene94815:intron | 25.0% |
| ! | TTGAAAAGGTGATTACATTT+AGG | - | chr1.4:55845879-55845898 | MS.gene94815:CDS | 25.0% |
| !! | AAAGATAATCTAAAGCAAAC+AGG | - | chr1.4:55846662-55846681 | MS.gene94815:intron | 25.0% |
| !! | AATTCAATTAGCTTGGTTTA+TGG | + | chr1.4:55847660-55847679 | None:intergenic | 25.0% |
| !! | CAACTAAGATGGATATATTT+TGG | + | chr1.4:55847703-55847722 | None:intergenic | 25.0% |
| !! | CACTTGATAATTATATGAGA+AGG | + | chr1.4:55848283-55848302 | None:intergenic | 25.0% |
| !! | CTTGATAATTATATGAGAAG+GGG | + | chr1.4:55848281-55848300 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | - | chr1.4:55845829-55845848 | MS.gene94815:CDS | 25.0% |
| !! | TTGATAATTATATGAGAAGG+GGG | + | chr1.4:55848280-55848299 | None:intergenic | 25.0% |
| !! | TTTATCGTAAATTTGAGATC+AGG | + | chr1.4:55848987-55849006 | None:intergenic | 25.0% |
| !!! | CAAAGTCTTTTAAGATCTAT+TGG | - | chr1.4:55846119-55846138 | MS.gene94815:CDS | 25.0% |
| !!! | CACTAGTTTCAATTCTTTTA+AGG | - | chr1.4:55847950-55847969 | MS.gene94815:intron | 25.0% |
| !!! | CATTGTTTAACATTTGTTGT+TGG | - | chr1.4:55844744-55844763 | MS.gene94815:intron | 25.0% |
| !!! | CTGTATAATTTTAGTCAAAG+TGG | - | chr1.4:55845435-55845454 | MS.gene94815:intron | 25.0% |
| !!! | GAGGTATAACTAATTTTGAT+TGG | + | chr1.4:55844499-55844518 | None:intergenic | 25.0% |
| !!! | TTGATAGTGAGTACTATTAT+GGG | - | chr1.4:55845471-55845490 | MS.gene94815:intron | 25.0% |
| !!! | TTTGATAGTGAGTACTATTA+TGG | - | chr1.4:55845470-55845489 | MS.gene94815:intron | 25.0% |
| AAGTAAATTCTCATTGTTGG+AGG | - | chr1.4:55847550-55847569 | MS.gene94815:intron | 30.0% | |
| ACCATTGCTAATAGTTCTTT+AGG | + | chr1.4:55845310-55845329 | None:intergenic | 30.0% | |
| ACTCAAAAACCTTATGAATG+TGG | - | chr1.4:55846529-55846548 | MS.gene94815:CDS | 30.0% | |
| AGAAATTGTGTTAGAAATCG+TGG | + | chr1.4:55846339-55846358 | None:intergenic | 30.0% | |
| AGGTATTCCTTCACAATATT+TGG | + | chr1.4:55847596-55847615 | None:intergenic | 30.0% | |
| ATCTGAAAAAATTCCACCAT+CGG | - | chr1.4:55848845-55848864 | MS.gene94815:intron | 30.0% | |
| CAAATGGATGGTTACATTAA+GGG | - | chr1.4:55845916-55845935 | MS.gene94815:intron | 30.0% | |
| CAAGTGAAAAATTAGGAGAA+AGG | + | chr1.4:55847001-55847020 | None:intergenic | 30.0% | |
| CAATGTAGGTTACCAAAATA+GGG | + | chr1.4:55848576-55848595 | None:intergenic | 30.0% | |
| CCTGGCATACTTTATTAATT+AGG | - | chr1.4:55849608-55849627 | MS.gene94815:CDS | 30.0% | |
| CTCACTAGACATTATGTTAT+TGG | + | chr1.4:55847134-55847153 | None:intergenic | 30.0% | |
| CTGAAATTAGGAGAAAATCA+AGG | - | chr1.4:55849443-55849462 | MS.gene94815:CDS | 30.0% | |
| GCAATCACAAATTTAAGTCT+TGG | + | chr1.4:55847979-55847998 | None:intergenic | 30.0% | |
| TAATTGAATTTCGCTCTTAC+AGG | - | chr1.4:55847670-55847689 | MS.gene94815:intron | 30.0% | |
| TAGCAGTTAATAACAAACAC+AGG | + | chr1.4:55849485-55849504 | None:intergenic | 30.0% | |
| TCAAATGGATGGTTACATTA+AGG | - | chr1.4:55845915-55845934 | MS.gene94815:intron | 30.0% | |
| TCCTAAAGAACTATTAGCAA+TGG | - | chr1.4:55845306-55845325 | MS.gene94815:intron | 30.0% | |
| TCGTTAAAAGAGTTTCACAT+AGG | - | chr1.4:55846071-55846090 | MS.gene94815:CDS | 30.0% | |
| TGAATGTGTGTTTGCAATAT+AGG | - | chr1.4:55846391-55846410 | MS.gene94815:intron | 30.0% | |
| TGATAATTATATGAGAAGGG+GGG | + | chr1.4:55848279-55848298 | None:intergenic | 30.0% | |
| TTAATAAAGTATGCCAGGTT+TGG | + | chr1.4:55849606-55849625 | None:intergenic | 30.0% | |
| TTAGAAAGTTCACAACAATG+TGG | - | chr1.4:55845280-55845299 | MS.gene94815:intron | 30.0% | |
| TTTGCTCTACCATTAAGATA+GGG | - | chr1.4:55845341-55845360 | MS.gene94815:intron | 30.0% | |
| ! | AACGATCGATTTCAAATTGA+TGG | - | chr1.4:55849046-55849065 | MS.gene94815:intron | 30.0% |
| ! | ACTGTTATGTTTTCTCATTC+TGG | - | chr1.4:55844281-55844300 | MS.gene94815:intron | 30.0% |
| ! | CTATTAGTACTTTTCTCAAG+TGG | - | chr1.4:55847522-55847541 | MS.gene94815:intron | 30.0% |
| ! | GAATCAATATGTGTGCTTTT+TGG | - | chr1.4:55844783-55844802 | MS.gene94815:intron | 30.0% |
| ! | GTTACAAAATTTAGAGCAGA+CGG | - | chr1.4:55848786-55848805 | MS.gene94815:intron | 30.0% |
| ! | GTTATCTAGAGTTTGATTGA+AGG | - | chr1.4:55844989-55845008 | MS.gene94815:CDS | 30.0% |
| ! | TATAGCACCATTGATTAGAA+AGG | + | chr1.4:55848642-55848661 | None:intergenic | 30.0% |
| ! | TATGTGGGAGGTTATATTTT+GGG | - | chr1.4:55848820-55848839 | MS.gene94815:intron | 30.0% |
| ! | TCAATTTACTTTCTAGCAGA+GGG | - | chr1.4:55848136-55848155 | MS.gene94815:intron | 30.0% |
| ! | TCTCCTAATTTTTCACTTGT+GGG | - | chr1.4:55847002-55847021 | MS.gene94815:intron | 30.0% |
| ! | TTACAAAATTTAGAGCAGAC+GGG | - | chr1.4:55848787-55848806 | MS.gene94815:intron | 30.0% |
| ! | TTCAATTTACTTTCTAGCAG+AGG | - | chr1.4:55848135-55848154 | MS.gene94815:intron | 30.0% |
| ! | TTCTCCTAATTTTTCACTTG+TGG | - | chr1.4:55847001-55847020 | MS.gene94815:intron | 30.0% |
| ! | TTTTGCTCTACCATTAAGAT+AGG | - | chr1.4:55845340-55845359 | MS.gene94815:intron | 30.0% |
| !! | AAGCACTAGGAGTATTAAAA+AGG | - | chr1.4:55847103-55847122 | MS.gene94815:intron | 30.0% |
| !! | TTTGTTGGAGCAGTTTTATA+TGG | - | chr1.4:55848900-55848919 | MS.gene94815:intron | 30.0% |
| !!! | CTAATTTTGATTGGTCCAAA+TGG | + | chr1.4:55844490-55844509 | None:intergenic | 30.0% |
| !!! | TAGCTATTTCTTCCCTATTT+TGG | - | chr1.4:55848561-55848580 | MS.gene94815:intron | 30.0% |
| !!! | TGAGTTCATTGATTTTTGTG+AGG | + | chr1.4:55844518-55844537 | None:intergenic | 30.0% |
| AACAGTTCGTAAAGTGATCT+AGG | + | chr1.4:55849072-55849091 | None:intergenic | 35.0% | |
| AATGAAATTGTTTGTGTGGC+AGG | - | chr1.4:55844326-55844345 | MS.gene94815:intron | 35.0% | |
| AATGTCTTAAGAGTTAAGGC+TGG | + | chr1.4:55844697-55844716 | None:intergenic | 35.0% | |
| ACACAATAAAGGAAACCTGA+TGG | + | chr1.4:55846153-55846172 | None:intergenic | 35.0% | |
| AGAATTGAAACTAGTGCTCT+TGG | + | chr1.4:55847946-55847965 | None:intergenic | 35.0% | |
| AGAGCGAAATTCAATTAGCT+TGG | + | chr1.4:55847667-55847686 | None:intergenic | 35.0% | |
| AGGCATCCTAACATCAAAAT+AGG | + | chr1.4:55847389-55847408 | None:intergenic | 35.0% | |
| ATGACAAGGATCAAACAAAG+GGG | + | chr1.4:55848069-55848088 | None:intergenic | 35.0% | |
| ATGCTCAGAAAAGTTTCCTA+AGG | - | chr1.4:55847781-55847800 | MS.gene94815:intron | 35.0% | |
| ATTGTGTTAGAAATCGTGGT+TGG | + | chr1.4:55846335-55846354 | None:intergenic | 35.0% | |
| CAATCAAACTCTAGATAACC+AGG | + | chr1.4:55844988-55845007 | None:intergenic | 35.0% | |
| CATACAAACAAACGACAGTT+TGG | + | chr1.4:55845767-55845786 | None:intergenic | 35.0% | |
| CATGACAAGGATCAAACAAA+GGG | + | chr1.4:55848070-55848089 | None:intergenic | 35.0% | |
| CCATGTACCAAATATTGTGA+AGG | - | chr1.4:55847586-55847605 | MS.gene94815:intron | 35.0% | |
| CCTTCACAATATTTGGTACA+TGG | + | chr1.4:55847589-55847608 | None:intergenic | 35.0% | |
| CGAACATGTATATTCACAGA+AGG | - | chr1.4:55847292-55847311 | MS.gene94815:intron | 35.0% | |
| CTCACTATCAAACAAAAGCT+AGG | + | chr1.4:55845462-55845481 | None:intergenic | 35.0% | |
| GAATAGAACCACTCAATTCA+AGG | - | chr1.4:55844416-55844435 | MS.gene94815:intron | 35.0% | |
| GATGCATTCATACACAAGAA+TGG | - | chr1.4:55848089-55848108 | MS.gene94815:intron | 35.0% | |
| GCAATGTAGGTTACCAAAAT+AGG | + | chr1.4:55848577-55848596 | None:intergenic | 35.0% | |
| GCAATTAGATGAACAGACAT+AGG | + | chr1.4:55847616-55847635 | None:intergenic | 35.0% | |
| TCATGACAAGGATCAAACAA+AGG | + | chr1.4:55848071-55848090 | None:intergenic | 35.0% | |
| TCCTATAAAACTGGTATGTG+AGG | + | chr1.4:55846301-55846320 | None:intergenic | 35.0% | |
| TGCTAATTTATCCTACAACG+TGG | - | chr1.4:55847253-55847272 | MS.gene94815:intron | 35.0% | |
| TGTATGAATGCATCATGACA+AGG | + | chr1.4:55848083-55848102 | None:intergenic | 35.0% | |
| TGTGGATACTTCTTCATTTG+TGG | - | chr1.4:55846627-55846646 | MS.gene94815:intron | 35.0% | |
| TTATTGATACAACTGGTGCT+GGG | - | chr1.4:55848871-55848890 | MS.gene94815:intron | 35.0% | |
| ! | ATCGTAAATTTGAGATCAGG+CGG | + | chr1.4:55848984-55849003 | None:intergenic | 35.0% |
| ! | ATTGCAACTTTGGGAAAAGA+CGG | - | chr1.4:55847994-55848013 | MS.gene94815:intron | 35.0% |
| ! | CTCCTAATTTTTCACTTGTG+GGG | - | chr1.4:55847003-55847022 | MS.gene94815:intron | 35.0% |
| ! | GAATTGAGTGGTTCTATTCT+TGG | + | chr1.4:55844415-55844434 | None:intergenic | 35.0% |
| ! | GTATGTGGGAGGTTATATTT+TGG | - | chr1.4:55848819-55848838 | MS.gene94815:intron | 35.0% |
| ! | GTTTTATGTAGCTATTACCG+AGG | + | chr1.4:55848251-55848270 | None:intergenic | 35.0% |
| ! | TCACAATGACAGGATTTTCA+GGG | + | chr1.4:55844241-55844260 | None:intergenic | 35.0% |
| ! | TGAGAGAGTGTAGTTAAAGT+GGG | + | chr1.4:55845169-55845188 | None:intergenic | 35.0% |
| ! | TGATTTGAGTAACTTGCCTT+AGG | + | chr1.4:55847800-55847819 | None:intergenic | 35.0% |
| ! | TTCCTTTTCCATTTGTTTCC+AGG | - | chr1.4:55846873-55846892 | MS.gene94815:intron | 35.0% |
| ! | TTTTTATTGCGTTAACCCTC+CGG | - | chr1.4:55844945-55844964 | MS.gene94815:CDS | 35.0% |
| !! | AATGATGGGTGACACAATAA+AGG | + | chr1.4:55846164-55846183 | None:intergenic | 35.0% |
| !! | ACCTCACATACCAGTTTTAT+AGG | - | chr1.4:55846297-55846316 | MS.gene94815:intron | 35.0% |
| !! | AGGTTGTATGGTGTTATTGA+TGG | + | chr1.4:55848611-55848630 | None:intergenic | 35.0% |
| !! | GGTTGTATGGTGTTATTGAT+GGG | + | chr1.4:55848610-55848629 | None:intergenic | 35.0% |
| AAATTGTTTGTGTGGCAGGT+TGG | - | chr1.4:55844330-55844349 | MS.gene94815:intron | 40.0% | |
| AACACAAGGAAAAGAGGAAG+AGG | + | chr1.4:55844447-55844466 | None:intergenic | 40.0% | |
| AAGAAGACACTCACAATGAC+AGG | + | chr1.4:55844251-55844270 | None:intergenic | 40.0% | |
| AATAAAGGAAACCTGATGGC+AGG | + | chr1.4:55846149-55846168 | None:intergenic | 40.0% | |
| AATTGTTTGTGTGGCAGGTT+GGG | - | chr1.4:55844331-55844350 | MS.gene94815:intron | 40.0% | |
| ACACTTAGAAGAAGTGGATG+TGG | - | chr1.4:55848162-55848181 | MS.gene94815:intron | 40.0% | |
| ACGCTCATGATCATCACTAT+TGG | + | chr1.4:55846205-55846224 | None:intergenic | 40.0% | |
| AGAGGGGTTACATTAAGAGA+CGG | + | chr1.4:55845674-55845693 | None:intergenic | 40.0% | |
| AGATGACGTGGGAAAGAAAA+TGG | + | chr1.4:55845548-55845567 | None:intergenic | 40.0% | |
| AGCCCCACAAGTGAAAAATT+AGG | + | chr1.4:55847008-55847027 | None:intergenic | 40.0% | |
| AGGATGAACCTTGAATTGAG+TGG | + | chr1.4:55844427-55844446 | None:intergenic | 40.0% | |
| AGTAATGGTGTACATACGTG+TGG | + | chr1.4:55846945-55846964 | None:intergenic | 40.0% | |
| ATGCTTCAGAAATGTGCAGA+TGG | - | chr1.4:55848024-55848043 | MS.gene94815:intron | 40.0% | |
| ATTGAATGACCTTCTGGACT+TGG | - | chr1.4:55847745-55847764 | MS.gene94815:intron | 40.0% | |
| ATTGGATGTGCAACTTCTGT+GGG | - | chr1.4:55844848-55844867 | MS.gene94815:intron | 40.0% | |
| CATTTGTTTCCAGGTCTCAA+AGG | - | chr1.4:55846882-55846901 | MS.gene94815:intron | 40.0% | |
| CCTTTCAGCATCAACTAAGA+TGG | + | chr1.4:55847714-55847733 | None:intergenic | 40.0% | |
| CGAGTCACGTTTATTGATCT+TGG | - | chr1.4:55848958-55848977 | MS.gene94815:intron | 40.0% | |
| CGCTCATGATCATCACTATT+GGG | + | chr1.4:55846204-55846223 | None:intergenic | 40.0% | |
| CGTGACTCGCATTTAATTCA+TGG | + | chr1.4:55848947-55848966 | None:intergenic | 40.0% | |
| CTTACCACATGAGAAGCAAA+GGG | + | chr1.4:55849235-55849254 | None:intergenic | 40.0% | |
| CTTATTGATACAACTGGTGC+TGG | - | chr1.4:55848870-55848889 | MS.gene94815:intron | 40.0% | |
| GACCTGGAAACAAATGGAAA+AGG | + | chr1.4:55846878-55846897 | None:intergenic | 40.0% | |
| GATGACGTGGGAAAGAAAAT+GGG | + | chr1.4:55845547-55845566 | None:intergenic | 40.0% | |
| GGATTTCTTTCTTCGAGAAC+CGG | + | chr1.4:55844967-55844986 | None:intergenic | 40.0% | |
| GTGTTTGCAATATAGGTGCA+AGG | - | chr1.4:55846398-55846417 | MS.gene94815:intron | 40.0% | |
| GTTATTGATGGGAGTCTTTG+TGG | + | chr1.4:55848599-55848618 | None:intergenic | 40.0% | |
| GTTCTCGAAGAAAGAAATCC+TGG | - | chr1.4:55844967-55844986 | MS.gene94815:CDS | 40.0% | |
| GTTGTATCAATAAGCTCCGA+TGG | + | chr1.4:55848864-55848883 | None:intergenic | 40.0% | |
| TCCATGTCTGTGAAATGTGT+CGG | + | chr1.4:55847906-55847925 | None:intergenic | 40.0% | |
| TCGGAGCTTATTGATACAAC+TGG | - | chr1.4:55848864-55848883 | MS.gene94815:intron | 40.0% | |
| TGCTCTTGTCATTGCTAAAG+AGG | - | chr1.4:55847414-55847433 | MS.gene94815:intron | 40.0% | |
| TGGATGGTTACATTAAGGGA+CGG | - | chr1.4:55845920-55845939 | MS.gene94815:intron | 40.0% | |
| TGTTGGTGTACTCATCTCTT+TGG | - | chr1.4:55844761-55844780 | MS.gene94815:intron | 40.0% | |
| TTGCAATATAGGTGCAAGGT+GGG | - | chr1.4:55846402-55846421 | MS.gene94815:intron | 40.0% | |
| TTGGCATGTGATGGTATTAC+AGG | - | chr1.4:55849524-55849543 | MS.gene94815:intron | 40.0% | |
| TTTGCAATATAGGTGCAAGG+TGG | - | chr1.4:55846401-55846420 | MS.gene94815:intron | 40.0% | |
| ! | AAATTTAGAGCAGACGGGAT+AGG | - | chr1.4:55848792-55848811 | MS.gene94815:intron | 40.0% |
| ! | CATTTTCTCTGGTGAGAAGT+TGG | + | chr1.4:55849209-55849228 | None:intergenic | 40.0% |
| ! | CCATCTTAGTTGATGCTGAA+AGG | - | chr1.4:55847711-55847730 | MS.gene94815:intron | 40.0% |
| ! | CTCACAATGACAGGATTTTC+AGG | + | chr1.4:55844242-55844261 | None:intergenic | 40.0% |
| ! | GTGAGAGAGTGTAGTTAAAG+TGG | + | chr1.4:55845170-55845189 | None:intergenic | 40.0% |
| ! | TATTGATACAACTGGTGCTG+GGG | - | chr1.4:55848872-55848891 | MS.gene94815:intron | 40.0% |
| ! | TTTTCTTTCCCACGTCATCT+CGG | - | chr1.4:55845548-55845567 | MS.gene94815:intron | 40.0% |
| !! | CTTTGAGACCTGGAAACAAA+TGG | + | chr1.4:55846884-55846903 | None:intergenic | 40.0% |
| !! | TGTTTGTTGTTGGCATGTGA+TGG | - | chr1.4:55849515-55849534 | MS.gene94815:intron | 40.0% |
| !!! | CTATTCTTGGTGTCTGGTTT+TGG | + | chr1.4:55844402-55844421 | None:intergenic | 40.0% |
| !!! | GAGTGGCCTATTTTGATGTT+AGG | - | chr1.4:55847380-55847399 | MS.gene94815:CDS | 40.0% |
| !!! | GTGGGTCCATGGATTTTTTA+AGG | - | chr1.4:55844866-55844885 | MS.gene94815:intron | 40.0% |
| AAAGTAGACCGAGATGACGT+GGG | + | chr1.4:55845559-55845578 | None:intergenic | 45.0% | |
| AATGTAGAGCTCTTGGAGCT+AGG | - | chr1.4:55849556-55849575 | MS.gene94815:intron | 45.0% | |
| ACAAGGATCAAACAAAGGGG+TGG | + | chr1.4:55848066-55848085 | None:intergenic | 45.0% | |
| ACGGGATAGGATCAGTATGT+GGG | - | chr1.4:55848805-55848824 | MS.gene94815:intron | 45.0% | |
| AGATCTTCCGGTACCATTGT+AGG | + | chr1.4:55847322-55847341 | None:intergenic | 45.0% | |
| AGCACAAGTCAACGCATTTC+CGG | + | chr1.4:55846435-55846454 | None:intergenic | 45.0% | |
| AGGATCTCCTACAATGGTAC+CGG | - | chr1.4:55847312-55847331 | MS.gene94815:intron | 45.0% | |
| AGGTCATTCAATCCTTCCCT+TGG | + | chr1.4:55847737-55847756 | None:intergenic | 45.0% | |
| AGGTTTGGATCAGTGCGATA+TGG | + | chr1.4:55849591-55849610 | None:intergenic | 45.0% | |
| ATAGAGGAGCTAGAAGCTGA+GGG | - | chr1.4:55846604-55846623 | MS.gene94815:intron | 45.0% | |
| ATGGTTACATTAAGGGACGG+AGG | - | chr1.4:55845923-55845942 | MS.gene94815:intron | 45.0% | |
| CAAACAAAGGGGTGGAAAAG+AGG | + | chr1.4:55848058-55848077 | None:intergenic | 45.0% | |
| CACAGAAGGATCTCCTACAA+TGG | - | chr1.4:55847306-55847325 | MS.gene94815:intron | 45.0% | |
| CATAATCAGCCAAGTCCAGA+AGG | + | chr1.4:55847757-55847776 | None:intergenic | 45.0% | |
| CATTGGATGTGCAACTTCTG+TGG | - | chr1.4:55844847-55844866 | MS.gene94815:intron | 45.0% | |
| CATTTCACAGACATGGACAG+AGG | - | chr1.4:55847909-55847928 | MS.gene94815:intron | 45.0% | |
| GCTTACCACATGAGAAGCAA+AGG | + | chr1.4:55849236-55849255 | None:intergenic | 45.0% | |
| GGAAGGATTGAATGACCTTC+TGG | - | chr1.4:55847739-55847758 | MS.gene94815:intron | 45.0% | |
| GGGTTACATTAAGAGACGGA+GGG | + | chr1.4:55845670-55845689 | None:intergenic | 45.0% | |
| GGGTTCACACTTAGAAGAAG+TGG | - | chr1.4:55848156-55848175 | MS.gene94815:intron | 45.0% | |
| GTATCAATAAGCTCCGATGG+TGG | + | chr1.4:55848861-55848880 | None:intergenic | 45.0% | |
| GTTTCCAGGTCTCAAAGGAA+GGG | - | chr1.4:55846887-55846906 | MS.gene94815:intron | 45.0% | |
| TAACTACACTCTCTCACGCT+TGG | - | chr1.4:55845173-55845192 | MS.gene94815:intron | 45.0% | |
| TAGGTTGCAAATGACGCTCA+GGG | - | chr1.4:55846571-55846590 | MS.gene94815:intron | 45.0% | |
| TCCGACACATTTCACAGACA+TGG | - | chr1.4:55847902-55847921 | MS.gene94815:intron | 45.0% | |
| TCCTACAACGTGGAACATTC+AGG | - | chr1.4:55847263-55847282 | MS.gene94815:intron | 45.0% | |
| TCCTGAATGTTCCACGTTGT+AGG | + | chr1.4:55847267-55847286 | None:intergenic | 45.0% | |
| TGCAATATAGGTGCAAGGTG+GGG | - | chr1.4:55846403-55846422 | MS.gene94815:intron | 45.0% | |
| TGCATTGAATGGAGCTAGAG+TGG | - | chr1.4:55847363-55847382 | MS.gene94815:CDS | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | - | chr1.4:55845924-55845943 | MS.gene94815:intron | 45.0% | |
| TGTTTCCAGGTCTCAAAGGA+AGG | - | chr1.4:55846886-55846905 | MS.gene94815:intron | 45.0% | |
| TTCTTTCTTCGAGAACCGGA+GGG | + | chr1.4:55844963-55844982 | None:intergenic | 45.0% | |
| TTTCTTTCTTCGAGAACCGG+AGG | + | chr1.4:55844964-55844983 | None:intergenic | 45.0% | |
| TTTGCACGCGAAAGATCTTC+CGG | + | chr1.4:55847334-55847353 | None:intergenic | 45.0% | |
| ! | AGTTGATGCTGAAAGGCCAA+GGG | - | chr1.4:55847718-55847737 | MS.gene94815:intron | 45.0% |
| ! | ATATCGCACTGATCCAAACC+TGG | - | chr1.4:55849590-55849609 | MS.gene94815:CDS | 45.0% |
| ! | GCAAAGGGCAACATTTTCTC+TGG | + | chr1.4:55849220-55849239 | None:intergenic | 45.0% |
| ! | TAGTTGATGCTGAAAGGCCA+AGG | - | chr1.4:55847717-55847736 | MS.gene94815:intron | 45.0% |
| !! | ATGACAGGATTTTCAGGGAG+AGG | + | chr1.4:55844236-55844255 | None:intergenic | 45.0% |
| !! | GTGGTTCTATTCTTGGTGTC+TGG | + | chr1.4:55844408-55844427 | None:intergenic | 45.0% |
| !! | TCAGGGTAGGGTTTTGATAG+AGG | - | chr1.4:55846588-55846607 | MS.gene94815:intron | 45.0% |
| !! | TTGACTTGTGCTGCTCGTTT+GGG | - | chr1.4:55846443-55846462 | MS.gene94815:CDS | 45.0% |
| !!! | TTTAACTTAATTATAATTTT+TGG | + | chr1.4:55847080-55847099 | None:intergenic | 5.0% |
| AAAGGAAACCTGATGGCAGG+TGG | + | chr1.4:55846146-55846165 | None:intergenic | 50.0% | |
| AGGGAGAGGAAAAGCAGTGT+TGG | + | chr1.4:55844222-55844241 | None:intergenic | 50.0% | |
| CAAAGTAGACCGAGATGACG+TGG | + | chr1.4:55845560-55845579 | None:intergenic | 50.0% | |
| CTAGGTTGCAAATGACGCTC+AGG | - | chr1.4:55846570-55846589 | MS.gene94815:intron | 50.0% | |
| GAAATCTCCGTGGGAGTCAT+TGG | - | chr1.4:55844830-55844849 | MS.gene94815:intron | 50.0% | |
| GACGGGATAGGATCAGTATG+TGG | - | chr1.4:55848804-55848823 | MS.gene94815:intron | 50.0% | |
| GATAGAGGAGCTAGAAGCTG+AGG | - | chr1.4:55846603-55846622 | MS.gene94815:intron | 50.0% | |
| GCAATATAGGTGCAAGGTGG+GGG | - | chr1.4:55846404-55846423 | MS.gene94815:intron | 50.0% | |
| GCAATGACAAGAGCAGTTGC+AGG | + | chr1.4:55847409-55847428 | None:intergenic | 50.0% | |
| GCTGCTCAATGTAGAGCTCT+TGG | - | chr1.4:55849549-55849568 | MS.gene94815:intron | 50.0% | |
| GGATAGGATCAGTATGTGGG+AGG | - | chr1.4:55848808-55848827 | MS.gene94815:intron | 50.0% | |
| GGGAGTCTTTGTGGCAATGT+AGG | + | chr1.4:55848590-55848609 | None:intergenic | 50.0% | |
| GGGGTTACATTAAGAGACGG+AGG | + | chr1.4:55845671-55845690 | None:intergenic | 50.0% | |
| GTTGCCCTTTGCTTCTCATG+TGG | - | chr1.4:55849228-55849247 | MS.gene94815:intron | 50.0% | |
| TGCAAATGACGCTCAGGGTA+GGG | - | chr1.4:55846576-55846595 | MS.gene94815:intron | 50.0% | |
| TGCACATCCAATGACTCCCA+CGG | + | chr1.4:55844840-55844859 | None:intergenic | 50.0% | |
| TTGCAAATGACGCTCAGGGT+AGG | - | chr1.4:55846575-55846594 | MS.gene94815:intron | 50.0% | |
| ! | TTTGTGTGGCAGGTTGGGTT+TGG | - | chr1.4:55844336-55844355 | MS.gene94815:intron | 50.0% |
| !! | GTTGACTTGTGCTGCTCGTT+TGG | - | chr1.4:55846442-55846461 | MS.gene94815:CDS | 50.0% |
| !! | TAGTCCCTTCCTTTGAGACC+TGG | + | chr1.4:55846894-55846913 | None:intergenic | 50.0% |
| AGAGCTCTTGGAGCTAGGAG+TGG | - | chr1.4:55849561-55849580 | MS.gene94815:intron | 55.0% | |
| AGCTATTACCGAGGCAACGC+AGG | + | chr1.4:55848242-55848261 | None:intergenic | 55.0% | |
| ATTACCGAGGCAACGCAGGT+TGG | + | chr1.4:55848238-55848257 | None:intergenic | 55.0% | |
| GATGCTGAAAGGCCAAGGGA+AGG | - | chr1.4:55847722-55847741 | MS.gene94815:intron | 55.0% | |
| GTGCAACTTCTGTGGGTCCA+TGG | - | chr1.4:55844855-55844874 | MS.gene94815:intron | 55.0% | |
| GTGCAAGGTGGGGGAAATAC+CGG | - | chr1.4:55846413-55846432 | MS.gene94815:CDS | 55.0% | |
| ! | GGTGCTGGGGATGCATTTGT+TGG | - | chr1.4:55848885-55848904 | MS.gene94815:intron | 55.0% |
| CATGCCAACCTGCGTTGCCT+CGG | - | chr1.4:55848231-55848250 | MS.gene94815:intron | 60.0% | |
| CTATTGGGCCACCTGCCATC+AGG | - | chr1.4:55846135-55846154 | MS.gene94815:intron | 60.0% | |
| GGAGCTAGAAGCTGAGGGTG+TGG | - | chr1.4:55846609-55846628 | MS.gene94815:intron | 60.0% | |
| ! | GTGTGGCAGGTTGGGTTTGG+TGG | - | chr1.4:55844339-55844358 | MS.gene94815:intron | 60.0% |
| !! | CAGGTTGGGTTTGGTGGCGT+TGG | - | chr1.4:55844345-55844364 | MS.gene94815:intron | 60.0% |
| ! | CGAGGCAACGCAGGTTGGCA+TGG | + | chr1.4:55848233-55848252 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 55844212 | 55849629 | 55844212 | ID=MS.gene94815 |
| chr1.4 | mRNA | 55844212 | 55849629 | 55844212 | ID=MS.gene94815.t1;Parent=MS.gene94815 |
| chr1.4 | exon | 55849585 | 55849629 | 55849585 | ID=MS.gene94815.t1.exon1;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55849585 | 55849629 | 55849585 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| chr1.4 | exon | 55849404 | 55849493 | 55849404 | ID=MS.gene94815.t1.exon2;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55849404 | 55849493 | 55849404 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| chr1.4 | exon | 55847351 | 55847428 | 55847351 | ID=MS.gene94815.t1.exon3;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55847351 | 55847428 | 55847351 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| chr1.4 | exon | 55847193 | 55847267 | 55847193 | ID=MS.gene94815.t1.exon4;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55847193 | 55847267 | 55847193 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| chr1.4 | exon | 55846894 | 55846946 | 55846894 | ID=MS.gene94815.t1.exon5;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55846894 | 55846946 | 55846894 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| chr1.4 | exon | 55846406 | 55846556 | 55846406 | ID=MS.gene94815.t1.exon6;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55846406 | 55846556 | 55846406 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| chr1.4 | exon | 55846039 | 55846149 | 55846039 | ID=MS.gene94815.t1.exon7;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55846039 | 55846149 | 55846039 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| chr1.4 | exon | 55845796 | 55845922 | 55845796 | ID=MS.gene94815.t1.exon8;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55845796 | 55845922 | 55845796 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| chr1.4 | exon | 55845589 | 55845686 | 55845589 | ID=MS.gene94815.t1.exon9;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55845589 | 55845686 | 55845589 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| chr1.4 | exon | 55844920 | 55845058 | 55844920 | ID=MS.gene94815.t1.exon10;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55844920 | 55845058 | 55844920 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| chr1.4 | exon | 55844592 | 55844644 | 55844592 | ID=MS.gene94815.t1.exon11;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55844592 | 55844644 | 55844592 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| chr1.4 | exon | 55844212 | 55844295 | 55844212 | ID=MS.gene94815.t1.exon12;Parent=MS.gene94815.t1 |
| chr1.4 | CDS | 55844212 | 55844295 | 55844212 | ID=cds.MS.gene94815.t1;Parent=MS.gene94815.t1 |
| Gene Sequence |
| Protein sequence |
