Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94998.t1 | XP_013467157.1 | 95.7 | 421 | 18 | 0 | 3 | 423 | 7 | 427 | 7.40E-235 | 822.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94998.t1 | Q9NRX5 | 25.4 | 366 | 220 | 7 | 95 | 409 | 90 | 453 | 2.3e-27 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94998.t1 | A0A072VIB5 | 95.7 | 421 | 18 | 0 | 3 | 423 | 7 | 427 | 5.3e-235 | 822.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94998 | MS.gene05930 | PPI |
| MS.gene94998 | MS.gene04773 | PPI |
| MS.gene94998 | MS.gene015739 | PPI |
| MS.gene94998 | MS.gene049133 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94998.t1 | MTR_1g046480 | 95.724 | 421 | 18 | 0 | 3 | 423 | 7 | 427 | 0.0 | 813 |
| MS.gene94998.t1 | MTR_8g103740 | 50.000 | 378 | 186 | 3 | 24 | 400 | 11 | 386 | 1.59e-127 | 374 |
| MS.gene94998.t1 | MTR_6g086060 | 49.468 | 376 | 184 | 5 | 39 | 410 | 28 | 401 | 4.60e-127 | 373 |
| MS.gene94998.t1 | MTR_8g103740 | 51.839 | 299 | 142 | 2 | 109 | 406 | 1 | 298 | 1.24e-112 | 333 |
| MS.gene94998.t1 | MTR_8g103740 | 53.140 | 207 | 97 | 0 | 200 | 406 | 1 | 207 | 2.06e-80 | 247 |
| MS.gene94998.t1 | MTR_2g022060 | 30.105 | 382 | 242 | 5 | 47 | 406 | 28 | 406 | 5.36e-55 | 187 |
| MS.gene94998.t1 | MTR_7g057720 | 28.982 | 383 | 244 | 9 | 47 | 406 | 31 | 408 | 3.76e-46 | 164 |
| MS.gene94998.t1 | MTR_7g057720 | 27.638 | 398 | 247 | 9 | 47 | 406 | 31 | 425 | 4.66e-43 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94998.t1 | AT2G33205 | 61.743 | 413 | 154 | 3 | 1 | 410 | 1 | 412 | 0.0 | 520 |
| MS.gene94998.t1 | AT2G33205 | 61.446 | 415 | 154 | 4 | 1 | 410 | 1 | 414 | 0.0 | 515 |
| MS.gene94998.t1 | AT2G33205 | 61.446 | 415 | 154 | 4 | 1 | 410 | 1 | 414 | 0.0 | 515 |
| MS.gene94998.t1 | AT2G33205 | 61.809 | 398 | 146 | 4 | 1 | 393 | 1 | 397 | 1.24e-174 | 494 |
| MS.gene94998.t1 | AT2G33205 | 60.428 | 374 | 142 | 4 | 1 | 369 | 1 | 373 | 1.56e-157 | 449 |
| MS.gene94998.t1 | AT2G33205 | 65.190 | 316 | 106 | 3 | 98 | 410 | 5 | 319 | 2.26e-145 | 417 |
| MS.gene94998.t1 | AT2G33205 | 65.902 | 305 | 100 | 3 | 109 | 410 | 1 | 304 | 2.41e-142 | 409 |
| MS.gene94998.t1 | AT2G33205 | 58.663 | 329 | 132 | 3 | 1 | 326 | 1 | 328 | 3.97e-131 | 381 |
| MS.gene94998.t1 | AT2G33205 | 58.663 | 329 | 132 | 3 | 1 | 326 | 1 | 328 | 3.97e-131 | 381 |
| MS.gene94998.t1 | AT3G24460 | 47.872 | 376 | 191 | 2 | 35 | 406 | 28 | 402 | 1.46e-128 | 377 |
| MS.gene94998.t1 | AT3G24460 | 47.872 | 376 | 191 | 2 | 35 | 406 | 28 | 402 | 1.46e-128 | 377 |
| MS.gene94998.t1 | AT4G13345 | 49.444 | 360 | 181 | 1 | 47 | 406 | 33 | 391 | 3.48e-126 | 370 |
| MS.gene94998.t1 | AT4G13345 | 48.889 | 360 | 183 | 1 | 47 | 406 | 33 | 391 | 5.00e-125 | 367 |
| MS.gene94998.t1 | AT4G13345 | 48.889 | 360 | 183 | 1 | 47 | 406 | 33 | 391 | 5.00e-125 | 367 |
| MS.gene94998.t1 | AT4G13345 | 49.568 | 347 | 174 | 1 | 47 | 393 | 33 | 378 | 8.24e-120 | 354 |
| MS.gene94998.t1 | AT4G13345 | 47.988 | 323 | 167 | 1 | 47 | 369 | 33 | 354 | 2.26e-104 | 313 |
| MS.gene94998.t1 | AT4G13345 | 46.457 | 254 | 135 | 1 | 47 | 300 | 33 | 285 | 1.44e-70 | 225 |
| MS.gene94998.t1 | AT4G13345 | 46.457 | 254 | 135 | 1 | 47 | 300 | 33 | 285 | 1.44e-70 | 225 |
| MS.gene94998.t1 | AT3G06170 | 30.446 | 381 | 241 | 6 | 47 | 406 | 29 | 406 | 2.06e-51 | 178 |
| MS.gene94998.t1 | AT1G16180 | 28.125 | 384 | 248 | 7 | 47 | 406 | 31 | 410 | 2.45e-42 | 154 |
| MS.gene94998.t1 | AT1G16180 | 28.125 | 384 | 248 | 7 | 47 | 406 | 31 | 410 | 2.45e-42 | 154 |
Find 75 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACGCCCGTTATTATTT+TGG | 0.172149 | 1.1:+29359469 | MS.gene94998:CDS |
| CATTGATTCCAAATGCTTTC+AGG | 0.204290 | 1.1:+29361657 | MS.gene94998:CDS |
| AACCACTATTTCCAATTTCT+TGG | 0.209768 | 1.1:-29361459 | None:intergenic |
| GTTATTTGTCTCACATCTTA+TGG | 0.217842 | 1.1:-29361437 | None:intergenic |
| AGCCAAAACAATTGCAAATA+TGG | 0.258542 | 1.1:-29361620 | None:intergenic |
| TGCCATATTTGCAATTGTTT+TGG | 0.262932 | 1.1:+29361618 | MS.gene94998:CDS |
| TATTCCACCAAATGATAAAA+TGG | 0.276054 | 1.1:-29360735 | None:intergenic |
| GAGACAAATAACCAAGAAAT+TGG | 0.290791 | 1.1:+29361448 | MS.gene94998:CDS |
| TCACAAATTGTACAAATATA+TGG | 0.296408 | 1.1:+29360392 | MS.gene94998:CDS |
| CTTGGTAACAGGTGCTCCTT+TGG | 0.300859 | 1.1:+29360895 | MS.gene94998:intron |
| GTGATTTACCTGAAAGCATT+TGG | 0.310592 | 1.1:-29361665 | None:intergenic |
| AATTCTTCTTGCTGTAATTC+TGG | 0.335471 | 1.1:+29361035 | MS.gene94998:CDS |
| CAATTGCAAATATGGCAATA+AGG | 0.374529 | 1.1:-29361612 | None:intergenic |
| AACCAAGAAATTGGAAATAG+TGG | 0.389373 | 1.1:+29361457 | MS.gene94998:CDS |
| GTCTCACATCTTATGGTGGC+AGG | 0.390074 | 1.1:-29361430 | None:intergenic |
| TCATTTGGTGGAATAAGTAT+TGG | 0.392219 | 1.1:+29360743 | MS.gene94998:CDS |
| GGGGTTCTCCGTGTGAGTTT+AGG | 0.395668 | 1.1:+29359941 | MS.gene94998:CDS |
| ACTTTGTTCTGTCTCACAAT+TGG | 0.398300 | 1.1:-29362381 | None:intergenic |
| TGCAATGTTATTCATCAGTT+GGG | 0.405258 | 1.1:+29362012 | MS.gene94998:CDS |
| TTTACAGATATCAAAGTTTG+TGG | 0.407120 | 1.1:+29359887 | MS.gene94998:intron |
| GGAATCAATGCCTGTGGAAA+AGG | 0.414630 | 1.1:-29361644 | None:intergenic |
| GGAAGAAGTAATATCTTCAT+TGG | 0.428110 | 1.1:+29359405 | MS.gene94998:CDS |
| TTGCAATGTTATTCATCAGT+TGG | 0.429589 | 1.1:+29362011 | MS.gene94998:CDS |
| ATAGTATACCTTTGAATGTA+AGG | 0.434180 | 1.1:-29361064 | None:intergenic |
| TGATAGGCAGAGGGGTCCTC+TGG | 0.434826 | 1.1:+29359384 | MS.gene94998:CDS |
| GAAATTCATGGCATTCTAGA+TGG | 0.439114 | 1.1:+29360312 | MS.gene94998:CDS |
| TATAATGCCAAAATAATAAC+GGG | 0.454260 | 1.1:-29359476 | None:intergenic |
| ATCAAAGTTTGTGGAAATGA+AGG | 0.457821 | 1.1:+29359896 | MS.gene94998:CDS |
| GATGATATTCCTTACAGCTA+TGG | 0.466935 | 1.1:+29361950 | MS.gene94998:CDS |
| TTTATATTGGTGCTATATGT+GGG | 0.469364 | 1.1:+29360938 | MS.gene94998:CDS |
| ATATTGTTCATGTTAGTGAT+AGG | 0.469895 | 1.1:+29359368 | MS.gene94998:CDS |
| GAAATAGCTCGTATTGGTGC+AGG | 0.472544 | 1.1:+29360594 | MS.gene94998:CDS |
| ATATAATGCCAAAATAATAA+CGG | 0.477224 | 1.1:-29359477 | None:intergenic |
| GCAGGTGAAATAGCTCGTAT+TGG | 0.478741 | 1.1:+29360588 | MS.gene94998:intron |
| TGTGAGACAGAACAAAGTTA+TGG | 0.485662 | 1.1:+29362386 | MS.gene94998:CDS |
| GGTCATATCCTTACATTCAA+AGG | 0.491318 | 1.1:+29361056 | MS.gene94998:CDS |
| ATAGAACTTACAACGAATCC+AGG | 0.494801 | 1.1:-29359557 | None:intergenic |
| TATGTGAAGGTAGAAATTCA+TGG | 0.501497 | 1.1:+29360300 | MS.gene94998:CDS |
| AAGAAATTGGAAATAGTGGT+TGG | 0.507471 | 1.1:+29361461 | MS.gene94998:CDS |
| TTCATGTTAGTGATAGGCAG+AGG | 0.526988 | 1.1:+29359374 | MS.gene94998:CDS |
| TATATTTGTACAATTTGTGA+AGG | 0.530511 | 1.1:-29360389 | None:intergenic |
| TTAGATGGAGCATTGATGTT+GGG | 0.535180 | 1.1:+29362139 | MS.gene94998:intron |
| TATGTTGGTGTGCAATCAGA+AGG | 0.545171 | 1.1:+29361204 | MS.gene94998:CDS |
| CTGACTCAGTTGATGCATGA+TGG | 0.552921 | 1.1:+29362436 | MS.gene94998:CDS |
| ATTTGTGAAGGGATGAAGAA+TGG | 0.557041 | 1.1:-29360377 | None:intergenic |
| TGCAAAGTACATTGCTCCCA+AGG | 0.558340 | 1.1:-29361993 | None:intergenic |
| TTCATGGCATTCTAGATGGT+GGG | 0.561987 | 1.1:+29360316 | MS.gene94998:CDS |
| ATATTTGTACAATTTGTGAA+GGG | 0.572172 | 1.1:-29360388 | None:intergenic |
| CTTAGATGGAGCATTGATGT+TGG | 0.573927 | 1.1:+29362138 | MS.gene94998:intron |
| ATTCATGGCATTCTAGATGG+TGG | 0.575183 | 1.1:+29360315 | MS.gene94998:CDS |
| ATTTGTCTCACATCTTATGG+TGG | 0.581422 | 1.1:-29361434 | None:intergenic |
| TAATTATTGCAGGTTCATAG+AGG | 0.585126 | 1.1:+29361140 | MS.gene94998:intron |
| GATAATGATACAACTATGCA+AGG | 0.586049 | 1.1:+29362408 | MS.gene94998:CDS |
| ATGTTGGGTGGATAAGTACA+TGG | 0.588146 | 1.1:+29362154 | MS.gene94998:CDS |
| TGATAATGAATCTTGTTGCA+TGG | 0.591995 | 1.1:+29359503 | MS.gene94998:CDS |
| TCATGTTAGTGATAGGCAGA+GGG | 0.592097 | 1.1:+29359375 | MS.gene94998:CDS |
| ATGGACAAAGTGTTCTACCC+TGG | 0.592870 | 1.1:+29359539 | MS.gene94998:CDS |
| GGGTGAAGGTTCTCAATGAG+TGG | 0.600602 | 1.1:+29362175 | MS.gene94998:CDS |
| GATGGAGCATTGATGTTGGG+TGG | 0.603110 | 1.1:+29362142 | MS.gene94998:intron |
| GAACACTTTGTCCATAATCA+CGG | 0.614777 | 1.1:-29359531 | None:intergenic |
| TTGAAGAATGAGTGCATCTG+AGG | 0.616765 | 1.1:+29359330 | None:intergenic |
| GAAGATATTACTTCTTCCAG+AGG | 0.621633 | 1.1:-29359400 | None:intergenic |
| GTGGATAAGTACATGGGTGA+AGG | 0.624583 | 1.1:+29362161 | MS.gene94998:CDS |
| AAAACAAGGAAATTATGTGA+AGG | 0.627242 | 1.1:+29360287 | MS.gene94998:CDS |
| GCATTTGGAATCAATGCCTG+TGG | 0.632063 | 1.1:-29361650 | None:intergenic |
| TAGAACTTACAACGAATCCA+GGG | 0.632769 | 1.1:-29359556 | None:intergenic |
| CAAAGCATCCTAAACTCACA+CGG | 0.641175 | 1.1:-29359949 | None:intergenic |
| AAATAGCTCGTATTGGTGCA+GGG | 0.645847 | 1.1:+29360595 | MS.gene94998:CDS |
| TGAAGAATGAGTGCATCTGA+GGG | 0.655575 | 1.1:+29359331 | None:intergenic |
| CTCCCAAGGAAAACACCATG+TGG | 0.661953 | 1.1:-29361979 | None:intergenic |
| TGTTGACACAAGTAGTCCAA+AGG | 0.670225 | 1.1:-29360911 | None:intergenic |
| GTAAGAAGCCATAATTCCTG+AGG | 0.670534 | 1.1:-29361171 | None:intergenic |
| AATTACAGCAAGAAGAATTG+CGG | 0.675218 | 1.1:-29361031 | None:intergenic |
| TGTTGGGTGGATAAGTACAT+GGG | 0.695839 | 1.1:+29362155 | MS.gene94998:CDS |
| CATGTTAGTGATAGGCAGAG+GGG | 0.724209 | 1.1:+29359376 | MS.gene94998:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTACATTATTAATATA+AGG | - | chr1.1:29362113-29362132 | None:intergenic | 10.0% |
| !! | AATAATTAAGAAAAAATACA+AGG | - | chr1.1:29361128-29361147 | None:intergenic | 10.0% |
| !! | CAATGAAAAAAATATATTTA+TGG | + | chr1.1:29360477-29360496 | MS.gene94998:intron | 10.0% |
| !! | AACTAATTATTTCAACATAT+AGG | - | chr1.1:29361889-29361908 | None:intergenic | 15.0% |
| !! | ACTAATTATTTCAACATATA+GGG | - | chr1.1:29361888-29361907 | None:intergenic | 15.0% |
| !! | ATATAATGCCAAAATAATAA+CGG | - | chr1.1:29359480-29359499 | None:intergenic | 15.0% |
| !! | TTATATTTGATTAAACAGTA+TGG | + | chr1.1:29362346-29362365 | MS.gene94998:intron | 15.0% |
| !!! | TATTTTTTCTTAATTATTGC+AGG | + | chr1.1:29361130-29361149 | MS.gene94998:intron | 15.0% |
| !! | AAAACAATGAAAATGAGTTA+GGG | - | chr1.1:29362324-29362343 | None:intergenic | 20.0% |
| !! | AAATTGTACAAATATATGGT+TGG | + | chr1.1:29360396-29360415 | MS.gene94998:intron | 20.0% |
| !! | ATATTTGTACAATTTGTGAA+GGG | - | chr1.1:29360391-29360410 | None:intergenic | 20.0% |
| !! | CTAATTATTTCAACATATAG+GGG | - | chr1.1:29361887-29361906 | None:intergenic | 20.0% |
| !! | TAGATACATTCTAATTCATA+TGG | - | chr1.1:29361549-29361568 | None:intergenic | 20.0% |
| !! | TATAATGCCAAAATAATAAC+GGG | - | chr1.1:29359479-29359498 | None:intergenic | 20.0% |
| !! | TATATTTGTACAATTTGTGA+AGG | - | chr1.1:29360392-29360411 | None:intergenic | 20.0% |
| !! | TCACAAATTGTACAAATATA+TGG | + | chr1.1:29360392-29360411 | MS.gene94998:CDS | 20.0% |
| !! | TCTATAATCTCATACTATAA+AGG | + | chr1.1:29361565-29361584 | MS.gene94998:intron | 20.0% |
| !!! | AATATTTTTTACGAATGTGA+CGG | + | chr1.1:29361269-29361288 | MS.gene94998:intron | 20.0% |
| !!! | AATTTTGAGCTATTAAATCA+AGG | - | chr1.1:29362265-29362284 | None:intergenic | 20.0% |
| !!! | ATACTTTACATGCTTTAAAT+GGG | - | chr1.1:29361714-29361733 | None:intergenic | 20.0% |
| !!! | ATATTAACATGTTATTGACT+TGG | + | chr1.1:29360877-29360896 | MS.gene94998:intron | 20.0% |
| !!! | ATTTAAGTTGATGATTACAT+AGG | + | chr1.1:29360680-29360699 | MS.gene94998:intron | 20.0% |
| !!! | ATTTTGAGCTATTAAATCAA+GGG | - | chr1.1:29362264-29362283 | None:intergenic | 20.0% |
| !!! | TATACTTTACATGCTTTAAA+TGG | - | chr1.1:29361715-29361734 | None:intergenic | 20.0% |
| !!! | TCAAAAGTGACAATATTTTT+AGG | + | chr1.1:29361243-29361262 | MS.gene94998:intron | 20.0% |
| !!! | TCCATTTTTCATAATATTAC+CGG | - | chr1.1:29360080-29360099 | None:intergenic | 20.0% |
| !!! | TGTTTTATTGCTTTTATCAA+TGG | + | chr1.1:29360349-29360368 | MS.gene94998:CDS | 20.0% |
| !!! | TTAATATATTTTTCATCGCA+TGG | + | chr1.1:29361007-29361026 | MS.gene94998:CDS | 20.0% |
| !!! | TTATTTTTGGAAAACTGTTA+AGG | - | chr1.1:29361917-29361936 | None:intergenic | 20.0% |
| !!! | TTCATTTTCAGCTTTATTTT+TGG | - | chr1.1:29361930-29361949 | None:intergenic | 20.0% |
| !!! | TTTGAGAAATTAATTTGAGA+TGG | - | chr1.1:29361805-29361824 | None:intergenic | 20.0% |
| ! | AAAACAAGGAAATTATGTGA+AGG | + | chr1.1:29360287-29360306 | MS.gene94998:CDS | 25.0% |
| ! | AAACAATGAAAATGAGTTAG+GGG | - | chr1.1:29362323-29362342 | None:intergenic | 25.0% |
| ! | AAGCAATCATGTGATAAATT+AGG | - | chr1.1:29362068-29362087 | None:intergenic | 25.0% |
| ! | AATATCTGACTTCATTGTTA+AGG | - | chr1.1:29360239-29360258 | None:intergenic | 25.0% |
| ! | ACCGGTAATATTATGAAAAA+TGG | + | chr1.1:29360076-29360095 | MS.gene94998:intron | 25.0% |
| ! | ATAGTATACCTTTGAATGTA+AGG | - | chr1.1:29361067-29361086 | None:intergenic | 25.0% |
| ! | ATATTGTTCATGTTAGTGAT+AGG | + | chr1.1:29359368-29359387 | MS.gene94998:CDS | 25.0% |
| ! | CAAAACAATGAAAATGAGTT+AGG | - | chr1.1:29362325-29362344 | None:intergenic | 25.0% |
| ! | GATATCTGTAAAAAGAGAAA+AGG | - | chr1.1:29359879-29359898 | None:intergenic | 25.0% |
| ! | TAACAATTGCTTTCAATAAC+AGG | - | chr1.1:29360172-29360191 | None:intergenic | 25.0% |
| ! | TATTCCACCAAATGATAAAA+TGG | - | chr1.1:29360738-29360757 | None:intergenic | 25.0% |
| ! | TGGAAATTGTAAGAATTAAG+AGG | - | chr1.1:29360437-29360456 | None:intergenic | 25.0% |
| ! | TTTACAGATATCAAAGTTTG+TGG | + | chr1.1:29359887-29359906 | MS.gene94998:intron | 25.0% |
| ! | TTTATCACATGATTGCTTTA+AGG | + | chr1.1:29362070-29362089 | MS.gene94998:intron | 25.0% |
| !! | AAAATGCTAGTGTCTAAAAT+TGG | - | chr1.1:29359596-29359615 | None:intergenic | 25.0% |
| !! | AGATGATTGTTTTCATTCAT+TGG | + | chr1.1:29359919-29359938 | MS.gene94998:CDS | 25.0% |
| !! | ATGATTGTTTTCATTCATTG+GGG | + | chr1.1:29359921-29359940 | MS.gene94998:CDS | 25.0% |
| !! | ATTTCTATGAATGCTTTTGA+AGG | - | chr1.1:29360843-29360862 | None:intergenic | 25.0% |
| !! | CTTACATTGTTTTCTTATGT+TGG | + | chr1.1:29361189-29361208 | MS.gene94998:CDS | 25.0% |
| !! | GATGATTGTTTTCATTCATT+GGG | + | chr1.1:29359920-29359939 | MS.gene94998:CDS | 25.0% |
| !! | TGTACATTTTATACCTTAGA+TGG | + | chr1.1:29362124-29362143 | MS.gene94998:intron | 25.0% |
| !! | TTTCTATGAATGCTTTTGAA+GGG | - | chr1.1:29360842-29360861 | None:intergenic | 25.0% |
| !! | TTTTGAGCTATTAAATCAAG+GGG | - | chr1.1:29362263-29362282 | None:intergenic | 25.0% |
| !!! | GTGTCAACATTGTTTTATAT+TGG | + | chr1.1:29360925-29360944 | MS.gene94998:CDS | 25.0% |
| !!! | TTTATATTGGTGCTATATGT+GGG | + | chr1.1:29360938-29360957 | MS.gene94998:CDS | 25.0% |
| !!! | TTTTATATTGGTGCTATATG+TGG | + | chr1.1:29360937-29360956 | MS.gene94998:CDS | 25.0% |
| AACCAAGAAATTGGAAATAG+TGG | + | chr1.1:29361457-29361476 | MS.gene94998:CDS | 30.0% | |
| AACCACTATTTCCAATTTCT+TGG | - | chr1.1:29361462-29361481 | None:intergenic | 30.0% | |
| AAGAAATTGGAAATAGTGGT+TGG | + | chr1.1:29361461-29361480 | MS.gene94998:CDS | 30.0% | |
| AATAACTCAGCTAGAAAGTA+AGG | + | chr1.1:29362040-29362059 | MS.gene94998:intron | 30.0% | |
| AATAAGGAATCCCTATTAAG+AGG | - | chr1.1:29361599-29361618 | None:intergenic | 30.0% | |
| AATACAAGGAATGAAAAACC+AGG | - | chr1.1:29361114-29361133 | None:intergenic | 30.0% | |
| AATTACAGCAAGAAGAATTG+CGG | - | chr1.1:29361034-29361053 | None:intergenic | 30.0% | |
| AGCCAAAACAATTGCAAATA+TGG | - | chr1.1:29361623-29361642 | None:intergenic | 30.0% | |
| ATCAAAGTTTGTGGAAATGA+AGG | + | chr1.1:29359896-29359915 | MS.gene94998:CDS | 30.0% | |
| ATGTATACCAGTAACATGTT+TGG | - | chr1.1:29360048-29360067 | None:intergenic | 30.0% | |
| CAATTGCAAATATGGCAATA+AGG | - | chr1.1:29361615-29361634 | None:intergenic | 30.0% | |
| CATCAACTTAAATAGTTAGC+TGG | - | chr1.1:29360673-29360692 | None:intergenic | 30.0% | |
| CTATTACAGTTGTTTAACTG+TGG | + | chr1.1:29359621-29359640 | MS.gene94998:intron | 30.0% | |
| GAAAGGTTCTTACATAGAAA+TGG | + | chr1.1:29360546-29360565 | MS.gene94998:intron | 30.0% | |
| GAGACAAATAACCAAGAAAT+TGG | + | chr1.1:29361448-29361467 | MS.gene94998:CDS | 30.0% | |
| GATAATGATACAACTATGCA+AGG | + | chr1.1:29362408-29362427 | MS.gene94998:CDS | 30.0% | |
| GGAAGAAGTAATATCTTCAT+TGG | + | chr1.1:29359405-29359424 | MS.gene94998:CDS | 30.0% | |
| GTTATTTGTCTCACATCTTA+TGG | - | chr1.1:29361440-29361459 | None:intergenic | 30.0% | |
| TAATTATTGCAGGTTCATAG+AGG | + | chr1.1:29361140-29361159 | MS.gene94998:intron | 30.0% | |
| TACATTGACATGAAAAATCC+TGG | + | chr1.1:29361093-29361112 | MS.gene94998:intron | 30.0% | |
| TATGTGAAGGTAGAAATTCA+TGG | + | chr1.1:29360300-29360319 | MS.gene94998:CDS | 30.0% | |
| TGCAATGTTATTCATCAGTT+GGG | + | chr1.1:29362012-29362031 | MS.gene94998:CDS | 30.0% | |
| TTGCAATGTTATTCATCAGT+TGG | + | chr1.1:29362011-29362030 | MS.gene94998:CDS | 30.0% | |
| ! | AATTCTTCTTGCTGTAATTC+TGG | + | chr1.1:29361035-29361054 | MS.gene94998:CDS | 30.0% |
| ! | CTTTCATTCACTTCAAGTTA+TGG | + | chr1.1:29360637-29360656 | MS.gene94998:intron | 30.0% |
| ! | GTGTGATCCATTTTATCATT+TGG | + | chr1.1:29360728-29360747 | MS.gene94998:CDS | 30.0% |
| ! | TCATTTGGTGGAATAAGTAT+TGG | + | chr1.1:29360743-29360762 | MS.gene94998:CDS | 30.0% |
| ! | TCTTTTATCCTCAGGAATTA+TGG | + | chr1.1:29361163-29361182 | MS.gene94998:CDS | 30.0% |
| ! | TGATAATGAATCTTGTTGCA+TGG | + | chr1.1:29359503-29359522 | MS.gene94998:CDS | 30.0% |
| ! | TGATCCATTTTATCATTTGG+TGG | + | chr1.1:29360731-29360750 | MS.gene94998:CDS | 30.0% |
| ! | TGATTGTTTTCATTCATTGG+GGG | + | chr1.1:29359922-29359941 | MS.gene94998:CDS | 30.0% |
| ! | TGCCATATTTGCAATTGTTT+TGG | + | chr1.1:29361618-29361637 | MS.gene94998:CDS | 30.0% |
| !! | ATGAAGTATTGACACAAACA+CGG | + | chr1.1:29360019-29360038 | MS.gene94998:intron | 30.0% |
| !! | TCTAACTTCTATGTTTTTGC+AGG | + | chr1.1:29360570-29360589 | MS.gene94998:intron | 30.0% |
| !!! | AGTTTTAAAGATCACATCGA+AGG | - | chr1.1:29359725-29359744 | None:intergenic | 30.0% |
| !!! | GGTCAATTTTGTTTTGAGAA+AGG | + | chr1.1:29360529-29360548 | MS.gene94998:intron | 30.0% |
| AATGAAAATGAGTTAGGGGT+GGG | - | chr1.1:29362319-29362338 | None:intergenic | 35.0% | |
| ACTTTGTTCTGTCTCACAAT+TGG | - | chr1.1:29362384-29362403 | None:intergenic | 35.0% | |
| AGCTAGATTAGATGTGTGTT+TGG | - | chr1.1:29359802-29359821 | None:intergenic | 35.0% | |
| ATAATTTCTCGTGAAGCATG+TGG | - | chr1.1:29359990-29360009 | None:intergenic | 35.0% | |
| ATAGAACTTACAACGAATCC+AGG | - | chr1.1:29359560-29359579 | None:intergenic | 35.0% | |
| ATTAGGATCTTGGTTATAGC+TGG | + | chr1.1:29360508-29360527 | MS.gene94998:intron | 35.0% | |
| ATTTGTCTCACATCTTATGG+TGG | - | chr1.1:29361437-29361456 | None:intergenic | 35.0% | |
| ATTTGTGAAGGGATGAAGAA+TGG | - | chr1.1:29360380-29360399 | None:intergenic | 35.0% | |
| GAAATTCATGGCATTCTAGA+TGG | + | chr1.1:29360312-29360331 | MS.gene94998:CDS | 35.0% | |
| GAACACTTTGTCCATAATCA+CGG | - | chr1.1:29359534-29359553 | None:intergenic | 35.0% | |
| GAAGATATTACTTCTTCCAG+AGG | - | chr1.1:29359403-29359422 | None:intergenic | 35.0% | |
| GATGATATTCCTTACAGCTA+TGG | + | chr1.1:29361950-29361969 | MS.gene94998:CDS | 35.0% | |
| GGTCATATCCTTACATTCAA+AGG | + | chr1.1:29361056-29361075 | MS.gene94998:CDS | 35.0% | |
| TAGAACTTACAACGAATCCA+GGG | - | chr1.1:29359559-29359578 | None:intergenic | 35.0% | |
| TATTTATGGCACAGTGCATT+AGG | + | chr1.1:29360491-29360510 | MS.gene94998:intron | 35.0% | |
| TGGAAAAATCCATAGCTGTA+AGG | - | chr1.1:29361962-29361981 | None:intergenic | 35.0% | |
| TGGTATACATACATAGACAC+CGG | + | chr1.1:29360058-29360077 | MS.gene94998:intron | 35.0% | |
| TGTGAGACAGAACAAAGTTA+TGG | + | chr1.1:29362386-29362405 | MS.gene94998:CDS | 35.0% | |
| TTCTCAGCACAGTAAAAACA+AGG | + | chr1.1:29360273-29360292 | MS.gene94998:CDS | 35.0% | |
| ! | AGAATGCTACGATTAGTCAT+TGG | + | chr1.1:29359842-29359861 | MS.gene94998:intron | 35.0% |
| ! | AGGTCTTTTGTCCTCTTAAT+AGG | + | chr1.1:29361585-29361604 | MS.gene94998:intron | 35.0% |
| ! | GGTCTTTTGTCCTCTTAATA+GGG | + | chr1.1:29361586-29361605 | MS.gene94998:intron | 35.0% |
| ! | TAGATGTGTGTTTGGTTTCT+CGG | - | chr1.1:29359794-29359813 | None:intergenic | 35.0% |
| !! | CATGTTATTGACTTGGTAAC+AGG | + | chr1.1:29360884-29360903 | MS.gene94998:intron | 35.0% |
| !! | CATTGATTCCAAATGCTTTC+AGG | + | chr1.1:29361657-29361676 | MS.gene94998:CDS | 35.0% |
| !! | CTTTTGAAGGGATAGCAAAA+TGG | - | chr1.1:29360830-29360849 | None:intergenic | 35.0% |
| !! | GATTGTGTATGAACTTGTTG+TGG | - | chr1.1:29361524-29361543 | None:intergenic | 35.0% |
| !! | GTGATTTACCTGAAAGCATT+TGG | - | chr1.1:29361668-29361687 | None:intergenic | 35.0% |
| !! | TTAGATGGAGCATTGATGTT+GGG | + | chr1.1:29362139-29362158 | MS.gene94998:intron | 35.0% |
| AGGCATCACAACAGAAATTG+CGG | - | chr1.1:29359705-29359724 | None:intergenic | 40.0% | |
| ATGTTGGGTGGATAAGTACA+TGG | + | chr1.1:29362154-29362173 | MS.gene94998:CDS | 40.0% | |
| ATTCATGGCATTCTAGATGG+TGG | + | chr1.1:29360315-29360334 | MS.gene94998:CDS | 40.0% | |
| CAACATCAATGCTCCATCTA+AGG | - | chr1.1:29362140-29362159 | None:intergenic | 40.0% | |
| CAATGAAAATGAGTTAGGGG+TGG | - | chr1.1:29362320-29362339 | None:intergenic | 40.0% | |
| CAGACGAAGAAACGAAAAAG+AGG | + | chr1.1:29360770-29360789 | MS.gene94998:CDS | 40.0% | |
| CAGCAGAATTCAGACAATTG+CGG | + | chr1.1:29359679-29359698 | MS.gene94998:intron | 40.0% | |
| GTAAGAAGCCATAATTCCTG+AGG | - | chr1.1:29361174-29361193 | None:intergenic | 40.0% | |
| TATGTTGGTGTGCAATCAGA+AGG | + | chr1.1:29361204-29361223 | MS.gene94998:CDS | 40.0% | |
| TCATGTTAGTGATAGGCAGA+GGG | + | chr1.1:29359375-29359394 | MS.gene94998:CDS | 40.0% | |
| TGTTGACACAAGTAGTCCAA+AGG | - | chr1.1:29360914-29360933 | None:intergenic | 40.0% | |
| TGTTGGGTGGATAAGTACAT+GGG | + | chr1.1:29362155-29362174 | MS.gene94998:CDS | 40.0% | |
| TTCATGGCATTCTAGATGGT+GGG | + | chr1.1:29360316-29360335 | MS.gene94998:CDS | 40.0% | |
| TTCATGTTAGTGATAGGCAG+AGG | + | chr1.1:29359374-29359393 | MS.gene94998:CDS | 40.0% | |
| TTTAACTGTGGTTGCGATTG+CGG | + | chr1.1:29359633-29359652 | MS.gene94998:intron | 40.0% | |
| ! | AAATAGCTCGTATTGGTGCA+GGG | + | chr1.1:29360595-29360614 | MS.gene94998:CDS | 40.0% |
| ! | ATCTGACTTTTCTCGCTACA+TGG | - | chr1.1:29360457-29360476 | None:intergenic | 40.0% |
| ! | CAAAGCATCCTAAACTCACA+CGG | - | chr1.1:29359952-29359971 | None:intergenic | 40.0% |
| ! | CAGCTATGGATTTTTCCACA+TGG | + | chr1.1:29361964-29361983 | MS.gene94998:CDS | 40.0% |
| ! | CATAGAGGTCTTTTATCCTC+AGG | + | chr1.1:29361155-29361174 | MS.gene94998:CDS | 40.0% |
| ! | CTTCACGCCCGTTATTATTT+TGG | + | chr1.1:29359469-29359488 | MS.gene94998:CDS | 40.0% |
| ! | GCATGGTTTTTCCGTGATTA+TGG | + | chr1.1:29359520-29359539 | MS.gene94998:CDS | 40.0% |
| ! | TTCCACATGGTGTTTTCCTT+GGG | + | chr1.1:29361977-29361996 | MS.gene94998:CDS | 40.0% |
| ! | TTTCCACATGGTGTTTTCCT+TGG | + | chr1.1:29361976-29361995 | MS.gene94998:CDS | 40.0% |
| !! | CTCTTTTTCGTTTCTTCGTC+TGG | - | chr1.1:29360772-29360791 | None:intergenic | 40.0% |
| !! | CTTAGATGGAGCATTGATGT+TGG | + | chr1.1:29362138-29362157 | MS.gene94998:intron | 40.0% |
| ACGGACACCAAACATGTTAC+TGG | + | chr1.1:29360038-29360057 | MS.gene94998:intron | 45.0% | |
| CATGTTAGTGATAGGCAGAG+GGG | + | chr1.1:29359376-29359395 | MS.gene94998:CDS | 45.0% | |
| GAAGCATGTGGCATAATCGA+AGG | - | chr1.1:29359978-29359997 | None:intergenic | 45.0% | |
| GCAGGTGAAATAGCTCGTAT+TGG | + | chr1.1:29360588-29360607 | MS.gene94998:intron | 45.0% | |
| GGAATCAATGCCTGTGGAAA+AGG | - | chr1.1:29361647-29361666 | None:intergenic | 45.0% | |
| GTGGATAAGTACATGGGTGA+AGG | + | chr1.1:29362161-29362180 | MS.gene94998:CDS | 45.0% | |
| TGCAAAGTACATTGCTCCCA+AGG | - | chr1.1:29361996-29362015 | None:intergenic | 45.0% | |
| ! | ATGGACAAAGTGTTCTACCC+TGG | + | chr1.1:29359539-29359558 | MS.gene94998:CDS | 45.0% |
| ! | GAAATAGCTCGTATTGGTGC+AGG | + | chr1.1:29360594-29360613 | MS.gene94998:CDS | 45.0% |
| ! | GCATTTGGAATCAATGCCTG+TGG | - | chr1.1:29361653-29361672 | None:intergenic | 45.0% |
| CTCCCAAGGAAAACACCATG+TGG | - | chr1.1:29361982-29362001 | None:intergenic | 50.0% | |
| GGCACAGTGCATTAGGATCT+TGG | + | chr1.1:29360498-29360517 | MS.gene94998:intron | 50.0% | |
| GGGTGAAGGTTCTCAATGAG+TGG | + | chr1.1:29362175-29362194 | MS.gene94998:CDS | 50.0% | |
| GTCTCACATCTTATGGTGGC+AGG | - | chr1.1:29361433-29361452 | None:intergenic | 50.0% | |
| ! | CTTGGTAACAGGTGCTCCTT+TGG | + | chr1.1:29360895-29360914 | MS.gene94998:intron | 50.0% |
| !! | GATGGAGCATTGATGTTGGG+TGG | + | chr1.1:29362142-29362161 | MS.gene94998:intron | 50.0% |
| !!! | GTTTTGGCTGCCTTTTCCAC+AGG | + | chr1.1:29361634-29361653 | MS.gene94998:CDS | 50.0% |
| GGGGTTCTCCGTGTGAGTTT+AGG | + | chr1.1:29359941-29359960 | MS.gene94998:CDS | 55.0% | |
| TGATAGGCAGAGGGGTCCTC+TGG | + | chr1.1:29359384-29359403 | MS.gene94998:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 29359337 | 29362455 | 29359337 | ID=MS.gene94998 |
| chr1.1 | mRNA | 29359337 | 29362455 | 29359337 | ID=MS.gene94998.t1;Parent=MS.gene94998 |
| chr1.1 | exon | 29359337 | 29359568 | 29359337 | ID=MS.gene94998.t1.exon1;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29359337 | 29359568 | 29359337 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| chr1.1 | exon | 29359894 | 29359970 | 29359894 | ID=MS.gene94998.t1.exon2;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29359894 | 29359970 | 29359894 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| chr1.1 | exon | 29360254 | 29360413 | 29360254 | ID=MS.gene94998.t1.exon3;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29360254 | 29360413 | 29360254 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| chr1.1 | exon | 29360592 | 29360616 | 29360592 | ID=MS.gene94998.t1.exon4;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29360592 | 29360616 | 29360592 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| chr1.1 | exon | 29360702 | 29360791 | 29360702 | ID=MS.gene94998.t1.exon5;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29360702 | 29360791 | 29360702 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| chr1.1 | exon | 29360906 | 29361077 | 29360906 | ID=MS.gene94998.t1.exon6;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29360906 | 29361077 | 29360906 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| chr1.1 | exon | 29361152 | 29361225 | 29361152 | ID=MS.gene94998.t1.exon7;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29361152 | 29361225 | 29361152 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| chr1.1 | exon | 29361426 | 29361495 | 29361426 | ID=MS.gene94998.t1.exon8;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29361426 | 29361495 | 29361426 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| chr1.1 | exon | 29361607 | 29361678 | 29361607 | ID=MS.gene94998.t1.exon9;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29361607 | 29361678 | 29361607 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| chr1.1 | exon | 29361923 | 29362056 | 29361923 | ID=MS.gene94998.t1.exon10;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29361923 | 29362056 | 29361923 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| chr1.1 | exon | 29362143 | 29362216 | 29362143 | ID=MS.gene94998.t1.exon11;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29362143 | 29362216 | 29362143 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| chr1.1 | exon | 29362364 | 29362455 | 29362364 | ID=MS.gene94998.t1.exon12;Parent=MS.gene94998.t1 |
| chr1.1 | CDS | 29362364 | 29362455 | 29362364 | ID=cds.MS.gene94998.t1;Parent=MS.gene94998.t1 |
| Gene Sequence |
| Protein sequence |
