Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95029.t1 | KEH30250.1 | 91.9 | 284 | 8 | 3 | 37 | 313 | 24 | 299 | 9.10E-101 | 377.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95029.t1 | Q9C690 | 35.4 | 288 | 135 | 11 | 38 | 313 | 22 | 270 | 2.3e-07 | 58.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95029.t1 | A0A072ULI3 | 91.9 | 284 | 8 | 3 | 37 | 313 | 24 | 299 | 6.6e-101 | 377.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95029 | MS.gene041017 | PPI |
| MS.gene84970 | MS.gene95029 | PPI |
| MS.gene95029 | MS.gene95775 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95029.t1 | MTR_4g065870 | 90.554 | 307 | 13 | 4 | 15 | 313 | 1 | 299 | 0.0 | 509 |
| MS.gene95029.t1 | MTR_4g065870 | 90.554 | 307 | 13 | 4 | 15 | 313 | 1 | 299 | 0.0 | 508 |
| MS.gene95029.t1 | MTR_4g065870 | 90.554 | 307 | 13 | 4 | 15 | 313 | 1 | 299 | 2.22e-180 | 506 |
| MS.gene95029.t1 | MTR_2g098310 | 43.210 | 324 | 113 | 12 | 15 | 312 | 1 | 279 | 8.17e-66 | 214 |
| MS.gene95029.t1 | MTR_2g098310 | 43.210 | 324 | 113 | 12 | 15 | 312 | 1 | 279 | 1.18e-65 | 212 |
| MS.gene95029.t1 | MTR_2g098310 | 43.210 | 324 | 113 | 12 | 15 | 312 | 1 | 279 | 1.48e-65 | 213 |
| MS.gene95029.t1 | MTR_2g098310 | 43.210 | 324 | 113 | 12 | 15 | 312 | 1 | 279 | 1.58e-65 | 213 |
| MS.gene95029.t1 | MTR_2g098310 | 43.210 | 324 | 113 | 12 | 15 | 312 | 1 | 279 | 2.08e-65 | 214 |
| MS.gene95029.t1 | MTR_1g052470 | 33.588 | 131 | 76 | 4 | 195 | 317 | 127 | 254 | 5.01e-11 | 63.9 |
| MS.gene95029.t1 | MTR_1g052470 | 33.588 | 131 | 76 | 4 | 195 | 317 | 127 | 254 | 8.16e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95029.t1 | AT1G51140 | 32.143 | 224 | 112 | 8 | 15 | 233 | 1 | 189 | 8.10e-18 | 84.3 |
Find 61 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAATAATTTGAGTAATTA+TGG | 0.186951 | 4.4:-40257890 | MS.gene95029:CDS |
| ACCCTTTCTGCGATGCTTCT+TGG | 0.204939 | 4.4:+40256261 | None:intergenic |
| CATCAACAACAAATGAATTC+AGG | 0.258063 | 4.4:-40258277 | MS.gene95029:CDS |
| CCCTTTCTGCGATGCTTCTT+GGG | 0.281243 | 4.4:+40256262 | None:intergenic |
| TCAACTACTGAATCAGTTAT+AGG | 0.313043 | 4.4:+40258052 | None:intergenic |
| CGGGTTTCAGCAAAACCTTC+AGG | 0.325691 | 4.4:+40256843 | None:intergenic |
| TCAAACACTTATTCATGCTT+TGG | 0.334130 | 4.4:-40256146 | MS.gene95029:CDS |
| ATGATATCTGATAATATTAC+TGG | 0.350123 | 4.4:-40256765 | MS.gene95029:CDS |
| CCTAACGGTGAGGCATAGTT+TGG | 0.353263 | 4.4:+40256909 | None:intergenic |
| CTTTCTGTTTCAGGACTTGA+AGG | 0.354030 | 4.4:+40258172 | None:intergenic |
| TTTGCTGCTATGAGAGGAAT+AGG | 0.354357 | 4.4:-40257005 | MS.gene95029:CDS |
| TATGAGAGGAATAGGAACTA+TGG | 0.359228 | 4.4:-40256997 | MS.gene95029:CDS |
| GGTGGTAGTGGTGGTGGTGG+TGG | 0.363507 | 4.4:-40258112 | MS.gene95029:CDS |
| TCAAACATTAACATTGATAC+TGG | 0.367647 | 4.4:-40257749 | MS.gene95029:intron |
| TCAACCTCTTCCTTAACTAT+AGG | 0.381573 | 4.4:+40257986 | None:intergenic |
| TTTATCCCGGGTTTCCCCTT+AGG | 0.384096 | 4.4:-40256810 | MS.gene95029:CDS |
| GGAAGTGGTGGTAGTGGTGG+TGG | 0.399180 | 4.4:-40258118 | MS.gene95029:CDS |
| TCACCGTTAGGAGCTGAAAT+CGG | 0.415027 | 4.4:-40256897 | MS.gene95029:CDS |
| CCCAAGAAGCATCGCAGAAA+GGG | 0.421337 | 4.4:-40256262 | MS.gene95029:intron |
| AAGGTGGTCTTCCTGAATTA+TGG | 0.439700 | 4.4:+40257840 | None:intergenic |
| CGACCGGTCTTCATTTGATT+CGG | 0.440686 | 4.4:+40257815 | None:intergenic |
| GCAACAGCTTCCTATAGTTA+AGG | 0.446191 | 4.4:-40257996 | MS.gene95029:CDS |
| AGTGGTGGTAGTGGTGGTGG+TGG | 0.447971 | 4.4:-40258115 | MS.gene95029:CDS |
| CACCGTTAGGAGCTGAAATC+GGG | 0.453811 | 4.4:-40256896 | MS.gene95029:CDS |
| ATCCTCCCATGTAGTACCTA+AGG | 0.461462 | 4.4:+40256794 | None:intergenic |
| TGATGATCTAGAAACATAGT+TGG | 0.464492 | 4.4:+40258307 | None:intergenic |
| CCAAACTATGCCTCACCGTT+AGG | 0.468050 | 4.4:-40256909 | MS.gene95029:CDS |
| ATGAATAGTCTTAGTGGAAG+TGG | 0.476450 | 4.4:-40258133 | MS.gene95029:CDS |
| ATCAACAACAAATGAATTCA+GGG | 0.477414 | 4.4:-40258276 | MS.gene95029:CDS |
| GTCTTCATTTGATTCGGTAA+AGG | 0.477771 | 4.4:+40257821 | None:intergenic |
| GTTTCCCCTTAGGTACTACA+TGG | 0.505709 | 4.4:-40256800 | MS.gene95029:CDS |
| AGTGGAAGTGGTGGTAGTGG+TGG | 0.511352 | 4.4:-40258121 | MS.gene95029:CDS |
| CTTAGTGGAAGTGGTGGTAG+TGG | 0.518560 | 4.4:-40258124 | MS.gene95029:CDS |
| TGCGATGCTTCTTGGGTGAG+TGG | 0.520586 | 4.4:+40256269 | None:intergenic |
| AGGTTTATGAATAGTCTTAG+TGG | 0.525192 | 4.4:-40258139 | MS.gene95029:CDS |
| ACCCAAGAAGCATCGCAGAA+AGG | 0.530358 | 4.4:-40256263 | MS.gene95029:CDS |
| TTCATTTGATTCGGTAAAGG+TGG | 0.540846 | 4.4:+40257824 | None:intergenic |
| GCTTCCTATAGTTAAGGAAG+AGG | 0.542479 | 4.4:-40257990 | MS.gene95029:CDS |
| ATGAGAGGAATAGGAACTAT+GGG | 0.549779 | 4.4:-40256996 | MS.gene95029:CDS |
| ATGTTTGAAAACAATCCAGC+AGG | 0.553542 | 4.4:+40257764 | None:intergenic |
| CTCCCGATTTCAGCTCCTAA+CGG | 0.555564 | 4.4:+40256894 | None:intergenic |
| TCCTCCCATGTAGTACCTAA+GGG | 0.558794 | 4.4:+40256795 | None:intergenic |
| CGGGATAAAATCGTTACCCC+GGG | 0.559844 | 4.4:+40256824 | None:intergenic |
| CAAAACAATCTTGAACCTGA+AGG | 0.566426 | 4.4:-40256858 | MS.gene95029:CDS |
| CGGTCTAGTCTTATTAGACA+TGG | 0.567978 | 4.4:-40257794 | MS.gene95029:CDS |
| AGACATGGTAGTTCACCTGC+TGG | 0.569719 | 4.4:-40257779 | MS.gene95029:CDS |
| GTAGTACCTAAGGGGAAACC+CGG | 0.587146 | 4.4:+40256804 | None:intergenic |
| AAATGAATTCAGGGTTAACA+CGG | 0.591208 | 4.4:-40258267 | MS.gene95029:CDS |
| TGGCACAGCCTCGTTTAGCA+CGG | 0.591219 | 4.4:+40256289 | None:intergenic |
| TGCAAAATCCGTGCTAAACG+AGG | 0.592385 | 4.4:-40256297 | MS.gene95029:CDS |
| CCGGGATAAAATCGTTACCC+CGG | 0.596209 | 4.4:+40256823 | None:intergenic |
| AATGAATAACAATGAATCTG+TGG | 0.596436 | 4.4:-40257939 | MS.gene95029:CDS |
| CCCCTTAGGTACTACATGGG+AGG | 0.597480 | 4.4:-40256796 | MS.gene95029:CDS |
| TCTAATAAGACTAGACCGAC+CGG | 0.616887 | 4.4:+40257799 | None:intergenic |
| AATAGTCTTAGTGGAAGTGG+TGG | 0.627049 | 4.4:-40258130 | MS.gene95029:CDS |
| TTACCGAATCAAATGAAGAC+CGG | 0.652711 | 4.4:-40257818 | MS.gene95029:CDS |
| CGAATCAAATGAAGACCGGT+CGG | 0.664050 | 4.4:-40257814 | MS.gene95029:CDS |
| CCTCCCATGTAGTACCTAAG+GGG | 0.665348 | 4.4:+40256796 | None:intergenic |
| TTTCCCCTTAGGTACTACAT+GGG | 0.669210 | 4.4:-40256799 | MS.gene95029:CDS |
| TAGTACCTAAGGGGAAACCC+GGG | 0.682720 | 4.4:+40256805 | None:intergenic |
| GATTTCAGCTCCTAACGGTG+AGG | 0.706801 | 4.4:+40256899 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAATAATTTGAGTAATTA+TGG | - | chr4.4:40256624-40256643 | MS.gene95029:intron | 15.0% |
| !! | ATATTTGAAAAATATGAACT+TGG | + | chr4.4:40256285-40256304 | None:intergenic | 15.0% |
| !! | AAGTTAATTAGAAATCGAAT+AGG | - | chr4.4:40257407-40257426 | MS.gene95029:intron | 20.0% |
| !! | ATGATATCTGATAATATTAC+TGG | - | chr4.4:40257749-40257768 | MS.gene95029:intron | 20.0% |
| !! | TCATAATAAGAAAAAGAGTA+TGG | + | chr4.4:40256798-40256817 | None:intergenic | 20.0% |
| !!! | ATTTACATTTTGTGCATATT+TGG | + | chr4.4:40257088-40257107 | None:intergenic | 20.0% |
| !!! | TCATTTTCTTGATCATAAAT+AGG | - | chr4.4:40257450-40257469 | MS.gene95029:intron | 20.0% |
| !!! | TGTAGTTTTTATCAAAATCA+CGG | - | chr4.4:40257027-40257046 | MS.gene95029:intron | 20.0% |
| ! | AATGAATAACAATGAATCTG+TGG | - | chr4.4:40256575-40256594 | MS.gene95029:intron | 25.0% |
| ! | ACCATGTAAAACAAAGAAAA+AGG | + | chr4.4:40256894-40256913 | None:intergenic | 25.0% |
| ! | ATAACAAAGTAAAGCTACTT+AGG | + | chr4.4:40256919-40256938 | None:intergenic | 25.0% |
| ! | ATCAACAACAAATGAATTCA+GGG | - | chr4.4:40256238-40256257 | MS.gene95029:intron | 25.0% |
| ! | TCAAACATTAACATTGATAC+TGG | - | chr4.4:40256765-40256784 | MS.gene95029:CDS | 25.0% |
| ! | TGAATTGTACTATCAGAATT+TGG | - | chr4.4:40257847-40257866 | MS.gene95029:CDS | 25.0% |
| ! | TTATAAATTCTGCTACACTT+CGG | + | chr4.4:40257986-40258005 | None:intergenic | 25.0% |
| !!! | ATGGAAATAGGTATTGAAAA+CGG | + | chr4.4:40256861-40256880 | None:intergenic | 25.0% |
| !!! | GTGACTTTTTTAAATAACTC+CGG | - | chr4.4:40256960-40256979 | MS.gene95029:CDS | 25.0% |
| !!! | TATCCATCATAGTTTTAGTA+AGG | - | chr4.4:40257128-40257147 | MS.gene95029:intron | 25.0% |
| !!! | TCCTTTTTCTTTGTTTTACA+TGG | - | chr4.4:40256890-40256909 | MS.gene95029:CDS | 25.0% |
| AAATGAATTCAGGGTTAACA+CGG | - | chr4.4:40256247-40256266 | MS.gene95029:intron | 30.0% | |
| AGAGGACTTGATTTAAATCT+AGG | - | chr4.4:40257308-40257327 | MS.gene95029:intron | 30.0% | |
| CATCAACAACAAATGAATTC+AGG | - | chr4.4:40256237-40256256 | MS.gene95029:intron | 30.0% | |
| GAAGAAGAAGAAGAAAAGAA+TGG | - | chr4.4:40256164-40256183 | MS.gene95029:CDS | 30.0% | |
| GAATTATGGTAAAAACTCTG+AGG | + | chr4.4:40256663-40256682 | None:intergenic | 30.0% | |
| GTTCCTTACTAAAACTATGA+TGG | + | chr4.4:40257134-40257153 | None:intergenic | 30.0% | |
| TCAAACACTTATTCATGCTT+TGG | - | chr4.4:40258368-40258387 | MS.gene95029:CDS | 30.0% | |
| TCAACTACTGAATCAGTTAT+AGG | + | chr4.4:40256465-40256484 | None:intergenic | 30.0% | |
| TGATGATCTAGAAACATAGT+TGG | + | chr4.4:40256210-40256229 | None:intergenic | 30.0% | |
| TTTAAATCCAGCTGAAACTA+AGG | - | chr4.4:40257820-40257839 | MS.gene95029:CDS | 30.0% | |
| ! | AAACAGAAAGAGTTTTTGCA+AGG | - | chr4.4:40256355-40256374 | MS.gene95029:intron | 30.0% |
| ! | AGCAAATTTTTCTTCTTCTG+CGG | - | chr4.4:40257565-40257584 | MS.gene95029:intron | 30.0% |
| ! | AGGTTTATGAATAGTCTTAG+TGG | - | chr4.4:40256375-40256394 | MS.gene95029:intron | 30.0% |
| ! | AGTTTTTATCAAAATCACGG+TGG | - | chr4.4:40257030-40257049 | MS.gene95029:intron | 30.0% |
| ! | CAGAGTTTTTACCATAATTC+AGG | - | chr4.4:40256663-40256682 | MS.gene95029:intron | 30.0% |
| ! | CATCATCTCTGTATCTTTTT+AGG | + | chr4.4:40257775-40257794 | None:intergenic | 30.0% |
| ! | TTGACAACACTGATTACATT+TGG | - | chr4.4:40258033-40258052 | MS.gene95029:CDS | 30.0% |
| ! | TTTTAAATAACTCCGGAATC+CGG | - | chr4.4:40256967-40256986 | MS.gene95029:CDS | 30.0% |
| AGAAAAAGGAAATCACGCAA+TGG | + | chr4.4:40256880-40256899 | None:intergenic | 35.0% | |
| ATCATCGTGTCAATCTAATC+CGG | + | chr4.4:40256989-40257008 | None:intergenic | 35.0% | |
| ATGAGAGGAATAGGAACTAT+GGG | - | chr4.4:40257518-40257537 | MS.gene95029:intron | 35.0% | |
| ATGTTTGAAAACAATCCAGC+AGG | + | chr4.4:40256753-40256772 | None:intergenic | 35.0% | |
| ATTGATCAGAATGAAACAGG+AGG | - | chr4.4:40258091-40258110 | MS.gene95029:CDS | 35.0% | |
| CAAAACAATCTTGAACCTGA+AGG | - | chr4.4:40257656-40257675 | MS.gene95029:intron | 35.0% | |
| GAACTGCAAAAACTTCTCAA+TGG | + | chr4.4:40258182-40258201 | None:intergenic | 35.0% | |
| GATGAGTATGCCAAATACTA+CGG | - | chr4.4:40258144-40258163 | MS.gene95029:CDS | 35.0% | |
| GCAAAAACTCTTTCTGTTTC+AGG | + | chr4.4:40256354-40256373 | None:intergenic | 35.0% | |
| GCTACTTGACCTAAAAAAAC+GGG | - | chr4.4:40257360-40257379 | MS.gene95029:intron | 35.0% | |
| GCTGGAAAATGAGAACATAA+TGG | - | chr4.4:40257223-40257242 | MS.gene95029:intron | 35.0% | |
| GGCTACTTGACCTAAAAAAA+CGG | - | chr4.4:40257359-40257378 | MS.gene95029:intron | 35.0% | |
| TATAATGATGCTAGCTAGCT+TGG | - | chr4.4:40257477-40257496 | MS.gene95029:intron | 35.0% | |
| TATGAGAGGAATAGGAACTA+TGG | - | chr4.4:40257517-40257536 | MS.gene95029:intron | 35.0% | |
| TCAACCTCTTCCTTAACTAT+AGG | + | chr4.4:40256531-40256550 | None:intergenic | 35.0% | |
| TTACCGAATCAAATGAAGAC+CGG | - | chr4.4:40256696-40256715 | MS.gene95029:intron | 35.0% | |
| ! | ATGAATAGTCTTAGTGGAAG+TGG | - | chr4.4:40256381-40256400 | MS.gene95029:intron | 35.0% |
| ! | ATTTTTCTTCTTCTGCGGTA+CGG | - | chr4.4:40257570-40257589 | MS.gene95029:intron | 35.0% |
| ! | CATTTTCCAGCTAATTGGAT+CGG | + | chr4.4:40257214-40257233 | None:intergenic | 35.0% |
| ! | GTTCTCATTTTCCAGCTAAT+TGG | + | chr4.4:40257219-40257238 | None:intergenic | 35.0% |
| ! | TCATGAAAGTACAACTCAGT+TGG | - | chr4.4:40257262-40257281 | MS.gene95029:intron | 35.0% |
| ! | TGATTTTGCTGAATTCGTTG+TGG | - | chr4.4:40257060-40257079 | MS.gene95029:intron | 35.0% |
| ! | TGCATTGATCAGAATGAAAC+AGG | - | chr4.4:40258088-40258107 | MS.gene95029:CDS | 35.0% |
| !! | GTCTTCATTTGATTCGGTAA+AGG | + | chr4.4:40256696-40256715 | None:intergenic | 35.0% |
| !! | TCAGGTTCAAGATTGTTTTG+TGG | + | chr4.4:40257656-40257675 | None:intergenic | 35.0% |
| !! | TTCATTTGATTCGGTAAAGG+TGG | + | chr4.4:40256693-40256712 | None:intergenic | 35.0% |
| !!! | TCACGAAATCCCGTTTTTTT+AGG | + | chr4.4:40257372-40257391 | None:intergenic | 35.0% |
| AAGGTGGTCTTCCTGAATTA+TGG | + | chr4.4:40256677-40256696 | None:intergenic | 40.0% | |
| ATACTCATCTGATGAGCCAA+AGG | + | chr4.4:40258133-40258152 | None:intergenic | 40.0% | |
| CTTTCTGTTTCAGGACTTGA+AGG | + | chr4.4:40256345-40256364 | None:intergenic | 40.0% | |
| GATGTAAAACCATTTCCTCC+AGG | - | chr4.4:40257797-40257816 | MS.gene95029:CDS | 40.0% | |
| GCAACAGCTTCCTATAGTTA+AGG | - | chr4.4:40256518-40256537 | MS.gene95029:intron | 40.0% | |
| GCTTCCTATAGTTAAGGAAG+AGG | - | chr4.4:40256524-40256543 | MS.gene95029:intron | 40.0% | |
| GGAAATCACGCAATGGAAAT+AGG | + | chr4.4:40256873-40256892 | None:intergenic | 40.0% | |
| GGATTTAAACCTGGAGGAAA+TGG | + | chr4.4:40257809-40257828 | None:intergenic | 40.0% | |
| GTTTCAGCTGGATTTAAACC+TGG | + | chr4.4:40257818-40257837 | None:intergenic | 40.0% | |
| TCAACTACCTTAGTTTCAGC+TGG | + | chr4.4:40257830-40257849 | None:intergenic | 40.0% | |
| TCTAATAAGACTAGACCGAC+CGG | + | chr4.4:40256718-40256737 | None:intergenic | 40.0% | |
| TGTCAATCTAATCCGGATTC+CGG | + | chr4.4:40256982-40257001 | None:intergenic | 40.0% | |
| TTTCCCCTTAGGTACTACAT+GGG | - | chr4.4:40257715-40257734 | MS.gene95029:intron | 40.0% | |
| TTTGCTGCTATGAGAGGAAT+AGG | - | chr4.4:40257509-40257528 | MS.gene95029:intron | 40.0% | |
| ! | AATAGTCTTAGTGGAAGTGG+TGG | - | chr4.4:40256384-40256403 | MS.gene95029:intron | 40.0% |
| ! | AGTAGAGCATTTGACAACAC+TGG | + | chr4.4:40257882-40257901 | None:intergenic | 40.0% |
| ! | GAAAGTACAACTCAGTTGGT+AGG | - | chr4.4:40257266-40257285 | MS.gene95029:intron | 40.0% |
| ! | TTTGTGCAGTGTTGTTAGTG+CGG | - | chr4.4:40257950-40257969 | MS.gene95029:CDS | 40.0% |
| !! | CGGTCTAGTCTTATTAGACA+TGG | - | chr4.4:40256720-40256739 | MS.gene95029:intron | 40.0% |
| !! | TTTTAGGTCAAGTAGCCTAG+TGG | + | chr4.4:40257356-40257375 | None:intergenic | 40.0% |
| AATTGGATCGGCAGTCAGTT+CGG | + | chr4.4:40257202-40257221 | None:intergenic | 45.0% | |
| ATCCTCCCATGTAGTACCTA+AGG | + | chr4.4:40257723-40257742 | None:intergenic | 45.0% | |
| CGAATCAAATGAAGACCGGT+CGG | - | chr4.4:40256700-40256719 | MS.gene95029:intron | 45.0% | |
| CGACCGGTCTTCATTTGATT+CGG | + | chr4.4:40256702-40256721 | None:intergenic | 45.0% | |
| CTTCTCAATGGCTGCCAATT+CGG | + | chr4.4:40258170-40258189 | None:intergenic | 45.0% | |
| GCAGGGACATTGATATACAG+AGG | - | chr4.4:40257290-40257309 | MS.gene95029:intron | 45.0% | |
| GTTTCCCCTTAGGTACTACA+TGG | - | chr4.4:40257714-40257733 | MS.gene95029:intron | 45.0% | |
| TCACCGTTAGGAGCTGAAAT+CGG | - | chr4.4:40257617-40257636 | MS.gene95029:intron | 45.0% | |
| TCAGCTGGATTTAAACCTGG+AGG | + | chr4.4:40257815-40257834 | None:intergenic | 45.0% | |
| TCCTCCCATGTAGTACCTAA+GGG | + | chr4.4:40257722-40257741 | None:intergenic | 45.0% | |
| TGCAAAATCCGTGCTAAACG+AGG | - | chr4.4:40258217-40258236 | MS.gene95029:CDS | 45.0% | |
| ! | ATGATGCTAGCTAGCTTGGT+TGG | - | chr4.4:40257481-40257500 | MS.gene95029:intron | 45.0% |
| ! | CGTTTAGCACGGATTTTGCA+CGG | + | chr4.4:40258217-40258236 | None:intergenic | 45.0% |
| ! | CTGAAGGTTTTGCTGAAACC+CGG | - | chr4.4:40257672-40257691 | MS.gene95029:intron | 45.0% |
| ! | TGAAGGTTTTGCTGAAACCC+GGG | - | chr4.4:40257673-40257692 | MS.gene95029:intron | 45.0% |
| !! | AATTTATAATAGAATTAAAA+TGG | + | chr4.4:40258281-40258300 | None:intergenic | 5.0% |
| ACCCTTTCTGCGATGCTTCT+TGG | + | chr4.4:40258256-40258275 | None:intergenic | 50.0% | |
| AGACATGGTAGTTCACCTGC+TGG | - | chr4.4:40256735-40256754 | MS.gene95029:intron | 50.0% | |
| CACCGTTAGGAGCTGAAATC+GGG | - | chr4.4:40257618-40257637 | MS.gene95029:intron | 50.0% | |
| CCAAACTATGCCTCACCGTT+AGG | - | chr4.4:40257605-40257624 | MS.gene95029:intron | 50.0% | |
| CCAAAGGAGCAGAAGTAGTC+TGG | + | chr4.4:40258117-40258136 | None:intergenic | 50.0% | |
| CCAGACTACTTCTGCTCCTT+TGG | - | chr4.4:40258114-40258133 | MS.gene95029:CDS | 50.0% | |
| CCCTTTCTGCGATGCTTCTT+GGG | + | chr4.4:40258255-40258274 | None:intergenic | 50.0% | |
| CCGGGATAAAATCGTTACCC+CGG | + | chr4.4:40257694-40257713 | None:intergenic | 50.0% | |
| CCTAACGGTGAGGCATAGTT+TGG | + | chr4.4:40257608-40257627 | None:intergenic | 50.0% | |
| CCTCCCATGTAGTACCTAAG+GGG | + | chr4.4:40257721-40257740 | None:intergenic | 50.0% | |
| CGGGATAAAATCGTTACCCC+GGG | + | chr4.4:40257693-40257712 | None:intergenic | 50.0% | |
| CGGGTTTCAGCAAAACCTTC+AGG | + | chr4.4:40257674-40257693 | None:intergenic | 50.0% | |
| CTCCCGATTTCAGCTCCTAA+CGG | + | chr4.4:40257623-40257642 | None:intergenic | 50.0% | |
| CTTAGTGGAAGTGGTGGTAG+TGG | - | chr4.4:40256390-40256409 | MS.gene95029:intron | 50.0% | |
| GATTTCAGCTCCTAACGGTG+AGG | + | chr4.4:40257618-40257637 | None:intergenic | 50.0% | |
| GCCAAATACTACGGCCGAAT+TGG | - | chr4.4:40258153-40258172 | MS.gene95029:CDS | 50.0% | |
| GCCAATTCGGCCGTAGTATT+TGG | + | chr4.4:40258157-40258176 | None:intergenic | 50.0% | |
| GTAGTACCTAAGGGGAAACC+CGG | + | chr4.4:40257713-40257732 | None:intergenic | 50.0% | |
| TAGTACCTAAGGGGAAACCC+GGG | + | chr4.4:40257712-40257731 | None:intergenic | 50.0% | |
| TGACTGCCGATCCAATTAGC+TGG | - | chr4.4:40257205-40257224 | MS.gene95029:intron | 50.0% | |
| TTTATCCCGGGTTTCCCCTT+AGG | - | chr4.4:40257704-40257723 | MS.gene95029:intron | 50.0% | |
| ! | CCGGGGTAACGATTTTATCC+CGG | - | chr4.4:40257691-40257710 | MS.gene95029:intron | 50.0% |
| ! | CGGGGTAACGATTTTATCCC+GGG | - | chr4.4:40257692-40257711 | MS.gene95029:intron | 50.0% |
| ! | GAAGGTTTTGCTGAAACCCG+GGG | - | chr4.4:40257674-40257693 | MS.gene95029:intron | 50.0% |
| ! | GCAGGTTTTGCTGCTATGAG+AGG | - | chr4.4:40257503-40257522 | MS.gene95029:intron | 50.0% |
| !! | ACAACTCAGTTGGTAGGTGC+AGG | - | chr4.4:40257272-40257291 | MS.gene95029:intron | 50.0% |
| !! | ACCCAAGAAGCATCGCAGAA+AGG | - | chr4.4:40258251-40258270 | MS.gene95029:CDS | 50.0% |
| !! | CAACTCAGTTGGTAGGTGCA+GGG | - | chr4.4:40257273-40257292 | MS.gene95029:intron | 50.0% |
| !! | CCCAAGAAGCATCGCAGAAA+GGG | - | chr4.4:40258252-40258271 | MS.gene95029:CDS | 50.0% |
| AGGTCAAGTAGCCTAGTGGC+AGG | + | chr4.4:40257352-40257371 | None:intergenic | 55.0% | |
| CCCCTTAGGTACTACATGGG+AGG | - | chr4.4:40257718-40257737 | MS.gene95029:intron | 55.0% | |
| TGCGATGCTTCTTGGGTGAG+TGG | + | chr4.4:40258248-40258267 | None:intergenic | 55.0% | |
| TGGCACAGCCTCGTTTAGCA+CGG | + | chr4.4:40258228-40258247 | None:intergenic | 55.0% | |
| ! | TGCTAGCTAGCTTGGTTGGC+AGG | - | chr4.4:40257485-40257504 | MS.gene95029:intron | 55.0% |
| !! | AGTGGAAGTGGTGGTAGTGG+TGG | - | chr4.4:40256393-40256412 | MS.gene95029:intron | 55.0% |
| AAGTAGCCTAGTGGCAGGCG+TGG | + | chr4.4:40257347-40257366 | None:intergenic | 60.0% | |
| ACTTCTCCACGCCTGCCACT+AGG | - | chr4.4:40257338-40257357 | MS.gene95029:intron | 60.0% | |
| TAGTGGCAGGCGTGGAGAAG+TGG | + | chr4.4:40257339-40257358 | None:intergenic | 60.0% | |
| !! | AGTGGTGGTAGTGGTGGTGG+TGG | - | chr4.4:40256399-40256418 | MS.gene95029:intron | 60.0% |
| !! | GGAAGTGGTGGTAGTGGTGG+TGG | - | chr4.4:40256396-40256415 | MS.gene95029:intron | 60.0% |
| !! | GGTAGTGGTGGTGGTGGTGG+TGG | - | chr4.4:40256405-40256424 | MS.gene95029:intron | 65.0% |
| !! | GGTGGTAGTGGTGGTGGTGG+TGG | - | chr4.4:40256402-40256421 | MS.gene95029:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 40256141 | 40258395 | 40256141 | ID=MS.gene95029 |
| chr4.4 | mRNA | 40256141 | 40258395 | 40256141 | ID=MS.gene95029.t1;Parent=MS.gene95029 |
| chr4.4 | exon | 40257750 | 40258395 | 40257750 | ID=MS.gene95029.t1.exon1;Parent=MS.gene95029.t1 |
| chr4.4 | CDS | 40257750 | 40258395 | 40257750 | ID=cds.MS.gene95029.t1;Parent=MS.gene95029.t1 |
| chr4.4 | exon | 40256737 | 40257029 | 40256737 | ID=MS.gene95029.t1.exon2;Parent=MS.gene95029.t1 |
| chr4.4 | CDS | 40256737 | 40257029 | 40256737 | ID=cds.MS.gene95029.t1;Parent=MS.gene95029.t1 |
| chr4.4 | exon | 40256263 | 40256357 | 40256263 | ID=MS.gene95029.t1.exon3;Parent=MS.gene95029.t1 |
| chr4.4 | CDS | 40256263 | 40256357 | 40256263 | ID=cds.MS.gene95029.t1;Parent=MS.gene95029.t1 |
| chr4.4 | exon | 40256141 | 40256183 | 40256141 | ID=MS.gene95029.t1.exon4;Parent=MS.gene95029.t1 |
| chr4.4 | CDS | 40256141 | 40256183 | 40256141 | ID=cds.MS.gene95029.t1;Parent=MS.gene95029.t1 |
| Gene Sequence |
| Protein sequence |
