Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95099.t1 | XP_013458657.1 | 97.1 | 279 | 7 | 1 | 1 | 279 | 1 | 278 | 1.00E-152 | 549.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95099.t1 | Q94B74 | 56.2 | 283 | 113 | 4 | 1 | 277 | 1 | 278 | 1.4e-84 | 314.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95099.t1 | A0A072US93 | 97.1 | 279 | 7 | 1 | 1 | 279 | 1 | 278 | 7.5e-153 | 549.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95099 | MS.gene05654 | PPI |
| MS.gene95099 | MS.gene04190 | PPI |
| MS.gene04304 | MS.gene95099 | PPI |
| MS.gene95099 | MS.gene94957 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95099.t1 | MTR_4g133945 | 97.133 | 279 | 7 | 1 | 1 | 279 | 1 | 278 | 0.0 | 565 |
| MS.gene95099.t1 | MTR_2g026715 | 71.685 | 279 | 75 | 4 | 1 | 278 | 45 | 320 | 1.29e-148 | 419 |
| MS.gene95099.t1 | MTR_3g460790 | 58.801 | 267 | 107 | 2 | 11 | 277 | 23 | 286 | 2.67e-112 | 325 |
| MS.gene95099.t1 | MTR_8g091995 | 57.422 | 256 | 105 | 2 | 14 | 269 | 19 | 270 | 4.16e-104 | 305 |
| MS.gene95099.t1 | MTR_3g082770 | 54.086 | 257 | 113 | 3 | 13 | 269 | 80 | 331 | 4.28e-102 | 301 |
| MS.gene95099.t1 | MTR_3g460790 | 63.285 | 207 | 74 | 1 | 11 | 217 | 23 | 227 | 7.84e-93 | 275 |
| MS.gene95099.t1 | MTR_2g026715 | 72.316 | 177 | 46 | 3 | 1 | 176 | 58 | 232 | 6.94e-91 | 269 |
| MS.gene95099.t1 | MTR_4g100480 | 46.816 | 267 | 140 | 2 | 13 | 279 | 91 | 355 | 1.56e-84 | 257 |
| MS.gene95099.t1 | MTR_0446s0020 | 95.522 | 67 | 3 | 0 | 213 | 279 | 2 | 68 | 6.11e-43 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95099.t1 | AT5G47650 | 56.184 | 283 | 113 | 4 | 1 | 277 | 1 | 278 | 1.96e-111 | 323 |
| MS.gene95099.t1 | AT5G47650 | 56.184 | 283 | 113 | 4 | 1 | 277 | 1 | 278 | 1.96e-111 | 323 |
| MS.gene95099.t1 | AT5G47650 | 56.184 | 283 | 113 | 4 | 1 | 277 | 1 | 278 | 1.96e-111 | 323 |
| MS.gene95099.t1 | AT5G47650 | 57.196 | 271 | 111 | 3 | 7 | 277 | 60 | 325 | 1.76e-110 | 322 |
| MS.gene95099.t1 | AT5G47650 | 57.196 | 271 | 111 | 3 | 7 | 277 | 59 | 324 | 2.21e-110 | 322 |
| MS.gene95099.t1 | AT4G25434 | 54.340 | 265 | 114 | 4 | 7 | 269 | 13 | 272 | 6.30e-98 | 289 |
| MS.gene95099.t1 | AT4G25434 | 53.208 | 265 | 112 | 5 | 7 | 269 | 13 | 267 | 5.49e-93 | 276 |
| MS.gene95099.t1 | AT4G25434 | 49.315 | 292 | 114 | 5 | 7 | 269 | 13 | 299 | 4.24e-92 | 275 |
| MS.gene95099.t1 | AT4G12720 | 51.119 | 268 | 125 | 4 | 10 | 275 | 7 | 270 | 2.39e-91 | 272 |
| MS.gene95099.t1 | AT4G12720 | 51.119 | 268 | 125 | 4 | 10 | 275 | 7 | 270 | 2.39e-91 | 272 |
| MS.gene95099.t1 | AT4G12720 | 51.119 | 268 | 125 | 4 | 10 | 275 | 7 | 270 | 2.39e-91 | 272 |
| MS.gene95099.t1 | AT4G25434 | 48.288 | 292 | 112 | 6 | 7 | 269 | 13 | 294 | 5.20e-87 | 262 |
| MS.gene95099.t1 | AT4G25434 | 60.697 | 201 | 77 | 2 | 12 | 212 | 18 | 216 | 1.51e-85 | 255 |
| MS.gene95099.t1 | AT5G47240 | 48.529 | 272 | 130 | 5 | 1 | 269 | 86 | 350 | 1.47e-84 | 258 |
| MS.gene95099.t1 | AT4G12720 | 44.481 | 308 | 125 | 5 | 10 | 275 | 7 | 310 | 2.65e-83 | 253 |
| MS.gene95099.t1 | AT2G04450 | 49.624 | 266 | 127 | 5 | 7 | 269 | 4 | 265 | 2.86e-83 | 251 |
| MS.gene95099.t1 | AT4G25434 | 59.204 | 201 | 75 | 3 | 12 | 212 | 18 | 211 | 1.80e-80 | 242 |
| MS.gene95099.t1 | AT2G04430 | 49.187 | 246 | 122 | 2 | 7 | 249 | 4 | 249 | 1.98e-80 | 244 |
| MS.gene95099.t1 | AT2G04430 | 49.187 | 246 | 122 | 2 | 7 | 249 | 23 | 268 | 4.27e-80 | 244 |
| MS.gene95099.t1 | AT4G25434 | 53.509 | 228 | 77 | 3 | 12 | 212 | 18 | 243 | 7.14e-80 | 241 |
| MS.gene95099.t1 | AT5G47240 | 43.854 | 301 | 130 | 6 | 1 | 269 | 86 | 379 | 4.25e-78 | 242 |
| MS.gene95099.t1 | AT4G25434 | 56.784 | 199 | 81 | 2 | 73 | 269 | 32 | 227 | 1.06e-77 | 236 |
| MS.gene95099.t1 | AT4G25434 | 56.784 | 199 | 81 | 2 | 73 | 269 | 32 | 227 | 1.06e-77 | 236 |
| MS.gene95099.t1 | AT4G12720 | 55.122 | 205 | 88 | 3 | 10 | 212 | 7 | 209 | 1.23e-75 | 230 |
| MS.gene95099.t1 | AT4G25434 | 55.276 | 199 | 79 | 3 | 73 | 269 | 32 | 222 | 1.49e-72 | 223 |
| MS.gene95099.t1 | AT4G25434 | 57.396 | 169 | 70 | 2 | 7 | 175 | 13 | 179 | 1.30e-64 | 202 |
| MS.gene95099.t1 | AT4G25434 | 48.571 | 210 | 76 | 3 | 89 | 269 | 1 | 207 | 1.16e-62 | 197 |
| MS.gene95099.t1 | AT4G25434 | 49.490 | 196 | 70 | 3 | 7 | 175 | 13 | 206 | 6.65e-59 | 188 |
| MS.gene95099.t1 | AT4G12720 | 49.735 | 189 | 91 | 3 | 89 | 275 | 1 | 187 | 1.54e-58 | 186 |
| MS.gene95099.t1 | AT2G04440 | 44.199 | 181 | 93 | 2 | 7 | 180 | 4 | 183 | 3.71e-45 | 152 |
Find 55 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTACAAGCATCAAATATTT+TGG | 0.159229 | 8.2:-759674 | None:intergenic |
| TTCAAATAAAGATGGCTATT+TGG | 0.203005 | 8.2:-761779 | None:intergenic |
| AAGATTGATGGACATTATTC+TGG | 0.227648 | 8.2:+761716 | MS.gene95099:CDS |
| ATTAATGGATCACCCTATTA+TGG | 0.228313 | 8.2:+758844 | MS.gene95099:CDS |
| ATATGCAGCTCAGCCATTTA+TGG | 0.279024 | 8.2:+761649 | MS.gene95099:CDS |
| TTGTGGAAGTATTAGCATTC+AGG | 0.296467 | 8.2:+760934 | MS.gene95099:CDS |
| CGGTGTTATCGTAGAATTAA+TGG | 0.299809 | 8.2:+758829 | MS.gene95099:CDS |
| TTACACCTTCAATTTCTAAC+TGG | 0.317897 | 8.2:+758891 | MS.gene95099:CDS |
| AAGGTAGTAGAATCCATAAT+AGG | 0.322907 | 8.2:-758857 | None:intergenic |
| GATAAAATTACCTATTCATC+TGG | 0.356295 | 8.2:+759476 | MS.gene95099:CDS |
| ACAATGAATTACTCCTCTTA+AGG | 0.361763 | 8.2:-761811 | None:intergenic |
| ACTCGGTGTGTGGCATTTGC+AGG | 0.374095 | 8.2:-759725 | None:intergenic |
| GCCATTTATGGAAAAGTATG+AGG | 0.393678 | 8.2:+761661 | MS.gene95099:CDS |
| CAGCTTCTATCTCTACCTCC+TGG | 0.398995 | 8.2:-761357 | None:intergenic |
| TCCTACCGGAGTTGCTGATC+AGG | 0.409277 | 8.2:+760642 | MS.gene95099:CDS |
| AATAAAGATGGCTATTTGGC+TGG | 0.419860 | 8.2:-761775 | None:intergenic |
| ACAAGGTTGGCCAGATGAAT+AGG | 0.422162 | 8.2:-759486 | None:intergenic |
| TGTAGGGCAAGAAGGGTGTT+TGG | 0.427765 | 8.2:+759454 | MS.gene95099:intron |
| AATATTTGATGCTTGTACAT+TGG | 0.428434 | 8.2:+759678 | MS.gene95099:CDS |
| AGCCATCTTTATTTGAATGC+TGG | 0.428650 | 8.2:+761785 | MS.gene95099:CDS |
| GCCACACACCGAGTGGGTAT+TGG | 0.432566 | 8.2:+759734 | MS.gene95099:CDS |
| AGAGAGGTCAAAGAAGAAAC+AGG | 0.434993 | 8.2:+760772 | MS.gene95099:CDS |
| TGTTTCCAGTTAGAAATTGA+AGG | 0.439398 | 8.2:-758896 | None:intergenic |
| AGGTAGTAGAATCCATAATA+GGG | 0.451351 | 8.2:-758856 | None:intergenic |
| CATTGTCTTGTAGGGCAAGA+AGG | 0.454453 | 8.2:+759446 | MS.gene95099:intron |
| TTGAGCTTCTTCTTCTGTTG+AGG | 0.459694 | 8.2:-758771 | None:intergenic |
| TCAGATAGACTCGGAATTTG+TGG | 0.463019 | 8.2:+760917 | MS.gene95099:intron |
| ATATACTTGGCAAAGATTGA+TGG | 0.464974 | 8.2:+761704 | MS.gene95099:CDS |
| AATTTCTAACTGGAAACAAC+AGG | 0.477830 | 8.2:+758901 | MS.gene95099:CDS |
| TGAATGCTGGAGGCCTTAAG+AGG | 0.480821 | 8.2:+761798 | MS.gene95099:CDS |
| AATTAAAGTTTCCACAAGGT+TGG | 0.483065 | 8.2:-759499 | None:intergenic |
| AACTCCGGTAGGAAATTTCC+AGG | 0.487178 | 8.2:-760632 | None:intergenic |
| AGTGGGTATTGGAGCGTTTG+TGG | 0.488578 | 8.2:+759745 | MS.gene95099:CDS |
| AGAAATTGAAGGTGTAAGAA+TGG | 0.490971 | 8.2:-758885 | None:intergenic |
| TGAGCTGCATATTCATCAAA+TGG | 0.494421 | 8.2:-761638 | None:intergenic |
| GTGTGTGGCATTTGCAGGAA+TGG | 0.522297 | 8.2:-759720 | None:intergenic |
| CTCCAGCATTCAAATAAAGA+TGG | 0.531291 | 8.2:-761787 | None:intergenic |
| AGGTGTAAGAATGGATAAGA+AGG | 0.540844 | 8.2:-758876 | None:intergenic |
| TGCAAATGCCACACACCGAG+TGG | 0.544339 | 8.2:+759727 | MS.gene95099:CDS |
| GGTAGAGATAGAAGCTGCAA+AGG | 0.549918 | 8.2:+761363 | MS.gene95099:CDS |
| ATTGTCTTGTAGGGCAAGAA+GGG | 0.550569 | 8.2:+759447 | MS.gene95099:intron |
| CATCTTTATTTGAATGCTGG+AGG | 0.553074 | 8.2:+761788 | MS.gene95099:CDS |
| TATTCATCTGGCCAACCTTG+TGG | 0.553285 | 8.2:+759488 | MS.gene95099:CDS |
| TCCAATACCCACTCGGTGTG+TGG | 0.564012 | 8.2:-759735 | None:intergenic |
| TTGTGCAGCAGCAGTAAGAG+AGG | 0.565131 | 8.2:+760756 | MS.gene95099:CDS |
| GTACATTAATGACATATACT+TGG | 0.579892 | 8.2:+761691 | MS.gene95099:CDS |
| CATTAATTAAAGTTTCCACA+AGG | 0.606195 | 8.2:-759503 | None:intergenic |
| GGATCCTGGAAATTTCCTAC+CGG | 0.606581 | 8.2:+760628 | MS.gene95099:CDS |
| ATTTACCTGATCAGCAACTC+CGG | 0.611010 | 8.2:-760647 | None:intergenic |
| CAAACGCTCCAATACCCACT+CGG | 0.649930 | 8.2:-759742 | None:intergenic |
| ACCTGATCAGCAACTCCGGT+AGG | 0.652284 | 8.2:-760643 | None:intergenic |
| GCAAATGCCACACACCGAGT+GGG | 0.669457 | 8.2:+759728 | MS.gene95099:CDS |
| ACTTCTCAAAGAATGTCATG+TGG | 0.686811 | 8.2:-761282 | None:intergenic |
| TGTGGTGAATGATAAACGAG+AGG | 0.692588 | 8.2:+759763 | MS.gene95099:CDS |
| TCAACTGATGATGAATATAG+CGG | 0.707705 | 8.2:+758809 | MS.gene95099:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATTTACTAACTCTAA+TGG | + | chr8.2:758939-758958 | MS.gene95099:intron | 15.0% |
| !!! | AACTTTCTTATTTTGAAAAT+AGG | - | chr8.2:760096-760115 | None:intergenic | 15.0% |
| !! | AATTTCTATTCCCATAATAA+AGG | - | chr8.2:760264-760283 | None:intergenic | 20.0% |
| !! | AGAATATATGTAAGAAATTG+TGG | - | chr8.2:761461-761480 | None:intergenic | 20.0% |
| !! | AGTATCCTTTAAATTGATTA+AGG | - | chr8.2:759028-759047 | None:intergenic | 20.0% |
| !! | ATAAACCATGATATTGTTAT+TGG | - | chr8.2:761099-761118 | None:intergenic | 20.0% |
| !! | ATCTGAAAATTGAAAAAACT+TGG | - | chr8.2:760903-760922 | None:intergenic | 20.0% |
| !! | ATTCATTATATATAGCAACA+GGG | + | chr8.2:761583-761602 | MS.gene95099:intron | 20.0% |
| !! | ATTTCTATTCCCATAATAAA+GGG | - | chr8.2:760263-760282 | None:intergenic | 20.0% |
| !! | CTTATCCTTAATCAATTTAA+AGG | + | chr8.2:759020-759039 | MS.gene95099:intron | 20.0% |
| !! | GTAGTAATTGAACTAATTAA+GGG | + | chr8.2:759149-759168 | MS.gene95099:intron | 20.0% |
| !! | TATTCATTATATATAGCAAC+AGG | + | chr8.2:761582-761601 | MS.gene95099:intron | 20.0% |
| !! | TCAAAATAAGAAAGTTAACA+AGG | + | chr8.2:760100-760119 | MS.gene95099:intron | 20.0% |
| !! | TTGAAATTATGCACTAAATA+AGG | + | chr8.2:761400-761419 | MS.gene95099:intron | 20.0% |
| !!! | AATGTTATTTCTATGTATCA+AGG | - | chr8.2:760363-760382 | None:intergenic | 20.0% |
| !!! | CAGTAAATTTTAGTATTATG+AGG | + | chr8.2:761552-761571 | MS.gene95099:intron | 20.0% |
| !!! | TAAGAAATTGTGGTATTTTA+GGG | - | chr8.2:761451-761470 | None:intergenic | 20.0% |
| !!! | TAATATTTCATTTTGTGTGT+TGG | + | chr8.2:760976-760995 | MS.gene95099:intron | 20.0% |
| ! | AATATTTGATGCTTGTACAT+TGG | + | chr8.2:759678-759697 | MS.gene95099:CDS | 25.0% |
| ! | AATGATATTTATGAGTGAGT+GGG | - | chr8.2:759177-759196 | None:intergenic | 25.0% |
| ! | ACAATATCATGGTTTATAAG+CGG | + | chr8.2:761102-761121 | MS.gene95099:intron | 25.0% |
| ! | ACATTCGTTTATTCTTTCAT+CGG | + | chr8.2:761245-761264 | MS.gene95099:intron | 25.0% |
| ! | ACCCTAAATATATAACCATA+TGG | - | chr8.2:759865-759884 | None:intergenic | 25.0% |
| ! | ATTCAGAAAGATTAGGAATA+CGG | + | chr8.2:759350-759369 | MS.gene95099:intron | 25.0% |
| ! | CAACAACTACACAATAAAAT+CGG | - | chr8.2:761161-761180 | None:intergenic | 25.0% |
| ! | CATTAATTAAAGTTTCCACA+AGG | - | chr8.2:759506-759525 | None:intergenic | 25.0% |
| ! | CCCATATGGTTATATATTTA+GGG | + | chr8.2:759861-759880 | MS.gene95099:intron | 25.0% |
| ! | CCCTAAATATATAACCATAT+GGG | - | chr8.2:759864-759883 | None:intergenic | 25.0% |
| ! | GATAAAATTACCTATTCATC+TGG | + | chr8.2:759476-759495 | MS.gene95099:CDS | 25.0% |
| ! | GGTAGTAATTGAACTAATTA+AGG | + | chr8.2:759148-759167 | MS.gene95099:intron | 25.0% |
| ! | GTACATTAATGACATATACT+TGG | + | chr8.2:761691-761710 | MS.gene95099:CDS | 25.0% |
| ! | TAATGATATTTATGAGTGAG+TGG | - | chr8.2:759178-759197 | None:intergenic | 25.0% |
| ! | TCCCATATGGTTATATATTT+AGG | + | chr8.2:759860-759879 | MS.gene95099:intron | 25.0% |
| ! | TGAAAAAACTTGGAACAATT+AGG | - | chr8.2:760893-760912 | None:intergenic | 25.0% |
| ! | TGAGTAGATTATATAAACCA+AGG | - | chr8.2:760714-760733 | None:intergenic | 25.0% |
| ! | TGTAGTTGTTGAAAAAATGT+AGG | + | chr8.2:761170-761189 | MS.gene95099:intron | 25.0% |
| ! | TTCAAATAAAGATGGCTATT+TGG | - | chr8.2:761782-761801 | None:intergenic | 25.0% |
| ! | TTCTTAGATGCTAAATAATC+AGG | - | chr8.2:759306-759325 | None:intergenic | 25.0% |
| !! | GTAAGAAATTGTGGTATTTT+AGG | - | chr8.2:761452-761471 | None:intergenic | 25.0% |
| !! | TGTACAAGCATCAAATATTT+TGG | - | chr8.2:759677-759696 | None:intergenic | 25.0% |
| !! | TTTCAATTTTCAGATAGACT+CGG | + | chr8.2:760908-760927 | MS.gene95099:intron | 25.0% |
| !! | TTTTGATGTCAAAAGAAAGA+GGG | - | chr8.2:761336-761355 | None:intergenic | 25.0% |
| !!! | AAGTTTGATTTTGTAGATAC+AGG | - | chr8.2:761749-761768 | None:intergenic | 25.0% |
| !!! | AGTTTGATTTTGTAGATACA+GGG | - | chr8.2:761748-761767 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTAGATTGAAGGT+GGG | - | chr8.2:759207-759226 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTCAAAAGAAAG+AGG | - | chr8.2:761337-761356 | None:intergenic | 25.0% |
| !!! | CAAAATTTTCCTTAGTTTTC+TGG | - | chr8.2:759919-759938 | None:intergenic | 25.0% |
| !!! | GAATTATGCAGAGTTATTTT+CGG | - | chr8.2:760513-760532 | None:intergenic | 25.0% |
| !!! | GTAGATAAGTTTTAGATTGA+AGG | - | chr8.2:759211-759230 | None:intergenic | 25.0% |
| AACTCTGCATAATTCTGAAT+TGG | + | chr8.2:760518-760537 | MS.gene95099:intron | 30.0% | |
| AAGGTAGTAGAATCCATAAT+AGG | - | chr8.2:758860-758879 | None:intergenic | 30.0% | |
| AATAAACGAATGTGAATTCC+TGG | - | chr8.2:761238-761257 | None:intergenic | 30.0% | |
| AATTAAAGTTTCCACAAGGT+TGG | - | chr8.2:759502-759521 | None:intergenic | 30.0% | |
| AATTTCTAACTGGAAACAAC+AGG | + | chr8.2:758901-758920 | MS.gene95099:CDS | 30.0% | |
| ACAATGAATTACTCCTCTTA+AGG | - | chr8.2:761814-761833 | None:intergenic | 30.0% | |
| AGAAAGTAAAGCTAGAAACT+AGG | + | chr8.2:760188-760207 | MS.gene95099:intron | 30.0% | |
| AGGTAGTAGAATCCATAATA+GGG | - | chr8.2:758859-758878 | None:intergenic | 30.0% | |
| ATATACTTGGCAAAGATTGA+TGG | + | chr8.2:761704-761723 | MS.gene95099:CDS | 30.0% | |
| ATGCTAAATAATCAGGAAAC+TGG | - | chr8.2:759299-759318 | None:intergenic | 30.0% | |
| CTCATTTCCTAGTTATCAAA+TGG | + | chr8.2:760557-760576 | MS.gene95099:intron | 30.0% | |
| TCAATTACTACCCATGAAAA+AGG | - | chr8.2:759140-759159 | None:intergenic | 30.0% | |
| TCGAGTTATTCAGAAAGATT+AGG | + | chr8.2:759343-759362 | MS.gene95099:intron | 30.0% | |
| TGAAAAAGGATCAGATCTAT+TGG | - | chr8.2:759126-759145 | None:intergenic | 30.0% | |
| TGAATCAACATTGTCTTGTA+GGG | + | chr8.2:759438-759457 | MS.gene95099:intron | 30.0% | |
| TGTTTCCAGTTAGAAATTGA+AGG | - | chr8.2:758899-758918 | None:intergenic | 30.0% | |
| TTACACCTTCAATTTCTAAC+TGG | + | chr8.2:758891-758910 | MS.gene95099:CDS | 30.0% | |
| TTGAATCAACATTGTCTTGT+AGG | + | chr8.2:759437-759456 | MS.gene95099:intron | 30.0% | |
| TTGTGTATGTGTATCTTGTT+TGG | + | chr8.2:758973-758992 | MS.gene95099:intron | 30.0% | |
| ! | AAGATTGATGGACATTATTC+TGG | + | chr8.2:761716-761735 | MS.gene95099:CDS | 30.0% |
| ! | ACCTCATACTTTTCCATAAA+TGG | - | chr8.2:761665-761684 | None:intergenic | 30.0% |
| ! | AGAAAAAACTGGACATTTTC+AGG | + | chr8.2:760600-760619 | MS.gene95099:CDS | 30.0% |
| ! | AGAAATTGAAGGTGTAAGAA+TGG | - | chr8.2:758888-758907 | None:intergenic | 30.0% |
| ! | ATTAATGGATCACCCTATTA+TGG | + | chr8.2:758844-758863 | MS.gene95099:CDS | 30.0% |
| ! | GAAAAAACTGGACATTTTCA+GGG | + | chr8.2:760601-760620 | MS.gene95099:CDS | 30.0% |
| ! | TCAACTGATGATGAATATAG+CGG | + | chr8.2:758809-758828 | MS.gene95099:CDS | 30.0% |
| ! | TTCATTTTGTGTGTTGGAAA+AGG | + | chr8.2:760982-761001 | MS.gene95099:intron | 30.0% |
| ! | TTCTTTTCATTACTTCGCAT+TGG | + | chr8.2:761477-761496 | MS.gene95099:intron | 30.0% |
| ! | TTCTTTTGACATCAAAATCC+AGG | + | chr8.2:761339-761358 | MS.gene95099:CDS | 30.0% |
| !! | AGCTTACAATTTTGATAACC+AGG | + | chr8.2:761217-761236 | MS.gene95099:intron | 30.0% |
| !! | ATAGATCTGATCCTTTTTCA+TGG | + | chr8.2:759126-759145 | MS.gene95099:intron | 30.0% |
| !! | GTTTGATTTTGTAGATACAG+GGG | - | chr8.2:761747-761766 | None:intergenic | 30.0% |
| !! | TAGATCTGATCCTTTTTCAT+GGG | + | chr8.2:759127-759146 | MS.gene95099:intron | 30.0% |
| !!! | ATTGGAAAGTCTCTTTTTTC+TGG | + | chr8.2:761495-761514 | MS.gene95099:intron | 30.0% |
| !!! | GATAAGTTTTAGATTGAAGG+TGG | - | chr8.2:759208-759227 | None:intergenic | 30.0% |
| !!! | TCAAATATTTTGGTTCTGCA+TGG | - | chr8.2:759667-759686 | None:intergenic | 30.0% |
| AAACTAGGAATCTTTACCTC+AGG | + | chr8.2:760203-760222 | MS.gene95099:intron | 35.0% | |
| AAATGACAAGTTAGTACGCA+AGG | - | chr8.2:759589-759608 | None:intergenic | 35.0% | |
| AATAAAGATGGCTATTTGGC+TGG | - | chr8.2:761778-761797 | None:intergenic | 35.0% | |
| AATTAGGCTTAGAATCACGT+TGG | - | chr8.2:760877-760896 | None:intergenic | 35.0% | |
| ACAAAACTTGGGTCTCAATA+AGG | + | chr8.2:759374-759393 | MS.gene95099:intron | 35.0% | |
| ACTTCTCAAAGAATGTCATG+TGG | - | chr8.2:761285-761304 | None:intergenic | 35.0% | |
| AGGAATACGGAACAAAACTT+GGG | + | chr8.2:759363-759382 | MS.gene95099:intron | 35.0% | |
| AGGAGTAAGTAATCTCTTTG+CGG | + | chr8.2:760792-760811 | MS.gene95099:intron | 35.0% | |
| AGGTGTAAGAATGGATAAGA+AGG | - | chr8.2:758879-758898 | None:intergenic | 35.0% | |
| ATCCAGATAACTTTCTACGT+AGG | + | chr8.2:760153-760172 | MS.gene95099:intron | 35.0% | |
| ATGTCTAGTGCACATTCAAT+AGG | - | chr8.2:760820-760839 | None:intergenic | 35.0% | |
| CAAAACTTGGGTCTCAATAA+GGG | + | chr8.2:759375-759394 | MS.gene95099:intron | 35.0% | |
| CCTAGTTATCAAATGGTGTT+AGG | + | chr8.2:760564-760583 | MS.gene95099:intron | 35.0% | |
| CTAGTGCTTCAAGAAAAAAC+TGG | + | chr8.2:760589-760608 | MS.gene95099:CDS | 35.0% | |
| CTCCAGCATTCAAATAAAGA+TGG | - | chr8.2:761790-761809 | None:intergenic | 35.0% | |
| GTGCACCAATAACAATATCA+TGG | + | chr8.2:761091-761110 | MS.gene95099:intron | 35.0% | |
| TAGGAATACGGAACAAAACT+TGG | + | chr8.2:759362-759381 | MS.gene95099:intron | 35.0% | |
| TAGTAGAAGAAGCTATTCCT+TGG | + | chr8.2:760694-760713 | MS.gene95099:intron | 35.0% | |
| TGAGCTGCATATTCATCAAA+TGG | - | chr8.2:761641-761660 | None:intergenic | 35.0% | |
| TGCACTAGACATGAACTTAT+TGG | + | chr8.2:760828-760847 | MS.gene95099:intron | 35.0% | |
| TTAATTGTTATGTGCTGCAG+TGG | + | chr8.2:761612-761631 | MS.gene95099:intron | 35.0% | |
| TTCTACGTAGGTGTGTATAA+AGG | + | chr8.2:760165-760184 | MS.gene95099:intron | 35.0% | |
| ! | AGCCATCTTTATTTGAATGC+TGG | + | chr8.2:761785-761804 | MS.gene95099:CDS | 35.0% |
| ! | CATCTTTATTTGAATGCTGG+AGG | + | chr8.2:761788-761807 | MS.gene95099:CDS | 35.0% |
| ! | CCTAACACCATTTGATAACT+AGG | - | chr8.2:760567-760586 | None:intergenic | 35.0% |
| ! | GCCATTTATGGAAAAGTATG+AGG | + | chr8.2:761661-761680 | MS.gene95099:CDS | 35.0% |
| ! | TTTTGACATCAAAATCCAGG+AGG | + | chr8.2:761342-761361 | MS.gene95099:CDS | 35.0% |
| !! | CGGTGTTATCGTAGAATTAA+TGG | + | chr8.2:758829-758848 | MS.gene95099:CDS | 35.0% |
| !! | GCTTGATCAGAAGCATTATT+AGG | + | chr8.2:760017-760036 | MS.gene95099:intron | 35.0% |
| !! | TGGAAAAGTATGAGGTTTTG+AGG | + | chr8.2:761669-761688 | MS.gene95099:CDS | 35.0% |
| !! | TTGTGGAAGTATTAGCATTC+AGG | + | chr8.2:760934-760953 | MS.gene95099:CDS | 35.0% |
| AAACTTCCAATGGCTGAACA+TGG | + | chr8.2:761012-761031 | MS.gene95099:intron | 40.0% | |
| AACGTGACCAAGCAAAAACA+AGG | - | chr8.2:761043-761062 | None:intergenic | 40.0% | |
| AATCTACTCATTCTGCTGCA+GGG | + | chr8.2:760724-760743 | MS.gene95099:intron | 40.0% | |
| AGAGAGGTCAAAGAAGAAAC+AGG | + | chr8.2:760772-760791 | MS.gene95099:CDS | 40.0% | |
| AGATCACATAGGAAGACAGA+TGG | - | chr8.2:760451-760470 | None:intergenic | 40.0% | |
| AGATGGCTGTCCCTTTATTA+TGG | + | chr8.2:760250-760269 | MS.gene95099:intron | 40.0% | |
| AGGAAGTTCCAAACTTCCAA+TGG | + | chr8.2:761002-761021 | MS.gene95099:intron | 40.0% | |
| ATATGCAGCTCAGCCATTTA+TGG | + | chr8.2:761649-761668 | MS.gene95099:CDS | 40.0% | |
| ATGTTCAGCCATTGGAAGTT+TGG | - | chr8.2:761013-761032 | None:intergenic | 40.0% | |
| ATTGTCTTGTAGGGCAAGAA+GGG | + | chr8.2:759447-759466 | MS.gene95099:intron | 40.0% | |
| ATTTACCTGATCAGCAACTC+CGG | - | chr8.2:760650-760669 | None:intergenic | 40.0% | |
| CACCTACGTAGAAAGTTATC+TGG | - | chr8.2:760158-760177 | None:intergenic | 40.0% | |
| CTAGCTTGACCAGAAAACTA+AGG | + | chr8.2:759907-759926 | MS.gene95099:intron | 40.0% | |
| GATCAGGTTTCTGCACAATT+TGG | + | chr8.2:759825-759844 | MS.gene95099:intron | 40.0% | |
| GATGGCTGTCCCTTTATTAT+GGG | + | chr8.2:760251-760270 | MS.gene95099:intron | 40.0% | |
| GCATTATTAGGTGAGTCCTA+TGG | + | chr8.2:760029-760048 | MS.gene95099:intron | 40.0% | |
| TAATCTACTCATTCTGCTGC+AGG | + | chr8.2:760723-760742 | MS.gene95099:intron | 40.0% | |
| TATCTGTCACAATTCTGTGC+AGG | + | chr8.2:759625-759644 | MS.gene95099:intron | 40.0% | |
| TCAGATAGACTCGGAATTTG+TGG | + | chr8.2:760917-760936 | MS.gene95099:intron | 40.0% | |
| TCTAACTGGAAACAACAGGT+AGG | + | chr8.2:758905-758924 | MS.gene95099:intron | 40.0% | |
| TGTGGTGAATGATAAACGAG+AGG | + | chr8.2:759763-759782 | MS.gene95099:CDS | 40.0% | |
| TTGAGCTTCTTCTTCTGTTG+AGG | - | chr8.2:758774-758793 | None:intergenic | 40.0% | |
| ! | ATTCTGTGCAGGAAGGTTTT+TGG | + | chr8.2:759636-759655 | MS.gene95099:intron | 40.0% |
| ! | GTACTGACAACAGATCACAT+AGG | - | chr8.2:760462-760481 | None:intergenic | 40.0% |
| !! | CTTAGTTTTCTGGTCAAGCT+AGG | - | chr8.2:759909-759928 | None:intergenic | 40.0% |
| !! | GGAAGTATTAGCATTCAGGT+GGG | + | chr8.2:760938-760957 | MS.gene95099:intron | 40.0% |
| !! | TGGAAGTATTAGCATTCAGG+TGG | + | chr8.2:760937-760956 | MS.gene95099:intron | 40.0% |
| AACTCCGGTAGGAAATTTCC+AGG | - | chr8.2:760635-760654 | None:intergenic | 45.0% | |
| ACAAGCTCAACAAGCTCATG+AGG | + | chr8.2:759965-759984 | MS.gene95099:intron | 45.0% | |
| ACTGGAAACAACAGGTAGGT+AGG | + | chr8.2:758909-758928 | MS.gene95099:intron | 45.0% | |
| CACACTCCCATATGGTTAGA+TGG | + | chr8.2:760233-760252 | MS.gene95099:intron | 45.0% | |
| CATTGTCTTGTAGGGCAAGA+AGG | + | chr8.2:759446-759465 | MS.gene95099:intron | 45.0% | |
| CTAGTGACAATTTCCAGCAC+AGG | - | chr8.2:759409-759428 | None:intergenic | 45.0% | |
| GAAGCACAAACACTCCCATA+TGG | + | chr8.2:759847-759866 | MS.gene95099:intron | 45.0% | |
| GGAAACCTTTACCGTTCTTC+AGG | - | chr8.2:760075-760094 | None:intergenic | 45.0% | |
| GGACAGCCATCTAACCATAT+GGG | - | chr8.2:760242-760261 | None:intergenic | 45.0% | |
| GGATCCTGGAAATTTCCTAC+CGG | + | chr8.2:760628-760647 | MS.gene95099:CDS | 45.0% | |
| GGTAGAGATAGAAGCTGCAA+AGG | + | chr8.2:761363-761382 | MS.gene95099:CDS | 45.0% | |
| GTCCTATGGATACACAACTC+CGG | + | chr8.2:760043-760062 | MS.gene95099:intron | 45.0% | |
| TATGGATACACAACTCCGGT+GGG | + | chr8.2:760047-760066 | MS.gene95099:intron | 45.0% | |
| TATTCATCTGGCCAACCTTG+TGG | + | chr8.2:759488-759507 | MS.gene95099:CDS | 45.0% | |
| TGTCACAATTCTGTGCAGGA+AGG | + | chr8.2:759629-759648 | MS.gene95099:intron | 45.0% | |
| TGTGCAGAAACCTGATCATG+TGG | - | chr8.2:759822-759841 | None:intergenic | 45.0% | |
| ! | ACAAGGTTGGCCAGATGAAT+AGG | - | chr8.2:759489-759508 | None:intergenic | 45.0% |
| !! | ACTGGACATTTTCAGGGAAC+TGG | + | chr8.2:760607-760626 | MS.gene95099:CDS | 45.0% |
| !! | ATTTTCAGGGAACTGGATCC+TGG | + | chr8.2:760614-760633 | MS.gene95099:CDS | 45.0% |
| !!! | GGAGAGTCCTTGTTTTTGCT+TGG | + | chr8.2:761033-761052 | MS.gene95099:intron | 45.0% |
| !!! | TCACGTTGGTTCTTTTGTCG+TGG | - | chr8.2:760863-760882 | None:intergenic | 45.0% |
| AAGGGACAGTTTACCTGTGC+TGG | + | chr8.2:759393-759412 | MS.gene95099:intron | 50.0% | |
| AGCGGTCAGATAATACGTGC+TGG | + | chr8.2:761120-761139 | MS.gene95099:intron | 50.0% | |
| CAAACGCTCCAATACCCACT+CGG | - | chr8.2:759745-759764 | None:intergenic | 50.0% | |
| CACCGGAGTTGTGTATCCAT+AGG | - | chr8.2:760048-760067 | None:intergenic | 50.0% | |
| CAGCTTCTATCTCTACCTCC+TGG | - | chr8.2:761360-761379 | None:intergenic | 50.0% | |
| CTATGGATACACAACTCCGG+TGG | + | chr8.2:760046-760065 | MS.gene95099:intron | 50.0% | |
| GAAGCACACACACTCCCATA+TGG | + | chr8.2:760225-760244 | MS.gene95099:intron | 50.0% | |
| GACTCTCCATGTTCAGCCAT+TGG | - | chr8.2:761021-761040 | None:intergenic | 50.0% | |
| GGGACAGCCATCTAACCATA+TGG | - | chr8.2:760243-760262 | None:intergenic | 50.0% | |
| GGGTTCCTGAAGAACGGTAA+AGG | + | chr8.2:760067-760086 | MS.gene95099:intron | 50.0% | |
| GTGTGTGGCATTTGCAGGAA+TGG | - | chr8.2:759723-759742 | None:intergenic | 50.0% | |
| TGAATGCTGGAGGCCTTAAG+AGG | + | chr8.2:761798-761817 | MS.gene95099:CDS | 50.0% | |
| TGCAGAGCAACCACATGATC+AGG | + | chr8.2:759809-759828 | MS.gene95099:intron | 50.0% | |
| TTGTGCAGCAGCAGTAAGAG+AGG | + | chr8.2:760756-760775 | MS.gene95099:CDS | 50.0% | |
| !! | AGTGGGTATTGGAGCGTTTG+TGG | + | chr8.2:759745-759764 | MS.gene95099:CDS | 50.0% |
| !! | TGTAGGGCAAGAAGGGTGTT+TGG | + | chr8.2:759454-759473 | MS.gene95099:intron | 50.0% |
| ACCGTTCTTCAGGAACCCAC+CGG | - | chr8.2:760065-760084 | None:intergenic | 55.0% | |
| ACCTGATCAGCAACTCCGGT+AGG | - | chr8.2:760646-760665 | None:intergenic | 55.0% | |
| GCAAATGCCACACACCGAGT+GGG | + | chr8.2:759728-759747 | MS.gene95099:CDS | 55.0% | |
| TCCTACCGGAGTTGCTGATC+AGG | + | chr8.2:760642-760661 | MS.gene95099:CDS | 55.0% | |
| TGCAAATGCCACACACCGAG+TGG | + | chr8.2:759727-759746 | MS.gene95099:CDS | 55.0% | |
| ! | TCCGGTGGGTTCCTGAAGAA+CGG | + | chr8.2:760061-760080 | MS.gene95099:intron | 55.0% |
| !! | ACTCGGTGTGTGGCATTTGC+AGG | - | chr8.2:759728-759747 | None:intergenic | 55.0% |
| !! | TCCAATACCCACTCGGTGTG+TGG | - | chr8.2:759738-759757 | None:intergenic | 55.0% |
| GCCACACACCGAGTGGGTAT+TGG | + | chr8.2:759734-759753 | MS.gene95099:CDS | 60.0% | |
| ! | GGGAGTGTGTGTGCTTCCTG+AGG | - | chr8.2:760222-760241 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 758764 | 761835 | 758764 | ID=MS.gene95099 |
| chr8.2 | mRNA | 758764 | 761835 | 758764 | ID=MS.gene95099.t1;Parent=MS.gene95099 |
| chr8.2 | exon | 758764 | 758922 | 758764 | ID=MS.gene95099.t1.exon1;Parent=MS.gene95099.t1 |
| chr8.2 | CDS | 758764 | 758922 | 758764 | ID=cds.MS.gene95099.t1;Parent=MS.gene95099.t1 |
| chr8.2 | exon | 759459 | 759524 | 759459 | ID=MS.gene95099.t1.exon2;Parent=MS.gene95099.t1 |
| chr8.2 | CDS | 759459 | 759524 | 759459 | ID=cds.MS.gene95099.t1;Parent=MS.gene95099.t1 |
| chr8.2 | exon | 759647 | 759784 | 759647 | ID=MS.gene95099.t1.exon3;Parent=MS.gene95099.t1 |
| chr8.2 | CDS | 759647 | 759784 | 759647 | ID=cds.MS.gene95099.t1;Parent=MS.gene95099.t1 |
| chr8.2 | exon | 760586 | 760663 | 760586 | ID=MS.gene95099.t1.exon4;Parent=MS.gene95099.t1 |
| chr8.2 | CDS | 760586 | 760663 | 760586 | ID=cds.MS.gene95099.t1;Parent=MS.gene95099.t1 |
| chr8.2 | exon | 760745 | 760795 | 760745 | ID=MS.gene95099.t1.exon5;Parent=MS.gene95099.t1 |
| chr8.2 | CDS | 760745 | 760795 | 760745 | ID=cds.MS.gene95099.t1;Parent=MS.gene95099.t1 |
| chr8.2 | exon | 760921 | 760955 | 760921 | ID=MS.gene95099.t1.exon6;Parent=MS.gene95099.t1 |
| chr8.2 | CDS | 760921 | 760955 | 760921 | ID=cds.MS.gene95099.t1;Parent=MS.gene95099.t1 |
| chr8.2 | exon | 761276 | 761384 | 761276 | ID=MS.gene95099.t1.exon7;Parent=MS.gene95099.t1 |
| chr8.2 | CDS | 761276 | 761384 | 761276 | ID=cds.MS.gene95099.t1;Parent=MS.gene95099.t1 |
| chr8.2 | exon | 761632 | 761835 | 761632 | ID=MS.gene95099.t1.exon8;Parent=MS.gene95099.t1 |
| chr8.2 | CDS | 761632 | 761835 | 761632 | ID=cds.MS.gene95099.t1;Parent=MS.gene95099.t1 |
| Gene Sequence |
| Protein sequence |
